Multiple sequence alignment - TraesCS1B01G471800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G471800 chr1B 100.000 2969 0 0 1 2969 679721858 679724826 0.000000e+00 5483.0
1 TraesCS1B01G471800 chr1B 90.583 446 37 5 2527 2969 679222903 679222460 1.190000e-163 586.0
2 TraesCS1B01G471800 chr1B 90.359 446 38 5 2527 2969 679247394 679246951 5.520000e-162 580.0
3 TraesCS1B01G471800 chr1B 89.888 445 40 4 2527 2969 679171690 679171249 4.290000e-158 568.0
4 TraesCS1B01G471800 chr1B 79.777 539 61 32 800 1318 679744791 679745301 6.090000e-92 348.0
5 TraesCS1B01G471800 chr1B 78.511 470 54 27 866 1313 681807380 681807824 6.310000e-67 265.0
6 TraesCS1B01G471800 chr1B 79.459 370 38 20 1888 2238 679717497 679717847 8.280000e-56 228.0
7 TraesCS1B01G471800 chr1A 88.938 1573 97 36 577 2113 586937176 586938707 0.000000e+00 1869.0
8 TraesCS1B01G471800 chr1A 87.870 338 32 7 984 1318 586950112 586950443 3.590000e-104 388.0
9 TraesCS1B01G471800 chr1A 88.142 253 14 4 2098 2347 586942550 586942789 1.350000e-73 287.0
10 TraesCS1B01G471800 chr1A 82.222 225 23 10 348 562 586936827 586937044 8.460000e-41 178.0
11 TraesCS1B01G471800 chr1A 80.282 142 15 6 813 947 586949906 586950041 8.760000e-16 95.3
12 TraesCS1B01G471800 chr1D 93.159 804 34 5 1445 2239 487910845 487911636 0.000000e+00 1160.0
13 TraesCS1B01G471800 chr1D 92.115 799 30 14 566 1347 487910013 487910795 0.000000e+00 1096.0
14 TraesCS1B01G471800 chr1D 78.008 723 86 41 621 1313 488545970 488545291 1.290000e-103 387.0
15 TraesCS1B01G471800 chr1D 79.113 541 59 36 803 1318 487948849 487949360 1.030000e-84 324.0
16 TraesCS1B01G471800 chr1D 82.667 225 22 8 348 562 487909668 487909885 1.820000e-42 183.0
17 TraesCS1B01G471800 chr6D 89.715 632 51 9 2348 2966 445904108 445904738 0.000000e+00 795.0
18 TraesCS1B01G471800 chr6D 79.498 239 41 5 1 233 25975435 25975199 2.370000e-36 163.0
19 TraesCS1B01G471800 chr4D 88.906 631 57 8 2348 2966 464232882 464233511 0.000000e+00 765.0
20 TraesCS1B01G471800 chr4D 88.571 630 58 7 2348 2966 485767376 485768002 0.000000e+00 752.0
21 TraesCS1B01G471800 chr2A 88.661 635 59 7 2347 2969 610055661 610055028 0.000000e+00 761.0
22 TraesCS1B01G471800 chr2A 77.532 316 45 19 1 309 739272743 739272447 1.830000e-37 167.0
23 TraesCS1B01G471800 chr3D 87.402 635 55 11 2348 2966 105696363 105696988 0.000000e+00 706.0
24 TraesCS1B01G471800 chr3D 82.692 104 18 0 141 244 584050325 584050428 3.150000e-15 93.5
25 TraesCS1B01G471800 chr3D 88.679 53 3 2 166 215 23767968 23767916 8.890000e-06 62.1
26 TraesCS1B01G471800 chr5D 85.602 507 56 11 2350 2845 444038894 444039394 1.580000e-142 516.0
27 TraesCS1B01G471800 chr5D 76.562 320 59 11 8 317 498288949 498289262 8.520000e-36 161.0
28 TraesCS1B01G471800 chrUn 76.944 733 89 44 621 1313 269772639 269771947 7.880000e-91 344.0
29 TraesCS1B01G471800 chrUn 76.944 733 89 44 621 1313 269781012 269780320 7.880000e-91 344.0
30 TraesCS1B01G471800 chr7B 81.534 352 44 14 986 1334 656419852 656420185 1.360000e-68 270.0
31 TraesCS1B01G471800 chr7B 81.493 335 41 14 986 1317 656286806 656287122 3.800000e-64 255.0
32 TraesCS1B01G471800 chr7A 78.119 489 52 36 858 1317 676360755 676360293 2.940000e-65 259.0
33 TraesCS1B01G471800 chr7D 78.899 436 48 25 887 1317 586029268 586029664 3.800000e-64 255.0
34 TraesCS1B01G471800 chr5A 81.048 248 41 4 73 315 523885109 523884863 3.020000e-45 193.0
35 TraesCS1B01G471800 chr5A 78.884 251 46 5 71 316 684314734 684314486 2.370000e-36 163.0
36 TraesCS1B01G471800 chr3B 77.116 319 68 3 1 315 738194836 738195153 2.350000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G471800 chr1B 679721858 679724826 2968 False 5483.00 5483 100.000000 1 2969 1 chr1B.!!$F2 2968
1 TraesCS1B01G471800 chr1B 679744791 679745301 510 False 348.00 348 79.777000 800 1318 1 chr1B.!!$F3 518
2 TraesCS1B01G471800 chr1A 586936827 586942789 5962 False 778.00 1869 86.434000 348 2347 3 chr1A.!!$F1 1999
3 TraesCS1B01G471800 chr1A 586949906 586950443 537 False 241.65 388 84.076000 813 1318 2 chr1A.!!$F2 505
4 TraesCS1B01G471800 chr1D 487909668 487911636 1968 False 813.00 1160 89.313667 348 2239 3 chr1D.!!$F2 1891
5 TraesCS1B01G471800 chr1D 488545291 488545970 679 True 387.00 387 78.008000 621 1313 1 chr1D.!!$R1 692
6 TraesCS1B01G471800 chr1D 487948849 487949360 511 False 324.00 324 79.113000 803 1318 1 chr1D.!!$F1 515
7 TraesCS1B01G471800 chr6D 445904108 445904738 630 False 795.00 795 89.715000 2348 2966 1 chr6D.!!$F1 618
8 TraesCS1B01G471800 chr4D 464232882 464233511 629 False 765.00 765 88.906000 2348 2966 1 chr4D.!!$F1 618
9 TraesCS1B01G471800 chr4D 485767376 485768002 626 False 752.00 752 88.571000 2348 2966 1 chr4D.!!$F2 618
10 TraesCS1B01G471800 chr2A 610055028 610055661 633 True 761.00 761 88.661000 2347 2969 1 chr2A.!!$R1 622
11 TraesCS1B01G471800 chr3D 105696363 105696988 625 False 706.00 706 87.402000 2348 2966 1 chr3D.!!$F1 618
12 TraesCS1B01G471800 chr5D 444038894 444039394 500 False 516.00 516 85.602000 2350 2845 1 chr5D.!!$F1 495
13 TraesCS1B01G471800 chrUn 269771947 269772639 692 True 344.00 344 76.944000 621 1313 1 chrUn.!!$R1 692
14 TraesCS1B01G471800 chrUn 269780320 269781012 692 True 344.00 344 76.944000 621 1313 1 chrUn.!!$R2 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.037160 GGTTTTCCCTGGTCGCCTTA 59.963 55.0 0.0 0.0 0.00 2.69 F
375 376 0.178947 ATTGGAAGGGGTTTTGCCGA 60.179 50.0 0.0 0.0 38.44 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1792 0.671781 TCTCTTCCTCTTGCTTGCGC 60.672 55.0 0.0 0.0 0.0 6.09 R
2365 6508 0.468585 TACCGATACATCCCGCCACT 60.469 55.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.778143 AACCATGACCTCGGCGCC 62.778 66.667 19.07 19.07 0.00 6.53
23 24 4.821589 GACCTCGGCGCCCTGAAG 62.822 72.222 23.46 13.14 0.00 3.02
25 26 4.521062 CCTCGGCGCCCTGAAGAG 62.521 72.222 23.46 20.34 0.00 2.85
30 31 4.400961 GCGCCCTGAAGAGCTGGT 62.401 66.667 0.00 0.00 34.00 4.00
31 32 3.019003 GCGCCCTGAAGAGCTGGTA 62.019 63.158 0.00 0.00 34.00 3.25
32 33 1.142748 CGCCCTGAAGAGCTGGTAG 59.857 63.158 0.00 0.00 34.00 3.18
33 34 1.524482 GCCCTGAAGAGCTGGTAGG 59.476 63.158 0.00 0.00 34.00 3.18
34 35 0.978146 GCCCTGAAGAGCTGGTAGGA 60.978 60.000 0.00 0.00 34.00 2.94
35 36 1.118838 CCCTGAAGAGCTGGTAGGAG 58.881 60.000 0.00 0.00 34.00 3.69
36 37 1.621072 CCCTGAAGAGCTGGTAGGAGT 60.621 57.143 0.00 0.00 34.00 3.85
37 38 1.754226 CCTGAAGAGCTGGTAGGAGTC 59.246 57.143 0.00 0.00 0.00 3.36
38 39 2.622977 CCTGAAGAGCTGGTAGGAGTCT 60.623 54.545 0.00 0.00 0.00 3.24
39 40 3.372133 CCTGAAGAGCTGGTAGGAGTCTA 60.372 52.174 0.00 0.00 0.00 2.59
40 41 3.622630 TGAAGAGCTGGTAGGAGTCTAC 58.377 50.000 0.00 0.00 43.82 2.59
41 42 2.335316 AGAGCTGGTAGGAGTCTACG 57.665 55.000 0.00 0.00 45.10 3.51
42 43 1.134037 AGAGCTGGTAGGAGTCTACGG 60.134 57.143 0.00 0.00 45.10 4.02
43 44 0.917533 AGCTGGTAGGAGTCTACGGA 59.082 55.000 0.00 0.00 45.10 4.69
44 45 1.134037 AGCTGGTAGGAGTCTACGGAG 60.134 57.143 0.00 0.00 45.10 4.63
45 46 1.970092 CTGGTAGGAGTCTACGGAGG 58.030 60.000 0.00 0.00 45.10 4.30
46 47 1.489649 CTGGTAGGAGTCTACGGAGGA 59.510 57.143 0.00 0.00 45.10 3.71
47 48 1.918262 TGGTAGGAGTCTACGGAGGAA 59.082 52.381 0.00 0.00 45.10 3.36
48 49 2.296792 GGTAGGAGTCTACGGAGGAAC 58.703 57.143 0.00 0.00 45.10 3.62
49 50 2.092484 GGTAGGAGTCTACGGAGGAACT 60.092 54.545 0.00 0.00 45.10 3.01
50 51 2.903375 AGGAGTCTACGGAGGAACTT 57.097 50.000 0.00 0.00 41.55 2.66
51 52 3.172471 AGGAGTCTACGGAGGAACTTT 57.828 47.619 0.00 0.00 41.55 2.66
52 53 3.508426 AGGAGTCTACGGAGGAACTTTT 58.492 45.455 0.00 0.00 41.55 2.27
53 54 3.902467 AGGAGTCTACGGAGGAACTTTTT 59.098 43.478 0.00 0.00 41.55 1.94
75 76 7.753309 TTTTTAATCCTTCTCAATGGACGAA 57.247 32.000 0.00 0.00 34.90 3.85
76 77 6.737254 TTTAATCCTTCTCAATGGACGAAC 57.263 37.500 0.00 0.00 34.90 3.95
77 78 4.559862 AATCCTTCTCAATGGACGAACT 57.440 40.909 0.00 0.00 34.90 3.01
78 79 4.559862 ATCCTTCTCAATGGACGAACTT 57.440 40.909 0.00 0.00 34.90 2.66
79 80 3.664107 TCCTTCTCAATGGACGAACTTG 58.336 45.455 0.00 0.00 0.00 3.16
80 81 3.323691 TCCTTCTCAATGGACGAACTTGA 59.676 43.478 0.00 0.00 0.00 3.02
81 82 3.681897 CCTTCTCAATGGACGAACTTGAG 59.318 47.826 12.35 12.35 44.59 3.02
82 83 3.319137 TCTCAATGGACGAACTTGAGG 57.681 47.619 15.98 4.66 43.81 3.86
83 84 2.897326 TCTCAATGGACGAACTTGAGGA 59.103 45.455 15.98 6.17 43.81 3.71
84 85 3.056536 TCTCAATGGACGAACTTGAGGAG 60.057 47.826 15.98 0.00 43.81 3.69
85 86 2.028112 TCAATGGACGAACTTGAGGAGG 60.028 50.000 0.00 0.00 0.00 4.30
86 87 1.938585 ATGGACGAACTTGAGGAGGA 58.061 50.000 0.00 0.00 0.00 3.71
87 88 1.712056 TGGACGAACTTGAGGAGGAA 58.288 50.000 0.00 0.00 0.00 3.36
88 89 2.043992 TGGACGAACTTGAGGAGGAAA 58.956 47.619 0.00 0.00 0.00 3.13
89 90 2.436542 TGGACGAACTTGAGGAGGAAAA 59.563 45.455 0.00 0.00 0.00 2.29
90 91 2.806818 GGACGAACTTGAGGAGGAAAAC 59.193 50.000 0.00 0.00 0.00 2.43
91 92 2.806818 GACGAACTTGAGGAGGAAAACC 59.193 50.000 0.00 0.00 0.00 3.27
92 93 2.152016 CGAACTTGAGGAGGAAAACCC 58.848 52.381 0.00 0.00 0.00 4.11
93 94 2.152016 GAACTTGAGGAGGAAAACCCG 58.848 52.381 0.00 0.00 40.87 5.28
94 95 1.430992 ACTTGAGGAGGAAAACCCGA 58.569 50.000 0.00 0.00 40.87 5.14
95 96 1.772453 ACTTGAGGAGGAAAACCCGAA 59.228 47.619 0.00 0.00 40.87 4.30
96 97 2.173996 ACTTGAGGAGGAAAACCCGAAA 59.826 45.455 0.00 0.00 40.87 3.46
97 98 2.561478 TGAGGAGGAAAACCCGAAAG 57.439 50.000 0.00 0.00 40.87 2.62
98 99 2.051692 TGAGGAGGAAAACCCGAAAGA 58.948 47.619 0.00 0.00 40.87 2.52
99 100 2.224450 TGAGGAGGAAAACCCGAAAGAC 60.224 50.000 0.00 0.00 40.87 3.01
100 101 2.038689 GAGGAGGAAAACCCGAAAGACT 59.961 50.000 0.00 0.00 40.87 3.24
101 102 2.152016 GGAGGAAAACCCGAAAGACTG 58.848 52.381 0.00 0.00 40.87 3.51
102 103 2.224450 GGAGGAAAACCCGAAAGACTGA 60.224 50.000 0.00 0.00 40.87 3.41
103 104 2.806818 GAGGAAAACCCGAAAGACTGAC 59.193 50.000 0.00 0.00 40.87 3.51
104 105 2.438392 AGGAAAACCCGAAAGACTGACT 59.562 45.455 0.00 0.00 40.87 3.41
105 106 3.118000 AGGAAAACCCGAAAGACTGACTT 60.118 43.478 0.00 0.00 40.87 3.01
106 107 4.102054 AGGAAAACCCGAAAGACTGACTTA 59.898 41.667 0.00 0.00 40.87 2.24
107 108 4.818005 GGAAAACCCGAAAGACTGACTTAA 59.182 41.667 0.00 0.00 37.93 1.85
108 109 5.297527 GGAAAACCCGAAAGACTGACTTAAA 59.702 40.000 0.00 0.00 37.93 1.52
109 110 6.373186 AAAACCCGAAAGACTGACTTAAAG 57.627 37.500 0.00 0.00 37.93 1.85
110 111 4.950205 ACCCGAAAGACTGACTTAAAGA 57.050 40.909 0.00 0.00 37.93 2.52
111 112 4.884247 ACCCGAAAGACTGACTTAAAGAG 58.116 43.478 0.00 0.00 37.93 2.85
112 113 4.587684 ACCCGAAAGACTGACTTAAAGAGA 59.412 41.667 0.00 0.00 37.93 3.10
113 114 5.070047 ACCCGAAAGACTGACTTAAAGAGAA 59.930 40.000 0.00 0.00 37.93 2.87
114 115 5.635700 CCCGAAAGACTGACTTAAAGAGAAG 59.364 44.000 0.00 0.00 37.93 2.85
115 116 5.119434 CCGAAAGACTGACTTAAAGAGAAGC 59.881 44.000 0.00 0.00 37.93 3.86
116 117 5.164138 CGAAAGACTGACTTAAAGAGAAGCG 60.164 44.000 0.00 0.00 37.93 4.68
117 118 3.580731 AGACTGACTTAAAGAGAAGCGC 58.419 45.455 0.00 0.00 0.00 5.92
118 119 2.668945 GACTGACTTAAAGAGAAGCGCC 59.331 50.000 2.29 0.00 0.00 6.53
119 120 2.037251 ACTGACTTAAAGAGAAGCGCCA 59.963 45.455 2.29 0.00 0.00 5.69
120 121 3.265791 CTGACTTAAAGAGAAGCGCCAT 58.734 45.455 2.29 0.00 0.00 4.40
121 122 3.262420 TGACTTAAAGAGAAGCGCCATC 58.738 45.455 2.29 2.55 0.00 3.51
122 123 3.262420 GACTTAAAGAGAAGCGCCATCA 58.738 45.455 2.29 0.00 0.00 3.07
123 124 3.873952 GACTTAAAGAGAAGCGCCATCAT 59.126 43.478 2.29 0.00 0.00 2.45
124 125 3.873952 ACTTAAAGAGAAGCGCCATCATC 59.126 43.478 2.29 3.21 0.00 2.92
125 126 1.673168 AAAGAGAAGCGCCATCATCC 58.327 50.000 2.29 0.00 0.00 3.51
126 127 0.531532 AAGAGAAGCGCCATCATCCG 60.532 55.000 2.29 0.00 0.00 4.18
127 128 1.227380 GAGAAGCGCCATCATCCGT 60.227 57.895 2.29 0.00 0.00 4.69
128 129 1.218230 GAGAAGCGCCATCATCCGTC 61.218 60.000 2.29 0.00 0.00 4.79
129 130 2.203070 AAGCGCCATCATCCGTCC 60.203 61.111 2.29 0.00 0.00 4.79
130 131 2.923426 GAAGCGCCATCATCCGTCCA 62.923 60.000 2.29 0.00 0.00 4.02
131 132 2.513666 GCGCCATCATCCGTCCAA 60.514 61.111 0.00 0.00 0.00 3.53
132 133 2.112198 GCGCCATCATCCGTCCAAA 61.112 57.895 0.00 0.00 0.00 3.28
133 134 1.721487 CGCCATCATCCGTCCAAAC 59.279 57.895 0.00 0.00 0.00 2.93
143 144 3.365265 GTCCAAACGCTGCCCCTG 61.365 66.667 0.00 0.00 0.00 4.45
151 152 4.496336 GCTGCCCCTGCGAGGATT 62.496 66.667 4.00 0.00 37.67 3.01
152 153 3.106986 GCTGCCCCTGCGAGGATTA 62.107 63.158 4.00 0.00 37.67 1.75
153 154 1.526887 CTGCCCCTGCGAGGATTAA 59.473 57.895 4.00 0.00 37.67 1.40
154 155 0.107214 CTGCCCCTGCGAGGATTAAA 60.107 55.000 4.00 0.00 37.67 1.52
155 156 0.329931 TGCCCCTGCGAGGATTAAAA 59.670 50.000 4.00 0.00 37.67 1.52
156 157 0.738975 GCCCCTGCGAGGATTAAAAC 59.261 55.000 4.00 0.00 37.67 2.43
157 158 1.389555 CCCCTGCGAGGATTAAAACC 58.610 55.000 4.00 0.00 37.67 3.27
158 159 1.389555 CCCTGCGAGGATTAAAACCC 58.610 55.000 4.00 0.00 37.67 4.11
159 160 1.064685 CCCTGCGAGGATTAAAACCCT 60.065 52.381 4.00 0.00 37.67 4.34
160 161 2.171870 CCCTGCGAGGATTAAAACCCTA 59.828 50.000 4.00 0.00 37.67 3.53
161 162 3.371166 CCCTGCGAGGATTAAAACCCTAA 60.371 47.826 4.00 0.00 37.67 2.69
162 163 3.626217 CCTGCGAGGATTAAAACCCTAAC 59.374 47.826 0.00 0.00 37.67 2.34
163 164 3.613030 TGCGAGGATTAAAACCCTAACC 58.387 45.455 0.00 0.00 31.84 2.85
164 165 3.009253 TGCGAGGATTAAAACCCTAACCA 59.991 43.478 0.00 0.00 31.84 3.67
165 166 4.204799 GCGAGGATTAAAACCCTAACCAT 58.795 43.478 0.00 0.00 31.84 3.55
166 167 4.275196 GCGAGGATTAAAACCCTAACCATC 59.725 45.833 0.00 0.00 31.84 3.51
167 168 5.681639 CGAGGATTAAAACCCTAACCATCT 58.318 41.667 0.00 0.00 31.84 2.90
168 169 6.687139 GCGAGGATTAAAACCCTAACCATCTA 60.687 42.308 0.00 0.00 31.84 1.98
169 170 6.704937 CGAGGATTAAAACCCTAACCATCTAC 59.295 42.308 0.00 0.00 31.84 2.59
170 171 7.418712 CGAGGATTAAAACCCTAACCATCTACT 60.419 40.741 0.00 0.00 31.84 2.57
171 172 8.865244 AGGATTAAAACCCTAACCATCTACTA 57.135 34.615 0.00 0.00 0.00 1.82
172 173 8.935741 AGGATTAAAACCCTAACCATCTACTAG 58.064 37.037 0.00 0.00 0.00 2.57
173 174 7.660617 GGATTAAAACCCTAACCATCTACTAGC 59.339 40.741 0.00 0.00 0.00 3.42
174 175 5.369409 AAAACCCTAACCATCTACTAGCC 57.631 43.478 0.00 0.00 0.00 3.93
175 176 2.595238 ACCCTAACCATCTACTAGCCG 58.405 52.381 0.00 0.00 0.00 5.52
176 177 1.893801 CCCTAACCATCTACTAGCCGG 59.106 57.143 0.00 0.00 0.00 6.13
177 178 2.490351 CCCTAACCATCTACTAGCCGGA 60.490 54.545 5.05 0.00 0.00 5.14
178 179 2.820787 CCTAACCATCTACTAGCCGGAG 59.179 54.545 5.05 0.00 0.00 4.63
179 180 1.041437 AACCATCTACTAGCCGGAGC 58.959 55.000 5.05 0.00 40.32 4.70
180 181 0.828343 ACCATCTACTAGCCGGAGCC 60.828 60.000 5.05 0.00 41.25 4.70
181 182 1.581954 CATCTACTAGCCGGAGCCG 59.418 63.158 5.05 1.06 41.25 5.52
182 183 0.889638 CATCTACTAGCCGGAGCCGA 60.890 60.000 5.05 0.00 42.83 5.54
183 184 0.606944 ATCTACTAGCCGGAGCCGAG 60.607 60.000 5.05 2.46 42.83 4.63
184 185 2.203308 TACTAGCCGGAGCCGAGG 60.203 66.667 5.05 0.00 42.83 4.63
193 194 2.347490 GAGCCGAGGCACCAGAAA 59.653 61.111 17.18 0.00 44.88 2.52
194 195 1.078143 GAGCCGAGGCACCAGAAAT 60.078 57.895 17.18 0.00 44.88 2.17
195 196 1.078143 AGCCGAGGCACCAGAAATC 60.078 57.895 17.18 0.00 44.88 2.17
196 197 2.115291 GCCGAGGCACCAGAAATCC 61.115 63.158 9.58 0.00 41.49 3.01
197 198 1.452108 CCGAGGCACCAGAAATCCC 60.452 63.158 0.00 0.00 0.00 3.85
198 199 1.452108 CGAGGCACCAGAAATCCCC 60.452 63.158 0.00 0.00 0.00 4.81
199 200 1.915078 CGAGGCACCAGAAATCCCCT 61.915 60.000 0.00 0.00 0.00 4.79
200 201 0.106967 GAGGCACCAGAAATCCCCTC 60.107 60.000 0.00 0.00 32.93 4.30
201 202 1.076705 GGCACCAGAAATCCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
202 203 1.076705 GCACCAGAAATCCCCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
203 204 1.615262 CACCAGAAATCCCCTCCCC 59.385 63.158 0.00 0.00 0.00 4.81
204 205 1.622752 ACCAGAAATCCCCTCCCCC 60.623 63.158 0.00 0.00 0.00 5.40
233 234 3.062466 CGGAGTGGCAGACGGAGA 61.062 66.667 0.00 0.00 0.00 3.71
234 235 2.888863 GGAGTGGCAGACGGAGAG 59.111 66.667 0.00 0.00 0.00 3.20
235 236 2.716017 GGAGTGGCAGACGGAGAGG 61.716 68.421 0.00 0.00 0.00 3.69
236 237 1.679305 GAGTGGCAGACGGAGAGGA 60.679 63.158 0.00 0.00 0.00 3.71
237 238 1.662438 GAGTGGCAGACGGAGAGGAG 61.662 65.000 0.00 0.00 0.00 3.69
238 239 2.363018 TGGCAGACGGAGAGGAGG 60.363 66.667 0.00 0.00 0.00 4.30
239 240 3.844090 GGCAGACGGAGAGGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
240 241 4.200283 GCAGACGGAGAGGAGGCG 62.200 72.222 0.00 0.00 0.00 5.52
241 242 2.438614 CAGACGGAGAGGAGGCGA 60.439 66.667 0.00 0.00 0.00 5.54
242 243 2.046864 CAGACGGAGAGGAGGCGAA 61.047 63.158 0.00 0.00 0.00 4.70
243 244 1.076632 AGACGGAGAGGAGGCGAAT 60.077 57.895 0.00 0.00 0.00 3.34
244 245 0.684805 AGACGGAGAGGAGGCGAATT 60.685 55.000 0.00 0.00 0.00 2.17
245 246 0.249114 GACGGAGAGGAGGCGAATTC 60.249 60.000 0.00 0.00 0.00 2.17
246 247 0.970937 ACGGAGAGGAGGCGAATTCA 60.971 55.000 6.22 0.00 0.00 2.57
247 248 0.528684 CGGAGAGGAGGCGAATTCAC 60.529 60.000 6.22 0.00 0.00 3.18
248 249 0.537188 GGAGAGGAGGCGAATTCACA 59.463 55.000 6.22 0.00 0.00 3.58
249 250 1.472376 GGAGAGGAGGCGAATTCACAG 60.472 57.143 6.22 0.00 0.00 3.66
250 251 1.478510 GAGAGGAGGCGAATTCACAGA 59.521 52.381 6.22 0.00 0.00 3.41
251 252 1.480137 AGAGGAGGCGAATTCACAGAG 59.520 52.381 6.22 0.00 0.00 3.35
252 253 1.205893 GAGGAGGCGAATTCACAGAGT 59.794 52.381 6.22 0.00 0.00 3.24
253 254 1.625818 AGGAGGCGAATTCACAGAGTT 59.374 47.619 6.22 0.00 0.00 3.01
254 255 1.734465 GGAGGCGAATTCACAGAGTTG 59.266 52.381 6.22 0.00 0.00 3.16
255 256 1.129437 GAGGCGAATTCACAGAGTTGC 59.871 52.381 6.22 0.00 0.00 4.17
256 257 0.169009 GGCGAATTCACAGAGTTGCC 59.831 55.000 6.22 3.69 0.00 4.52
257 258 0.179215 GCGAATTCACAGAGTTGCCG 60.179 55.000 6.22 0.00 0.00 5.69
258 259 0.443869 CGAATTCACAGAGTTGCCGG 59.556 55.000 6.22 0.00 0.00 6.13
259 260 0.169009 GAATTCACAGAGTTGCCGGC 59.831 55.000 22.73 22.73 0.00 6.13
260 261 1.577328 AATTCACAGAGTTGCCGGCG 61.577 55.000 23.90 8.78 0.00 6.46
261 262 4.680237 TCACAGAGTTGCCGGCGG 62.680 66.667 24.35 24.35 0.00 6.13
262 263 4.680237 CACAGAGTTGCCGGCGGA 62.680 66.667 33.44 12.50 0.00 5.54
263 264 4.379243 ACAGAGTTGCCGGCGGAG 62.379 66.667 33.44 11.56 0.00 4.63
264 265 4.069232 CAGAGTTGCCGGCGGAGA 62.069 66.667 33.44 14.55 0.00 3.71
265 266 3.077556 AGAGTTGCCGGCGGAGAT 61.078 61.111 33.44 12.03 0.00 2.75
266 267 2.586357 GAGTTGCCGGCGGAGATC 60.586 66.667 33.44 17.20 0.00 2.75
267 268 3.371097 GAGTTGCCGGCGGAGATCA 62.371 63.158 33.44 15.76 0.00 2.92
268 269 2.435938 GTTGCCGGCGGAGATCAA 60.436 61.111 33.44 21.17 0.00 2.57
269 270 2.125147 TTGCCGGCGGAGATCAAG 60.125 61.111 33.44 0.00 0.00 3.02
270 271 3.680620 TTGCCGGCGGAGATCAAGG 62.681 63.158 33.44 0.00 0.00 3.61
271 272 3.849951 GCCGGCGGAGATCAAGGA 61.850 66.667 33.44 0.00 0.00 3.36
272 273 2.419198 CCGGCGGAGATCAAGGAG 59.581 66.667 24.41 0.00 0.00 3.69
273 274 2.127869 CCGGCGGAGATCAAGGAGA 61.128 63.158 24.41 0.00 0.00 3.71
274 275 1.361993 CGGCGGAGATCAAGGAGAG 59.638 63.158 0.00 0.00 0.00 3.20
275 276 1.745264 GGCGGAGATCAAGGAGAGG 59.255 63.158 0.00 0.00 0.00 3.69
276 277 0.757188 GGCGGAGATCAAGGAGAGGA 60.757 60.000 0.00 0.00 0.00 3.71
277 278 1.115467 GCGGAGATCAAGGAGAGGAA 58.885 55.000 0.00 0.00 0.00 3.36
278 279 1.068434 GCGGAGATCAAGGAGAGGAAG 59.932 57.143 0.00 0.00 0.00 3.46
279 280 1.686052 CGGAGATCAAGGAGAGGAAGG 59.314 57.143 0.00 0.00 0.00 3.46
280 281 2.758130 GGAGATCAAGGAGAGGAAGGT 58.242 52.381 0.00 0.00 0.00 3.50
281 282 3.111484 GGAGATCAAGGAGAGGAAGGTT 58.889 50.000 0.00 0.00 0.00 3.50
282 283 3.521531 GGAGATCAAGGAGAGGAAGGTTT 59.478 47.826 0.00 0.00 0.00 3.27
283 284 4.018870 GGAGATCAAGGAGAGGAAGGTTTT 60.019 45.833 0.00 0.00 0.00 2.43
284 285 5.172687 AGATCAAGGAGAGGAAGGTTTTC 57.827 43.478 0.00 0.00 0.00 2.29
292 293 2.942641 GGAAGGTTTTCCCTGGTCG 58.057 57.895 0.00 0.00 45.47 4.79
293 294 1.241990 GGAAGGTTTTCCCTGGTCGC 61.242 60.000 0.00 0.00 45.47 5.19
294 295 1.228459 AAGGTTTTCCCTGGTCGCC 60.228 57.895 0.00 0.00 45.47 5.54
295 296 1.716028 AAGGTTTTCCCTGGTCGCCT 61.716 55.000 0.00 0.00 45.47 5.52
296 297 1.228459 GGTTTTCCCTGGTCGCCTT 60.228 57.895 0.00 0.00 0.00 4.35
297 298 0.037160 GGTTTTCCCTGGTCGCCTTA 59.963 55.000 0.00 0.00 0.00 2.69
298 299 1.162698 GTTTTCCCTGGTCGCCTTAC 58.837 55.000 0.00 0.00 0.00 2.34
299 300 0.320946 TTTTCCCTGGTCGCCTTACG 60.321 55.000 0.00 0.00 45.62 3.18
310 311 1.823976 GCCTTACGAGAGGGGAAGG 59.176 63.158 10.11 0.00 40.48 3.46
311 312 0.686769 GCCTTACGAGAGGGGAAGGA 60.687 60.000 7.74 0.00 40.15 3.36
312 313 1.861982 CCTTACGAGAGGGGAAGGAA 58.138 55.000 0.00 0.00 40.15 3.36
313 314 2.185387 CCTTACGAGAGGGGAAGGAAA 58.815 52.381 0.00 0.00 40.15 3.13
314 315 2.570302 CCTTACGAGAGGGGAAGGAAAA 59.430 50.000 0.00 0.00 40.15 2.29
315 316 3.369576 CCTTACGAGAGGGGAAGGAAAAG 60.370 52.174 0.00 0.00 40.15 2.27
316 317 2.025636 ACGAGAGGGGAAGGAAAAGA 57.974 50.000 0.00 0.00 0.00 2.52
317 318 1.624312 ACGAGAGGGGAAGGAAAAGAC 59.376 52.381 0.00 0.00 0.00 3.01
318 319 1.903183 CGAGAGGGGAAGGAAAAGACT 59.097 52.381 0.00 0.00 0.00 3.24
319 320 2.354203 CGAGAGGGGAAGGAAAAGACTG 60.354 54.545 0.00 0.00 0.00 3.51
320 321 2.640332 GAGAGGGGAAGGAAAAGACTGT 59.360 50.000 0.00 0.00 0.00 3.55
321 322 3.056832 AGAGGGGAAGGAAAAGACTGTT 58.943 45.455 0.00 0.00 0.00 3.16
322 323 3.149981 GAGGGGAAGGAAAAGACTGTTG 58.850 50.000 0.00 0.00 0.00 3.33
323 324 2.783510 AGGGGAAGGAAAAGACTGTTGA 59.216 45.455 0.00 0.00 0.00 3.18
324 325 3.399305 AGGGGAAGGAAAAGACTGTTGAT 59.601 43.478 0.00 0.00 0.00 2.57
325 326 3.759086 GGGGAAGGAAAAGACTGTTGATC 59.241 47.826 0.00 0.00 0.00 2.92
326 327 3.437049 GGGAAGGAAAAGACTGTTGATCG 59.563 47.826 0.00 0.00 0.00 3.69
327 328 4.315803 GGAAGGAAAAGACTGTTGATCGA 58.684 43.478 0.00 0.00 0.00 3.59
328 329 4.390297 GGAAGGAAAAGACTGTTGATCGAG 59.610 45.833 0.00 0.00 0.00 4.04
329 330 4.873746 AGGAAAAGACTGTTGATCGAGA 57.126 40.909 0.00 0.00 0.00 4.04
330 331 4.815269 AGGAAAAGACTGTTGATCGAGAG 58.185 43.478 5.56 5.56 0.00 3.20
331 332 3.929610 GGAAAAGACTGTTGATCGAGAGG 59.070 47.826 11.62 0.00 0.00 3.69
332 333 4.322049 GGAAAAGACTGTTGATCGAGAGGA 60.322 45.833 11.62 0.00 0.00 3.71
333 334 4.448537 AAAGACTGTTGATCGAGAGGAG 57.551 45.455 11.62 0.00 0.00 3.69
334 335 2.374184 AGACTGTTGATCGAGAGGAGG 58.626 52.381 11.62 0.00 0.00 4.30
335 336 2.025793 AGACTGTTGATCGAGAGGAGGA 60.026 50.000 11.62 0.00 0.00 3.71
336 337 2.755655 GACTGTTGATCGAGAGGAGGAA 59.244 50.000 11.62 0.00 0.00 3.36
337 338 3.165875 ACTGTTGATCGAGAGGAGGAAA 58.834 45.455 11.62 0.00 0.00 3.13
338 339 3.194542 ACTGTTGATCGAGAGGAGGAAAG 59.805 47.826 11.62 0.00 0.00 2.62
339 340 2.093973 TGTTGATCGAGAGGAGGAAAGC 60.094 50.000 0.00 0.00 0.00 3.51
340 341 2.151502 TGATCGAGAGGAGGAAAGCT 57.848 50.000 0.00 0.00 0.00 3.74
341 342 2.028130 TGATCGAGAGGAGGAAAGCTC 58.972 52.381 0.00 0.00 0.00 4.09
342 343 2.306847 GATCGAGAGGAGGAAAGCTCT 58.693 52.381 0.00 0.00 0.00 4.09
343 344 1.757682 TCGAGAGGAGGAAAGCTCTC 58.242 55.000 0.00 0.00 39.00 3.20
344 345 1.004862 TCGAGAGGAGGAAAGCTCTCA 59.995 52.381 1.61 0.00 41.55 3.27
345 346 1.405105 CGAGAGGAGGAAAGCTCTCAG 59.595 57.143 1.61 0.00 41.55 3.35
346 347 2.456577 GAGAGGAGGAAAGCTCTCAGT 58.543 52.381 0.00 0.00 41.24 3.41
374 375 0.246360 GATTGGAAGGGGTTTTGCCG 59.754 55.000 0.00 0.00 38.44 5.69
375 376 0.178947 ATTGGAAGGGGTTTTGCCGA 60.179 50.000 0.00 0.00 38.44 5.54
376 377 0.825840 TTGGAAGGGGTTTTGCCGAG 60.826 55.000 0.00 0.00 38.44 4.63
377 378 1.228459 GGAAGGGGTTTTGCCGAGT 60.228 57.895 0.00 0.00 38.44 4.18
378 379 1.524008 GGAAGGGGTTTTGCCGAGTG 61.524 60.000 0.00 0.00 38.44 3.51
379 380 0.822121 GAAGGGGTTTTGCCGAGTGT 60.822 55.000 0.00 0.00 38.44 3.55
380 381 1.106944 AAGGGGTTTTGCCGAGTGTG 61.107 55.000 0.00 0.00 38.44 3.82
381 382 1.527380 GGGGTTTTGCCGAGTGTGA 60.527 57.895 0.00 0.00 38.44 3.58
382 383 1.652563 GGGTTTTGCCGAGTGTGAC 59.347 57.895 0.00 0.00 38.44 3.67
383 384 1.098712 GGGTTTTGCCGAGTGTGACA 61.099 55.000 0.00 0.00 38.44 3.58
386 387 1.873591 GTTTTGCCGAGTGTGACATCT 59.126 47.619 0.00 0.00 0.00 2.90
387 388 2.254546 TTTGCCGAGTGTGACATCTT 57.745 45.000 0.00 0.00 0.00 2.40
388 389 1.795768 TTGCCGAGTGTGACATCTTC 58.204 50.000 0.00 0.00 0.00 2.87
389 390 0.969149 TGCCGAGTGTGACATCTTCT 59.031 50.000 0.00 0.00 0.00 2.85
390 391 1.067565 TGCCGAGTGTGACATCTTCTC 60.068 52.381 0.00 0.00 0.00 2.87
394 395 4.605968 CCGAGTGTGACATCTTCTCTATG 58.394 47.826 0.00 0.00 0.00 2.23
403 404 8.053355 TGTGACATCTTCTCTATGTAGGTAGAA 58.947 37.037 0.00 0.00 37.69 2.10
413 414 9.798994 TCTCTATGTAGGTAGAAAAATCGAAAC 57.201 33.333 0.00 0.00 30.74 2.78
414 415 9.582431 CTCTATGTAGGTAGAAAAATCGAAACA 57.418 33.333 0.00 0.00 30.74 2.83
420 421 9.378597 GTAGGTAGAAAAATCGAAACAGTTTTC 57.621 33.333 0.00 1.65 39.28 2.29
440 441 9.573133 AGTTTTCGCATTTTTCCATAAGAATAG 57.427 29.630 0.00 0.00 33.44 1.73
445 446 8.735315 TCGCATTTTTCCATAAGAATAGAAACA 58.265 29.630 0.00 0.00 33.44 2.83
446 447 9.013490 CGCATTTTTCCATAAGAATAGAAACAG 57.987 33.333 0.00 0.00 33.44 3.16
457 458 6.163135 AGAATAGAAACAGATTACTCCGGG 57.837 41.667 0.00 0.00 0.00 5.73
458 459 5.897824 AGAATAGAAACAGATTACTCCGGGA 59.102 40.000 0.00 0.00 0.00 5.14
462 463 6.555463 AGAAACAGATTACTCCGGGATTTA 57.445 37.500 0.00 0.00 0.00 1.40
463 464 6.954232 AGAAACAGATTACTCCGGGATTTAA 58.046 36.000 0.00 0.00 0.00 1.52
467 468 7.803279 ACAGATTACTCCGGGATTTAAATTC 57.197 36.000 0.00 0.00 0.00 2.17
471 472 9.475620 AGATTACTCCGGGATTTAAATTCTTTT 57.524 29.630 0.00 0.00 0.00 2.27
522 530 3.508793 CCAAGTGAAAGAATGCACATCCT 59.491 43.478 0.00 0.00 37.48 3.24
532 540 1.608055 TGCACATCCTGAAGTTGTGG 58.392 50.000 10.74 0.00 40.79 4.17
572 704 8.792830 AGTTACATATACTTGAAGTGCACAAT 57.207 30.769 21.04 7.32 0.00 2.71
604 741 4.862902 TCTTCACATCCATAGCTAGCTC 57.137 45.455 23.26 0.00 0.00 4.09
640 777 4.592942 TCCATTCTTTCTTCACCTCCATG 58.407 43.478 0.00 0.00 0.00 3.66
641 778 3.129988 CCATTCTTTCTTCACCTCCATGC 59.870 47.826 0.00 0.00 0.00 4.06
642 779 3.507162 TTCTTTCTTCACCTCCATGCA 57.493 42.857 0.00 0.00 0.00 3.96
643 780 3.726557 TCTTTCTTCACCTCCATGCAT 57.273 42.857 0.00 0.00 0.00 3.96
682 823 2.246327 TGGAAATCCATTTACCCTCCCC 59.754 50.000 0.00 0.00 42.01 4.81
762 916 3.997021 GCAAGCTAAGCTACACTTCTTCA 59.003 43.478 3.96 0.00 38.25 3.02
808 982 1.620822 GCCGGCTTAATTCCATCCAT 58.379 50.000 22.15 0.00 0.00 3.41
837 1015 1.433199 TCCTTCCACCTCTCTCCTCAA 59.567 52.381 0.00 0.00 0.00 3.02
947 1164 3.156293 CCATCTCACCTCTCGATCATCT 58.844 50.000 0.00 0.00 0.00 2.90
948 1165 4.331108 CCATCTCACCTCTCGATCATCTA 58.669 47.826 0.00 0.00 0.00 1.98
949 1166 4.764308 CCATCTCACCTCTCGATCATCTAA 59.236 45.833 0.00 0.00 0.00 2.10
950 1167 5.418524 CCATCTCACCTCTCGATCATCTAAT 59.581 44.000 0.00 0.00 0.00 1.73
953 1170 5.471797 TCTCACCTCTCGATCATCTAATCAC 59.528 44.000 0.00 0.00 0.00 3.06
956 1173 4.279671 ACCTCTCGATCATCTAATCACCAC 59.720 45.833 0.00 0.00 0.00 4.16
957 1174 4.321601 CCTCTCGATCATCTAATCACCACC 60.322 50.000 0.00 0.00 0.00 4.61
962 1179 4.683129 CGATCATCTAATCACCACCACCAA 60.683 45.833 0.00 0.00 0.00 3.67
967 1184 0.827507 AATCACCACCACCAAGGCAC 60.828 55.000 0.00 0.00 43.14 5.01
968 1185 2.713531 ATCACCACCACCAAGGCACC 62.714 60.000 0.00 0.00 43.14 5.01
977 1227 1.826054 CCAAGGCACCAACCAACGA 60.826 57.895 0.00 0.00 0.00 3.85
978 1228 1.358759 CAAGGCACCAACCAACGAC 59.641 57.895 0.00 0.00 0.00 4.34
980 1230 1.101049 AAGGCACCAACCAACGACAG 61.101 55.000 0.00 0.00 0.00 3.51
981 1231 1.525077 GGCACCAACCAACGACAGA 60.525 57.895 0.00 0.00 0.00 3.41
982 1232 1.507141 GGCACCAACCAACGACAGAG 61.507 60.000 0.00 0.00 0.00 3.35
993 1243 1.241990 ACGACAGAGCTTGCCTACGA 61.242 55.000 0.00 0.00 0.00 3.43
995 1245 1.846541 GACAGAGCTTGCCTACGATC 58.153 55.000 0.00 0.00 0.00 3.69
1248 1516 2.196997 TATTCCAGCTGCCCGCAACT 62.197 55.000 8.66 0.00 42.61 3.16
1371 1645 4.907034 CCGCCGACGTCCATCGAG 62.907 72.222 10.58 0.00 45.13 4.04
1390 1664 1.745264 GAGATCAGGAGGAAGCCCG 59.255 63.158 0.00 0.00 37.58 6.13
1400 1674 4.083862 GAAGCCCGCGAAGGAGGT 62.084 66.667 8.23 0.00 45.00 3.85
1411 1685 3.868200 AAGGAGGTTGCCAAGCCGG 62.868 63.158 2.45 0.00 38.11 6.13
1518 1792 1.301293 GGAAGAGGAGGCCAACAGG 59.699 63.158 5.01 0.00 0.00 4.00
1551 1825 0.767375 AAGAGAAGAAGCCAGCACCA 59.233 50.000 0.00 0.00 0.00 4.17
1575 1849 0.107831 CGAAGAAGGACCAACACCCA 59.892 55.000 0.00 0.00 0.00 4.51
1578 1852 1.518367 AGAAGGACCAACACCCAAGA 58.482 50.000 0.00 0.00 0.00 3.02
1635 1909 2.217038 ACCCGAGAAGCAAGAGCCA 61.217 57.895 0.00 0.00 43.56 4.75
1642 1916 0.679002 GAAGCAAGAGCCAGCCATCA 60.679 55.000 0.00 0.00 43.56 3.07
1688 1962 1.613630 GGGAGAGCCTGGAGGACAA 60.614 63.158 0.00 0.00 37.39 3.18
1872 2146 2.590575 AAGTGGGCGGACAACACG 60.591 61.111 0.00 0.00 39.95 4.49
1881 2155 0.790207 CGGACAACACGTTGGAGATG 59.210 55.000 14.07 0.00 44.45 2.90
1886 2160 0.250124 AACACGTTGGAGATGGCGAA 60.250 50.000 0.00 0.00 0.00 4.70
1902 2176 2.028385 GGCGAAGAAGAACAAGGAGGTA 60.028 50.000 0.00 0.00 0.00 3.08
1947 2221 1.509004 GCTCGGCTTCTTCGTCTCT 59.491 57.895 0.00 0.00 0.00 3.10
1978 2255 1.275010 TCGGTAAGTGAGCAGCAATGA 59.725 47.619 0.00 0.00 0.00 2.57
2002 2279 2.238144 ACCAAGGATGACCATCTCACAG 59.762 50.000 9.56 0.00 37.92 3.66
2003 2280 2.421107 CCAAGGATGACCATCTCACAGG 60.421 54.545 9.56 2.75 37.92 4.00
2005 2282 0.179034 GGATGACCATCTCACAGGCC 60.179 60.000 9.56 0.00 37.92 5.19
2006 2283 0.543277 GATGACCATCTCACAGGCCA 59.457 55.000 5.01 0.00 35.04 5.36
2010 2287 0.037303 ACCATCTCACAGGCCAACAG 59.963 55.000 5.01 0.00 0.00 3.16
2012 2289 1.376424 ATCTCACAGGCCAACAGCG 60.376 57.895 5.01 0.00 45.17 5.18
2013 2290 2.809861 ATCTCACAGGCCAACAGCGG 62.810 60.000 5.01 0.00 45.17 5.52
2014 2291 4.641645 TCACAGGCCAACAGCGGG 62.642 66.667 5.01 0.00 45.17 6.13
2241 6384 1.885163 AACATCCGTCCGTCCCTCAC 61.885 60.000 0.00 0.00 0.00 3.51
2242 6385 2.758737 ATCCGTCCGTCCCTCACC 60.759 66.667 0.00 0.00 0.00 4.02
2243 6386 3.298300 ATCCGTCCGTCCCTCACCT 62.298 63.158 0.00 0.00 0.00 4.00
2244 6387 3.450115 CCGTCCGTCCCTCACCTC 61.450 72.222 0.00 0.00 0.00 3.85
2245 6388 2.361357 CGTCCGTCCCTCACCTCT 60.361 66.667 0.00 0.00 0.00 3.69
2246 6389 1.077930 CGTCCGTCCCTCACCTCTA 60.078 63.158 0.00 0.00 0.00 2.43
2247 6390 1.096386 CGTCCGTCCCTCACCTCTAG 61.096 65.000 0.00 0.00 0.00 2.43
2248 6391 0.034283 GTCCGTCCCTCACCTCTAGT 60.034 60.000 0.00 0.00 0.00 2.57
2283 6426 0.179702 AGCATCGCCACAGTCATCAT 59.820 50.000 0.00 0.00 0.00 2.45
2302 6445 3.507622 TCATGTCTCCGCTATTCATCGAT 59.492 43.478 0.00 0.00 0.00 3.59
2303 6446 4.021981 TCATGTCTCCGCTATTCATCGATT 60.022 41.667 0.00 0.00 0.00 3.34
2320 6463 2.489329 CGATTGTTCTTGACCCTGCAAT 59.511 45.455 0.00 0.00 0.00 3.56
2321 6464 3.689161 CGATTGTTCTTGACCCTGCAATA 59.311 43.478 0.00 0.00 0.00 1.90
2322 6465 4.336433 CGATTGTTCTTGACCCTGCAATAT 59.664 41.667 0.00 0.00 0.00 1.28
2362 6505 7.334921 TGTGGTCCCTACGAATAAGTAAATTTG 59.665 37.037 0.00 0.00 0.00 2.32
2365 6508 6.316890 GTCCCTACGAATAAGTAAATTTGCCA 59.683 38.462 0.00 0.00 0.00 4.92
2384 6527 0.468585 AGTGGCGGGATGTATCGGTA 60.469 55.000 0.00 0.00 0.00 4.02
2388 6531 1.211969 CGGGATGTATCGGTAGGCG 59.788 63.158 0.00 0.00 0.00 5.52
2420 6563 2.099141 TCAGTTTCCTCAAGATGCGG 57.901 50.000 0.00 0.00 0.00 5.69
2432 6576 1.557099 AGATGCGGGTTGTCTGACTA 58.443 50.000 9.51 0.00 0.00 2.59
2492 6637 8.426489 ACTTGGTTAATACAACTGACAAGACTA 58.574 33.333 0.00 0.00 37.92 2.59
2495 6640 7.383029 TGGTTAATACAACTGACAAGACTAACG 59.617 37.037 0.00 0.00 0.00 3.18
2496 6641 7.383300 GGTTAATACAACTGACAAGACTAACGT 59.617 37.037 0.00 0.00 0.00 3.99
2498 6643 7.781548 AATACAACTGACAAGACTAACGTTT 57.218 32.000 5.91 0.00 0.00 3.60
2501 6646 5.291128 ACAACTGACAAGACTAACGTTTCAG 59.709 40.000 17.90 17.90 36.02 3.02
2509 6666 7.927048 ACAAGACTAACGTTTCAGCTTTTTAT 58.073 30.769 5.91 0.00 0.00 1.40
2583 6740 5.039920 TCTTTCCATACATCTCACATGGG 57.960 43.478 0.00 0.00 39.79 4.00
2910 7080 8.911247 ATAATTCAAGTCGTTCCAAAATAAGC 57.089 30.769 0.00 0.00 0.00 3.09
2917 7087 6.744112 AGTCGTTCCAAAATAAGCATTTCAA 58.256 32.000 0.00 0.00 33.09 2.69
2920 7090 8.495148 GTCGTTCCAAAATAAGCATTTCAAAAT 58.505 29.630 0.00 0.00 33.09 1.82
2940 7110 9.850628 TCAAAATTTTGAAAAATCACATTGCAA 57.149 22.222 27.22 0.00 43.62 4.08
2966 7136 9.796120 ACGATTTGAAAAACTAATTTCACTCAA 57.204 25.926 2.20 0.00 46.06 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.778143 GGCGCCGAGGTCATGGTT 62.778 66.667 12.58 0.00 0.00 3.67
6 7 4.821589 CTTCAGGGCGCCGAGGTC 62.822 72.222 22.54 5.83 0.00 3.85
8 9 4.521062 CTCTTCAGGGCGCCGAGG 62.521 72.222 22.54 13.80 0.00 4.63
13 14 2.914777 CTACCAGCTCTTCAGGGCGC 62.915 65.000 0.00 0.00 0.00 6.53
14 15 1.142748 CTACCAGCTCTTCAGGGCG 59.857 63.158 0.00 0.00 0.00 6.13
15 16 0.978146 TCCTACCAGCTCTTCAGGGC 60.978 60.000 0.00 0.00 0.00 5.19
16 17 1.118838 CTCCTACCAGCTCTTCAGGG 58.881 60.000 0.00 0.00 0.00 4.45
17 18 1.754226 GACTCCTACCAGCTCTTCAGG 59.246 57.143 0.00 0.00 0.00 3.86
18 19 2.733956 AGACTCCTACCAGCTCTTCAG 58.266 52.381 0.00 0.00 0.00 3.02
19 20 2.909504 AGACTCCTACCAGCTCTTCA 57.090 50.000 0.00 0.00 0.00 3.02
20 21 2.614983 CGTAGACTCCTACCAGCTCTTC 59.385 54.545 0.00 0.00 41.68 2.87
21 22 2.645802 CGTAGACTCCTACCAGCTCTT 58.354 52.381 0.00 0.00 41.68 2.85
22 23 1.134037 CCGTAGACTCCTACCAGCTCT 60.134 57.143 0.00 0.00 41.68 4.09
23 24 1.134159 TCCGTAGACTCCTACCAGCTC 60.134 57.143 0.00 0.00 41.68 4.09
24 25 0.917533 TCCGTAGACTCCTACCAGCT 59.082 55.000 0.00 0.00 41.68 4.24
25 26 1.310904 CTCCGTAGACTCCTACCAGC 58.689 60.000 0.00 0.00 41.68 4.85
26 27 1.489649 TCCTCCGTAGACTCCTACCAG 59.510 57.143 0.00 0.00 41.68 4.00
27 28 1.588239 TCCTCCGTAGACTCCTACCA 58.412 55.000 0.00 0.00 41.68 3.25
28 29 2.092484 AGTTCCTCCGTAGACTCCTACC 60.092 54.545 0.00 0.00 41.68 3.18
29 30 3.280197 AGTTCCTCCGTAGACTCCTAC 57.720 52.381 0.00 0.00 41.38 3.18
30 31 4.313020 AAAGTTCCTCCGTAGACTCCTA 57.687 45.455 0.00 0.00 0.00 2.94
31 32 2.903375 AAGTTCCTCCGTAGACTCCT 57.097 50.000 0.00 0.00 0.00 3.69
32 33 3.957591 AAAAGTTCCTCCGTAGACTCC 57.042 47.619 0.00 0.00 0.00 3.85
51 52 7.447238 AGTTCGTCCATTGAGAAGGATTAAAAA 59.553 33.333 0.00 0.00 36.11 1.94
52 53 6.940298 AGTTCGTCCATTGAGAAGGATTAAAA 59.060 34.615 0.00 0.00 36.11 1.52
53 54 6.472887 AGTTCGTCCATTGAGAAGGATTAAA 58.527 36.000 0.00 0.00 36.11 1.52
54 55 6.049955 AGTTCGTCCATTGAGAAGGATTAA 57.950 37.500 0.00 0.00 36.11 1.40
55 56 5.677319 AGTTCGTCCATTGAGAAGGATTA 57.323 39.130 0.00 0.00 36.11 1.75
56 57 4.559862 AGTTCGTCCATTGAGAAGGATT 57.440 40.909 0.00 0.00 36.11 3.01
57 58 4.020218 TCAAGTTCGTCCATTGAGAAGGAT 60.020 41.667 0.00 0.00 36.11 3.24
58 59 3.323691 TCAAGTTCGTCCATTGAGAAGGA 59.676 43.478 0.00 0.00 0.00 3.36
59 60 3.664107 TCAAGTTCGTCCATTGAGAAGG 58.336 45.455 0.00 0.00 0.00 3.46
63 64 3.257393 CTCCTCAAGTTCGTCCATTGAG 58.743 50.000 7.10 7.10 46.11 3.02
64 65 2.028112 CCTCCTCAAGTTCGTCCATTGA 60.028 50.000 0.00 0.00 0.00 2.57
65 66 2.028112 TCCTCCTCAAGTTCGTCCATTG 60.028 50.000 0.00 0.00 0.00 2.82
66 67 2.257207 TCCTCCTCAAGTTCGTCCATT 58.743 47.619 0.00 0.00 0.00 3.16
67 68 1.938585 TCCTCCTCAAGTTCGTCCAT 58.061 50.000 0.00 0.00 0.00 3.41
68 69 1.712056 TTCCTCCTCAAGTTCGTCCA 58.288 50.000 0.00 0.00 0.00 4.02
69 70 2.806818 GTTTTCCTCCTCAAGTTCGTCC 59.193 50.000 0.00 0.00 0.00 4.79
70 71 2.806818 GGTTTTCCTCCTCAAGTTCGTC 59.193 50.000 0.00 0.00 36.94 4.20
71 72 2.486727 GGGTTTTCCTCCTCAAGTTCGT 60.487 50.000 0.00 0.00 40.46 3.85
72 73 2.152016 GGGTTTTCCTCCTCAAGTTCG 58.848 52.381 0.00 0.00 40.46 3.95
73 74 2.152016 CGGGTTTTCCTCCTCAAGTTC 58.848 52.381 0.00 0.00 40.46 3.01
74 75 1.772453 TCGGGTTTTCCTCCTCAAGTT 59.228 47.619 0.00 0.00 40.46 2.66
75 76 1.430992 TCGGGTTTTCCTCCTCAAGT 58.569 50.000 0.00 0.00 40.46 3.16
76 77 2.561478 TTCGGGTTTTCCTCCTCAAG 57.439 50.000 0.00 0.00 40.46 3.02
77 78 2.440253 TCTTTCGGGTTTTCCTCCTCAA 59.560 45.455 0.00 0.00 40.46 3.02
78 79 2.051692 TCTTTCGGGTTTTCCTCCTCA 58.948 47.619 0.00 0.00 40.46 3.86
79 80 2.038689 AGTCTTTCGGGTTTTCCTCCTC 59.961 50.000 0.00 0.00 40.46 3.71
80 81 2.055579 AGTCTTTCGGGTTTTCCTCCT 58.944 47.619 0.00 0.00 40.46 3.69
81 82 2.152016 CAGTCTTTCGGGTTTTCCTCC 58.848 52.381 0.00 0.00 40.46 4.30
82 83 2.806818 GTCAGTCTTTCGGGTTTTCCTC 59.193 50.000 0.00 0.00 40.46 3.71
83 84 2.438392 AGTCAGTCTTTCGGGTTTTCCT 59.562 45.455 0.00 0.00 40.46 3.36
84 85 2.847441 AGTCAGTCTTTCGGGTTTTCC 58.153 47.619 0.00 0.00 39.75 3.13
85 86 5.996669 TTAAGTCAGTCTTTCGGGTTTTC 57.003 39.130 0.00 0.00 37.56 2.29
86 87 6.117488 TCTTTAAGTCAGTCTTTCGGGTTTT 58.883 36.000 0.00 0.00 37.56 2.43
87 88 5.677567 TCTTTAAGTCAGTCTTTCGGGTTT 58.322 37.500 0.00 0.00 37.56 3.27
88 89 5.070047 TCTCTTTAAGTCAGTCTTTCGGGTT 59.930 40.000 0.00 0.00 37.56 4.11
89 90 4.587684 TCTCTTTAAGTCAGTCTTTCGGGT 59.412 41.667 0.00 0.00 37.56 5.28
90 91 5.135508 TCTCTTTAAGTCAGTCTTTCGGG 57.864 43.478 0.00 0.00 37.56 5.14
91 92 5.119434 GCTTCTCTTTAAGTCAGTCTTTCGG 59.881 44.000 0.00 0.00 37.56 4.30
92 93 5.164138 CGCTTCTCTTTAAGTCAGTCTTTCG 60.164 44.000 0.00 0.00 37.56 3.46
93 94 5.388994 GCGCTTCTCTTTAAGTCAGTCTTTC 60.389 44.000 0.00 0.00 37.56 2.62
94 95 4.449405 GCGCTTCTCTTTAAGTCAGTCTTT 59.551 41.667 0.00 0.00 37.56 2.52
95 96 3.991121 GCGCTTCTCTTTAAGTCAGTCTT 59.009 43.478 0.00 0.00 39.89 3.01
96 97 3.580731 GCGCTTCTCTTTAAGTCAGTCT 58.419 45.455 0.00 0.00 0.00 3.24
97 98 2.668945 GGCGCTTCTCTTTAAGTCAGTC 59.331 50.000 7.64 0.00 0.00 3.51
98 99 2.037251 TGGCGCTTCTCTTTAAGTCAGT 59.963 45.455 7.64 0.00 0.00 3.41
99 100 2.688507 TGGCGCTTCTCTTTAAGTCAG 58.311 47.619 7.64 0.00 0.00 3.51
100 101 2.831685 TGGCGCTTCTCTTTAAGTCA 57.168 45.000 7.64 0.00 0.00 3.41
101 102 3.262420 TGATGGCGCTTCTCTTTAAGTC 58.738 45.455 7.64 0.00 0.00 3.01
102 103 3.334583 TGATGGCGCTTCTCTTTAAGT 57.665 42.857 7.64 0.00 0.00 2.24
103 104 3.249559 GGATGATGGCGCTTCTCTTTAAG 59.750 47.826 7.64 0.00 0.00 1.85
104 105 3.206150 GGATGATGGCGCTTCTCTTTAA 58.794 45.455 7.64 0.00 0.00 1.52
105 106 2.803133 CGGATGATGGCGCTTCTCTTTA 60.803 50.000 7.64 0.00 0.00 1.85
106 107 1.673168 GGATGATGGCGCTTCTCTTT 58.327 50.000 7.64 0.00 0.00 2.52
107 108 0.531532 CGGATGATGGCGCTTCTCTT 60.532 55.000 7.64 0.00 0.00 2.85
108 109 1.068753 CGGATGATGGCGCTTCTCT 59.931 57.895 7.64 0.00 0.00 3.10
109 110 1.218230 GACGGATGATGGCGCTTCTC 61.218 60.000 7.64 2.14 0.00 2.87
110 111 1.227380 GACGGATGATGGCGCTTCT 60.227 57.895 7.64 0.00 0.00 2.85
111 112 2.247437 GGACGGATGATGGCGCTTC 61.247 63.158 7.64 5.58 0.00 3.86
112 113 2.203070 GGACGGATGATGGCGCTT 60.203 61.111 7.64 0.00 0.00 4.68
113 114 2.535485 TTTGGACGGATGATGGCGCT 62.535 55.000 7.64 0.00 0.00 5.92
114 115 2.112198 TTTGGACGGATGATGGCGC 61.112 57.895 0.00 0.00 0.00 6.53
115 116 1.721487 GTTTGGACGGATGATGGCG 59.279 57.895 0.00 0.00 0.00 5.69
116 117 1.721487 CGTTTGGACGGATGATGGC 59.279 57.895 0.00 0.00 45.32 4.40
126 127 3.365265 CAGGGGCAGCGTTTGGAC 61.365 66.667 0.00 0.00 0.00 4.02
134 135 2.608970 TTAATCCTCGCAGGGGCAGC 62.609 60.000 2.86 0.00 41.24 5.25
135 136 0.107214 TTTAATCCTCGCAGGGGCAG 60.107 55.000 2.86 0.00 41.24 4.85
136 137 0.329931 TTTTAATCCTCGCAGGGGCA 59.670 50.000 2.86 0.00 41.24 5.36
137 138 0.738975 GTTTTAATCCTCGCAGGGGC 59.261 55.000 2.86 0.00 35.59 5.80
138 139 1.389555 GGTTTTAATCCTCGCAGGGG 58.610 55.000 2.86 0.00 35.59 4.79
139 140 1.064685 AGGGTTTTAATCCTCGCAGGG 60.065 52.381 2.86 0.00 32.95 4.45
140 141 2.420058 AGGGTTTTAATCCTCGCAGG 57.580 50.000 0.00 0.00 32.95 4.85
141 142 3.626217 GGTTAGGGTTTTAATCCTCGCAG 59.374 47.826 0.00 0.00 39.27 5.18
142 143 3.009253 TGGTTAGGGTTTTAATCCTCGCA 59.991 43.478 0.00 0.00 39.27 5.10
143 144 3.613030 TGGTTAGGGTTTTAATCCTCGC 58.387 45.455 0.00 0.00 39.27 5.03
144 145 5.681639 AGATGGTTAGGGTTTTAATCCTCG 58.318 41.667 0.00 0.00 39.27 4.63
145 146 7.803131 AGTAGATGGTTAGGGTTTTAATCCTC 58.197 38.462 0.00 0.00 39.27 3.71
146 147 7.766736 AGTAGATGGTTAGGGTTTTAATCCT 57.233 36.000 0.00 0.00 43.47 3.24
147 148 7.660617 GCTAGTAGATGGTTAGGGTTTTAATCC 59.339 40.741 0.00 0.00 0.00 3.01
148 149 7.660617 GGCTAGTAGATGGTTAGGGTTTTAATC 59.339 40.741 0.00 0.00 0.00 1.75
149 150 7.515586 GGCTAGTAGATGGTTAGGGTTTTAAT 58.484 38.462 0.00 0.00 0.00 1.40
150 151 6.407299 CGGCTAGTAGATGGTTAGGGTTTTAA 60.407 42.308 0.00 0.00 0.00 1.52
151 152 5.069516 CGGCTAGTAGATGGTTAGGGTTTTA 59.930 44.000 0.00 0.00 0.00 1.52
152 153 4.141779 CGGCTAGTAGATGGTTAGGGTTTT 60.142 45.833 0.00 0.00 0.00 2.43
153 154 3.387050 CGGCTAGTAGATGGTTAGGGTTT 59.613 47.826 0.00 0.00 0.00 3.27
154 155 2.963782 CGGCTAGTAGATGGTTAGGGTT 59.036 50.000 0.00 0.00 0.00 4.11
155 156 2.595238 CGGCTAGTAGATGGTTAGGGT 58.405 52.381 0.00 0.00 0.00 4.34
156 157 1.893801 CCGGCTAGTAGATGGTTAGGG 59.106 57.143 0.00 0.00 0.00 3.53
157 158 2.820787 CTCCGGCTAGTAGATGGTTAGG 59.179 54.545 0.00 0.00 0.00 2.69
158 159 2.229302 GCTCCGGCTAGTAGATGGTTAG 59.771 54.545 0.00 0.00 35.22 2.34
159 160 2.236766 GCTCCGGCTAGTAGATGGTTA 58.763 52.381 0.00 0.00 35.22 2.85
160 161 1.041437 GCTCCGGCTAGTAGATGGTT 58.959 55.000 0.00 0.00 35.22 3.67
161 162 0.828343 GGCTCCGGCTAGTAGATGGT 60.828 60.000 0.00 0.00 38.73 3.55
162 163 1.867919 CGGCTCCGGCTAGTAGATGG 61.868 65.000 0.00 1.44 38.73 3.51
163 164 0.889638 TCGGCTCCGGCTAGTAGATG 60.890 60.000 8.59 0.00 40.25 2.90
164 165 0.606944 CTCGGCTCCGGCTAGTAGAT 60.607 60.000 8.59 0.00 40.25 1.98
165 166 1.227883 CTCGGCTCCGGCTAGTAGA 60.228 63.158 8.59 0.00 40.25 2.59
166 167 2.262303 CCTCGGCTCCGGCTAGTAG 61.262 68.421 8.59 0.00 40.25 2.57
167 168 2.203308 CCTCGGCTCCGGCTAGTA 60.203 66.667 8.59 0.00 40.25 1.82
176 177 1.078143 ATTTCTGGTGCCTCGGCTC 60.078 57.895 9.65 5.45 42.51 4.70
177 178 1.078143 GATTTCTGGTGCCTCGGCT 60.078 57.895 9.65 0.00 42.51 5.52
178 179 2.115291 GGATTTCTGGTGCCTCGGC 61.115 63.158 0.00 0.00 42.35 5.54
179 180 1.452108 GGGATTTCTGGTGCCTCGG 60.452 63.158 0.00 0.00 0.00 4.63
180 181 1.452108 GGGGATTTCTGGTGCCTCG 60.452 63.158 0.00 0.00 0.00 4.63
181 182 0.106967 GAGGGGATTTCTGGTGCCTC 60.107 60.000 0.00 0.00 0.00 4.70
182 183 1.575447 GGAGGGGATTTCTGGTGCCT 61.575 60.000 0.00 0.00 0.00 4.75
183 184 1.076705 GGAGGGGATTTCTGGTGCC 60.077 63.158 0.00 0.00 0.00 5.01
184 185 1.076705 GGGAGGGGATTTCTGGTGC 60.077 63.158 0.00 0.00 0.00 5.01
185 186 1.615262 GGGGAGGGGATTTCTGGTG 59.385 63.158 0.00 0.00 0.00 4.17
186 187 1.622752 GGGGGAGGGGATTTCTGGT 60.623 63.158 0.00 0.00 0.00 4.00
187 188 3.346870 GGGGGAGGGGATTTCTGG 58.653 66.667 0.00 0.00 0.00 3.86
213 214 4.742201 CCGTCTGCCACTCCGGTG 62.742 72.222 0.00 0.00 42.65 4.94
214 215 4.988716 TCCGTCTGCCACTCCGGT 62.989 66.667 0.00 0.00 41.17 5.28
215 216 4.135153 CTCCGTCTGCCACTCCGG 62.135 72.222 0.00 0.00 41.75 5.14
216 217 3.057547 CTCTCCGTCTGCCACTCCG 62.058 68.421 0.00 0.00 0.00 4.63
217 218 2.716017 CCTCTCCGTCTGCCACTCC 61.716 68.421 0.00 0.00 0.00 3.85
218 219 1.662438 CTCCTCTCCGTCTGCCACTC 61.662 65.000 0.00 0.00 0.00 3.51
219 220 1.680651 CTCCTCTCCGTCTGCCACT 60.681 63.158 0.00 0.00 0.00 4.00
220 221 2.716017 CCTCCTCTCCGTCTGCCAC 61.716 68.421 0.00 0.00 0.00 5.01
221 222 2.363018 CCTCCTCTCCGTCTGCCA 60.363 66.667 0.00 0.00 0.00 4.92
222 223 3.844090 GCCTCCTCTCCGTCTGCC 61.844 72.222 0.00 0.00 0.00 4.85
223 224 4.200283 CGCCTCCTCTCCGTCTGC 62.200 72.222 0.00 0.00 0.00 4.26
224 225 1.388065 ATTCGCCTCCTCTCCGTCTG 61.388 60.000 0.00 0.00 0.00 3.51
225 226 0.684805 AATTCGCCTCCTCTCCGTCT 60.685 55.000 0.00 0.00 0.00 4.18
226 227 0.249114 GAATTCGCCTCCTCTCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
227 228 0.970937 TGAATTCGCCTCCTCTCCGT 60.971 55.000 0.04 0.00 0.00 4.69
228 229 0.528684 GTGAATTCGCCTCCTCTCCG 60.529 60.000 7.83 0.00 0.00 4.63
229 230 0.537188 TGTGAATTCGCCTCCTCTCC 59.463 55.000 16.14 0.00 0.00 3.71
230 231 1.478510 TCTGTGAATTCGCCTCCTCTC 59.521 52.381 16.14 0.00 0.00 3.20
231 232 1.480137 CTCTGTGAATTCGCCTCCTCT 59.520 52.381 16.14 0.00 0.00 3.69
232 233 1.205893 ACTCTGTGAATTCGCCTCCTC 59.794 52.381 16.14 0.00 0.00 3.71
233 234 1.270907 ACTCTGTGAATTCGCCTCCT 58.729 50.000 16.14 0.00 0.00 3.69
234 235 1.734465 CAACTCTGTGAATTCGCCTCC 59.266 52.381 16.14 0.00 0.00 4.30
235 236 1.129437 GCAACTCTGTGAATTCGCCTC 59.871 52.381 16.14 0.33 0.00 4.70
236 237 1.160137 GCAACTCTGTGAATTCGCCT 58.840 50.000 16.14 0.00 0.00 5.52
237 238 0.169009 GGCAACTCTGTGAATTCGCC 59.831 55.000 16.14 8.57 0.00 5.54
238 239 0.179215 CGGCAACTCTGTGAATTCGC 60.179 55.000 12.17 12.17 0.00 4.70
239 240 0.443869 CCGGCAACTCTGTGAATTCG 59.556 55.000 0.04 0.00 0.00 3.34
240 241 0.169009 GCCGGCAACTCTGTGAATTC 59.831 55.000 24.80 0.00 0.00 2.17
241 242 1.577328 CGCCGGCAACTCTGTGAATT 61.577 55.000 28.98 0.00 0.00 2.17
242 243 2.034879 CGCCGGCAACTCTGTGAAT 61.035 57.895 28.98 0.00 0.00 2.57
243 244 2.664851 CGCCGGCAACTCTGTGAA 60.665 61.111 28.98 0.00 0.00 3.18
244 245 4.680237 CCGCCGGCAACTCTGTGA 62.680 66.667 28.98 0.00 0.00 3.58
245 246 4.680237 TCCGCCGGCAACTCTGTG 62.680 66.667 28.98 7.02 0.00 3.66
246 247 4.379243 CTCCGCCGGCAACTCTGT 62.379 66.667 28.98 0.00 0.00 3.41
247 248 3.376935 ATCTCCGCCGGCAACTCTG 62.377 63.158 28.98 8.71 0.00 3.35
248 249 3.077556 ATCTCCGCCGGCAACTCT 61.078 61.111 28.98 4.38 0.00 3.24
249 250 2.586357 GATCTCCGCCGGCAACTC 60.586 66.667 28.98 11.36 0.00 3.01
250 251 2.859273 CTTGATCTCCGCCGGCAACT 62.859 60.000 28.98 5.35 0.00 3.16
251 252 2.435938 TTGATCTCCGCCGGCAAC 60.436 61.111 28.98 5.98 0.00 4.17
252 253 2.125147 CTTGATCTCCGCCGGCAA 60.125 61.111 28.98 13.23 0.00 4.52
253 254 4.161295 CCTTGATCTCCGCCGGCA 62.161 66.667 28.98 7.02 0.00 5.69
254 255 3.798954 CTCCTTGATCTCCGCCGGC 62.799 68.421 19.07 19.07 0.00 6.13
255 256 2.081425 CTCTCCTTGATCTCCGCCGG 62.081 65.000 0.00 0.00 0.00 6.13
256 257 1.361993 CTCTCCTTGATCTCCGCCG 59.638 63.158 0.00 0.00 0.00 6.46
257 258 0.757188 TCCTCTCCTTGATCTCCGCC 60.757 60.000 0.00 0.00 0.00 6.13
258 259 1.068434 CTTCCTCTCCTTGATCTCCGC 59.932 57.143 0.00 0.00 0.00 5.54
259 260 1.686052 CCTTCCTCTCCTTGATCTCCG 59.314 57.143 0.00 0.00 0.00 4.63
260 261 2.758130 ACCTTCCTCTCCTTGATCTCC 58.242 52.381 0.00 0.00 0.00 3.71
261 262 4.835284 AAACCTTCCTCTCCTTGATCTC 57.165 45.455 0.00 0.00 0.00 2.75
262 263 4.018870 GGAAAACCTTCCTCTCCTTGATCT 60.019 45.833 0.00 0.00 46.80 2.75
263 264 4.265893 GGAAAACCTTCCTCTCCTTGATC 58.734 47.826 0.00 0.00 46.80 2.92
264 265 4.308526 GGAAAACCTTCCTCTCCTTGAT 57.691 45.455 0.00 0.00 46.80 2.57
265 266 3.790089 GGAAAACCTTCCTCTCCTTGA 57.210 47.619 0.00 0.00 46.80 3.02
278 279 0.037160 TAAGGCGACCAGGGAAAACC 59.963 55.000 0.00 0.00 40.67 3.27
279 280 1.162698 GTAAGGCGACCAGGGAAAAC 58.837 55.000 0.00 0.00 0.00 2.43
280 281 0.320946 CGTAAGGCGACCAGGGAAAA 60.321 55.000 0.00 0.00 44.77 2.29
281 282 1.186917 TCGTAAGGCGACCAGGGAAA 61.187 55.000 0.00 0.00 45.68 3.13
282 283 1.601419 CTCGTAAGGCGACCAGGGAA 61.601 60.000 0.00 0.00 45.68 3.97
283 284 2.036098 TCGTAAGGCGACCAGGGA 59.964 61.111 0.00 0.00 45.68 4.20
284 285 2.005960 CTCTCGTAAGGCGACCAGGG 62.006 65.000 0.00 0.00 45.68 4.45
285 286 1.433879 CTCTCGTAAGGCGACCAGG 59.566 63.158 0.00 0.00 45.68 4.45
286 287 1.433879 CCTCTCGTAAGGCGACCAG 59.566 63.158 0.00 0.00 45.68 4.00
287 288 2.050350 CCCTCTCGTAAGGCGACCA 61.050 63.158 0.00 0.00 45.68 4.02
288 289 2.783288 CCCCTCTCGTAAGGCGACC 61.783 68.421 0.00 0.00 45.68 4.79
289 290 1.318158 TTCCCCTCTCGTAAGGCGAC 61.318 60.000 0.00 0.00 45.68 5.19
291 292 1.437986 CTTCCCCTCTCGTAAGGCG 59.562 63.158 0.92 0.00 43.01 5.52
292 293 0.686769 TCCTTCCCCTCTCGTAAGGC 60.687 60.000 0.00 0.00 38.70 4.35
293 294 1.861982 TTCCTTCCCCTCTCGTAAGG 58.138 55.000 0.00 0.00 39.93 2.69
294 295 3.514309 TCTTTTCCTTCCCCTCTCGTAAG 59.486 47.826 0.00 0.00 0.00 2.34
295 296 3.260128 GTCTTTTCCTTCCCCTCTCGTAA 59.740 47.826 0.00 0.00 0.00 3.18
296 297 2.830321 GTCTTTTCCTTCCCCTCTCGTA 59.170 50.000 0.00 0.00 0.00 3.43
297 298 1.624312 GTCTTTTCCTTCCCCTCTCGT 59.376 52.381 0.00 0.00 0.00 4.18
298 299 1.903183 AGTCTTTTCCTTCCCCTCTCG 59.097 52.381 0.00 0.00 0.00 4.04
299 300 2.640332 ACAGTCTTTTCCTTCCCCTCTC 59.360 50.000 0.00 0.00 0.00 3.20
300 301 2.707554 ACAGTCTTTTCCTTCCCCTCT 58.292 47.619 0.00 0.00 0.00 3.69
301 302 3.149981 CAACAGTCTTTTCCTTCCCCTC 58.850 50.000 0.00 0.00 0.00 4.30
302 303 2.783510 TCAACAGTCTTTTCCTTCCCCT 59.216 45.455 0.00 0.00 0.00 4.79
303 304 3.223674 TCAACAGTCTTTTCCTTCCCC 57.776 47.619 0.00 0.00 0.00 4.81
304 305 3.437049 CGATCAACAGTCTTTTCCTTCCC 59.563 47.826 0.00 0.00 0.00 3.97
305 306 4.315803 TCGATCAACAGTCTTTTCCTTCC 58.684 43.478 0.00 0.00 0.00 3.46
306 307 5.230942 TCTCGATCAACAGTCTTTTCCTTC 58.769 41.667 0.00 0.00 0.00 3.46
307 308 5.215252 TCTCGATCAACAGTCTTTTCCTT 57.785 39.130 0.00 0.00 0.00 3.36
308 309 4.322349 CCTCTCGATCAACAGTCTTTTCCT 60.322 45.833 0.00 0.00 0.00 3.36
309 310 3.929610 CCTCTCGATCAACAGTCTTTTCC 59.070 47.826 0.00 0.00 0.00 3.13
310 311 4.810790 TCCTCTCGATCAACAGTCTTTTC 58.189 43.478 0.00 0.00 0.00 2.29
311 312 4.322349 CCTCCTCTCGATCAACAGTCTTTT 60.322 45.833 0.00 0.00 0.00 2.27
312 313 3.194542 CCTCCTCTCGATCAACAGTCTTT 59.805 47.826 0.00 0.00 0.00 2.52
313 314 2.757868 CCTCCTCTCGATCAACAGTCTT 59.242 50.000 0.00 0.00 0.00 3.01
314 315 2.025793 TCCTCCTCTCGATCAACAGTCT 60.026 50.000 0.00 0.00 0.00 3.24
315 316 2.370349 TCCTCCTCTCGATCAACAGTC 58.630 52.381 0.00 0.00 0.00 3.51
316 317 2.516227 TCCTCCTCTCGATCAACAGT 57.484 50.000 0.00 0.00 0.00 3.55
317 318 3.779759 CTTTCCTCCTCTCGATCAACAG 58.220 50.000 0.00 0.00 0.00 3.16
318 319 2.093973 GCTTTCCTCCTCTCGATCAACA 60.094 50.000 0.00 0.00 0.00 3.33
319 320 2.167487 AGCTTTCCTCCTCTCGATCAAC 59.833 50.000 0.00 0.00 0.00 3.18
320 321 2.428890 GAGCTTTCCTCCTCTCGATCAA 59.571 50.000 0.00 0.00 34.35 2.57
321 322 2.028130 GAGCTTTCCTCCTCTCGATCA 58.972 52.381 0.00 0.00 34.35 2.92
322 323 2.293399 GAGAGCTTTCCTCCTCTCGATC 59.707 54.545 2.34 0.00 43.09 3.69
323 324 2.306847 GAGAGCTTTCCTCCTCTCGAT 58.693 52.381 2.34 0.00 43.09 3.59
324 325 1.757682 GAGAGCTTTCCTCCTCTCGA 58.242 55.000 2.34 0.00 43.09 4.04
327 328 2.621556 ACTGAGAGCTTTCCTCCTCT 57.378 50.000 1.16 0.00 41.74 3.69
328 329 2.831526 AGAACTGAGAGCTTTCCTCCTC 59.168 50.000 1.16 0.00 41.74 3.71
329 330 2.901291 AGAACTGAGAGCTTTCCTCCT 58.099 47.619 1.16 0.00 41.74 3.69
330 331 5.351948 AATAGAACTGAGAGCTTTCCTCC 57.648 43.478 1.16 0.00 41.74 4.30
331 332 7.721402 TCATAATAGAACTGAGAGCTTTCCTC 58.279 38.462 1.16 0.00 41.07 3.71
332 333 7.667575 TCATAATAGAACTGAGAGCTTTCCT 57.332 36.000 1.16 0.00 0.00 3.36
333 334 8.772705 CAATCATAATAGAACTGAGAGCTTTCC 58.227 37.037 1.16 0.00 0.00 3.13
334 335 8.772705 CCAATCATAATAGAACTGAGAGCTTTC 58.227 37.037 0.00 0.00 0.00 2.62
335 336 8.489489 TCCAATCATAATAGAACTGAGAGCTTT 58.511 33.333 0.00 0.00 0.00 3.51
336 337 8.027524 TCCAATCATAATAGAACTGAGAGCTT 57.972 34.615 0.00 0.00 0.00 3.74
337 338 7.609097 TCCAATCATAATAGAACTGAGAGCT 57.391 36.000 0.00 0.00 0.00 4.09
338 339 7.387397 CCTTCCAATCATAATAGAACTGAGAGC 59.613 40.741 0.00 0.00 0.00 4.09
339 340 7.877097 CCCTTCCAATCATAATAGAACTGAGAG 59.123 40.741 0.00 0.00 0.00 3.20
340 341 7.202130 CCCCTTCCAATCATAATAGAACTGAGA 60.202 40.741 0.00 0.00 0.00 3.27
341 342 6.939163 CCCCTTCCAATCATAATAGAACTGAG 59.061 42.308 0.00 0.00 0.00 3.35
342 343 6.389869 ACCCCTTCCAATCATAATAGAACTGA 59.610 38.462 0.00 0.00 0.00 3.41
343 344 6.605119 ACCCCTTCCAATCATAATAGAACTG 58.395 40.000 0.00 0.00 0.00 3.16
344 345 6.848562 ACCCCTTCCAATCATAATAGAACT 57.151 37.500 0.00 0.00 0.00 3.01
345 346 7.898014 AAACCCCTTCCAATCATAATAGAAC 57.102 36.000 0.00 0.00 0.00 3.01
346 347 7.147742 GCAAAACCCCTTCCAATCATAATAGAA 60.148 37.037 0.00 0.00 0.00 2.10
374 375 6.320164 ACCTACATAGAGAAGATGTCACACTC 59.680 42.308 0.00 0.00 38.47 3.51
375 376 6.191315 ACCTACATAGAGAAGATGTCACACT 58.809 40.000 0.00 0.00 38.47 3.55
376 377 6.458232 ACCTACATAGAGAAGATGTCACAC 57.542 41.667 0.00 0.00 38.47 3.82
377 378 7.574607 TCTACCTACATAGAGAAGATGTCACA 58.425 38.462 0.00 0.00 38.47 3.58
378 379 8.453238 TTCTACCTACATAGAGAAGATGTCAC 57.547 38.462 0.00 0.00 38.47 3.67
379 380 9.475620 TTTTCTACCTACATAGAGAAGATGTCA 57.524 33.333 0.00 0.00 38.47 3.58
387 388 9.798994 GTTTCGATTTTTCTACCTACATAGAGA 57.201 33.333 0.00 0.00 32.78 3.10
388 389 9.582431 TGTTTCGATTTTTCTACCTACATAGAG 57.418 33.333 0.00 0.00 32.78 2.43
389 390 9.582431 CTGTTTCGATTTTTCTACCTACATAGA 57.418 33.333 0.00 0.00 0.00 1.98
390 391 9.367444 ACTGTTTCGATTTTTCTACCTACATAG 57.633 33.333 0.00 0.00 0.00 2.23
394 395 9.378597 GAAAACTGTTTCGATTTTTCTACCTAC 57.621 33.333 6.20 0.00 35.81 3.18
413 414 7.636259 TTCTTATGGAAAAATGCGAAAACTG 57.364 32.000 0.00 0.00 0.00 3.16
414 415 9.573133 CTATTCTTATGGAAAAATGCGAAAACT 57.427 29.630 0.00 0.00 37.49 2.66
420 421 8.909708 TGTTTCTATTCTTATGGAAAAATGCG 57.090 30.769 0.00 0.00 41.19 4.73
440 441 7.619964 TTTAAATCCCGGAGTAATCTGTTTC 57.380 36.000 0.73 0.00 0.00 2.78
445 446 9.475620 AAAAGAATTTAAATCCCGGAGTAATCT 57.524 29.630 0.73 0.00 37.28 2.40
449 450 7.280652 CGGTAAAAGAATTTAAATCCCGGAGTA 59.719 37.037 0.73 0.00 37.28 2.59
450 451 6.094464 CGGTAAAAGAATTTAAATCCCGGAGT 59.906 38.462 0.73 0.00 37.28 3.85
451 452 6.316890 TCGGTAAAAGAATTTAAATCCCGGAG 59.683 38.462 0.73 0.00 37.28 4.63
452 453 6.179040 TCGGTAAAAGAATTTAAATCCCGGA 58.821 36.000 0.73 0.00 37.28 5.14
457 458 7.478322 GGACCCTCGGTAAAAGAATTTAAATC 58.522 38.462 0.10 0.00 33.91 2.17
458 459 6.094464 CGGACCCTCGGTAAAAGAATTTAAAT 59.906 38.462 0.00 0.00 33.91 1.40
462 463 3.244665 ACGGACCCTCGGTAAAAGAATTT 60.245 43.478 0.00 0.00 36.16 1.82
463 464 2.303890 ACGGACCCTCGGTAAAAGAATT 59.696 45.455 0.00 0.00 35.25 2.17
467 468 0.108472 GGACGGACCCTCGGTAAAAG 60.108 60.000 0.00 0.00 35.25 2.27
471 472 1.755395 CATGGACGGACCCTCGGTA 60.755 63.158 0.00 0.00 35.25 4.02
495 503 1.537202 GCATTCTTTCACTTGGCGAGT 59.463 47.619 0.18 0.18 39.89 4.18
507 515 4.586001 ACAACTTCAGGATGTGCATTCTTT 59.414 37.500 0.00 0.00 37.40 2.52
522 530 2.363306 AAGATGGTGCCACAACTTCA 57.637 45.000 0.00 0.00 29.24 3.02
532 540 5.880054 ATGTAACTTGTGTAAGATGGTGC 57.120 39.130 0.00 0.00 37.36 5.01
562 570 5.251764 AGAAGAGATGCTTATTGTGCACTT 58.748 37.500 19.41 8.24 43.59 3.16
563 571 4.841422 AGAAGAGATGCTTATTGTGCACT 58.159 39.130 19.41 0.28 43.59 4.40
572 704 5.682234 TGGATGTGAAGAAGAGATGCTTA 57.318 39.130 0.00 0.00 36.83 3.09
604 741 2.158842 AGAATGGAGAATGCTTCGGGAG 60.159 50.000 0.00 0.00 34.02 4.30
640 777 0.665298 GGTGGCAAGCTAAGCTATGC 59.335 55.000 10.47 4.26 38.25 3.14
641 778 1.133976 AGGGTGGCAAGCTAAGCTATG 60.134 52.381 10.47 0.00 38.25 2.23
642 779 1.133976 CAGGGTGGCAAGCTAAGCTAT 60.134 52.381 10.47 0.00 38.25 2.97
643 780 0.253044 CAGGGTGGCAAGCTAAGCTA 59.747 55.000 10.47 2.25 38.25 3.32
682 823 4.037565 GGAAAGGTTTAGGGATATTTGCGG 59.962 45.833 0.00 0.00 0.00 5.69
762 916 3.744238 TGCATGCATACGTGTAGGTAT 57.256 42.857 18.46 0.00 35.09 2.73
794 968 6.658391 GGAGGAGATTGATGGATGGAATTAAG 59.342 42.308 0.00 0.00 0.00 1.85
808 982 2.045047 AGAGGTGGAAGGAGGAGATTGA 59.955 50.000 0.00 0.00 0.00 2.57
854 1034 1.888512 GGCATGGCGATGGTTGATTAT 59.111 47.619 10.93 0.00 0.00 1.28
858 1038 1.303970 TTGGCATGGCGATGGTTGA 60.304 52.632 15.27 0.00 0.00 3.18
909 1107 1.511613 TGGGATGAGATGGGAAGGTC 58.488 55.000 0.00 0.00 0.00 3.85
947 1164 0.774276 TGCCTTGGTGGTGGTGATTA 59.226 50.000 0.00 0.00 38.35 1.75
948 1165 0.827507 GTGCCTTGGTGGTGGTGATT 60.828 55.000 0.00 0.00 38.35 2.57
949 1166 1.228552 GTGCCTTGGTGGTGGTGAT 60.229 57.895 0.00 0.00 38.35 3.06
950 1167 2.194597 GTGCCTTGGTGGTGGTGA 59.805 61.111 0.00 0.00 38.35 4.02
953 1170 2.123511 TTGGTGCCTTGGTGGTGG 60.124 61.111 0.00 0.00 38.35 4.61
956 1173 1.760086 TTGGTTGGTGCCTTGGTGG 60.760 57.895 0.00 0.00 39.35 4.61
957 1174 1.441311 GTTGGTTGGTGCCTTGGTG 59.559 57.895 0.00 0.00 0.00 4.17
962 1179 1.525995 CTGTCGTTGGTTGGTGCCT 60.526 57.895 0.00 0.00 0.00 4.75
967 1184 0.588252 CAAGCTCTGTCGTTGGTTGG 59.412 55.000 0.00 0.00 36.09 3.77
968 1185 0.040958 GCAAGCTCTGTCGTTGGTTG 60.041 55.000 0.00 0.00 40.71 3.77
977 1227 0.461961 GGATCGTAGGCAAGCTCTGT 59.538 55.000 0.00 0.00 0.00 3.41
978 1228 0.249657 GGGATCGTAGGCAAGCTCTG 60.250 60.000 0.00 0.00 0.00 3.35
980 1230 0.032815 GAGGGATCGTAGGCAAGCTC 59.967 60.000 0.00 0.00 0.00 4.09
981 1231 0.687757 TGAGGGATCGTAGGCAAGCT 60.688 55.000 0.00 0.00 0.00 3.74
982 1232 0.394565 ATGAGGGATCGTAGGCAAGC 59.605 55.000 0.00 0.00 0.00 4.01
993 1243 4.195334 GTGGCCGCCATGAGGGAT 62.195 66.667 16.96 0.00 40.01 3.85
1011 1264 4.591399 TGCTGCTGCTTGGTGCCT 62.591 61.111 17.00 0.00 42.00 4.75
1053 1318 1.599797 GAACTTGGGGTCCACCACG 60.600 63.158 0.00 0.00 44.25 4.94
1248 1516 2.685017 ATGTCCTCGAGGCTGGCA 60.685 61.111 27.39 20.63 34.44 4.92
1367 1641 1.752436 GCTTCCTCCTGATCTCCTCGA 60.752 57.143 0.00 0.00 0.00 4.04
1371 1645 1.753368 CGGGCTTCCTCCTGATCTCC 61.753 65.000 0.00 0.00 34.34 3.71
1390 1664 2.982744 GCTTGGCAACCTCCTTCGC 61.983 63.158 0.00 0.00 0.00 4.70
1518 1792 0.671781 TCTCTTCCTCTTGCTTGCGC 60.672 55.000 0.00 0.00 0.00 6.09
1551 1825 2.879233 TTGGTCCTTCTTCGCCGCT 61.879 57.895 0.00 0.00 0.00 5.52
1575 1849 0.695347 CTTGAGGAGCCTTGGGTCTT 59.305 55.000 16.95 10.67 0.00 3.01
1578 1852 2.759795 GCTTGAGGAGCCTTGGGT 59.240 61.111 0.00 0.00 46.01 4.51
1642 1916 4.767255 CGCCTTGGCCTTCTCGCT 62.767 66.667 3.32 0.00 0.00 4.93
1652 1926 3.365265 GGTCAACTGCCGCCTTGG 61.365 66.667 0.00 0.00 42.50 3.61
1688 1962 4.760047 CGCCGCACAGCCTAACCT 62.760 66.667 0.00 0.00 0.00 3.50
1872 2146 2.386661 TCTTCTTCGCCATCTCCAAC 57.613 50.000 0.00 0.00 0.00 3.77
1881 2155 1.270893 ACCTCCTTGTTCTTCTTCGCC 60.271 52.381 0.00 0.00 0.00 5.54
1886 2160 2.231721 GCGACTACCTCCTTGTTCTTCT 59.768 50.000 0.00 0.00 0.00 2.85
1947 2221 1.819288 CACTTACCGAAGAGCCTCTGA 59.181 52.381 0.00 0.00 36.45 3.27
1978 2255 3.452627 GTGAGATGGTCATCCTTGGTACT 59.547 47.826 7.28 0.00 37.56 2.73
2005 2282 1.495584 ATATTACGCGCCCGCTGTTG 61.496 55.000 5.73 0.00 39.32 3.33
2006 2283 1.227438 ATATTACGCGCCCGCTGTT 60.227 52.632 5.73 0.00 39.32 3.16
2010 2287 0.940519 TGTACATATTACGCGCCCGC 60.941 55.000 5.73 1.98 38.22 6.13
2012 2289 1.425412 CCTGTACATATTACGCGCCC 58.575 55.000 5.73 0.00 0.00 6.13
2013 2290 0.788391 GCCTGTACATATTACGCGCC 59.212 55.000 5.73 0.00 0.00 6.53
2014 2291 1.779569 AGCCTGTACATATTACGCGC 58.220 50.000 5.73 0.00 0.00 6.86
2015 2292 4.921515 ACAATAGCCTGTACATATTACGCG 59.078 41.667 3.53 3.53 0.00 6.01
2083 2369 7.094631 CACACTTTGATTGATTGATTCCACAT 58.905 34.615 0.00 0.00 0.00 3.21
2099 2385 5.877564 TGTTGTCTGAATGTACACACTTTGA 59.122 36.000 0.00 0.00 0.00 2.69
2222 6365 1.608336 TGAGGGACGGACGGATGTT 60.608 57.895 0.00 0.00 0.00 2.71
2223 6366 2.036731 TGAGGGACGGACGGATGT 59.963 61.111 0.00 0.00 0.00 3.06
2241 6384 3.203487 AGGGAGTTGTAGAGGACTAGAGG 59.797 52.174 0.00 0.00 0.00 3.69
2242 6385 4.513406 AGGGAGTTGTAGAGGACTAGAG 57.487 50.000 0.00 0.00 0.00 2.43
2243 6386 4.141436 GCTAGGGAGTTGTAGAGGACTAGA 60.141 50.000 0.00 0.00 30.86 2.43
2244 6387 4.139038 GCTAGGGAGTTGTAGAGGACTAG 58.861 52.174 0.00 0.00 0.00 2.57
2245 6388 3.526430 TGCTAGGGAGTTGTAGAGGACTA 59.474 47.826 0.00 0.00 0.00 2.59
2246 6389 2.312140 TGCTAGGGAGTTGTAGAGGACT 59.688 50.000 0.00 0.00 0.00 3.85
2247 6390 2.736347 TGCTAGGGAGTTGTAGAGGAC 58.264 52.381 0.00 0.00 0.00 3.85
2248 6391 3.567397 GATGCTAGGGAGTTGTAGAGGA 58.433 50.000 0.00 0.00 0.00 3.71
2283 6426 3.068165 ACAATCGATGAATAGCGGAGACA 59.932 43.478 0.00 0.00 36.15 3.41
2302 6445 5.324409 AGAATATTGCAGGGTCAAGAACAA 58.676 37.500 0.00 0.00 0.00 2.83
2303 6446 4.922206 AGAATATTGCAGGGTCAAGAACA 58.078 39.130 0.00 0.00 0.00 3.18
2320 6463 6.849697 AGGGACCACATTATAGGTTGAGAATA 59.150 38.462 0.00 0.00 38.50 1.75
2321 6464 5.672194 AGGGACCACATTATAGGTTGAGAAT 59.328 40.000 0.00 0.00 38.50 2.40
2322 6465 5.036916 AGGGACCACATTATAGGTTGAGAA 58.963 41.667 0.00 0.00 38.50 2.87
2362 6505 1.598130 GATACATCCCGCCACTGGC 60.598 63.158 10.35 10.35 46.75 4.85
2365 6508 0.468585 TACCGATACATCCCGCCACT 60.469 55.000 0.00 0.00 0.00 4.00
2384 6527 1.056125 TGATGGATGGTGGATCGCCT 61.056 55.000 6.52 0.00 34.70 5.52
2388 6531 3.117738 AGGAAACTGATGGATGGTGGATC 60.118 47.826 0.00 0.00 41.13 3.36
2420 6563 8.773404 ACAAGTTTATATGTAGTCAGACAACC 57.227 34.615 2.66 0.00 31.83 3.77
2492 6637 7.159372 TCTCCTCTATAAAAAGCTGAAACGTT 58.841 34.615 0.00 0.00 0.00 3.99
2495 6640 8.254508 TCTCTCTCCTCTATAAAAAGCTGAAAC 58.745 37.037 0.00 0.00 0.00 2.78
2496 6641 8.367660 TCTCTCTCCTCTATAAAAAGCTGAAA 57.632 34.615 0.00 0.00 0.00 2.69
2498 6643 7.350382 TCTCTCTCTCCTCTATAAAAAGCTGA 58.650 38.462 0.00 0.00 0.00 4.26
2501 6646 7.582667 ACTCTCTCTCTCCTCTATAAAAAGC 57.417 40.000 0.00 0.00 0.00 3.51
2509 6666 5.365605 CCACTCTAACTCTCTCTCTCCTCTA 59.634 48.000 0.00 0.00 0.00 2.43
2565 6722 5.966853 TTAACCCATGTGAGATGTATGGA 57.033 39.130 0.00 0.00 43.15 3.41
2891 7061 6.640499 TGAAATGCTTATTTTGGAACGACTTG 59.360 34.615 0.00 0.00 0.00 3.16
2892 7062 6.744112 TGAAATGCTTATTTTGGAACGACTT 58.256 32.000 0.00 0.00 0.00 3.01
2895 7065 8.600449 ATTTTGAAATGCTTATTTTGGAACGA 57.400 26.923 0.00 0.00 0.00 3.85
2917 7087 8.180267 TCGTTGCAATGTGATTTTTCAAAATTT 58.820 25.926 17.94 0.00 38.64 1.82
2920 7090 6.653273 TCGTTGCAATGTGATTTTTCAAAA 57.347 29.167 17.94 0.00 0.00 2.44
2930 7100 5.809562 AGTTTTTCAAATCGTTGCAATGTGA 59.190 32.000 17.94 11.75 34.50 3.58
2940 7110 9.796120 TTGAGTGAAATTAGTTTTTCAAATCGT 57.204 25.926 1.52 0.00 44.71 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.