Multiple sequence alignment - TraesCS1B01G472100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G472100 chr1B 100.000 3244 0 0 2772 6015 679755899 679752656 0.000000e+00 5991.0
1 TraesCS1B01G472100 chr1B 100.000 2429 0 0 1 2429 679758670 679756242 0.000000e+00 4486.0
2 TraesCS1B01G472100 chr1B 92.073 164 11 2 2212 2375 422756081 422755920 4.690000e-56 230.0
3 TraesCS1B01G472100 chr1B 87.500 56 7 0 5114 5169 470643306 470643361 1.400000e-06 65.8
4 TraesCS1B01G472100 chr1B 89.796 49 5 0 5121 5169 470691458 470691506 5.030000e-06 63.9
5 TraesCS1B01G472100 chr1D 86.690 1157 107 32 3799 4942 487957790 487956668 0.000000e+00 1240.0
6 TraesCS1B01G472100 chr1D 90.194 928 70 9 1513 2427 487959991 487959072 0.000000e+00 1190.0
7 TraesCS1B01G472100 chr1D 86.973 806 87 9 3213 4015 487958603 487957813 0.000000e+00 891.0
8 TraesCS1B01G472100 chr1D 89.292 551 29 10 5468 5991 487955664 487955117 0.000000e+00 664.0
9 TraesCS1B01G472100 chr1D 85.256 624 36 22 869 1478 487960575 487959994 5.190000e-165 592.0
10 TraesCS1B01G472100 chr1D 91.553 438 8 7 2772 3209 487959053 487958645 1.450000e-160 577.0
11 TraesCS1B01G472100 chr1D 86.024 415 29 10 4945 5354 487956617 487956227 9.320000e-113 418.0
12 TraesCS1B01G472100 chr1D 93.878 98 6 0 5366 5463 487956246 487956149 1.350000e-31 148.0
13 TraesCS1B01G472100 chr1D 94.118 34 2 0 5117 5150 410745092 410745125 1.100000e-02 52.8
14 TraesCS1B01G472100 chr1A 84.917 1147 133 26 3799 4935 586994752 586993636 0.000000e+00 1123.0
15 TraesCS1B01G472100 chr1A 91.837 686 43 4 1746 2421 586997070 586996388 0.000000e+00 944.0
16 TraesCS1B01G472100 chr1A 87.841 806 80 9 3213 4015 586995565 586994775 0.000000e+00 929.0
17 TraesCS1B01G472100 chr1A 86.849 730 76 8 1474 2190 218308310 218307588 0.000000e+00 798.0
18 TraesCS1B01G472100 chr1A 87.360 712 43 9 977 1661 586999189 586998498 0.000000e+00 773.0
19 TraesCS1B01G472100 chr1A 97.183 426 11 1 2784 3209 586996031 586995607 0.000000e+00 719.0
20 TraesCS1B01G472100 chr1A 87.640 534 38 17 5468 5991 586956170 586955655 4.010000e-166 595.0
21 TraesCS1B01G472100 chr1A 84.423 520 63 10 1864 2375 212385101 212384592 4.190000e-136 496.0
22 TraesCS1B01G472100 chr1A 86.154 325 35 6 1344 1661 586997545 586997224 5.770000e-90 342.0
23 TraesCS1B01G472100 chr6D 91.332 796 65 3 3 796 349006856 349007649 0.000000e+00 1085.0
24 TraesCS1B01G472100 chr6D 86.015 522 56 9 1864 2375 473227468 473227982 1.470000e-150 544.0
25 TraesCS1B01G472100 chr6D 87.302 63 8 0 5112 5174 447891329 447891391 8.360000e-09 73.1
26 TraesCS1B01G472100 chr7B 90.392 791 74 2 3 792 399250542 399251331 0.000000e+00 1038.0
27 TraesCS1B01G472100 chr7B 83.852 675 106 3 6 679 578106625 578105953 1.830000e-179 640.0
28 TraesCS1B01G472100 chr5A 86.809 796 98 7 3 796 32506567 32507357 0.000000e+00 881.0
29 TraesCS1B01G472100 chr5A 93.168 161 9 2 2212 2372 535504815 535504973 1.010000e-57 235.0
30 TraesCS1B01G472100 chr3D 92.101 595 45 2 3 597 68471563 68470971 0.000000e+00 837.0
31 TraesCS1B01G472100 chr3A 85.375 800 107 8 4 798 552469693 552468899 0.000000e+00 821.0
32 TraesCS1B01G472100 chr3A 83.062 614 95 9 3 612 738175390 738174782 3.170000e-152 549.0
33 TraesCS1B01G472100 chr3A 84.423 520 58 10 1864 2375 289990125 289990629 1.950000e-134 490.0
34 TraesCS1B01G472100 chr6A 82.025 790 129 12 3 783 122803326 122804111 0.000000e+00 660.0
35 TraesCS1B01G472100 chr7A 86.731 520 56 6 1864 2375 114044723 114044209 3.150000e-157 566.0
36 TraesCS1B01G472100 chr7D 86.180 521 54 8 1864 2375 518888303 518887792 1.140000e-151 547.0
37 TraesCS1B01G472100 chr7D 96.970 33 1 0 5129 5161 637404963 637404995 8.420000e-04 56.5
38 TraesCS1B01G472100 chr7D 88.889 45 5 0 5117 5161 637473059 637473103 8.420000e-04 56.5
39 TraesCS1B01G472100 chr7D 88.889 45 5 0 5117 5161 637483375 637483419 8.420000e-04 56.5
40 TraesCS1B01G472100 chrUn 82.899 614 96 9 3 612 396413074 396412466 1.470000e-150 544.0
41 TraesCS1B01G472100 chrUn 88.584 219 24 1 1569 1786 295929663 295929445 1.290000e-66 265.0
42 TraesCS1B01G472100 chrUn 88.584 219 24 1 1569 1786 295934779 295934561 1.290000e-66 265.0
43 TraesCS1B01G472100 chrUn 88.584 219 24 1 1569 1786 344037873 344037655 1.290000e-66 265.0
44 TraesCS1B01G472100 chr5D 85.660 523 53 12 1864 2375 33109020 33109531 1.150000e-146 531.0
45 TraesCS1B01G472100 chr5D 91.489 47 4 0 5111 5157 556391241 556391195 1.400000e-06 65.8
46 TraesCS1B01G472100 chr4A 83.333 72 11 1 5090 5161 709571546 709571616 1.400000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G472100 chr1B 679752656 679758670 6014 True 5238.5 5991 100.000000 1 6015 2 chr1B.!!$R2 6014
1 TraesCS1B01G472100 chr1D 487955117 487960575 5458 True 715.0 1240 88.732500 869 5991 8 chr1D.!!$R1 5122
2 TraesCS1B01G472100 chr1A 586993636 586999189 5553 True 805.0 1123 89.215333 977 4935 6 chr1A.!!$R4 3958
3 TraesCS1B01G472100 chr1A 218307588 218308310 722 True 798.0 798 86.849000 1474 2190 1 chr1A.!!$R2 716
4 TraesCS1B01G472100 chr1A 586955655 586956170 515 True 595.0 595 87.640000 5468 5991 1 chr1A.!!$R3 523
5 TraesCS1B01G472100 chr1A 212384592 212385101 509 True 496.0 496 84.423000 1864 2375 1 chr1A.!!$R1 511
6 TraesCS1B01G472100 chr6D 349006856 349007649 793 False 1085.0 1085 91.332000 3 796 1 chr6D.!!$F1 793
7 TraesCS1B01G472100 chr6D 473227468 473227982 514 False 544.0 544 86.015000 1864 2375 1 chr6D.!!$F3 511
8 TraesCS1B01G472100 chr7B 399250542 399251331 789 False 1038.0 1038 90.392000 3 792 1 chr7B.!!$F1 789
9 TraesCS1B01G472100 chr7B 578105953 578106625 672 True 640.0 640 83.852000 6 679 1 chr7B.!!$R1 673
10 TraesCS1B01G472100 chr5A 32506567 32507357 790 False 881.0 881 86.809000 3 796 1 chr5A.!!$F1 793
11 TraesCS1B01G472100 chr3D 68470971 68471563 592 True 837.0 837 92.101000 3 597 1 chr3D.!!$R1 594
12 TraesCS1B01G472100 chr3A 552468899 552469693 794 True 821.0 821 85.375000 4 798 1 chr3A.!!$R1 794
13 TraesCS1B01G472100 chr3A 738174782 738175390 608 True 549.0 549 83.062000 3 612 1 chr3A.!!$R2 609
14 TraesCS1B01G472100 chr3A 289990125 289990629 504 False 490.0 490 84.423000 1864 2375 1 chr3A.!!$F1 511
15 TraesCS1B01G472100 chr6A 122803326 122804111 785 False 660.0 660 82.025000 3 783 1 chr6A.!!$F1 780
16 TraesCS1B01G472100 chr7A 114044209 114044723 514 True 566.0 566 86.731000 1864 2375 1 chr7A.!!$R1 511
17 TraesCS1B01G472100 chr7D 518887792 518888303 511 True 547.0 547 86.180000 1864 2375 1 chr7D.!!$R1 511
18 TraesCS1B01G472100 chrUn 396412466 396413074 608 True 544.0 544 82.899000 3 612 1 chrUn.!!$R4 609
19 TraesCS1B01G472100 chr5D 33109020 33109531 511 False 531.0 531 85.660000 1864 2375 1 chr5D.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 981 0.029567 TGTTCCGCGCAAAAACGATT 59.970 45.0 8.75 0.0 34.06 3.34 F
1368 1430 0.036732 ATGGCTTCAACCTTCGAGCA 59.963 50.0 0.00 0.0 36.87 4.26 F
1385 1447 0.036952 GCAGCAGCTCACTCCTGTTA 60.037 55.0 0.00 0.0 37.91 2.41 F
1391 1453 0.742635 GCTCACTCCTGTTAGCTGCC 60.743 60.0 0.00 0.0 39.57 4.85 F
2942 4376 0.813210 GAATGAGAAGCTCAGCCCCG 60.813 60.0 0.00 0.0 44.08 5.73 F
3926 5401 0.601558 TACACCTTCACAGACTCCGC 59.398 55.0 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 3630 0.387239 GCCTTAAAGCCGCACACAAG 60.387 55.000 0.00 0.0 0.00 3.16 R
3308 4781 0.674895 AGGCATCAGTTTCAGACGCC 60.675 55.000 0.00 0.0 38.36 5.68 R
3311 4784 3.959573 GCATAGGCATCAGTTTCAGAC 57.040 47.619 0.00 0.0 40.72 3.51 R
3361 4834 6.706270 TCCAGTTAATCTGAGTGACAAAAGAC 59.294 38.462 2.93 0.0 46.27 3.01 R
4669 6380 0.246635 AGTATCGGTCAGCGCAAAGT 59.753 50.000 11.47 0.0 0.00 2.66 R
5272 7036 0.110486 TGCCACAAGTTCTTCTCCCC 59.890 55.000 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 0.249489 GCGTAGATGACCTCGCCAAT 60.249 55.000 0.00 0.00 42.33 3.16
108 109 3.356529 AGATGACCTCGCCAATCTTTT 57.643 42.857 0.00 0.00 0.00 2.27
196 197 2.591715 GTCAAGCTGCACCGTGGT 60.592 61.111 1.02 0.00 0.00 4.16
197 198 2.186826 GTCAAGCTGCACCGTGGTT 61.187 57.895 1.02 0.00 0.00 3.67
329 331 7.466213 ACTGTATAGAGATTATCCTCTAGGGGT 59.534 40.741 8.98 0.00 45.68 4.95
511 514 0.106619 TCCCGAAGACCTAGCTCCTC 60.107 60.000 0.00 0.00 0.00 3.71
536 539 3.056179 TCAAAGCCGTCACATCATCAGTA 60.056 43.478 0.00 0.00 0.00 2.74
540 543 2.868044 GCCGTCACATCATCAGTATCCC 60.868 54.545 0.00 0.00 0.00 3.85
550 553 1.605753 TCAGTATCCCTCGATCCACG 58.394 55.000 0.00 0.00 44.09 4.94
586 589 4.444838 CCCGTCCGACGCCATGAA 62.445 66.667 15.64 0.00 40.91 2.57
587 590 2.433491 CCGTCCGACGCCATGAAA 60.433 61.111 15.64 0.00 40.91 2.69
612 616 1.687123 CGAACCCTAACCCGATCAGAT 59.313 52.381 0.00 0.00 0.00 2.90
629 634 1.648467 GATCGTCTTGGGCCTTGCAC 61.648 60.000 4.53 0.00 0.00 4.57
695 703 3.053828 CAGCAGCACCCCCAAAAG 58.946 61.111 0.00 0.00 0.00 2.27
696 704 1.833934 CAGCAGCACCCCCAAAAGT 60.834 57.895 0.00 0.00 0.00 2.66
724 735 1.313772 CAGGAGATCACGACGGAGAT 58.686 55.000 0.00 1.95 0.00 2.75
796 809 2.662596 CCTAGCGTGAGGGCAACA 59.337 61.111 0.00 0.00 39.74 3.33
797 810 1.448540 CCTAGCGTGAGGGCAACAG 60.449 63.158 0.00 0.00 39.74 3.16
798 811 1.448540 CTAGCGTGAGGGCAACAGG 60.449 63.158 0.00 0.00 39.74 4.00
799 812 1.888436 CTAGCGTGAGGGCAACAGGA 61.888 60.000 6.95 0.00 39.74 3.86
800 813 1.476845 TAGCGTGAGGGCAACAGGAA 61.477 55.000 6.95 0.00 39.74 3.36
801 814 1.896660 GCGTGAGGGCAACAGGAAA 60.897 57.895 6.95 0.00 39.74 3.13
802 815 1.856265 GCGTGAGGGCAACAGGAAAG 61.856 60.000 6.95 0.00 39.74 2.62
803 816 0.250295 CGTGAGGGCAACAGGAAAGA 60.250 55.000 0.00 0.00 39.74 2.52
804 817 1.528129 GTGAGGGCAACAGGAAAGAG 58.472 55.000 0.00 0.00 39.74 2.85
805 818 1.072331 GTGAGGGCAACAGGAAAGAGA 59.928 52.381 0.00 0.00 39.74 3.10
806 819 1.072331 TGAGGGCAACAGGAAAGAGAC 59.928 52.381 0.00 0.00 39.74 3.36
807 820 0.035458 AGGGCAACAGGAAAGAGACG 59.965 55.000 0.00 0.00 39.74 4.18
808 821 0.034896 GGGCAACAGGAAAGAGACGA 59.965 55.000 0.00 0.00 39.74 4.20
809 822 1.542547 GGGCAACAGGAAAGAGACGAA 60.543 52.381 0.00 0.00 39.74 3.85
810 823 1.801178 GGCAACAGGAAAGAGACGAAG 59.199 52.381 0.00 0.00 0.00 3.79
811 824 5.922895 GGGCAACAGGAAAGAGACGAAGT 62.923 52.174 0.00 0.00 43.19 3.01
835 848 7.654022 TGGAATGACCACGCATATATATAGA 57.346 36.000 0.00 0.00 44.64 1.98
836 849 8.250143 TGGAATGACCACGCATATATATAGAT 57.750 34.615 0.00 0.00 44.64 1.98
837 850 8.143835 TGGAATGACCACGCATATATATAGATG 58.856 37.037 12.16 12.16 44.64 2.90
838 851 7.116948 GGAATGACCACGCATATATATAGATGC 59.883 40.741 25.70 25.70 41.32 3.91
857 870 9.751542 ATAGATGCGGTAATATATTAGACTTGC 57.248 33.333 5.39 7.14 0.00 4.01
858 871 7.611770 AGATGCGGTAATATATTAGACTTGCA 58.388 34.615 5.39 11.59 0.00 4.08
859 872 7.545965 AGATGCGGTAATATATTAGACTTGCAC 59.454 37.037 15.02 11.40 0.00 4.57
860 873 6.517605 TGCGGTAATATATTAGACTTGCACA 58.482 36.000 5.39 0.00 0.00 4.57
861 874 6.645003 TGCGGTAATATATTAGACTTGCACAG 59.355 38.462 5.39 0.00 0.00 3.66
862 875 6.645415 GCGGTAATATATTAGACTTGCACAGT 59.355 38.462 5.39 0.00 39.07 3.55
882 895 3.889692 CACCACACTGGGCCTGGT 61.890 66.667 15.36 12.27 43.37 4.00
967 980 0.659123 GTGTTCCGCGCAAAAACGAT 60.659 50.000 8.75 0.00 34.06 3.73
968 981 0.029567 TGTTCCGCGCAAAAACGATT 59.970 45.000 8.75 0.00 34.06 3.34
972 985 1.799916 CGCGCAAAAACGATTCCCC 60.800 57.895 8.75 0.00 34.06 4.81
973 986 1.287503 GCGCAAAAACGATTCCCCA 59.712 52.632 0.30 0.00 34.06 4.96
974 987 0.732538 GCGCAAAAACGATTCCCCAG 60.733 55.000 0.30 0.00 34.06 4.45
975 988 0.878416 CGCAAAAACGATTCCCCAGA 59.122 50.000 0.00 0.00 34.06 3.86
996 1009 2.290641 ACCCAAATTACCGCATCAGACA 60.291 45.455 0.00 0.00 0.00 3.41
997 1010 2.355756 CCCAAATTACCGCATCAGACAG 59.644 50.000 0.00 0.00 0.00 3.51
998 1011 3.270027 CCAAATTACCGCATCAGACAGA 58.730 45.455 0.00 0.00 0.00 3.41
999 1012 3.063997 CCAAATTACCGCATCAGACAGAC 59.936 47.826 0.00 0.00 0.00 3.51
1010 1023 2.217038 AGACAGACGGCACACCCAT 61.217 57.895 0.00 0.00 0.00 4.00
1323 1362 2.627515 TCTTGCTAGGCTGGCTTATG 57.372 50.000 23.69 10.77 0.00 1.90
1324 1363 2.118679 TCTTGCTAGGCTGGCTTATGA 58.881 47.619 23.69 12.75 0.00 2.15
1326 1365 2.556144 TGCTAGGCTGGCTTATGATG 57.444 50.000 23.69 0.00 0.00 3.07
1335 1377 3.733337 CTGGCTTATGATGTAGTGGACC 58.267 50.000 0.00 0.00 0.00 4.46
1367 1429 0.449388 CATGGCTTCAACCTTCGAGC 59.551 55.000 0.00 0.00 0.00 5.03
1368 1430 0.036732 ATGGCTTCAACCTTCGAGCA 59.963 50.000 0.00 0.00 36.87 4.26
1369 1431 0.603707 TGGCTTCAACCTTCGAGCAG 60.604 55.000 0.00 0.00 36.87 4.24
1370 1432 1.499502 GCTTCAACCTTCGAGCAGC 59.500 57.895 0.00 0.00 35.29 5.25
1371 1433 1.230635 GCTTCAACCTTCGAGCAGCA 61.231 55.000 0.00 0.00 35.29 4.41
1372 1434 0.795085 CTTCAACCTTCGAGCAGCAG 59.205 55.000 0.00 0.00 0.00 4.24
1373 1435 1.230635 TTCAACCTTCGAGCAGCAGC 61.231 55.000 0.00 0.00 42.56 5.25
1383 1445 2.346739 GCAGCAGCTCACTCCTGT 59.653 61.111 0.00 0.00 37.91 4.00
1384 1446 1.302351 GCAGCAGCTCACTCCTGTT 60.302 57.895 0.00 0.00 37.91 3.16
1385 1447 0.036952 GCAGCAGCTCACTCCTGTTA 60.037 55.000 0.00 0.00 37.91 2.41
1386 1448 2.006056 GCAGCAGCTCACTCCTGTTAG 61.006 57.143 0.00 0.00 37.91 2.34
1391 1453 0.742635 GCTCACTCCTGTTAGCTGCC 60.743 60.000 0.00 0.00 39.57 4.85
1439 1501 6.083630 TCAGTTTTGTGAATAAACTATGCGC 58.916 36.000 0.00 0.00 42.32 6.09
1460 1522 3.589988 CTGTCCGTCTTAATTCTGCTGT 58.410 45.455 0.00 0.00 0.00 4.40
1466 1528 4.265556 CCGTCTTAATTCTGCTGTAACTCG 59.734 45.833 0.00 0.00 0.00 4.18
1507 1575 2.749621 GGTATGCAACCCTGAAACAGAG 59.250 50.000 0.00 0.00 43.16 3.35
1530 1598 9.113838 AGAGCAAAAATATTATCTGTACAGGTG 57.886 33.333 22.48 1.61 0.00 4.00
1552 1620 8.137437 AGGTGATGATTGTTTCAAGTTAAGTTG 58.863 33.333 15.66 15.66 38.03 3.16
1602 1670 3.404899 CTGCATTTCACTGCCCAATTTT 58.595 40.909 0.00 0.00 41.58 1.82
1603 1671 3.401182 TGCATTTCACTGCCCAATTTTC 58.599 40.909 0.00 0.00 41.58 2.29
1617 1685 2.254546 ATTTTCACGCTCACACCTGA 57.745 45.000 0.00 0.00 0.00 3.86
1662 1758 6.978343 TGTACAGAACCATGTATGTAAAGC 57.022 37.500 0.00 0.00 37.93 3.51
1890 3306 7.330454 GCACGATATATCATCTTCATGTTGTCT 59.670 37.037 13.11 0.00 0.00 3.41
1950 3371 4.440826 TTACTGCCTGGTGGTTAAGAAA 57.559 40.909 0.00 0.00 35.27 2.52
1951 3372 3.525800 ACTGCCTGGTGGTTAAGAAAT 57.474 42.857 0.00 0.00 35.27 2.17
1998 3420 1.417890 CGCAGGGGAGAAATGGTAGAT 59.582 52.381 0.00 0.00 0.00 1.98
2046 3468 7.841956 AGTGCCAGACATACTATTATATCCAC 58.158 38.462 0.00 0.00 0.00 4.02
2085 3508 2.737252 GGTCTTGTCTCATCAAACGGTC 59.263 50.000 0.00 0.00 0.00 4.79
2202 3630 5.519206 CCTAACGCTTTCTGTACCAGTTATC 59.481 44.000 0.00 0.00 32.61 1.75
2225 3653 1.036707 TGTGCGGCTTTAAGGCTTTT 58.963 45.000 16.27 0.00 38.85 2.27
2226 3654 1.410882 TGTGCGGCTTTAAGGCTTTTT 59.589 42.857 16.27 0.00 38.85 1.94
2423 3857 8.677300 AGTTTGTTCTATGGCACTAATACATTG 58.323 33.333 0.00 0.00 0.00 2.82
2427 3861 8.208718 GTTCTATGGCACTAATACATTGAACA 57.791 34.615 18.88 0.00 46.56 3.18
2900 4334 2.277737 CCCAGCATGAGCATGGGT 59.722 61.111 12.00 0.00 45.95 4.51
2942 4376 0.813210 GAATGAGAAGCTCAGCCCCG 60.813 60.000 0.00 0.00 44.08 5.73
3018 4452 7.973388 CAGTAAGAGATCAACCTTCTGTCTTAG 59.027 40.741 0.00 0.00 0.00 2.18
3065 4499 9.921637 TTTATAAGGTTTCAACTAGCAAAATGG 57.078 29.630 0.00 0.00 0.00 3.16
3198 4632 7.913789 ACTTGTATATAAACTCCACAGGAACA 58.086 34.615 0.00 0.00 0.00 3.18
3209 4643 2.997986 CCACAGGAACAATGGTACGTAC 59.002 50.000 17.56 17.56 31.87 3.67
3210 4644 3.306502 CCACAGGAACAATGGTACGTACT 60.307 47.826 24.07 4.09 31.87 2.73
3226 4699 7.148440 TGGTACGTACTTAATTGTTAACATGCC 60.148 37.037 24.07 4.08 0.00 4.40
3239 4712 6.164876 TGTTAACATGCCATTTTCCATTCTG 58.835 36.000 3.59 0.00 0.00 3.02
3308 4781 3.941483 AGGATGAAAATAACGAGCTGGTG 59.059 43.478 0.71 0.00 0.00 4.17
3344 4817 4.475051 TGCCTATGCAATTGCTGATTTT 57.525 36.364 29.37 10.89 46.66 1.82
3361 4834 8.196771 TGCTGATTTTATTAATGTAAGCCCTTG 58.803 33.333 0.00 0.00 0.00 3.61
3391 4864 6.591935 TGTCACTCAGATTAACTGGAAACTT 58.408 36.000 0.00 0.00 45.76 2.66
3408 4881 6.816640 TGGAAACTTGACATACCTTTCTATCG 59.183 38.462 0.00 0.00 0.00 2.92
3419 4892 4.389374 ACCTTTCTATCGTGCCCATAATG 58.611 43.478 0.00 0.00 0.00 1.90
3447 4920 8.131455 ACACATAATTCGTCATATCTTGTGTC 57.869 34.615 0.00 0.00 40.63 3.67
3474 4947 2.665165 TGCATATTGGGTTGGATCCAC 58.335 47.619 15.91 9.83 33.43 4.02
3482 4955 2.169769 TGGGTTGGATCCACGAACTATC 59.830 50.000 15.91 0.00 37.37 2.08
3492 4965 6.073548 GGATCCACGAACTATCTTTGCATTAG 60.074 42.308 6.95 0.00 0.00 1.73
3499 4972 6.073548 CGAACTATCTTTGCATTAGTGATCCC 60.074 42.308 0.00 0.00 0.00 3.85
3512 4985 8.352942 GCATTAGTGATCCCCTGTTTTTATTAG 58.647 37.037 0.00 0.00 0.00 1.73
3513 4986 9.408648 CATTAGTGATCCCCTGTTTTTATTAGT 57.591 33.333 0.00 0.00 0.00 2.24
3529 5004 9.890915 TTTTTATTAGTCCCAGGGCATATTTAT 57.109 29.630 0.00 0.00 0.00 1.40
3536 5011 6.211384 AGTCCCAGGGCATATTTATATTTTGC 59.789 38.462 0.00 0.00 0.00 3.68
3537 5012 6.014669 GTCCCAGGGCATATTTATATTTTGCA 60.015 38.462 0.00 0.00 0.00 4.08
3540 5015 7.444299 CCAGGGCATATTTATATTTTGCAACT 58.556 34.615 0.00 0.00 0.00 3.16
3559 5034 6.884295 TGCAACTAGGCAAGTAATTATTGTCT 59.116 34.615 14.76 14.76 44.43 3.41
3591 5066 9.491675 TTGCAAATTTTCAATATCATGACTGTT 57.508 25.926 0.00 0.00 0.00 3.16
3601 5076 9.288576 TCAATATCATGACTGTTCAGAAGTTTT 57.711 29.630 0.00 0.00 34.35 2.43
3647 5122 4.451774 CAGCATGCTATTCTTCTTAGCTCC 59.548 45.833 22.19 0.00 42.08 4.70
3652 5127 3.244387 GCTATTCTTCTTAGCTCCTGGGG 60.244 52.174 0.00 0.00 39.18 4.96
3661 5136 2.881111 AGCTCCTGGGGTTTTTAGTC 57.119 50.000 0.00 0.00 0.00 2.59
3668 5143 5.034200 TCCTGGGGTTTTTAGTCTATAGCA 58.966 41.667 0.00 0.00 0.00 3.49
3685 5160 9.226345 GTCTATAGCAGTTTGAATATTTTGCAC 57.774 33.333 0.00 0.00 34.17 4.57
3713 5188 6.252233 TGATTGTGTTCCTTCATATTTCCCA 58.748 36.000 0.00 0.00 0.00 4.37
3729 5204 8.785946 CATATTTCCCAAAAATTGAAGCAAAGT 58.214 29.630 0.00 0.00 0.00 2.66
3733 5208 5.816777 TCCCAAAAATTGAAGCAAAGTTCAG 59.183 36.000 0.00 0.00 37.72 3.02
3748 5223 1.334869 GTTCAGTTGGCTGGAGTTGTG 59.665 52.381 0.00 0.00 42.78 3.33
3771 5246 4.984295 TCTGCTATCAGAGATGCTACTCT 58.016 43.478 7.27 7.27 43.95 3.24
3778 5253 7.807907 GCTATCAGAGATGCTACTCTTTACTTC 59.192 40.741 9.77 0.00 43.62 3.01
3780 5255 5.880887 TCAGAGATGCTACTCTTTACTTCGA 59.119 40.000 9.77 0.00 43.62 3.71
3783 5258 7.704472 CAGAGATGCTACTCTTTACTTCGATTT 59.296 37.037 9.77 0.00 43.62 2.17
3786 5261 9.871238 AGATGCTACTCTTTACTTCGATTTTTA 57.129 29.630 0.00 0.00 0.00 1.52
3815 5290 2.680577 CTTTTGCCTGCACCTTTCATC 58.319 47.619 0.00 0.00 0.00 2.92
3816 5291 0.968405 TTTGCCTGCACCTTTCATCC 59.032 50.000 0.00 0.00 0.00 3.51
3822 5297 2.648059 CTGCACCTTTCATCCTAAGGG 58.352 52.381 6.59 0.00 45.23 3.95
3823 5298 1.284785 TGCACCTTTCATCCTAAGGGG 59.715 52.381 6.59 3.25 46.81 4.79
3833 5308 6.901615 TTCATCCTAAGGGGTCTTGAATTA 57.098 37.500 0.00 0.00 34.59 1.40
3838 5313 7.098845 TCCTAAGGGGTCTTGAATTAACTTT 57.901 36.000 0.00 0.00 34.59 2.66
3839 5314 8.222138 TCCTAAGGGGTCTTGAATTAACTTTA 57.778 34.615 0.00 0.00 34.59 1.85
3840 5315 8.842764 TCCTAAGGGGTCTTGAATTAACTTTAT 58.157 33.333 0.00 0.00 34.59 1.40
3841 5316 9.475620 CCTAAGGGGTCTTGAATTAACTTTATT 57.524 33.333 0.00 0.00 34.59 1.40
3868 5343 2.191128 AGTGAGCCATGAAACTGGAC 57.809 50.000 0.00 0.00 38.69 4.02
3872 5347 2.027192 TGAGCCATGAAACTGGACCTAC 60.027 50.000 0.00 0.00 38.69 3.18
3875 5350 2.027192 GCCATGAAACTGGACCTACAGA 60.027 50.000 0.00 0.00 40.97 3.41
3906 5381 3.685139 TTTTACCTCTCAGACTGCAGG 57.315 47.619 19.93 15.44 0.00 4.85
3907 5382 2.310779 TTACCTCTCAGACTGCAGGT 57.689 50.000 22.60 22.60 42.21 4.00
3915 5390 1.618837 TCAGACTGCAGGTACACCTTC 59.381 52.381 19.93 3.47 46.09 3.46
3916 5391 1.344438 CAGACTGCAGGTACACCTTCA 59.656 52.381 19.93 0.00 46.09 3.02
3919 5394 1.070758 ACTGCAGGTACACCTTCACAG 59.929 52.381 19.93 16.09 46.09 3.66
3925 5400 1.067776 GGTACACCTTCACAGACTCCG 60.068 57.143 0.00 0.00 0.00 4.63
3926 5401 0.601558 TACACCTTCACAGACTCCGC 59.398 55.000 0.00 0.00 0.00 5.54
3927 5402 1.374758 CACCTTCACAGACTCCGCC 60.375 63.158 0.00 0.00 0.00 6.13
3932 5407 1.134367 CTTCACAGACTCCGCCGATAA 59.866 52.381 0.00 0.00 0.00 1.75
3933 5408 1.179152 TCACAGACTCCGCCGATAAA 58.821 50.000 0.00 0.00 0.00 1.40
3934 5409 1.754803 TCACAGACTCCGCCGATAAAT 59.245 47.619 0.00 0.00 0.00 1.40
3935 5410 2.128035 CACAGACTCCGCCGATAAATC 58.872 52.381 0.00 0.00 0.00 2.17
3939 5414 2.365617 AGACTCCGCCGATAAATCACAT 59.634 45.455 0.00 0.00 0.00 3.21
3961 5436 3.533068 TGGGATGAAGGATTCCATTTCCT 59.467 43.478 5.29 0.00 46.93 3.36
3971 5446 4.931601 GGATTCCATTTCCTTCAAAGCAAC 59.068 41.667 0.00 0.00 0.00 4.17
3980 5455 6.899393 TTCCTTCAAAGCAACATGACTATT 57.101 33.333 0.00 0.00 0.00 1.73
3990 5465 4.980434 GCAACATGACTATTGGCATTGATC 59.020 41.667 0.00 0.00 0.00 2.92
3997 5472 9.622004 CATGACTATTGGCATTGATCTTTATTC 57.378 33.333 0.00 0.00 0.00 1.75
4077 5786 2.383855 AGCAAAGCCAAGGTTTACACA 58.616 42.857 0.00 0.00 31.81 3.72
4101 5810 1.813513 ATCTTAGCATGGCGTATGGC 58.186 50.000 0.56 0.56 37.26 4.40
4194 5903 1.474077 CTTTTCTTGGATTCCTGGGCG 59.526 52.381 3.95 0.00 0.00 6.13
4300 6009 3.590824 CACAAATCCGGTGGAGCC 58.409 61.111 0.00 0.00 34.05 4.70
4348 6057 1.911057 CCCCCAACTCTTCCTTTCAC 58.089 55.000 0.00 0.00 0.00 3.18
4354 6063 5.316987 CCCAACTCTTCCTTTCACTATGTT 58.683 41.667 0.00 0.00 0.00 2.71
4356 6065 6.294176 CCCAACTCTTCCTTTCACTATGTTTG 60.294 42.308 0.00 0.00 0.00 2.93
4362 6071 7.394016 TCTTCCTTTCACTATGTTTGCATCTA 58.606 34.615 0.00 0.00 36.58 1.98
4365 6074 7.168219 TCCTTTCACTATGTTTGCATCTAACT 58.832 34.615 1.74 0.00 36.58 2.24
4367 6076 7.119699 CCTTTCACTATGTTTGCATCTAACTCA 59.880 37.037 1.74 0.00 36.58 3.41
4368 6077 7.601073 TTCACTATGTTTGCATCTAACTCAG 57.399 36.000 1.74 1.81 36.58 3.35
4372 6081 3.674997 TGTTTGCATCTAACTCAGGACC 58.325 45.455 1.74 0.00 0.00 4.46
4373 6082 3.072330 TGTTTGCATCTAACTCAGGACCA 59.928 43.478 0.00 0.00 0.00 4.02
4374 6083 4.263462 TGTTTGCATCTAACTCAGGACCAT 60.263 41.667 0.00 0.00 0.00 3.55
4375 6084 3.548745 TGCATCTAACTCAGGACCATG 57.451 47.619 0.00 0.00 0.00 3.66
4377 6086 3.264193 TGCATCTAACTCAGGACCATGTT 59.736 43.478 0.00 0.00 0.00 2.71
4378 6087 4.469586 TGCATCTAACTCAGGACCATGTTA 59.530 41.667 0.00 0.00 0.00 2.41
4380 6089 5.626809 GCATCTAACTCAGGACCATGTTACA 60.627 44.000 0.00 0.00 0.00 2.41
4382 6091 2.743636 ACTCAGGACCATGTTACACG 57.256 50.000 0.00 0.00 0.00 4.49
4387 6098 3.502237 GACCATGTTACACGGTCGT 57.498 52.632 14.84 0.00 39.86 4.34
4411 6122 7.872163 TGCTTTGCACTGAGTATTTATTTTG 57.128 32.000 0.00 0.00 31.71 2.44
4412 6123 7.432869 TGCTTTGCACTGAGTATTTATTTTGT 58.567 30.769 0.00 0.00 31.71 2.83
4415 6126 7.759489 TTGCACTGAGTATTTATTTTGTCCT 57.241 32.000 0.00 0.00 0.00 3.85
4416 6127 7.377766 TGCACTGAGTATTTATTTTGTCCTC 57.622 36.000 0.00 0.00 0.00 3.71
4417 6128 6.939730 TGCACTGAGTATTTATTTTGTCCTCA 59.060 34.615 0.00 0.00 0.00 3.86
4630 6341 2.820197 CCTTTTAGCCCCTTGTCTTGTC 59.180 50.000 0.00 0.00 0.00 3.18
4640 6351 2.439409 CTTGTCTTGTCCATCCATGCA 58.561 47.619 0.00 0.00 0.00 3.96
4650 6361 5.141910 TGTCCATCCATGCATGATTTATGT 58.858 37.500 28.31 2.75 39.08 2.29
4651 6362 6.305411 TGTCCATCCATGCATGATTTATGTA 58.695 36.000 28.31 9.78 39.08 2.29
4654 6365 7.758076 GTCCATCCATGCATGATTTATGTAATG 59.242 37.037 28.31 14.35 39.08 1.90
4659 6370 2.910482 GCATGATTTATGTAATGCCGCG 59.090 45.455 0.00 0.00 39.58 6.46
4660 6371 3.491356 CATGATTTATGTAATGCCGCGG 58.509 45.455 24.05 24.05 31.92 6.46
4661 6372 1.876799 TGATTTATGTAATGCCGCGGG 59.123 47.619 29.38 8.95 0.00 6.13
4662 6373 1.199097 GATTTATGTAATGCCGCGGGG 59.801 52.381 29.38 15.40 0.00 5.73
4681 6392 3.056328 GGGGGACTTTGCGCTGAC 61.056 66.667 9.73 0.00 0.00 3.51
4682 6393 3.056328 GGGGACTTTGCGCTGACC 61.056 66.667 9.73 8.66 0.00 4.02
4683 6394 3.423154 GGGACTTTGCGCTGACCG 61.423 66.667 9.73 0.00 40.75 4.79
4685 6396 1.741770 GGACTTTGCGCTGACCGAT 60.742 57.895 9.73 0.00 40.02 4.18
4686 6397 0.459585 GGACTTTGCGCTGACCGATA 60.460 55.000 9.73 0.00 40.02 2.92
4687 6398 0.645868 GACTTTGCGCTGACCGATAC 59.354 55.000 9.73 0.00 40.02 2.24
4699 6410 0.449388 ACCGATACTTCGTCGTGGAC 59.551 55.000 0.00 0.00 43.97 4.02
4815 6526 3.364062 CACCAAGATAGACTAGAACGCG 58.636 50.000 3.53 3.53 0.00 6.01
4868 6579 7.760340 CCTGTTGGTTGTAGACTTAGAAGATAC 59.240 40.741 0.00 0.35 0.00 2.24
4872 6583 6.952358 TGGTTGTAGACTTAGAAGATACCTGT 59.048 38.462 0.00 0.00 0.00 4.00
4884 6595 3.779444 AGATACCTGTCTGTTGTCTGGA 58.221 45.455 0.00 0.00 0.00 3.86
4895 6606 5.689514 GTCTGTTGTCTGGAATAGATGATCG 59.310 44.000 0.00 0.00 37.83 3.69
4898 6609 4.855715 TGTCTGGAATAGATGATCGACC 57.144 45.455 0.00 0.00 37.83 4.79
4910 6621 4.107029 TCGACCCCGATGTGAACT 57.893 55.556 0.00 0.00 40.30 3.01
4942 6653 4.282195 GCACTATACAGCACCCTCTCTATT 59.718 45.833 0.00 0.00 0.00 1.73
4944 6655 6.219473 CACTATACAGCACCCTCTCTATTTG 58.781 44.000 0.00 0.00 0.00 2.32
4947 6658 2.026822 ACAGCACCCTCTCTATTTGTGG 60.027 50.000 0.00 0.00 0.00 4.17
4948 6659 2.237143 CAGCACCCTCTCTATTTGTGGA 59.763 50.000 0.00 0.00 0.00 4.02
4972 6731 3.201930 ACCCCAAAATTTTGCCAACTCTT 59.798 39.130 22.90 0.99 36.86 2.85
5021 6782 2.479560 GGTTTCTTGTGTCAACCTGCAC 60.480 50.000 0.00 0.00 37.56 4.57
5030 6791 5.527951 TGTGTCAACCTGCACATTTTTATC 58.472 37.500 0.00 0.00 40.24 1.75
5089 6850 4.722361 TTTGCCGGTAAAGTGTTCTTTT 57.278 36.364 14.20 0.00 42.84 2.27
5090 6851 4.722361 TTGCCGGTAAAGTGTTCTTTTT 57.278 36.364 1.06 0.00 42.84 1.94
5110 6871 2.437200 TTCTTTTGCGGAAAGGCATG 57.563 45.000 6.65 0.00 44.00 4.06
5114 6875 1.876497 TTTGCGGAAAGGCATGAGGC 61.876 55.000 0.00 0.00 43.52 4.70
5131 6892 7.278868 GGCATGAGGCTATACATTAAGTATCAC 59.721 40.741 0.00 0.00 39.95 3.06
5132 6893 7.819415 GCATGAGGCTATACATTAAGTATCACA 59.181 37.037 0.00 0.00 42.38 3.58
5136 6897 7.897864 AGGCTATACATTAAGTATCACAGGTC 58.102 38.462 0.00 0.00 42.38 3.85
5137 6898 7.038941 AGGCTATACATTAAGTATCACAGGTCC 60.039 40.741 0.00 0.00 42.38 4.46
5138 6899 7.038941 GGCTATACATTAAGTATCACAGGTCCT 60.039 40.741 0.00 0.00 42.38 3.85
5139 6900 8.368668 GCTATACATTAAGTATCACAGGTCCTT 58.631 37.037 0.00 0.00 42.38 3.36
5142 6903 7.490657 ACATTAAGTATCACAGGTCCTTACA 57.509 36.000 0.00 0.00 0.00 2.41
5143 6904 7.913789 ACATTAAGTATCACAGGTCCTTACAA 58.086 34.615 0.00 0.00 0.00 2.41
5144 6905 8.380099 ACATTAAGTATCACAGGTCCTTACAAA 58.620 33.333 0.00 0.00 0.00 2.83
5145 6906 8.665685 CATTAAGTATCACAGGTCCTTACAAAC 58.334 37.037 0.00 0.00 0.00 2.93
5146 6907 5.818678 AGTATCACAGGTCCTTACAAACA 57.181 39.130 0.00 0.00 0.00 2.83
5147 6908 5.548406 AGTATCACAGGTCCTTACAAACAC 58.452 41.667 0.00 0.00 0.00 3.32
5148 6909 3.916359 TCACAGGTCCTTACAAACACA 57.084 42.857 0.00 0.00 0.00 3.72
5149 6910 3.537580 TCACAGGTCCTTACAAACACAC 58.462 45.455 0.00 0.00 0.00 3.82
5174 6935 9.178758 ACCCTTACAGAAAGATTGAAATACATC 57.821 33.333 0.00 0.00 37.38 3.06
5264 7028 8.815141 TTATCCATGTATTTTGTATGCATTGC 57.185 30.769 3.54 0.46 0.00 3.56
5272 7036 7.696035 TGTATTTTGTATGCATTGCTTACTTCG 59.304 33.333 25.87 0.00 39.09 3.79
5290 7054 0.955919 CGGGGAGAAGAACTTGTGGC 60.956 60.000 0.00 0.00 0.00 5.01
5291 7055 0.110486 GGGGAGAAGAACTTGTGGCA 59.890 55.000 0.00 0.00 0.00 4.92
5301 7065 1.538047 ACTTGTGGCAATGGCAGTAG 58.462 50.000 10.55 12.67 43.71 2.57
5316 7080 3.923461 GGCAGTAGCGATCATCTACATTC 59.077 47.826 18.68 10.15 43.41 2.67
5359 7123 7.625828 AAAAAGAATGTCCTAATAACCCTCG 57.374 36.000 0.00 0.00 0.00 4.63
5360 7124 4.338379 AGAATGTCCTAATAACCCTCGC 57.662 45.455 0.00 0.00 0.00 5.03
5361 7125 3.709653 AGAATGTCCTAATAACCCTCGCA 59.290 43.478 0.00 0.00 0.00 5.10
5362 7126 4.163458 AGAATGTCCTAATAACCCTCGCAA 59.837 41.667 0.00 0.00 0.00 4.85
5363 7127 3.985019 TGTCCTAATAACCCTCGCAAA 57.015 42.857 0.00 0.00 0.00 3.68
5364 7128 4.289238 TGTCCTAATAACCCTCGCAAAA 57.711 40.909 0.00 0.00 0.00 2.44
5365 7129 4.653868 TGTCCTAATAACCCTCGCAAAAA 58.346 39.130 0.00 0.00 0.00 1.94
5407 7171 6.885735 AAATTGCTTTATAAATGTCGCACC 57.114 33.333 8.82 0.00 0.00 5.01
5424 7188 3.057596 CGCACCCTTCATTAAAAAGCTCA 60.058 43.478 0.00 0.00 0.00 4.26
5463 7227 3.725740 GCTCACACTCACGTTGAAAATTG 59.274 43.478 0.00 0.00 0.00 2.32
5464 7228 3.690422 TCACACTCACGTTGAAAATTGC 58.310 40.909 0.00 0.00 0.00 3.56
5465 7229 3.376859 TCACACTCACGTTGAAAATTGCT 59.623 39.130 0.00 0.00 0.00 3.91
5466 7230 4.104776 CACACTCACGTTGAAAATTGCTT 58.895 39.130 0.00 0.00 0.00 3.91
5507 7751 7.396540 TCTTTTTGAGATATTTTGAGGAGGC 57.603 36.000 0.00 0.00 0.00 4.70
5508 7752 7.177878 TCTTTTTGAGATATTTTGAGGAGGCT 58.822 34.615 0.00 0.00 0.00 4.58
5512 7761 2.511218 AGATATTTTGAGGAGGCTGGCA 59.489 45.455 3.38 0.00 0.00 4.92
5534 7786 1.017387 CTAGATTGAGCCGCCCAAAC 58.983 55.000 0.00 0.00 0.00 2.93
5540 7792 2.282462 AGCCGCCCAAACAGAAGG 60.282 61.111 0.00 0.00 0.00 3.46
5601 7853 1.451927 GGCCGCATCTTCATGTCCA 60.452 57.895 0.00 0.00 31.86 4.02
5621 7873 1.076549 CCCAAGCCCAGCCTAACAA 59.923 57.895 0.00 0.00 0.00 2.83
5625 7877 0.251742 AAGCCCAGCCTAACAATGCA 60.252 50.000 0.00 0.00 0.00 3.96
5631 7883 1.089920 AGCCTAACAATGCAGCTTCG 58.910 50.000 0.00 0.00 0.00 3.79
5654 7906 0.384725 GCATATTCCGTCGCACATGC 60.385 55.000 0.00 0.00 37.78 4.06
5701 7958 3.412408 GGGCCCCACTCTCCTTCC 61.412 72.222 12.23 0.00 0.00 3.46
5705 7962 0.912006 GCCCCACTCTCCTTCCTCTT 60.912 60.000 0.00 0.00 0.00 2.85
5804 8075 2.268920 CCTCACCACCATCCACCG 59.731 66.667 0.00 0.00 0.00 4.94
6004 8284 3.121030 CAGCTGTACTGTGGCGCC 61.121 66.667 22.73 22.73 41.86 6.53
6005 8285 3.625897 AGCTGTACTGTGGCGCCA 61.626 61.111 29.03 29.03 0.00 5.69
6006 8286 3.423154 GCTGTACTGTGGCGCCAC 61.423 66.667 45.20 45.20 46.33 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.191128 AAGCCTCTGAAGAACGCAAT 57.809 45.000 2.84 0.00 0.00 3.56
1 2 2.831685 TAAGCCTCTGAAGAACGCAA 57.168 45.000 2.84 0.00 0.00 4.85
103 104 4.104102 TGGTCCCTTCTTTAGCAGAAAAGA 59.896 41.667 5.18 5.18 41.25 2.52
108 109 2.902608 TCTGGTCCCTTCTTTAGCAGA 58.097 47.619 0.00 0.00 43.39 4.26
329 331 5.654650 TCTTGCCCAAGAAGTTCAGTTTAAA 59.345 36.000 8.19 0.00 43.79 1.52
511 514 1.452110 TGATGTGACGGCTTTGATGG 58.548 50.000 0.00 0.00 0.00 3.51
586 589 1.624813 TCGGGTTAGGGTTCGACAATT 59.375 47.619 0.00 0.00 0.00 2.32
587 590 1.269012 TCGGGTTAGGGTTCGACAAT 58.731 50.000 0.00 0.00 0.00 2.71
612 616 2.281484 GTGCAAGGCCCAAGACGA 60.281 61.111 0.00 0.00 0.00 4.20
615 620 1.398958 GGTTTGTGCAAGGCCCAAGA 61.399 55.000 0.00 0.00 0.00 3.02
618 623 2.012824 TAGGGTTTGTGCAAGGCCCA 62.013 55.000 20.50 0.00 38.76 5.36
629 634 1.279749 GGGGGAGGACCTAGGGTTTG 61.280 65.000 14.81 0.00 35.25 2.93
691 699 3.191888 TCTCCTGCCCTCTCTACTTTT 57.808 47.619 0.00 0.00 0.00 2.27
695 703 1.960689 GTGATCTCCTGCCCTCTCTAC 59.039 57.143 0.00 0.00 0.00 2.59
696 704 1.477740 CGTGATCTCCTGCCCTCTCTA 60.478 57.143 0.00 0.00 0.00 2.43
737 750 4.695231 CGGTCGCCGTCGTTGAGT 62.695 66.667 9.69 0.00 42.73 3.41
765 778 2.572104 ACGCTAGGGTTTTCATCCTCTT 59.428 45.455 6.62 0.00 34.75 2.85
772 785 3.927555 CCTCACGCTAGGGTTTTCA 57.072 52.632 10.17 0.00 32.55 2.69
792 805 2.802816 CCACTTCGTCTCTTTCCTGTTG 59.197 50.000 0.00 0.00 0.00 3.33
794 807 2.317040 TCCACTTCGTCTCTTTCCTGT 58.683 47.619 0.00 0.00 0.00 4.00
795 808 3.386768 TTCCACTTCGTCTCTTTCCTG 57.613 47.619 0.00 0.00 0.00 3.86
796 809 3.578716 TCATTCCACTTCGTCTCTTTCCT 59.421 43.478 0.00 0.00 0.00 3.36
797 810 3.680458 GTCATTCCACTTCGTCTCTTTCC 59.320 47.826 0.00 0.00 0.00 3.13
798 811 3.680458 GGTCATTCCACTTCGTCTCTTTC 59.320 47.826 0.00 0.00 35.97 2.62
799 812 3.071023 TGGTCATTCCACTTCGTCTCTTT 59.929 43.478 0.00 0.00 41.93 2.52
800 813 2.632996 TGGTCATTCCACTTCGTCTCTT 59.367 45.455 0.00 0.00 41.93 2.85
801 814 2.248248 TGGTCATTCCACTTCGTCTCT 58.752 47.619 0.00 0.00 41.93 3.10
802 815 2.743636 TGGTCATTCCACTTCGTCTC 57.256 50.000 0.00 0.00 41.93 3.36
811 824 7.654022 TCTATATATATGCGTGGTCATTCCA 57.346 36.000 5.44 0.00 45.01 3.53
812 825 7.116948 GCATCTATATATATGCGTGGTCATTCC 59.883 40.741 15.02 0.00 39.15 3.01
813 826 8.012151 GCATCTATATATATGCGTGGTCATTC 57.988 38.462 15.02 0.00 39.15 2.67
814 827 7.953158 GCATCTATATATATGCGTGGTCATT 57.047 36.000 15.02 0.00 39.15 2.57
831 844 9.751542 GCAAGTCTAATATATTACCGCATCTAT 57.248 33.333 0.81 0.00 0.00 1.98
832 845 8.745590 TGCAAGTCTAATATATTACCGCATCTA 58.254 33.333 0.81 0.00 0.00 1.98
833 846 7.545965 GTGCAAGTCTAATATATTACCGCATCT 59.454 37.037 12.61 1.35 0.00 2.90
834 847 7.330946 TGTGCAAGTCTAATATATTACCGCATC 59.669 37.037 12.61 9.12 0.00 3.91
835 848 7.158697 TGTGCAAGTCTAATATATTACCGCAT 58.841 34.615 12.61 0.00 0.00 4.73
836 849 6.517605 TGTGCAAGTCTAATATATTACCGCA 58.482 36.000 0.81 5.34 0.00 5.69
837 850 6.645415 ACTGTGCAAGTCTAATATATTACCGC 59.355 38.462 0.81 3.09 31.64 5.68
855 868 2.894879 GTGTGGTGCGACTGTGCA 60.895 61.111 0.00 1.65 43.95 4.57
856 869 2.588877 AGTGTGGTGCGACTGTGC 60.589 61.111 0.00 0.00 0.00 4.57
857 870 2.246739 CCAGTGTGGTGCGACTGTG 61.247 63.158 0.00 0.00 38.35 3.66
858 871 2.108976 CCAGTGTGGTGCGACTGT 59.891 61.111 0.00 0.00 38.35 3.55
859 872 2.666190 CCCAGTGTGGTGCGACTG 60.666 66.667 0.00 0.00 39.51 3.51
860 873 4.626081 GCCCAGTGTGGTGCGACT 62.626 66.667 0.00 0.00 35.17 4.18
865 878 2.927201 AAACCAGGCCCAGTGTGGTG 62.927 60.000 13.98 0.00 44.07 4.17
866 879 2.236959 AAAACCAGGCCCAGTGTGGT 62.237 55.000 7.79 7.79 46.93 4.16
867 880 1.457455 AAAACCAGGCCCAGTGTGG 60.457 57.895 6.43 6.43 37.25 4.17
919 932 0.669318 TTTGTGGATCTGCGGACGAC 60.669 55.000 0.00 0.34 0.00 4.34
920 933 0.034198 TTTTGTGGATCTGCGGACGA 59.966 50.000 0.00 0.00 0.00 4.20
922 935 1.234821 TGTTTTGTGGATCTGCGGAC 58.765 50.000 0.00 0.00 0.00 4.79
928 941 1.340991 CCCCCGATGTTTTGTGGATCT 60.341 52.381 0.00 0.00 0.00 2.75
967 980 1.004979 CGGTAATTTGGGTCTGGGGAA 59.995 52.381 0.00 0.00 0.00 3.97
968 981 0.621609 CGGTAATTTGGGTCTGGGGA 59.378 55.000 0.00 0.00 0.00 4.81
972 985 2.355756 CTGATGCGGTAATTTGGGTCTG 59.644 50.000 0.00 0.00 0.00 3.51
973 986 2.238646 TCTGATGCGGTAATTTGGGTCT 59.761 45.455 0.00 0.00 0.00 3.85
974 987 2.354821 GTCTGATGCGGTAATTTGGGTC 59.645 50.000 0.00 0.00 0.00 4.46
975 988 2.290641 TGTCTGATGCGGTAATTTGGGT 60.291 45.455 0.00 0.00 0.00 4.51
996 1009 2.351276 GGAATGGGTGTGCCGTCT 59.649 61.111 0.00 0.00 34.97 4.18
997 1010 2.033448 TGGAATGGGTGTGCCGTC 59.967 61.111 0.00 0.00 34.97 4.79
998 1011 2.034066 CTGGAATGGGTGTGCCGT 59.966 61.111 0.00 0.00 34.97 5.68
999 1012 0.322098 TAACTGGAATGGGTGTGCCG 60.322 55.000 0.00 0.00 34.97 5.69
1010 1023 1.414919 CGGGGATTCGGATAACTGGAA 59.585 52.381 0.00 0.00 0.00 3.53
1205 1244 0.907704 TGGGGATGTGGTCGTAGCTT 60.908 55.000 0.00 0.00 0.00 3.74
1335 1377 4.815489 CCATGGCAGGCAGGATAG 57.185 61.111 10.73 0.00 0.00 2.08
1368 1430 0.248843 GCTAACAGGAGTGAGCTGCT 59.751 55.000 0.00 0.00 46.95 4.24
1369 1431 2.761071 GCTAACAGGAGTGAGCTGC 58.239 57.895 0.00 0.00 46.95 5.25
1373 1435 0.459237 CGGCAGCTAACAGGAGTGAG 60.459 60.000 0.00 0.00 0.00 3.51
1374 1436 0.898326 TCGGCAGCTAACAGGAGTGA 60.898 55.000 0.00 0.00 0.00 3.41
1375 1437 0.037326 TTCGGCAGCTAACAGGAGTG 60.037 55.000 0.00 0.00 0.00 3.51
1376 1438 0.685097 TTTCGGCAGCTAACAGGAGT 59.315 50.000 0.00 0.00 0.00 3.85
1377 1439 2.029838 ATTTCGGCAGCTAACAGGAG 57.970 50.000 0.00 0.00 0.00 3.69
1378 1440 3.838244 ATATTTCGGCAGCTAACAGGA 57.162 42.857 0.00 0.00 0.00 3.86
1379 1441 4.632153 AGTATATTTCGGCAGCTAACAGG 58.368 43.478 0.00 0.00 0.00 4.00
1380 1442 5.533482 AGAGTATATTTCGGCAGCTAACAG 58.467 41.667 0.00 0.00 0.00 3.16
1381 1443 5.531122 AGAGTATATTTCGGCAGCTAACA 57.469 39.130 0.00 0.00 0.00 2.41
1382 1444 6.072064 TCCTAGAGTATATTTCGGCAGCTAAC 60.072 42.308 0.00 0.00 0.00 2.34
1383 1445 6.008331 TCCTAGAGTATATTTCGGCAGCTAA 58.992 40.000 0.00 0.00 0.00 3.09
1384 1446 5.567430 TCCTAGAGTATATTTCGGCAGCTA 58.433 41.667 0.00 0.00 0.00 3.32
1385 1447 4.408276 TCCTAGAGTATATTTCGGCAGCT 58.592 43.478 0.00 0.00 0.00 4.24
1386 1448 4.218852 ACTCCTAGAGTATATTTCGGCAGC 59.781 45.833 0.00 0.00 41.51 5.25
1416 1478 6.032775 CAGCGCATAGTTTATTCACAAAACTG 59.967 38.462 11.47 0.00 44.67 3.16
1437 1499 1.324736 GCAGAATTAAGACGGACAGCG 59.675 52.381 0.00 0.00 0.00 5.18
1439 1501 3.589988 ACAGCAGAATTAAGACGGACAG 58.410 45.455 0.00 0.00 0.00 3.51
1460 1522 5.198207 TGGAGGTCTGATTATGACGAGTTA 58.802 41.667 0.00 0.00 35.45 2.24
1466 1528 5.041191 ACCATTGGAGGTCTGATTATGAC 57.959 43.478 10.37 0.00 37.28 3.06
1507 1575 9.669353 CATCACCTGTACAGATAATATTTTTGC 57.331 33.333 24.68 0.00 0.00 3.68
1530 1598 7.115378 CCAGCAACTTAACTTGAAACAATCATC 59.885 37.037 0.00 0.00 38.03 2.92
1552 1620 3.182967 CTGTCTGAATCTACGAACCAGC 58.817 50.000 0.00 0.00 0.00 4.85
1638 1706 6.257849 CGCTTTACATACATGGTTCTGTACAT 59.742 38.462 0.00 0.00 34.59 2.29
1645 1713 4.527564 GATGCGCTTTACATACATGGTTC 58.472 43.478 9.73 0.00 0.00 3.62
1662 1758 4.793071 AGAAGTATCTCATCTTCGATGCG 58.207 43.478 0.00 0.00 43.07 4.73
1801 3213 2.107204 GACCATCCATAGCCCATTGACT 59.893 50.000 0.00 0.00 0.00 3.41
2041 3463 3.967987 ACCTAGGAAGATAAAGCGTGGAT 59.032 43.478 17.98 0.00 0.00 3.41
2046 3468 3.385111 AGACCACCTAGGAAGATAAAGCG 59.615 47.826 17.98 0.00 41.22 4.68
2085 3508 9.423061 TGTGTCATATGAGGACATTTTATATCG 57.577 33.333 5.42 0.00 46.01 2.92
2147 3574 4.666512 ACAATTGCTTATCCCTCACAAGT 58.333 39.130 5.05 0.00 0.00 3.16
2150 3577 4.227300 AGGTACAATTGCTTATCCCTCACA 59.773 41.667 5.05 0.00 0.00 3.58
2202 3630 0.387239 GCCTTAAAGCCGCACACAAG 60.387 55.000 0.00 0.00 0.00 3.16
2900 4334 6.864421 TCTTCTATATCCTTTCCCTGCTCTA 58.136 40.000 0.00 0.00 0.00 2.43
2942 4376 1.688772 ACAGCAATGATGGCAGATCC 58.311 50.000 2.82 0.00 0.00 3.36
3018 4452 8.970691 ATAAATTCAGTGTTGCACATAAGAAC 57.029 30.769 2.01 0.00 36.74 3.01
3065 4499 4.095334 AGGACAACGAAAACACAAGGTTAC 59.905 41.667 0.00 0.00 39.29 2.50
3189 4623 3.921677 AGTACGTACCATTGTTCCTGTG 58.078 45.455 21.80 0.00 0.00 3.66
3209 4643 8.545229 TGGAAAATGGCATGTTAACAATTAAG 57.455 30.769 13.23 2.07 0.00 1.85
3210 4644 9.512588 AATGGAAAATGGCATGTTAACAATTAA 57.487 25.926 13.23 0.00 0.00 1.40
3260 4733 3.944015 GCAGCACAGAGAATAGGAATGTT 59.056 43.478 0.00 0.00 0.00 2.71
3262 4735 3.538591 TGCAGCACAGAGAATAGGAATG 58.461 45.455 0.00 0.00 0.00 2.67
3264 4737 3.701205 TTGCAGCACAGAGAATAGGAA 57.299 42.857 0.00 0.00 0.00 3.36
3308 4781 0.674895 AGGCATCAGTTTCAGACGCC 60.675 55.000 0.00 0.00 38.36 5.68
3311 4784 3.959573 GCATAGGCATCAGTTTCAGAC 57.040 47.619 0.00 0.00 40.72 3.51
3344 4817 8.644374 ACAAAAGACAAGGGCTTACATTAATA 57.356 30.769 0.00 0.00 0.00 0.98
3361 4834 6.706270 TCCAGTTAATCTGAGTGACAAAAGAC 59.294 38.462 2.93 0.00 46.27 3.01
3365 4838 7.054124 AGTTTCCAGTTAATCTGAGTGACAAA 58.946 34.615 2.93 0.00 46.27 2.83
3391 4864 3.181469 GGGCACGATAGAAAGGTATGTCA 60.181 47.826 0.00 0.00 41.38 3.58
3419 4892 9.849607 CACAAGATATGACGAATTATGTGTAAC 57.150 33.333 0.00 0.00 32.99 2.50
3442 4915 5.129634 ACCCAATATGCAAATATCGACACA 58.870 37.500 0.00 0.00 0.00 3.72
3447 4920 5.703978 TCCAACCCAATATGCAAATATCG 57.296 39.130 0.00 0.00 0.00 2.92
3461 4934 1.646912 TAGTTCGTGGATCCAACCCA 58.353 50.000 18.20 0.00 0.00 4.51
3474 4947 6.073548 GGGATCACTAATGCAAAGATAGTTCG 60.074 42.308 6.45 0.00 0.00 3.95
3482 4955 3.624777 ACAGGGGATCACTAATGCAAAG 58.375 45.455 0.00 0.00 0.00 2.77
3492 4965 5.593095 GGGACTAATAAAAACAGGGGATCAC 59.407 44.000 0.00 0.00 0.00 3.06
3499 4972 3.699538 GCCCTGGGACTAATAAAAACAGG 59.300 47.826 19.27 0.00 42.70 4.00
3512 4985 6.014669 TGCAAAATATAAATATGCCCTGGGAC 60.015 38.462 19.27 8.65 36.20 4.46
3513 4986 6.080682 TGCAAAATATAAATATGCCCTGGGA 58.919 36.000 19.27 1.59 36.20 4.37
3577 5052 9.903682 CAAAAACTTCTGAACAGTCATGATATT 57.096 29.630 0.00 0.00 31.85 1.28
3587 5062 6.091169 ACATTTGTGCAAAAACTTCTGAACAG 59.909 34.615 3.61 0.00 32.62 3.16
3632 5107 4.008916 ACCCCAGGAGCTAAGAAGAATA 57.991 45.455 0.00 0.00 0.00 1.75
3634 5109 2.344093 ACCCCAGGAGCTAAGAAGAA 57.656 50.000 0.00 0.00 0.00 2.52
3638 5113 3.914435 ACTAAAAACCCCAGGAGCTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
3639 5114 4.019231 AGACTAAAAACCCCAGGAGCTAAG 60.019 45.833 0.00 0.00 0.00 2.18
3641 5116 3.527937 AGACTAAAAACCCCAGGAGCTA 58.472 45.455 0.00 0.00 0.00 3.32
3645 5120 5.034200 TGCTATAGACTAAAAACCCCAGGA 58.966 41.667 3.21 0.00 0.00 3.86
3647 5122 5.990668 ACTGCTATAGACTAAAAACCCCAG 58.009 41.667 3.21 0.00 0.00 4.45
3661 5136 9.740239 ATGTGCAAAATATTCAAACTGCTATAG 57.260 29.630 0.00 0.00 0.00 1.31
3685 5160 9.090692 GGAAATATGAAGGAACACAATCAAATG 57.909 33.333 0.00 0.00 0.00 2.32
3713 5188 6.403527 GCCAACTGAACTTTGCTTCAATTTTT 60.404 34.615 0.00 0.00 29.66 1.94
3733 5208 0.947244 CAGACACAACTCCAGCCAAC 59.053 55.000 0.00 0.00 0.00 3.77
3748 5223 4.761739 AGAGTAGCATCTCTGATAGCAGAC 59.238 45.833 6.59 0.00 45.88 3.51
3778 5253 9.316859 CAGGCAAAAGCTTAAAAATAAAAATCG 57.683 29.630 0.00 0.00 0.00 3.34
3780 5255 8.628280 TGCAGGCAAAAGCTTAAAAATAAAAAT 58.372 25.926 0.00 0.00 0.00 1.82
3783 5258 6.017523 GGTGCAGGCAAAAGCTTAAAAATAAA 60.018 34.615 0.00 0.00 0.00 1.40
3786 5261 3.814842 GGTGCAGGCAAAAGCTTAAAAAT 59.185 39.130 0.00 0.00 0.00 1.82
3788 5263 2.433970 AGGTGCAGGCAAAAGCTTAAAA 59.566 40.909 0.00 0.00 0.00 1.52
3789 5264 2.038659 AGGTGCAGGCAAAAGCTTAAA 58.961 42.857 0.00 0.00 0.00 1.52
3790 5265 1.703411 AGGTGCAGGCAAAAGCTTAA 58.297 45.000 0.00 0.00 0.00 1.85
3791 5266 1.703411 AAGGTGCAGGCAAAAGCTTA 58.297 45.000 0.00 0.00 30.28 3.09
3792 5267 0.832626 AAAGGTGCAGGCAAAAGCTT 59.167 45.000 0.00 0.00 33.28 3.74
3802 5277 2.648059 CCCTTAGGATGAAAGGTGCAG 58.352 52.381 0.00 0.00 41.72 4.41
3815 5290 9.475620 AATAAAGTTAATTCAAGACCCCTTAGG 57.524 33.333 0.00 0.00 43.78 2.69
3833 5308 8.730680 CATGGCTCACTAAACACTAATAAAGTT 58.269 33.333 0.00 0.00 35.76 2.66
3838 5313 8.100791 AGTTTCATGGCTCACTAAACACTAATA 58.899 33.333 6.67 0.00 33.52 0.98
3839 5314 6.942576 AGTTTCATGGCTCACTAAACACTAAT 59.057 34.615 6.67 0.00 33.52 1.73
3840 5315 6.204688 CAGTTTCATGGCTCACTAAACACTAA 59.795 38.462 6.67 0.00 33.52 2.24
3841 5316 5.700832 CAGTTTCATGGCTCACTAAACACTA 59.299 40.000 6.67 0.00 33.52 2.74
3842 5317 4.516698 CAGTTTCATGGCTCACTAAACACT 59.483 41.667 6.67 0.00 33.52 3.55
3854 5329 2.027192 TCTGTAGGTCCAGTTTCATGGC 60.027 50.000 0.00 0.00 40.41 4.40
3868 5343 6.320418 AGGTAAAAACAACCAACTTCTGTAGG 59.680 38.462 0.00 0.00 39.64 3.18
3872 5347 6.094881 TGAGAGGTAAAAACAACCAACTTCTG 59.905 38.462 0.00 0.00 39.64 3.02
3875 5350 6.095021 GTCTGAGAGGTAAAAACAACCAACTT 59.905 38.462 0.00 0.00 39.64 2.66
3885 5360 3.391296 ACCTGCAGTCTGAGAGGTAAAAA 59.609 43.478 18.14 0.00 37.04 1.94
3906 5381 1.669211 GCGGAGTCTGTGAAGGTGTAC 60.669 57.143 0.00 0.00 0.00 2.90
3907 5382 0.601558 GCGGAGTCTGTGAAGGTGTA 59.398 55.000 0.00 0.00 0.00 2.90
3915 5390 2.128035 GATTTATCGGCGGAGTCTGTG 58.872 52.381 7.21 0.00 0.00 3.66
3916 5391 1.754803 TGATTTATCGGCGGAGTCTGT 59.245 47.619 7.21 0.00 0.00 3.41
3919 5394 2.218953 TGTGATTTATCGGCGGAGTC 57.781 50.000 7.21 0.74 0.00 3.36
3925 5400 3.411446 TCATCCCATGTGATTTATCGGC 58.589 45.455 0.00 0.00 0.00 5.54
3926 5401 4.456911 CCTTCATCCCATGTGATTTATCGG 59.543 45.833 0.00 0.00 0.00 4.18
3927 5402 5.308014 TCCTTCATCCCATGTGATTTATCG 58.692 41.667 0.00 0.00 0.00 2.92
3932 5407 4.079038 TGGAATCCTTCATCCCATGTGATT 60.079 41.667 0.00 0.00 34.68 2.57
3933 5408 3.464456 TGGAATCCTTCATCCCATGTGAT 59.536 43.478 0.00 0.00 34.68 3.06
3934 5409 2.851821 TGGAATCCTTCATCCCATGTGA 59.148 45.455 0.00 0.00 34.68 3.58
3935 5410 3.301794 TGGAATCCTTCATCCCATGTG 57.698 47.619 0.00 0.00 34.68 3.21
3939 5414 3.533068 AGGAAATGGAATCCTTCATCCCA 59.467 43.478 13.07 0.00 45.06 4.37
3961 5436 4.280425 TGCCAATAGTCATGTTGCTTTGAA 59.720 37.500 0.00 0.00 0.00 2.69
3963 5438 4.177165 TGCCAATAGTCATGTTGCTTTG 57.823 40.909 0.00 0.00 0.00 2.77
3964 5439 5.047164 TCAATGCCAATAGTCATGTTGCTTT 60.047 36.000 0.00 0.00 0.00 3.51
3971 5446 9.622004 GAATAAAGATCAATGCCAATAGTCATG 57.378 33.333 0.00 0.00 0.00 3.07
3980 5455 7.878547 TGTGTATGAATAAAGATCAATGCCA 57.121 32.000 0.00 0.00 0.00 4.92
3997 5472 9.046296 AGTCAGACTAAACTCTTTTTGTGTATG 57.954 33.333 0.00 0.00 31.80 2.39
4000 5475 7.541122 GAGTCAGACTAAACTCTTTTTGTGT 57.459 36.000 2.00 0.00 39.06 3.72
4041 5750 4.444056 GCTTTGCTTCGCTGTAAAATCAAA 59.556 37.500 0.00 0.00 0.00 2.69
4045 5754 2.295909 TGGCTTTGCTTCGCTGTAAAAT 59.704 40.909 0.00 0.00 0.00 1.82
4048 5757 1.266718 CTTGGCTTTGCTTCGCTGTAA 59.733 47.619 0.00 0.00 0.00 2.41
4065 5774 7.592938 TGCTAAGATTGATTGTGTAAACCTTG 58.407 34.615 0.00 0.00 0.00 3.61
4077 5786 4.456911 CCATACGCCATGCTAAGATTGATT 59.543 41.667 0.00 0.00 32.84 2.57
4101 5810 0.606604 AAAGAAGCATTGCAGCCTGG 59.393 50.000 11.91 0.00 34.23 4.45
4194 5903 6.089476 CGTGTCAGAGTCATATATCCATGTC 58.911 44.000 0.00 0.00 0.00 3.06
4273 5982 0.251165 CGGATTTGTGGACCTTGGGT 60.251 55.000 0.00 0.00 39.44 4.51
4300 6009 4.761739 ACCTTAATCCACATATCAATGGCG 59.238 41.667 0.00 0.00 37.43 5.69
4329 6038 1.425448 AGTGAAAGGAAGAGTTGGGGG 59.575 52.381 0.00 0.00 0.00 5.40
4330 6039 2.959465 AGTGAAAGGAAGAGTTGGGG 57.041 50.000 0.00 0.00 0.00 4.96
4331 6040 4.911390 ACATAGTGAAAGGAAGAGTTGGG 58.089 43.478 0.00 0.00 0.00 4.12
4332 6041 6.672147 CAAACATAGTGAAAGGAAGAGTTGG 58.328 40.000 0.00 0.00 0.00 3.77
4340 6049 7.168219 AGTTAGATGCAAACATAGTGAAAGGA 58.832 34.615 0.00 0.00 36.35 3.36
4342 6051 8.032952 TGAGTTAGATGCAAACATAGTGAAAG 57.967 34.615 0.00 0.00 36.35 2.62
4345 6054 6.070824 TCCTGAGTTAGATGCAAACATAGTGA 60.071 38.462 0.00 0.00 36.35 3.41
4348 6057 5.525378 GGTCCTGAGTTAGATGCAAACATAG 59.475 44.000 0.00 0.00 36.35 2.23
4354 6063 3.264193 ACATGGTCCTGAGTTAGATGCAA 59.736 43.478 0.00 0.00 0.00 4.08
4356 6065 3.550437 ACATGGTCCTGAGTTAGATGC 57.450 47.619 0.00 0.00 0.00 3.91
4362 6071 2.289444 CCGTGTAACATGGTCCTGAGTT 60.289 50.000 0.00 0.00 35.92 3.01
4372 6081 1.144969 AAGCACGACCGTGTAACATG 58.855 50.000 21.38 0.00 46.90 3.21
4373 6082 1.529438 CAAAGCACGACCGTGTAACAT 59.471 47.619 21.38 4.12 46.90 2.71
4374 6083 0.931702 CAAAGCACGACCGTGTAACA 59.068 50.000 21.38 0.00 46.90 2.41
4375 6084 0.383860 GCAAAGCACGACCGTGTAAC 60.384 55.000 21.38 7.35 46.90 2.50
4377 6086 1.227292 TGCAAAGCACGACCGTGTA 60.227 52.632 21.38 2.19 46.90 2.90
4378 6087 2.512745 TGCAAAGCACGACCGTGT 60.513 55.556 21.38 7.85 46.90 4.49
4387 6098 7.432869 ACAAAATAAATACTCAGTGCAAAGCA 58.567 30.769 0.00 0.00 35.60 3.91
4388 6099 7.062255 GGACAAAATAAATACTCAGTGCAAAGC 59.938 37.037 0.00 0.00 0.00 3.51
4391 6102 7.446931 TGAGGACAAAATAAATACTCAGTGCAA 59.553 33.333 0.00 0.00 0.00 4.08
4400 6111 8.825667 TTTTGCCTTGAGGACAAAATAAATAC 57.174 30.769 19.26 0.00 41.54 1.89
4406 6117 4.502087 GCTCTTTTGCCTTGAGGACAAAAT 60.502 41.667 21.46 0.00 43.33 1.82
4407 6118 3.181476 GCTCTTTTGCCTTGAGGACAAAA 60.181 43.478 20.65 20.65 42.77 2.44
4411 6122 1.538950 CAGCTCTTTTGCCTTGAGGAC 59.461 52.381 0.06 0.00 37.39 3.85
4412 6123 1.546323 CCAGCTCTTTTGCCTTGAGGA 60.546 52.381 0.06 0.00 37.39 3.71
4415 6126 1.421268 TCTCCAGCTCTTTTGCCTTGA 59.579 47.619 0.00 0.00 0.00 3.02
4416 6127 1.538950 GTCTCCAGCTCTTTTGCCTTG 59.461 52.381 0.00 0.00 0.00 3.61
4417 6128 1.143684 TGTCTCCAGCTCTTTTGCCTT 59.856 47.619 0.00 0.00 0.00 4.35
4590 6301 1.632948 GCGGTACCTTCGGCTTGAAC 61.633 60.000 10.90 0.00 31.87 3.18
4608 6319 1.546029 CAAGACAAGGGGCTAAAAGGC 59.454 52.381 0.00 0.00 40.51 4.35
4630 6341 6.533723 GCATTACATAAATCATGCATGGATGG 59.466 38.462 25.97 11.53 41.47 3.51
4640 6351 2.487762 CCCGCGGCATTACATAAATCAT 59.512 45.455 22.85 0.00 0.00 2.45
4663 6374 4.697756 TCAGCGCAAAGTCCCCCG 62.698 66.667 11.47 0.00 0.00 5.73
4664 6375 3.056328 GTCAGCGCAAAGTCCCCC 61.056 66.667 11.47 0.00 0.00 5.40
4669 6380 0.246635 AGTATCGGTCAGCGCAAAGT 59.753 50.000 11.47 0.00 0.00 2.66
4687 6398 1.080705 GTCCTGGTCCACGACGAAG 60.081 63.158 0.00 0.00 32.65 3.79
4786 6497 1.227263 CTATCTTGGTGCGGTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
4798 6509 2.287373 CGTCCGCGTTCTAGTCTATCTT 59.713 50.000 4.92 0.00 0.00 2.40
4815 6526 0.664767 GTCGCCTGAGCATATCGTCC 60.665 60.000 0.00 0.00 39.83 4.79
4868 6579 4.808414 TCTATTCCAGACAACAGACAGG 57.192 45.455 0.00 0.00 0.00 4.00
4872 6583 5.594317 TCGATCATCTATTCCAGACAACAGA 59.406 40.000 0.00 0.00 35.62 3.41
4895 6606 0.521735 GCAAAGTTCACATCGGGGTC 59.478 55.000 0.00 0.00 0.00 4.46
4898 6609 0.950836 TGTGCAAAGTTCACATCGGG 59.049 50.000 0.00 0.00 39.29 5.14
4947 6658 3.951037 AGTTGGCAAAATTTTGGGGTTTC 59.049 39.130 27.60 12.71 38.57 2.78
4948 6659 3.951037 GAGTTGGCAAAATTTTGGGGTTT 59.049 39.130 27.60 0.00 38.57 3.27
4972 6731 9.261180 CAAGTCTTATCACTTCTTCTACAAACA 57.739 33.333 0.00 0.00 34.17 2.83
5089 6850 2.969628 TGCCTTTCCGCAAAAGAAAA 57.030 40.000 9.54 0.00 46.18 2.29
5090 6851 2.363680 TCATGCCTTTCCGCAAAAGAAA 59.636 40.909 9.54 0.24 46.18 2.52
5091 6852 1.959985 TCATGCCTTTCCGCAAAAGAA 59.040 42.857 9.54 0.05 46.18 2.52
5092 6853 1.541147 CTCATGCCTTTCCGCAAAAGA 59.459 47.619 9.54 0.00 46.18 2.52
5093 6854 1.403249 CCTCATGCCTTTCCGCAAAAG 60.403 52.381 2.33 2.33 43.24 2.27
5094 6855 0.602562 CCTCATGCCTTTCCGCAAAA 59.397 50.000 0.00 0.00 43.24 2.44
5095 6856 1.876497 GCCTCATGCCTTTCCGCAAA 61.876 55.000 0.00 0.00 43.24 3.68
5099 6860 2.224281 TGTATAGCCTCATGCCTTTCCG 60.224 50.000 0.00 0.00 42.71 4.30
5101 6862 6.712547 ACTTAATGTATAGCCTCATGCCTTTC 59.287 38.462 0.00 0.00 42.71 2.62
5110 6871 7.897864 ACCTGTGATACTTAATGTATAGCCTC 58.102 38.462 0.00 0.00 41.55 4.70
5119 6880 8.665685 GTTTGTAAGGACCTGTGATACTTAATG 58.334 37.037 0.00 0.00 0.00 1.90
5126 6887 5.302360 GTGTGTTTGTAAGGACCTGTGATA 58.698 41.667 0.00 0.00 0.00 2.15
5131 6892 2.158667 AGGGTGTGTTTGTAAGGACCTG 60.159 50.000 0.00 0.00 0.00 4.00
5132 6893 2.132686 AGGGTGTGTTTGTAAGGACCT 58.867 47.619 0.00 0.00 0.00 3.85
5136 6897 4.710324 TCTGTAAGGGTGTGTTTGTAAGG 58.290 43.478 0.00 0.00 0.00 2.69
5137 6898 6.540914 TCTTTCTGTAAGGGTGTGTTTGTAAG 59.459 38.462 0.00 0.00 34.46 2.34
5138 6899 6.416415 TCTTTCTGTAAGGGTGTGTTTGTAA 58.584 36.000 0.00 0.00 34.46 2.41
5139 6900 5.991861 TCTTTCTGTAAGGGTGTGTTTGTA 58.008 37.500 0.00 0.00 34.46 2.41
5140 6901 4.850680 TCTTTCTGTAAGGGTGTGTTTGT 58.149 39.130 0.00 0.00 34.46 2.83
5141 6902 6.039270 TCAATCTTTCTGTAAGGGTGTGTTTG 59.961 38.462 0.00 0.00 34.46 2.93
5142 6903 6.126409 TCAATCTTTCTGTAAGGGTGTGTTT 58.874 36.000 0.00 0.00 34.46 2.83
5143 6904 5.690865 TCAATCTTTCTGTAAGGGTGTGTT 58.309 37.500 0.00 0.00 34.46 3.32
5144 6905 5.304686 TCAATCTTTCTGTAAGGGTGTGT 57.695 39.130 0.00 0.00 34.46 3.72
5145 6906 6.633500 TTTCAATCTTTCTGTAAGGGTGTG 57.367 37.500 0.00 0.00 34.46 3.82
5146 6907 7.942341 TGTATTTCAATCTTTCTGTAAGGGTGT 59.058 33.333 0.00 0.00 34.46 4.16
5147 6908 8.335532 TGTATTTCAATCTTTCTGTAAGGGTG 57.664 34.615 0.00 0.00 34.46 4.61
5148 6909 9.178758 GATGTATTTCAATCTTTCTGTAAGGGT 57.821 33.333 0.00 0.00 34.46 4.34
5149 6910 9.401058 AGATGTATTTCAATCTTTCTGTAAGGG 57.599 33.333 0.00 0.00 34.46 3.95
5272 7036 0.110486 TGCCACAAGTTCTTCTCCCC 59.890 55.000 0.00 0.00 0.00 4.81
5282 7046 1.538047 CTACTGCCATTGCCACAAGT 58.462 50.000 0.00 0.00 36.33 3.16
5290 7054 2.763933 AGATGATCGCTACTGCCATTG 58.236 47.619 0.00 0.00 35.36 2.82
5291 7055 3.321968 TGTAGATGATCGCTACTGCCATT 59.678 43.478 19.92 0.00 39.13 3.16
5381 7145 9.030301 GGTGCGACATTTATAAAGCAATTTTAT 57.970 29.630 10.42 0.00 42.94 1.40
5382 7146 7.489757 GGGTGCGACATTTATAAAGCAATTTTA 59.510 33.333 10.42 0.00 36.32 1.52
5383 7147 6.312672 GGGTGCGACATTTATAAAGCAATTTT 59.687 34.615 10.42 0.00 36.32 1.82
5400 7164 3.057526 AGCTTTTTAATGAAGGGTGCGAC 60.058 43.478 0.00 0.00 0.00 5.19
5403 7167 4.519540 TGAGCTTTTTAATGAAGGGTGC 57.480 40.909 0.00 0.00 0.00 5.01
5435 7199 1.220529 ACGTGAGTGTGAGCATGTTG 58.779 50.000 0.00 0.00 46.97 3.33
5466 7230 7.919151 TCAAAAAGAAAAACCCCTCCTAAAAA 58.081 30.769 0.00 0.00 0.00 1.94
5507 7751 3.003740 GCTCAATCTAGCCTGCCAG 57.996 57.895 0.00 0.00 36.45 4.85
5534 7786 1.066908 GGAGATGAGACGAGCCTTCTG 59.933 57.143 0.00 0.00 0.00 3.02
5540 7792 2.026879 GCCGGAGATGAGACGAGC 59.973 66.667 5.05 0.00 0.00 5.03
5580 7832 3.282157 CATGAAGATGCGGCCCGG 61.282 66.667 4.77 0.00 0.00 5.73
5601 7853 2.941025 TTAGGCTGGGCTTGGGCT 60.941 61.111 0.00 0.00 41.23 5.19
5625 7877 1.598130 GGAATATGCGCCCGAAGCT 60.598 57.895 4.18 0.00 40.39 3.74
5631 7883 3.712881 GCGACGGAATATGCGCCC 61.713 66.667 4.18 0.00 43.33 6.13
5654 7906 0.882927 TGTTTTCTCCGTTCGGGCTG 60.883 55.000 11.37 3.01 34.94 4.85
5701 7958 2.351276 CGTTGGGGTGGGGAAGAG 59.649 66.667 0.00 0.00 0.00 2.85
5777 8048 4.675303 TGGTGAGGGAGGGTGGGG 62.675 72.222 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.