Multiple sequence alignment - TraesCS1B01G470300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G470300 chr1B 100.000 3353 0 0 1 3353 678607528 678604176 0.000000e+00 6192.0
1 TraesCS1B01G470300 chr1B 92.099 2658 135 16 726 3353 678486763 678484151 0.000000e+00 3675.0
2 TraesCS1B01G470300 chr1B 91.647 2502 169 17 726 3222 678553556 678551090 0.000000e+00 3426.0
3 TraesCS1B01G470300 chr1B 90.192 2396 187 21 861 3219 641196816 641199200 0.000000e+00 3079.0
4 TraesCS1B01G470300 chr1B 94.336 1889 87 10 1470 3353 678311783 678313656 0.000000e+00 2878.0
5 TraesCS1B01G470300 chr1B 94.699 1679 76 8 1678 3353 678790439 678788771 0.000000e+00 2595.0
6 TraesCS1B01G470300 chr1B 95.221 1381 65 1 1973 3353 678444490 678443111 0.000000e+00 2183.0
7 TraesCS1B01G470300 chr1B 94.931 1381 67 3 1973 3353 678738784 678737407 0.000000e+00 2159.0
8 TraesCS1B01G470300 chr1B 91.330 1165 72 9 1161 2298 641111803 641112965 0.000000e+00 1565.0
9 TraesCS1B01G470300 chr1B 93.144 773 28 5 599 1366 678791225 678790473 0.000000e+00 1110.0
10 TraesCS1B01G470300 chr1B 90.150 599 25 11 726 1322 678753305 678752739 0.000000e+00 749.0
11 TraesCS1B01G470300 chr1B 87.382 634 46 16 992 1592 678445538 678444906 0.000000e+00 697.0
12 TraesCS1B01G470300 chr1B 86.054 631 58 4 992 1592 678739824 678739194 0.000000e+00 651.0
13 TraesCS1B01G470300 chr1B 96.040 303 11 1 1589 1891 678752510 678752209 3.010000e-135 492.0
14 TraesCS1B01G470300 chr1B 86.119 353 20 13 389 715 678487366 678487017 1.480000e-93 353.0
15 TraesCS1B01G470300 chr1B 83.912 317 21 11 389 679 678554904 678554592 3.300000e-70 276.0
16 TraesCS1B01G470300 chr1B 97.163 141 3 1 1 141 111108689 111108550 1.560000e-58 237.0
17 TraesCS1B01G470300 chr1B 86.636 217 7 2 763 976 641111605 641111802 1.570000e-53 220.0
18 TraesCS1B01G470300 chr1B 88.608 158 18 0 389 546 641110705 641110862 3.410000e-45 193.0
19 TraesCS1B01G470300 chr1B 90.000 130 8 3 593 717 641110987 641111116 2.680000e-36 163.0
20 TraesCS1B01G470300 chr1B 94.048 84 5 0 395 478 678633538 678633455 9.760000e-26 128.0
21 TraesCS1B01G470300 chr1B 86.842 114 10 1 608 716 678766116 678766003 4.540000e-24 122.0
22 TraesCS1B01G470300 chr1B 95.000 40 2 0 726 765 678765936 678765897 2.790000e-06 63.9
23 TraesCS1B01G470300 chr1A 92.115 2638 168 19 726 3350 584846507 584849117 0.000000e+00 3683.0
24 TraesCS1B01G470300 chr1A 90.152 792 73 4 1996 2785 584840212 584841000 0.000000e+00 1026.0
25 TraesCS1B01G470300 chr1A 82.667 300 18 15 389 657 584845790 584846086 5.590000e-58 235.0
26 TraesCS1B01G470300 chr1D 91.329 2664 169 29 726 3353 487274851 487277488 0.000000e+00 3583.0
27 TraesCS1B01G470300 chr1D 80.967 1261 221 13 1803 3058 487288555 487289801 0.000000e+00 981.0
28 TraesCS1B01G470300 chr1D 82.486 1102 180 9 1973 3068 487314939 487316033 0.000000e+00 953.0
29 TraesCS1B01G470300 chr1D 90.361 166 13 2 389 554 487274247 487274409 7.290000e-52 215.0
30 TraesCS1B01G470300 chr1D 91.270 126 6 1 593 713 487274575 487274700 2.070000e-37 167.0
31 TraesCS1B01G470300 chr6B 91.667 264 22 0 130 393 31858536 31858799 1.900000e-97 366.0
32 TraesCS1B01G470300 chr6B 91.603 262 22 0 130 391 42927764 42927503 2.460000e-96 363.0
33 TraesCS1B01G470300 chr6B 98.519 135 2 0 1 135 629566799 629566933 4.320000e-59 239.0
34 TraesCS1B01G470300 chr6B 86.792 106 9 4 1544 1645 239044845 239044949 2.730000e-21 113.0
35 TraesCS1B01G470300 chr3B 91.892 259 21 0 131 389 572683788 572684046 2.460000e-96 363.0
36 TraesCS1B01G470300 chr3B 91.288 264 21 2 130 393 756284730 756284469 3.180000e-95 359.0
37 TraesCS1B01G470300 chr3B 90.769 260 24 0 130 389 817797308 817797049 6.890000e-92 348.0
38 TraesCS1B01G470300 chr2B 90.530 264 25 0 130 393 46325611 46325348 1.910000e-92 350.0
39 TraesCS1B01G470300 chr2B 90.114 263 26 0 130 392 430241081 430241343 3.200000e-90 342.0
40 TraesCS1B01G470300 chr5D 90.734 259 24 0 130 388 420194093 420194351 2.480000e-91 346.0
41 TraesCS1B01G470300 chr5D 84.211 76 12 0 2987 3062 27321614 27321539 1.290000e-09 75.0
42 TraesCS1B01G470300 chr5B 90.458 262 25 0 130 391 248777321 248777060 2.480000e-91 346.0
43 TraesCS1B01G470300 chr5B 71.618 828 205 25 2250 3064 665939409 665940219 2.040000e-47 200.0
44 TraesCS1B01G470300 chr5B 84.524 84 13 0 2985 3068 64736072 64735989 2.140000e-12 84.2
45 TraesCS1B01G470300 chr7B 97.826 138 3 0 1 138 556102551 556102414 4.320000e-59 239.0
46 TraesCS1B01G470300 chr4B 98.519 135 2 0 1 135 339231964 339232098 4.320000e-59 239.0
47 TraesCS1B01G470300 chr4B 98.507 134 2 0 1 134 92496995 92496862 1.560000e-58 237.0
48 TraesCS1B01G470300 chr4B 98.507 134 2 0 1 134 317180673 317180806 1.560000e-58 237.0
49 TraesCS1B01G470300 chr4B 98.507 134 2 0 1 134 441515979 441515846 1.560000e-58 237.0
50 TraesCS1B01G470300 chr4B 95.804 143 6 0 1 143 554953640 554953782 7.230000e-57 231.0
51 TraesCS1B01G470300 chr4A 98.507 134 2 0 1 134 609370433 609370566 1.560000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G470300 chr1B 678604176 678607528 3352 True 6192.000000 6192 100.000000 1 3353 1 chr1B.!!$R2 3352
1 TraesCS1B01G470300 chr1B 641196816 641199200 2384 False 3079.000000 3079 90.192000 861 3219 1 chr1B.!!$F1 2358
2 TraesCS1B01G470300 chr1B 678311783 678313656 1873 False 2878.000000 2878 94.336000 1470 3353 1 chr1B.!!$F2 1883
3 TraesCS1B01G470300 chr1B 678484151 678487366 3215 True 2014.000000 3675 89.109000 389 3353 2 chr1B.!!$R5 2964
4 TraesCS1B01G470300 chr1B 678788771 678791225 2454 True 1852.500000 2595 93.921500 599 3353 2 chr1B.!!$R10 2754
5 TraesCS1B01G470300 chr1B 678551090 678554904 3814 True 1851.000000 3426 87.779500 389 3222 2 chr1B.!!$R6 2833
6 TraesCS1B01G470300 chr1B 678443111 678445538 2427 True 1440.000000 2183 91.301500 992 3353 2 chr1B.!!$R4 2361
7 TraesCS1B01G470300 chr1B 678737407 678739824 2417 True 1405.000000 2159 90.492500 992 3353 2 chr1B.!!$R7 2361
8 TraesCS1B01G470300 chr1B 678752209 678753305 1096 True 620.500000 749 93.095000 726 1891 2 chr1B.!!$R8 1165
9 TraesCS1B01G470300 chr1B 641110705 641112965 2260 False 535.250000 1565 89.143500 389 2298 4 chr1B.!!$F3 1909
10 TraesCS1B01G470300 chr1A 584845790 584849117 3327 False 1959.000000 3683 87.391000 389 3350 2 chr1A.!!$F2 2961
11 TraesCS1B01G470300 chr1A 584840212 584841000 788 False 1026.000000 1026 90.152000 1996 2785 1 chr1A.!!$F1 789
12 TraesCS1B01G470300 chr1D 487274247 487277488 3241 False 1321.666667 3583 90.986667 389 3353 3 chr1D.!!$F3 2964
13 TraesCS1B01G470300 chr1D 487288555 487289801 1246 False 981.000000 981 80.967000 1803 3058 1 chr1D.!!$F1 1255
14 TraesCS1B01G470300 chr1D 487314939 487316033 1094 False 953.000000 953 82.486000 1973 3068 1 chr1D.!!$F2 1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 279 0.033504 ATTAGCGCCGTCCTACATGG 59.966 55.0 2.29 0.0 37.1 3.66 F
387 388 0.233848 CGTGTGGGCGTTAGTGTTTC 59.766 55.0 0.00 0.0 0.0 2.78 F
1074 2814 0.250513 AGGTTGGTTCTCTGATCGGC 59.749 55.0 0.00 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 3148 0.382515 CTACCGCTCAGCAGACCTAC 59.617 60.000 0.00 0.0 0.0 3.18 R
1766 3748 2.044946 GTTTCAGATGCCCGGCCT 60.045 61.111 7.03 0.0 0.0 5.19 R
2627 4622 1.663695 CCTTCACTTCGTGTGGTTGT 58.336 50.000 10.35 0.0 46.2 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.954927 CCCGAAGCTGGGTAAGATTC 58.045 55.000 0.68 0.00 45.92 2.52
27 28 1.300481 GAAGCTGGGTAAGATTCGCC 58.700 55.000 0.00 0.00 41.19 5.54
28 29 0.462047 AAGCTGGGTAAGATTCGCCG 60.462 55.000 0.00 0.00 23.58 6.46
29 30 1.887707 GCTGGGTAAGATTCGCCGG 60.888 63.158 0.00 0.00 0.00 6.13
30 31 1.887707 CTGGGTAAGATTCGCCGGC 60.888 63.158 19.07 19.07 0.00 6.13
31 32 2.965462 GGGTAAGATTCGCCGGCG 60.965 66.667 42.13 42.13 41.35 6.46
32 33 2.202837 GGTAAGATTCGCCGGCGT 60.203 61.111 44.16 29.95 40.74 5.68
33 34 2.522638 GGTAAGATTCGCCGGCGTG 61.523 63.158 44.16 22.01 40.74 5.34
34 35 2.888534 TAAGATTCGCCGGCGTGC 60.889 61.111 44.16 32.69 40.74 5.34
35 36 3.650907 TAAGATTCGCCGGCGTGCA 62.651 57.895 44.16 30.42 40.74 4.57
36 37 2.916502 TAAGATTCGCCGGCGTGCAT 62.917 55.000 44.16 33.24 40.74 3.96
37 38 4.596180 GATTCGCCGGCGTGCATG 62.596 66.667 44.16 19.59 40.74 4.06
47 48 2.511373 CGTGCATGCCTTCGCCTA 60.511 61.111 16.68 0.00 0.00 3.93
48 49 2.106074 CGTGCATGCCTTCGCCTAA 61.106 57.895 16.68 0.00 0.00 2.69
49 50 1.439353 CGTGCATGCCTTCGCCTAAT 61.439 55.000 16.68 0.00 0.00 1.73
50 51 0.308993 GTGCATGCCTTCGCCTAATC 59.691 55.000 16.68 0.00 0.00 1.75
51 52 0.819259 TGCATGCCTTCGCCTAATCC 60.819 55.000 16.68 0.00 0.00 3.01
52 53 1.518903 GCATGCCTTCGCCTAATCCC 61.519 60.000 6.36 0.00 0.00 3.85
53 54 0.179020 CATGCCTTCGCCTAATCCCA 60.179 55.000 0.00 0.00 0.00 4.37
54 55 0.773644 ATGCCTTCGCCTAATCCCAT 59.226 50.000 0.00 0.00 0.00 4.00
55 56 0.550914 TGCCTTCGCCTAATCCCATT 59.449 50.000 0.00 0.00 0.00 3.16
56 57 1.064017 TGCCTTCGCCTAATCCCATTT 60.064 47.619 0.00 0.00 0.00 2.32
57 58 1.609072 GCCTTCGCCTAATCCCATTTC 59.391 52.381 0.00 0.00 0.00 2.17
58 59 2.230660 CCTTCGCCTAATCCCATTTCC 58.769 52.381 0.00 0.00 0.00 3.13
59 60 2.158608 CCTTCGCCTAATCCCATTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
60 61 2.638480 TCGCCTAATCCCATTTCCTG 57.362 50.000 0.00 0.00 0.00 3.86
61 62 1.142870 TCGCCTAATCCCATTTCCTGG 59.857 52.381 0.00 0.00 45.51 4.45
62 63 1.332195 GCCTAATCCCATTTCCTGGC 58.668 55.000 0.00 0.00 44.46 4.85
63 64 1.411501 GCCTAATCCCATTTCCTGGCA 60.412 52.381 0.00 0.00 44.46 4.92
64 65 2.310538 CCTAATCCCATTTCCTGGCAC 58.689 52.381 0.00 0.00 44.46 5.01
65 66 2.310538 CTAATCCCATTTCCTGGCACC 58.689 52.381 0.00 0.00 44.46 5.01
66 67 0.684153 AATCCCATTTCCTGGCACCG 60.684 55.000 0.00 0.00 44.46 4.94
67 68 2.572333 ATCCCATTTCCTGGCACCGG 62.572 60.000 0.00 0.00 44.46 5.28
68 69 3.451894 CCATTTCCTGGCACCGGC 61.452 66.667 0.00 0.00 38.47 6.13
69 70 3.814268 CATTTCCTGGCACCGGCG 61.814 66.667 0.00 0.00 42.47 6.46
70 71 4.028490 ATTTCCTGGCACCGGCGA 62.028 61.111 9.30 0.00 42.47 5.54
85 86 4.666728 CGACGTTCTACTCGCTCC 57.333 61.111 0.00 0.00 0.00 4.70
86 87 1.062206 CGACGTTCTACTCGCTCCC 59.938 63.158 0.00 0.00 0.00 4.30
87 88 1.642037 CGACGTTCTACTCGCTCCCA 61.642 60.000 0.00 0.00 0.00 4.37
88 89 0.179169 GACGTTCTACTCGCTCCCAC 60.179 60.000 0.00 0.00 0.00 4.61
89 90 1.139095 CGTTCTACTCGCTCCCACC 59.861 63.158 0.00 0.00 0.00 4.61
90 91 1.592400 CGTTCTACTCGCTCCCACCA 61.592 60.000 0.00 0.00 0.00 4.17
91 92 0.824759 GTTCTACTCGCTCCCACCAT 59.175 55.000 0.00 0.00 0.00 3.55
92 93 2.029623 GTTCTACTCGCTCCCACCATA 58.970 52.381 0.00 0.00 0.00 2.74
93 94 2.429610 GTTCTACTCGCTCCCACCATAA 59.570 50.000 0.00 0.00 0.00 1.90
94 95 2.958818 TCTACTCGCTCCCACCATAAT 58.041 47.619 0.00 0.00 0.00 1.28
95 96 4.108501 TCTACTCGCTCCCACCATAATA 57.891 45.455 0.00 0.00 0.00 0.98
96 97 4.476297 TCTACTCGCTCCCACCATAATAA 58.524 43.478 0.00 0.00 0.00 1.40
97 98 3.753294 ACTCGCTCCCACCATAATAAG 57.247 47.619 0.00 0.00 0.00 1.73
98 99 2.224305 ACTCGCTCCCACCATAATAAGC 60.224 50.000 0.00 0.00 0.00 3.09
99 100 1.071699 TCGCTCCCACCATAATAAGCC 59.928 52.381 0.00 0.00 0.00 4.35
100 101 1.202758 CGCTCCCACCATAATAAGCCA 60.203 52.381 0.00 0.00 0.00 4.75
101 102 2.553028 CGCTCCCACCATAATAAGCCAT 60.553 50.000 0.00 0.00 0.00 4.40
102 103 3.084786 GCTCCCACCATAATAAGCCATC 58.915 50.000 0.00 0.00 0.00 3.51
103 104 3.690460 CTCCCACCATAATAAGCCATCC 58.310 50.000 0.00 0.00 0.00 3.51
104 105 3.331889 CTCCCACCATAATAAGCCATCCT 59.668 47.826 0.00 0.00 0.00 3.24
105 106 3.726859 TCCCACCATAATAAGCCATCCTT 59.273 43.478 0.00 0.00 37.57 3.36
106 107 4.169856 TCCCACCATAATAAGCCATCCTTT 59.830 41.667 0.00 0.00 34.95 3.11
107 108 4.281688 CCCACCATAATAAGCCATCCTTTG 59.718 45.833 0.00 0.00 34.95 2.77
118 119 1.267806 CCATCCTTTGGCATATGTCGC 59.732 52.381 2.28 0.00 39.09 5.19
119 120 1.948834 CATCCTTTGGCATATGTCGCA 59.051 47.619 2.28 0.00 0.00 5.10
120 121 1.378531 TCCTTTGGCATATGTCGCAC 58.621 50.000 2.28 0.00 0.00 5.34
121 122 0.381801 CCTTTGGCATATGTCGCACC 59.618 55.000 2.28 0.00 0.00 5.01
122 123 0.381801 CTTTGGCATATGTCGCACCC 59.618 55.000 2.28 0.00 0.00 4.61
123 124 0.322906 TTTGGCATATGTCGCACCCA 60.323 50.000 2.28 0.00 0.00 4.51
124 125 0.322906 TTGGCATATGTCGCACCCAA 60.323 50.000 2.28 4.61 0.00 4.12
125 126 1.029408 TGGCATATGTCGCACCCAAC 61.029 55.000 2.28 0.00 0.00 3.77
126 127 1.724582 GGCATATGTCGCACCCAACC 61.725 60.000 4.29 0.00 0.00 3.77
127 128 1.724582 GCATATGTCGCACCCAACCC 61.725 60.000 4.29 0.00 0.00 4.11
128 129 1.101049 CATATGTCGCACCCAACCCC 61.101 60.000 0.00 0.00 0.00 4.95
129 130 2.279037 ATATGTCGCACCCAACCCCC 62.279 60.000 0.00 0.00 0.00 5.40
134 135 4.589675 GCACCCAACCCCCGACAA 62.590 66.667 0.00 0.00 0.00 3.18
135 136 2.282180 CACCCAACCCCCGACAAG 60.282 66.667 0.00 0.00 0.00 3.16
136 137 2.775219 ACCCAACCCCCGACAAGT 60.775 61.111 0.00 0.00 0.00 3.16
137 138 1.461849 ACCCAACCCCCGACAAGTA 60.462 57.895 0.00 0.00 0.00 2.24
138 139 1.298667 CCCAACCCCCGACAAGTAG 59.701 63.158 0.00 0.00 0.00 2.57
139 140 1.486145 CCCAACCCCCGACAAGTAGT 61.486 60.000 0.00 0.00 0.00 2.73
140 141 0.399075 CCAACCCCCGACAAGTAGTT 59.601 55.000 0.00 0.00 0.00 2.24
141 142 1.609841 CCAACCCCCGACAAGTAGTTC 60.610 57.143 0.00 0.00 0.00 3.01
142 143 0.319405 AACCCCCGACAAGTAGTTCG 59.681 55.000 0.00 0.00 0.00 3.95
143 144 0.829182 ACCCCCGACAAGTAGTTCGT 60.829 55.000 0.00 0.00 0.00 3.85
144 145 0.108945 CCCCCGACAAGTAGTTCGTC 60.109 60.000 0.00 3.95 0.00 4.20
145 146 0.108945 CCCCGACAAGTAGTTCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
146 147 0.599558 CCCGACAAGTAGTTCGTCCA 59.400 55.000 0.00 0.00 0.00 4.02
147 148 1.668047 CCCGACAAGTAGTTCGTCCAC 60.668 57.143 0.00 0.00 0.00 4.02
148 149 1.001048 CCGACAAGTAGTTCGTCCACA 60.001 52.381 0.00 0.00 0.00 4.17
149 150 2.049228 CGACAAGTAGTTCGTCCACAC 58.951 52.381 7.07 0.00 0.00 3.82
151 152 0.782384 CAAGTAGTTCGTCCACACGC 59.218 55.000 0.00 0.00 46.28 5.34
152 153 0.662374 AAGTAGTTCGTCCACACGCG 60.662 55.000 3.53 3.53 46.28 6.01
153 154 2.429571 TAGTTCGTCCACACGCGC 60.430 61.111 5.73 0.00 46.28 6.86
154 155 3.196913 TAGTTCGTCCACACGCGCA 62.197 57.895 5.73 0.00 46.28 6.09
155 156 2.480853 TAGTTCGTCCACACGCGCAT 62.481 55.000 5.73 0.00 46.28 4.73
156 157 3.410516 TTCGTCCACACGCGCATG 61.411 61.111 5.73 4.48 46.28 4.06
157 158 3.850095 TTCGTCCACACGCGCATGA 62.850 57.895 11.87 0.00 46.28 3.07
158 159 3.410516 CGTCCACACGCGCATGAA 61.411 61.111 11.87 0.00 39.69 2.57
159 160 2.173382 GTCCACACGCGCATGAAC 59.827 61.111 11.87 1.17 0.00 3.18
160 161 2.030412 TCCACACGCGCATGAACT 59.970 55.556 11.87 0.00 0.00 3.01
161 162 1.011968 GTCCACACGCGCATGAACTA 61.012 55.000 11.87 0.00 0.00 2.24
162 163 0.735978 TCCACACGCGCATGAACTAG 60.736 55.000 11.87 0.00 0.00 2.57
163 164 1.695893 CCACACGCGCATGAACTAGG 61.696 60.000 11.87 0.00 0.00 3.02
164 165 1.014044 CACACGCGCATGAACTAGGT 61.014 55.000 11.87 0.00 0.00 3.08
165 166 1.014044 ACACGCGCATGAACTAGGTG 61.014 55.000 11.87 7.66 0.00 4.00
166 167 1.447838 ACGCGCATGAACTAGGTGG 60.448 57.895 5.73 0.00 0.00 4.61
167 168 2.813179 CGCGCATGAACTAGGTGGC 61.813 63.158 8.75 0.00 0.00 5.01
168 169 1.450312 GCGCATGAACTAGGTGGCT 60.450 57.895 0.30 0.00 0.00 4.75
169 170 0.179084 GCGCATGAACTAGGTGGCTA 60.179 55.000 0.30 0.00 0.00 3.93
170 171 1.858091 CGCATGAACTAGGTGGCTAG 58.142 55.000 0.00 0.00 0.00 3.42
171 172 1.587547 GCATGAACTAGGTGGCTAGC 58.412 55.000 6.04 6.04 0.00 3.42
172 173 1.139853 GCATGAACTAGGTGGCTAGCT 59.860 52.381 15.72 7.07 38.41 3.32
173 174 2.831333 CATGAACTAGGTGGCTAGCTG 58.169 52.381 15.72 4.74 35.90 4.24
174 175 1.938585 TGAACTAGGTGGCTAGCTGT 58.061 50.000 15.72 5.37 35.90 4.40
175 176 1.550524 TGAACTAGGTGGCTAGCTGTG 59.449 52.381 15.72 7.25 35.90 3.66
176 177 1.550976 GAACTAGGTGGCTAGCTGTGT 59.449 52.381 15.72 7.88 35.90 3.72
177 178 0.898320 ACTAGGTGGCTAGCTGTGTG 59.102 55.000 15.72 3.86 35.90 3.82
178 179 0.176680 CTAGGTGGCTAGCTGTGTGG 59.823 60.000 15.72 0.00 35.90 4.17
179 180 1.264749 TAGGTGGCTAGCTGTGTGGG 61.265 60.000 15.72 0.00 35.90 4.61
180 181 2.747855 GTGGCTAGCTGTGTGGGC 60.748 66.667 15.72 0.00 0.00 5.36
181 182 3.248418 TGGCTAGCTGTGTGGGCA 61.248 61.111 15.72 0.00 0.00 5.36
182 183 2.437359 GGCTAGCTGTGTGGGCAG 60.437 66.667 15.72 0.00 39.37 4.85
183 184 2.665000 GCTAGCTGTGTGGGCAGA 59.335 61.111 7.70 0.00 38.70 4.26
184 185 1.003355 GCTAGCTGTGTGGGCAGAA 60.003 57.895 7.70 0.00 38.70 3.02
185 186 0.606401 GCTAGCTGTGTGGGCAGAAA 60.606 55.000 7.70 0.00 38.70 2.52
186 187 1.160137 CTAGCTGTGTGGGCAGAAAC 58.840 55.000 0.00 0.00 38.70 2.78
187 188 0.764890 TAGCTGTGTGGGCAGAAACT 59.235 50.000 0.00 0.00 38.70 2.66
188 189 0.764890 AGCTGTGTGGGCAGAAACTA 59.235 50.000 0.00 0.00 38.70 2.24
189 190 1.160137 GCTGTGTGGGCAGAAACTAG 58.840 55.000 0.00 0.00 38.70 2.57
190 191 1.543429 GCTGTGTGGGCAGAAACTAGT 60.543 52.381 0.00 0.00 38.70 2.57
191 192 2.851195 CTGTGTGGGCAGAAACTAGTT 58.149 47.619 1.12 1.12 38.70 2.24
192 193 2.808543 CTGTGTGGGCAGAAACTAGTTC 59.191 50.000 8.95 2.91 38.70 3.01
193 194 1.798813 GTGTGGGCAGAAACTAGTTCG 59.201 52.381 8.95 2.01 41.52 3.95
194 195 0.796927 GTGGGCAGAAACTAGTTCGC 59.203 55.000 8.95 11.76 41.52 4.70
195 196 0.321298 TGGGCAGAAACTAGTTCGCC 60.321 55.000 24.98 24.98 46.43 5.54
196 197 2.467962 GGCAGAAACTAGTTCGCCC 58.532 57.895 23.55 12.97 43.88 6.13
197 198 0.321298 GGCAGAAACTAGTTCGCCCA 60.321 55.000 23.55 0.00 43.88 5.36
198 199 0.796927 GCAGAAACTAGTTCGCCCAC 59.203 55.000 8.95 0.00 41.52 4.61
199 200 1.876416 GCAGAAACTAGTTCGCCCACA 60.876 52.381 8.95 0.00 41.52 4.17
200 201 1.798813 CAGAAACTAGTTCGCCCACAC 59.201 52.381 8.95 0.00 41.52 3.82
201 202 1.414919 AGAAACTAGTTCGCCCACACA 59.585 47.619 8.95 0.00 41.52 3.72
202 203 2.158871 AGAAACTAGTTCGCCCACACAA 60.159 45.455 8.95 0.00 41.52 3.33
203 204 1.589803 AACTAGTTCGCCCACACAAC 58.410 50.000 1.12 0.00 0.00 3.32
204 205 0.599204 ACTAGTTCGCCCACACAACG 60.599 55.000 0.00 0.00 0.00 4.10
205 206 1.897398 CTAGTTCGCCCACACAACGC 61.897 60.000 0.00 0.00 0.00 4.84
206 207 2.646117 TAGTTCGCCCACACAACGCA 62.646 55.000 0.00 0.00 0.00 5.24
207 208 3.276091 TTCGCCCACACAACGCAG 61.276 61.111 0.00 0.00 0.00 5.18
210 211 4.332637 GCCCACACAACGCAGCTG 62.333 66.667 10.11 10.11 0.00 4.24
211 212 3.663176 CCCACACAACGCAGCTGG 61.663 66.667 17.12 8.27 0.00 4.85
212 213 4.332637 CCACACAACGCAGCTGGC 62.333 66.667 17.12 6.97 39.90 4.85
213 214 3.585020 CACACAACGCAGCTGGCA 61.585 61.111 17.12 0.00 45.17 4.92
214 215 3.282157 ACACAACGCAGCTGGCAG 61.282 61.111 17.12 10.94 45.17 4.85
215 216 2.974148 CACAACGCAGCTGGCAGA 60.974 61.111 20.86 0.00 45.17 4.26
216 217 2.974698 ACAACGCAGCTGGCAGAC 60.975 61.111 20.86 9.84 45.17 3.51
217 218 2.974148 CAACGCAGCTGGCAGACA 60.974 61.111 20.86 0.00 45.17 3.41
235 236 2.549282 GCGTGGTGCTAACGTGTG 59.451 61.111 0.00 0.00 42.93 3.82
236 237 2.950172 GCGTGGTGCTAACGTGTGG 61.950 63.158 0.00 0.00 42.93 4.17
237 238 2.314647 CGTGGTGCTAACGTGTGGG 61.315 63.158 0.00 0.00 36.31 4.61
238 239 2.281208 TGGTGCTAACGTGTGGGC 60.281 61.111 0.00 0.00 0.00 5.36
239 240 2.281208 GGTGCTAACGTGTGGGCA 60.281 61.111 0.00 0.00 0.00 5.36
240 241 1.894756 GGTGCTAACGTGTGGGCAA 60.895 57.895 6.58 0.00 36.43 4.52
241 242 1.448922 GGTGCTAACGTGTGGGCAAA 61.449 55.000 6.58 0.00 36.43 3.68
242 243 0.317519 GTGCTAACGTGTGGGCAAAC 60.318 55.000 6.58 0.00 36.43 2.93
243 244 0.464735 TGCTAACGTGTGGGCAAACT 60.465 50.000 0.00 0.00 0.00 2.66
244 245 0.237498 GCTAACGTGTGGGCAAACTC 59.763 55.000 0.00 0.00 0.00 3.01
245 246 1.878953 CTAACGTGTGGGCAAACTCT 58.121 50.000 0.00 0.00 0.00 3.24
246 247 1.531149 CTAACGTGTGGGCAAACTCTG 59.469 52.381 0.00 0.00 0.00 3.35
255 256 3.431055 CAAACTCTGCAACGCCCA 58.569 55.556 0.00 0.00 0.00 5.36
256 257 1.283793 CAAACTCTGCAACGCCCAG 59.716 57.895 0.00 0.00 0.00 4.45
257 258 1.148273 AAACTCTGCAACGCCCAGA 59.852 52.632 0.00 1.16 37.71 3.86
258 259 1.166531 AAACTCTGCAACGCCCAGAC 61.167 55.000 0.00 0.00 35.60 3.51
259 260 2.031012 CTCTGCAACGCCCAGACA 59.969 61.111 0.00 0.00 35.60 3.41
260 261 1.376424 CTCTGCAACGCCCAGACAT 60.376 57.895 0.00 0.00 35.60 3.06
261 262 0.957395 CTCTGCAACGCCCAGACATT 60.957 55.000 0.00 0.00 35.60 2.71
262 263 0.323302 TCTGCAACGCCCAGACATTA 59.677 50.000 0.00 0.00 34.59 1.90
263 264 0.729116 CTGCAACGCCCAGACATTAG 59.271 55.000 0.00 0.00 32.03 1.73
264 265 1.305219 TGCAACGCCCAGACATTAGC 61.305 55.000 0.00 0.00 0.00 3.09
267 268 3.272334 CGCCCAGACATTAGCGCC 61.272 66.667 2.29 0.00 42.31 6.53
268 269 3.272334 GCCCAGACATTAGCGCCG 61.272 66.667 2.29 0.00 0.00 6.46
269 270 2.186903 CCCAGACATTAGCGCCGT 59.813 61.111 2.29 0.00 0.00 5.68
270 271 1.883084 CCCAGACATTAGCGCCGTC 60.883 63.158 2.29 6.25 0.00 4.79
271 272 1.883084 CCAGACATTAGCGCCGTCC 60.883 63.158 2.29 0.00 0.00 4.79
272 273 1.141881 CAGACATTAGCGCCGTCCT 59.858 57.895 2.29 0.00 0.00 3.85
273 274 0.384309 CAGACATTAGCGCCGTCCTA 59.616 55.000 2.29 0.00 0.00 2.94
274 275 0.384669 AGACATTAGCGCCGTCCTAC 59.615 55.000 2.29 0.00 0.00 3.18
275 276 0.101759 GACATTAGCGCCGTCCTACA 59.898 55.000 2.29 0.00 0.00 2.74
276 277 0.750850 ACATTAGCGCCGTCCTACAT 59.249 50.000 2.29 0.00 0.00 2.29
277 278 1.139989 CATTAGCGCCGTCCTACATG 58.860 55.000 2.29 0.00 0.00 3.21
278 279 0.033504 ATTAGCGCCGTCCTACATGG 59.966 55.000 2.29 0.00 37.10 3.66
296 297 3.902881 TGGCACACAAAATCAACCTTT 57.097 38.095 0.00 0.00 0.00 3.11
297 298 4.213564 TGGCACACAAAATCAACCTTTT 57.786 36.364 0.00 0.00 0.00 2.27
298 299 4.187694 TGGCACACAAAATCAACCTTTTC 58.812 39.130 0.00 0.00 0.00 2.29
299 300 4.187694 GGCACACAAAATCAACCTTTTCA 58.812 39.130 0.00 0.00 0.00 2.69
300 301 4.815846 GGCACACAAAATCAACCTTTTCAT 59.184 37.500 0.00 0.00 0.00 2.57
301 302 5.277442 GGCACACAAAATCAACCTTTTCATG 60.277 40.000 0.00 0.00 0.00 3.07
302 303 5.740406 CACACAAAATCAACCTTTTCATGC 58.260 37.500 0.00 0.00 0.00 4.06
303 304 4.815846 ACACAAAATCAACCTTTTCATGCC 59.184 37.500 0.00 0.00 0.00 4.40
304 305 4.815308 CACAAAATCAACCTTTTCATGCCA 59.185 37.500 0.00 0.00 0.00 4.92
305 306 5.296283 CACAAAATCAACCTTTTCATGCCAA 59.704 36.000 0.00 0.00 0.00 4.52
306 307 5.528320 ACAAAATCAACCTTTTCATGCCAAG 59.472 36.000 0.00 0.00 0.00 3.61
307 308 5.549742 AAATCAACCTTTTCATGCCAAGA 57.450 34.783 5.51 0.00 0.00 3.02
308 309 5.750352 AATCAACCTTTTCATGCCAAGAT 57.250 34.783 5.51 0.00 0.00 2.40
309 310 5.750352 ATCAACCTTTTCATGCCAAGATT 57.250 34.783 5.51 0.00 0.00 2.40
310 311 5.138125 TCAACCTTTTCATGCCAAGATTC 57.862 39.130 5.51 0.00 0.00 2.52
311 312 3.855689 ACCTTTTCATGCCAAGATTCG 57.144 42.857 5.51 0.00 0.00 3.34
312 313 3.157087 ACCTTTTCATGCCAAGATTCGT 58.843 40.909 5.51 0.00 0.00 3.85
313 314 3.057315 ACCTTTTCATGCCAAGATTCGTG 60.057 43.478 5.51 0.00 0.00 4.35
314 315 2.634982 TTTCATGCCAAGATTCGTGC 57.365 45.000 0.00 0.00 0.00 5.34
315 316 1.532523 TTCATGCCAAGATTCGTGCA 58.467 45.000 0.00 0.00 38.23 4.57
316 317 1.532523 TCATGCCAAGATTCGTGCAA 58.467 45.000 0.00 0.00 37.27 4.08
317 318 1.885233 TCATGCCAAGATTCGTGCAAA 59.115 42.857 0.00 0.00 37.27 3.68
318 319 2.295629 TCATGCCAAGATTCGTGCAAAA 59.704 40.909 0.00 0.00 37.27 2.44
319 320 2.420628 TGCCAAGATTCGTGCAAAAG 57.579 45.000 0.00 0.00 0.00 2.27
320 321 1.000385 TGCCAAGATTCGTGCAAAAGG 60.000 47.619 0.00 0.00 0.00 3.11
321 322 1.701704 CCAAGATTCGTGCAAAAGGC 58.298 50.000 0.00 0.00 45.13 4.35
332 333 1.632422 GCAAAAGGCATTGGATGACG 58.368 50.000 5.39 0.00 45.18 4.35
333 334 1.202114 GCAAAAGGCATTGGATGACGA 59.798 47.619 0.00 0.00 45.18 4.20
334 335 2.159198 GCAAAAGGCATTGGATGACGAT 60.159 45.455 0.00 0.00 45.18 3.73
335 336 3.699067 CAAAAGGCATTGGATGACGATC 58.301 45.455 0.00 0.00 45.18 3.69
336 337 2.715749 AAGGCATTGGATGACGATCA 57.284 45.000 0.00 0.00 45.18 2.92
337 338 2.715749 AGGCATTGGATGACGATCAA 57.284 45.000 0.00 0.00 45.18 2.57
338 339 2.569059 AGGCATTGGATGACGATCAAG 58.431 47.619 0.00 0.00 45.18 3.02
339 340 1.605710 GGCATTGGATGACGATCAAGG 59.394 52.381 0.00 0.00 0.00 3.61
340 341 1.002033 GCATTGGATGACGATCAAGGC 60.002 52.381 0.00 0.00 0.00 4.35
341 342 1.262417 CATTGGATGACGATCAAGGCG 59.738 52.381 0.00 0.00 0.00 5.52
342 343 0.249120 TTGGATGACGATCAAGGCGT 59.751 50.000 0.00 0.00 45.79 5.68
343 344 0.460109 TGGATGACGATCAAGGCGTG 60.460 55.000 0.00 0.00 42.77 5.34
344 345 0.460284 GGATGACGATCAAGGCGTGT 60.460 55.000 0.00 0.00 42.77 4.49
345 346 0.647410 GATGACGATCAAGGCGTGTG 59.353 55.000 0.00 0.00 42.77 3.82
346 347 0.740868 ATGACGATCAAGGCGTGTGG 60.741 55.000 0.00 0.00 42.77 4.17
347 348 2.047274 ACGATCAAGGCGTGTGGG 60.047 61.111 0.00 0.00 40.94 4.61
348 349 3.499737 CGATCAAGGCGTGTGGGC 61.500 66.667 0.00 0.00 42.69 5.36
357 358 4.619227 CGTGTGGGCGAGTTGGGT 62.619 66.667 0.00 0.00 0.00 4.51
358 359 2.745037 GTGTGGGCGAGTTGGGTA 59.255 61.111 0.00 0.00 0.00 3.69
359 360 1.071814 GTGTGGGCGAGTTGGGTAA 59.928 57.895 0.00 0.00 0.00 2.85
360 361 0.322187 GTGTGGGCGAGTTGGGTAAT 60.322 55.000 0.00 0.00 0.00 1.89
361 362 0.322098 TGTGGGCGAGTTGGGTAATG 60.322 55.000 0.00 0.00 0.00 1.90
362 363 1.377987 TGGGCGAGTTGGGTAATGC 60.378 57.895 0.00 0.00 0.00 3.56
363 364 2.119029 GGGCGAGTTGGGTAATGCC 61.119 63.158 0.00 0.00 41.72 4.40
372 373 4.390048 GGTAATGCCCACACGTGT 57.610 55.556 17.22 17.22 0.00 4.49
373 374 1.873165 GGTAATGCCCACACGTGTG 59.127 57.895 36.13 36.13 45.23 3.82
381 382 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
382 383 1.593209 CACACGTGTGGGCGTTAGT 60.593 57.895 35.65 1.12 43.83 2.24
383 384 1.593209 ACACGTGTGGGCGTTAGTG 60.593 57.895 22.71 0.00 43.83 2.74
384 385 1.593209 CACGTGTGGGCGTTAGTGT 60.593 57.895 7.58 0.00 43.83 3.55
385 386 1.144496 ACGTGTGGGCGTTAGTGTT 59.856 52.632 0.00 0.00 43.04 3.32
386 387 0.462403 ACGTGTGGGCGTTAGTGTTT 60.462 50.000 0.00 0.00 43.04 2.83
387 388 0.233848 CGTGTGGGCGTTAGTGTTTC 59.766 55.000 0.00 0.00 0.00 2.78
443 452 2.480759 GCTGCATCCTAGGCATTTTGTG 60.481 50.000 2.96 0.00 41.06 3.33
445 454 3.164268 TGCATCCTAGGCATTTTGTGTT 58.836 40.909 2.96 0.00 36.11 3.32
457 473 6.814146 AGGCATTTTGTGTTTTCTTTTCGTTA 59.186 30.769 0.00 0.00 0.00 3.18
513 529 6.183360 GCTAAACGCTACATACCTGTCAATTT 60.183 38.462 0.00 0.00 36.79 1.82
557 615 9.668497 AAAAAGAAGATGGATAACACCTAGTAC 57.332 33.333 0.00 0.00 0.00 2.73
841 2569 4.772624 AGGACTGAGCATAGAGTTGTTGTA 59.227 41.667 0.00 0.00 0.00 2.41
842 2570 5.246203 AGGACTGAGCATAGAGTTGTTGTAA 59.754 40.000 0.00 0.00 0.00 2.41
843 2571 6.070538 AGGACTGAGCATAGAGTTGTTGTAAT 60.071 38.462 0.00 0.00 0.00 1.89
844 2572 6.256757 GGACTGAGCATAGAGTTGTTGTAATC 59.743 42.308 0.00 0.00 0.00 1.75
845 2573 6.701340 ACTGAGCATAGAGTTGTTGTAATCA 58.299 36.000 0.00 0.00 0.00 2.57
846 2574 7.161404 ACTGAGCATAGAGTTGTTGTAATCAA 58.839 34.615 0.00 0.00 0.00 2.57
847 2575 7.661437 ACTGAGCATAGAGTTGTTGTAATCAAA 59.339 33.333 0.00 0.00 35.20 2.69
848 2576 7.806690 TGAGCATAGAGTTGTTGTAATCAAAC 58.193 34.615 0.00 0.00 35.20 2.93
849 2577 7.094805 TGAGCATAGAGTTGTTGTAATCAAACC 60.095 37.037 0.00 0.00 35.20 3.27
850 2578 6.942576 AGCATAGAGTTGTTGTAATCAAACCT 59.057 34.615 0.00 0.00 35.20 3.50
851 2579 7.119846 AGCATAGAGTTGTTGTAATCAAACCTC 59.880 37.037 0.00 0.00 35.20 3.85
852 2580 5.924475 AGAGTTGTTGTAATCAAACCTCG 57.076 39.130 0.00 0.00 35.20 4.63
853 2581 4.213482 AGAGTTGTTGTAATCAAACCTCGC 59.787 41.667 0.00 0.00 35.20 5.03
854 2582 3.252458 AGTTGTTGTAATCAAACCTCGCC 59.748 43.478 0.00 0.00 35.20 5.54
855 2583 2.852449 TGTTGTAATCAAACCTCGCCA 58.148 42.857 0.00 0.00 35.20 5.69
856 2584 3.417101 TGTTGTAATCAAACCTCGCCAT 58.583 40.909 0.00 0.00 35.20 4.40
857 2585 3.438781 TGTTGTAATCAAACCTCGCCATC 59.561 43.478 0.00 0.00 35.20 3.51
933 2673 1.061411 CATCACGCACCTCGCAATG 59.939 57.895 0.00 0.00 42.60 2.82
1074 2814 0.250513 AGGTTGGTTCTCTGATCGGC 59.749 55.000 0.00 0.00 0.00 5.54
1084 2824 0.751643 TCTGATCGGCGGTCAGATCA 60.752 55.000 40.37 24.38 45.19 2.92
1141 2881 0.747255 GAAGATGGCGCTGGAGTCTA 59.253 55.000 7.64 0.00 0.00 2.59
1382 3152 6.785191 TCTTTTTGAGAAACAAGTGCTGTAG 58.215 36.000 0.00 0.00 37.23 2.74
1494 3291 6.976088 TGAGCTATTGAATCTGCTAGTAGAC 58.024 40.000 13.15 2.16 35.76 2.59
1511 3308 5.625150 AGTAGACTGTTTGGCTTGATCTTT 58.375 37.500 0.00 0.00 34.56 2.52
1687 3667 6.072112 TCTTTACAACACTTGGAAATCTGC 57.928 37.500 0.00 0.00 42.28 4.26
1751 3733 5.939883 TGGATGAACTAGACATGGTTTTGAG 59.060 40.000 10.69 0.00 29.00 3.02
1795 3779 3.817647 GCATCTGAAACATCTCCATACCC 59.182 47.826 0.00 0.00 0.00 3.69
1821 3808 5.591643 TTTTAGCTCAAGTTCTTAGCACG 57.408 39.130 0.00 0.00 38.75 5.34
1907 3898 7.961326 AGGATGTGCCTCTTAATGTTTTAAT 57.039 32.000 0.00 0.00 46.97 1.40
2127 4122 6.118170 CCTGAAGGTCATAACAGATCAACAT 58.882 40.000 0.00 0.00 32.90 2.71
2466 4461 9.474313 ACTATCAGAGAAAGATAAAGAGAGTGT 57.526 33.333 0.00 0.00 0.00 3.55
2581 4576 6.016777 ACAACATGTCTCATTTGGAAGAACTC 60.017 38.462 0.00 0.00 0.00 3.01
2614 4609 6.723977 TGTTAAAAATTGGGGAGAGCAGTAAT 59.276 34.615 0.00 0.00 0.00 1.89
2627 4622 6.821665 GGAGAGCAGTAATGTGGTTGTTATAA 59.178 38.462 0.00 0.00 0.00 0.98
2715 4711 3.819368 TGACTGATGACATGTGTTGGTT 58.181 40.909 1.15 0.00 0.00 3.67
2752 4748 5.033589 AGAGTGCATTTGAATCTAGAGGG 57.966 43.478 0.00 0.00 0.00 4.30
2780 4776 7.290014 ACAAAGAACAATTGGAAGAAATAGGGT 59.710 33.333 10.83 0.00 32.02 4.34
3086 5083 2.245438 CTCTTCCTGGGAACTCGGCC 62.245 65.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.571919 CGAATCTTACCCAGCTTCGG 58.428 55.000 0.92 0.00 44.13 4.30
8 9 1.300481 GGCGAATCTTACCCAGCTTC 58.700 55.000 0.00 0.00 0.00 3.86
9 10 0.462047 CGGCGAATCTTACCCAGCTT 60.462 55.000 0.00 0.00 0.00 3.74
10 11 1.144057 CGGCGAATCTTACCCAGCT 59.856 57.895 0.00 0.00 0.00 4.24
11 12 1.887707 CCGGCGAATCTTACCCAGC 60.888 63.158 9.30 0.00 0.00 4.85
12 13 1.887707 GCCGGCGAATCTTACCCAG 60.888 63.158 12.58 0.00 0.00 4.45
13 14 2.188469 GCCGGCGAATCTTACCCA 59.812 61.111 12.58 0.00 0.00 4.51
14 15 2.965462 CGCCGGCGAATCTTACCC 60.965 66.667 44.86 0.00 42.83 3.69
38 39 2.158608 AGGAAATGGGATTAGGCGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
39 40 2.880890 CAGGAAATGGGATTAGGCGAAG 59.119 50.000 0.00 0.00 0.00 3.79
40 41 2.422803 CCAGGAAATGGGATTAGGCGAA 60.423 50.000 0.00 0.00 46.36 4.70
41 42 1.142870 CCAGGAAATGGGATTAGGCGA 59.857 52.381 0.00 0.00 46.36 5.54
42 43 1.609208 CCAGGAAATGGGATTAGGCG 58.391 55.000 0.00 0.00 46.36 5.52
52 53 3.814268 CGCCGGTGCCAGGAAATG 61.814 66.667 0.00 0.00 0.00 2.32
53 54 4.028490 TCGCCGGTGCCAGGAAAT 62.028 61.111 11.05 0.00 0.00 2.17
60 61 4.424566 TAGAACGTCGCCGGTGCC 62.425 66.667 11.05 0.00 38.78 5.01
61 62 3.177249 GTAGAACGTCGCCGGTGC 61.177 66.667 11.05 4.65 38.78 5.01
62 63 1.513586 GAGTAGAACGTCGCCGGTG 60.514 63.158 9.28 9.28 38.78 4.94
63 64 2.873288 GAGTAGAACGTCGCCGGT 59.127 61.111 1.90 0.00 38.78 5.28
64 65 2.277120 CGAGTAGAACGTCGCCGG 60.277 66.667 0.00 0.00 38.78 6.13
68 69 1.062206 GGGAGCGAGTAGAACGTCG 59.938 63.158 0.00 0.00 39.25 5.12
69 70 0.179169 GTGGGAGCGAGTAGAACGTC 60.179 60.000 0.00 0.00 0.00 4.34
70 71 1.593296 GGTGGGAGCGAGTAGAACGT 61.593 60.000 0.00 0.00 0.00 3.99
71 72 1.139095 GGTGGGAGCGAGTAGAACG 59.861 63.158 0.00 0.00 0.00 3.95
72 73 0.824759 ATGGTGGGAGCGAGTAGAAC 59.175 55.000 0.00 0.00 0.00 3.01
73 74 2.447408 TATGGTGGGAGCGAGTAGAA 57.553 50.000 0.00 0.00 0.00 2.10
74 75 2.447408 TTATGGTGGGAGCGAGTAGA 57.553 50.000 0.00 0.00 0.00 2.59
75 76 4.810790 CTTATTATGGTGGGAGCGAGTAG 58.189 47.826 0.00 0.00 0.00 2.57
76 77 3.006537 GCTTATTATGGTGGGAGCGAGTA 59.993 47.826 0.00 0.00 0.00 2.59
77 78 2.224305 GCTTATTATGGTGGGAGCGAGT 60.224 50.000 0.00 0.00 0.00 4.18
78 79 2.417719 GCTTATTATGGTGGGAGCGAG 58.582 52.381 0.00 0.00 0.00 5.03
79 80 1.071699 GGCTTATTATGGTGGGAGCGA 59.928 52.381 0.00 0.00 0.00 4.93
80 81 1.202758 TGGCTTATTATGGTGGGAGCG 60.203 52.381 0.00 0.00 0.00 5.03
81 82 2.656947 TGGCTTATTATGGTGGGAGC 57.343 50.000 0.00 0.00 0.00 4.70
82 83 3.331889 AGGATGGCTTATTATGGTGGGAG 59.668 47.826 0.00 0.00 0.00 4.30
83 84 3.335748 AGGATGGCTTATTATGGTGGGA 58.664 45.455 0.00 0.00 0.00 4.37
84 85 3.814504 AGGATGGCTTATTATGGTGGG 57.185 47.619 0.00 0.00 0.00 4.61
85 86 4.281688 CCAAAGGATGGCTTATTATGGTGG 59.718 45.833 0.00 0.00 43.80 4.61
86 87 5.458041 CCAAAGGATGGCTTATTATGGTG 57.542 43.478 0.00 0.00 43.80 4.17
99 100 1.948834 TGCGACATATGCCAAAGGATG 59.051 47.619 1.58 0.00 0.00 3.51
100 101 1.949525 GTGCGACATATGCCAAAGGAT 59.050 47.619 1.58 0.00 0.00 3.24
101 102 1.378531 GTGCGACATATGCCAAAGGA 58.621 50.000 1.58 0.00 0.00 3.36
102 103 0.381801 GGTGCGACATATGCCAAAGG 59.618 55.000 1.58 0.00 0.00 3.11
103 104 0.381801 GGGTGCGACATATGCCAAAG 59.618 55.000 1.58 0.00 0.00 2.77
104 105 0.322906 TGGGTGCGACATATGCCAAA 60.323 50.000 1.58 0.00 0.00 3.28
105 106 0.322906 TTGGGTGCGACATATGCCAA 60.323 50.000 1.58 4.43 0.00 4.52
106 107 1.029408 GTTGGGTGCGACATATGCCA 61.029 55.000 1.58 0.00 0.00 4.92
107 108 1.724582 GGTTGGGTGCGACATATGCC 61.725 60.000 1.58 0.00 0.00 4.40
108 109 1.724582 GGGTTGGGTGCGACATATGC 61.725 60.000 1.58 0.00 0.00 3.14
109 110 1.101049 GGGGTTGGGTGCGACATATG 61.101 60.000 0.00 0.00 0.00 1.78
110 111 1.226262 GGGGTTGGGTGCGACATAT 59.774 57.895 0.00 0.00 0.00 1.78
111 112 2.672295 GGGGTTGGGTGCGACATA 59.328 61.111 0.00 0.00 0.00 2.29
112 113 4.360405 GGGGGTTGGGTGCGACAT 62.360 66.667 0.00 0.00 0.00 3.06
117 118 4.589675 TTGTCGGGGGTTGGGTGC 62.590 66.667 0.00 0.00 0.00 5.01
118 119 1.770749 TACTTGTCGGGGGTTGGGTG 61.771 60.000 0.00 0.00 0.00 4.61
119 120 1.461849 TACTTGTCGGGGGTTGGGT 60.462 57.895 0.00 0.00 0.00 4.51
120 121 1.298667 CTACTTGTCGGGGGTTGGG 59.701 63.158 0.00 0.00 0.00 4.12
121 122 0.399075 AACTACTTGTCGGGGGTTGG 59.601 55.000 0.00 0.00 0.00 3.77
122 123 1.804601 GAACTACTTGTCGGGGGTTG 58.195 55.000 0.00 0.00 0.00 3.77
123 124 0.319405 CGAACTACTTGTCGGGGGTT 59.681 55.000 0.00 0.00 0.00 4.11
124 125 0.829182 ACGAACTACTTGTCGGGGGT 60.829 55.000 0.00 0.00 0.00 4.95
125 126 0.108945 GACGAACTACTTGTCGGGGG 60.109 60.000 0.00 0.00 0.00 5.40
126 127 0.108945 GGACGAACTACTTGTCGGGG 60.109 60.000 0.00 0.00 33.45 5.73
127 128 0.599558 TGGACGAACTACTTGTCGGG 59.400 55.000 0.00 0.00 33.45 5.14
128 129 1.001048 TGTGGACGAACTACTTGTCGG 60.001 52.381 0.00 0.00 33.45 4.79
129 130 2.049228 GTGTGGACGAACTACTTGTCG 58.951 52.381 0.00 0.00 33.45 4.35
142 143 1.011968 TAGTTCATGCGCGTGTGGAC 61.012 55.000 27.72 22.48 0.00 4.02
143 144 0.735978 CTAGTTCATGCGCGTGTGGA 60.736 55.000 27.72 13.28 0.00 4.02
144 145 1.695893 CCTAGTTCATGCGCGTGTGG 61.696 60.000 27.72 18.15 0.00 4.17
145 146 1.014044 ACCTAGTTCATGCGCGTGTG 61.014 55.000 27.72 14.58 0.00 3.82
146 147 1.014044 CACCTAGTTCATGCGCGTGT 61.014 55.000 27.72 12.65 0.00 4.49
147 148 1.695893 CCACCTAGTTCATGCGCGTG 61.696 60.000 23.73 23.73 0.00 5.34
148 149 1.447838 CCACCTAGTTCATGCGCGT 60.448 57.895 8.43 0.00 0.00 6.01
149 150 2.813179 GCCACCTAGTTCATGCGCG 61.813 63.158 0.00 0.00 0.00 6.86
150 151 0.179084 TAGCCACCTAGTTCATGCGC 60.179 55.000 0.00 0.00 0.00 6.09
151 152 1.858091 CTAGCCACCTAGTTCATGCG 58.142 55.000 0.00 0.00 36.99 4.73
152 153 1.139853 AGCTAGCCACCTAGTTCATGC 59.860 52.381 12.13 0.00 42.51 4.06
153 154 2.169352 ACAGCTAGCCACCTAGTTCATG 59.831 50.000 12.13 0.54 42.51 3.07
154 155 2.169352 CACAGCTAGCCACCTAGTTCAT 59.831 50.000 12.13 0.00 42.51 2.57
155 156 1.550524 CACAGCTAGCCACCTAGTTCA 59.449 52.381 12.13 0.00 42.51 3.18
156 157 1.550976 ACACAGCTAGCCACCTAGTTC 59.449 52.381 12.13 0.00 42.51 3.01
157 158 1.276421 CACACAGCTAGCCACCTAGTT 59.724 52.381 12.13 0.00 42.51 2.24
158 159 0.898320 CACACAGCTAGCCACCTAGT 59.102 55.000 12.13 0.00 42.51 2.57
159 160 0.176680 CCACACAGCTAGCCACCTAG 59.823 60.000 12.13 0.00 43.23 3.02
160 161 1.264749 CCCACACAGCTAGCCACCTA 61.265 60.000 12.13 0.00 0.00 3.08
161 162 2.596851 CCCACACAGCTAGCCACCT 61.597 63.158 12.13 0.00 0.00 4.00
162 163 2.045926 CCCACACAGCTAGCCACC 60.046 66.667 12.13 0.00 0.00 4.61
163 164 2.747855 GCCCACACAGCTAGCCAC 60.748 66.667 12.13 0.00 0.00 5.01
164 165 3.248418 TGCCCACACAGCTAGCCA 61.248 61.111 12.13 0.00 0.00 4.75
165 166 2.437359 CTGCCCACACAGCTAGCC 60.437 66.667 12.13 0.00 0.00 3.93
166 167 0.606401 TTTCTGCCCACACAGCTAGC 60.606 55.000 6.62 6.62 37.59 3.42
167 168 1.160137 GTTTCTGCCCACACAGCTAG 58.840 55.000 0.00 0.00 37.59 3.42
168 169 0.764890 AGTTTCTGCCCACACAGCTA 59.235 50.000 0.00 0.00 37.59 3.32
169 170 0.764890 TAGTTTCTGCCCACACAGCT 59.235 50.000 0.00 0.00 37.59 4.24
170 171 1.160137 CTAGTTTCTGCCCACACAGC 58.840 55.000 0.00 0.00 37.59 4.40
171 172 2.550830 ACTAGTTTCTGCCCACACAG 57.449 50.000 0.00 0.00 39.12 3.66
172 173 2.805295 CGAACTAGTTTCTGCCCACACA 60.805 50.000 10.02 0.00 31.20 3.72
173 174 1.798813 CGAACTAGTTTCTGCCCACAC 59.201 52.381 10.02 0.00 31.20 3.82
174 175 1.876416 GCGAACTAGTTTCTGCCCACA 60.876 52.381 10.02 0.00 31.51 4.17
175 176 0.796927 GCGAACTAGTTTCTGCCCAC 59.203 55.000 10.02 0.00 31.51 4.61
176 177 0.321298 GGCGAACTAGTTTCTGCCCA 60.321 55.000 25.43 0.00 42.93 5.36
177 178 2.467962 GGCGAACTAGTTTCTGCCC 58.532 57.895 25.43 12.84 42.93 5.36
178 179 0.321298 TGGGCGAACTAGTTTCTGCC 60.321 55.000 26.78 26.78 45.55 4.85
179 180 0.796927 GTGGGCGAACTAGTTTCTGC 59.203 55.000 10.02 13.68 34.77 4.26
180 181 1.798813 GTGTGGGCGAACTAGTTTCTG 59.201 52.381 10.02 4.45 31.20 3.02
181 182 1.414919 TGTGTGGGCGAACTAGTTTCT 59.585 47.619 10.02 0.00 31.20 2.52
182 183 1.873698 TGTGTGGGCGAACTAGTTTC 58.126 50.000 10.02 5.00 0.00 2.78
183 184 1.944709 GTTGTGTGGGCGAACTAGTTT 59.055 47.619 10.02 0.00 0.00 2.66
184 185 1.589803 GTTGTGTGGGCGAACTAGTT 58.410 50.000 8.13 8.13 0.00 2.24
185 186 0.599204 CGTTGTGTGGGCGAACTAGT 60.599 55.000 0.00 0.00 0.00 2.57
186 187 1.897398 GCGTTGTGTGGGCGAACTAG 61.897 60.000 0.00 0.00 0.00 2.57
187 188 1.957186 GCGTTGTGTGGGCGAACTA 60.957 57.895 0.00 0.00 0.00 2.24
188 189 3.276846 GCGTTGTGTGGGCGAACT 61.277 61.111 0.00 0.00 0.00 3.01
189 190 3.521308 CTGCGTTGTGTGGGCGAAC 62.521 63.158 0.00 0.00 0.00 3.95
190 191 3.276091 CTGCGTTGTGTGGGCGAA 61.276 61.111 0.00 0.00 0.00 4.70
193 194 4.332637 CAGCTGCGTTGTGTGGGC 62.333 66.667 0.00 0.00 0.00 5.36
194 195 3.663176 CCAGCTGCGTTGTGTGGG 61.663 66.667 8.66 0.00 0.00 4.61
195 196 4.332637 GCCAGCTGCGTTGTGTGG 62.333 66.667 8.66 0.00 0.00 4.17
196 197 3.531920 CTGCCAGCTGCGTTGTGTG 62.532 63.158 8.66 0.00 45.60 3.82
197 198 3.282157 CTGCCAGCTGCGTTGTGT 61.282 61.111 8.66 0.00 45.60 3.72
198 199 2.974148 TCTGCCAGCTGCGTTGTG 60.974 61.111 8.66 0.00 45.60 3.33
199 200 2.974698 GTCTGCCAGCTGCGTTGT 60.975 61.111 8.66 0.00 45.60 3.32
200 201 2.962827 CTGTCTGCCAGCTGCGTTG 61.963 63.158 8.66 0.00 45.60 4.10
201 202 2.667536 CTGTCTGCCAGCTGCGTT 60.668 61.111 8.66 0.00 45.60 4.84
208 209 3.046087 CACCACGCTGTCTGCCAG 61.046 66.667 0.00 0.00 44.53 4.85
218 219 2.549282 CACACGTTAGCACCACGC 59.451 61.111 2.59 0.00 41.53 5.34
219 220 2.314647 CCCACACGTTAGCACCACG 61.315 63.158 0.00 1.24 43.52 4.94
220 221 2.613506 GCCCACACGTTAGCACCAC 61.614 63.158 0.00 0.00 0.00 4.16
221 222 2.281208 GCCCACACGTTAGCACCA 60.281 61.111 0.00 0.00 0.00 4.17
222 223 1.448922 TTTGCCCACACGTTAGCACC 61.449 55.000 0.00 0.00 34.37 5.01
223 224 0.317519 GTTTGCCCACACGTTAGCAC 60.318 55.000 0.00 0.00 34.37 4.40
224 225 0.464735 AGTTTGCCCACACGTTAGCA 60.465 50.000 0.00 0.00 0.00 3.49
225 226 0.237498 GAGTTTGCCCACACGTTAGC 59.763 55.000 0.00 0.00 0.00 3.09
226 227 1.531149 CAGAGTTTGCCCACACGTTAG 59.469 52.381 0.00 0.00 0.00 2.34
227 228 1.588674 CAGAGTTTGCCCACACGTTA 58.411 50.000 0.00 0.00 0.00 3.18
228 229 2.404083 CAGAGTTTGCCCACACGTT 58.596 52.632 0.00 0.00 0.00 3.99
229 230 4.141144 CAGAGTTTGCCCACACGT 57.859 55.556 0.00 0.00 0.00 4.49
238 239 1.165907 TCTGGGCGTTGCAGAGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
239 240 1.148273 TCTGGGCGTTGCAGAGTTT 59.852 52.632 0.00 0.00 0.00 2.66
240 241 1.598130 GTCTGGGCGTTGCAGAGTT 60.598 57.895 0.00 0.00 0.00 3.01
241 242 2.031163 GTCTGGGCGTTGCAGAGT 59.969 61.111 0.00 0.00 0.00 3.24
242 243 0.957395 AATGTCTGGGCGTTGCAGAG 60.957 55.000 0.00 0.00 0.00 3.35
243 244 0.323302 TAATGTCTGGGCGTTGCAGA 59.677 50.000 0.00 0.00 0.00 4.26
244 245 0.729116 CTAATGTCTGGGCGTTGCAG 59.271 55.000 0.00 0.00 0.00 4.41
245 246 1.305219 GCTAATGTCTGGGCGTTGCA 61.305 55.000 0.00 0.00 0.00 4.08
246 247 1.429423 GCTAATGTCTGGGCGTTGC 59.571 57.895 0.00 0.00 0.00 4.17
247 248 1.715585 CGCTAATGTCTGGGCGTTG 59.284 57.895 0.00 0.00 42.23 4.10
248 249 4.201951 CGCTAATGTCTGGGCGTT 57.798 55.556 0.00 0.00 42.23 4.84
251 252 3.272334 CGGCGCTAATGTCTGGGC 61.272 66.667 7.64 0.00 40.67 5.36
252 253 1.883084 GACGGCGCTAATGTCTGGG 60.883 63.158 6.90 0.00 0.00 4.45
253 254 1.883084 GGACGGCGCTAATGTCTGG 60.883 63.158 6.90 0.00 33.21 3.86
254 255 0.384309 TAGGACGGCGCTAATGTCTG 59.616 55.000 6.90 0.00 33.21 3.51
255 256 0.384669 GTAGGACGGCGCTAATGTCT 59.615 55.000 6.90 0.49 33.21 3.41
256 257 0.101759 TGTAGGACGGCGCTAATGTC 59.898 55.000 6.90 10.54 0.00 3.06
257 258 0.750850 ATGTAGGACGGCGCTAATGT 59.249 50.000 6.90 0.34 0.00 2.71
258 259 1.139989 CATGTAGGACGGCGCTAATG 58.860 55.000 6.90 4.89 0.00 1.90
259 260 0.033504 CCATGTAGGACGGCGCTAAT 59.966 55.000 6.90 0.00 41.22 1.73
260 261 1.440060 CCATGTAGGACGGCGCTAA 59.560 57.895 6.90 0.00 41.22 3.09
261 262 3.125607 CCATGTAGGACGGCGCTA 58.874 61.111 6.90 0.00 41.22 4.26
262 263 4.530857 GCCATGTAGGACGGCGCT 62.531 66.667 6.90 0.00 41.22 5.92
265 266 2.106683 GTGTGCCATGTAGGACGGC 61.107 63.158 0.00 0.00 46.43 5.68
266 267 0.321210 TTGTGTGCCATGTAGGACGG 60.321 55.000 0.00 0.00 41.22 4.79
267 268 1.518325 TTTGTGTGCCATGTAGGACG 58.482 50.000 0.00 0.00 41.22 4.79
268 269 3.505680 TGATTTTGTGTGCCATGTAGGAC 59.494 43.478 0.00 0.00 41.22 3.85
269 270 3.760738 TGATTTTGTGTGCCATGTAGGA 58.239 40.909 0.00 0.00 41.22 2.94
270 271 4.236935 GTTGATTTTGTGTGCCATGTAGG 58.763 43.478 0.00 0.00 41.84 3.18
271 272 4.022068 AGGTTGATTTTGTGTGCCATGTAG 60.022 41.667 0.00 0.00 0.00 2.74
272 273 3.894427 AGGTTGATTTTGTGTGCCATGTA 59.106 39.130 0.00 0.00 0.00 2.29
273 274 2.699846 AGGTTGATTTTGTGTGCCATGT 59.300 40.909 0.00 0.00 0.00 3.21
274 275 3.389925 AGGTTGATTTTGTGTGCCATG 57.610 42.857 0.00 0.00 0.00 3.66
275 276 4.420522 AAAGGTTGATTTTGTGTGCCAT 57.579 36.364 0.00 0.00 0.00 4.40
276 277 3.902881 AAAGGTTGATTTTGTGTGCCA 57.097 38.095 0.00 0.00 0.00 4.92
277 278 4.187694 TGAAAAGGTTGATTTTGTGTGCC 58.812 39.130 0.00 0.00 32.62 5.01
278 279 5.740406 CATGAAAAGGTTGATTTTGTGTGC 58.260 37.500 0.00 0.00 32.62 4.57
279 280 5.277442 GGCATGAAAAGGTTGATTTTGTGTG 60.277 40.000 0.00 0.00 32.62 3.82
280 281 4.815846 GGCATGAAAAGGTTGATTTTGTGT 59.184 37.500 0.00 0.00 32.62 3.72
281 282 4.815308 TGGCATGAAAAGGTTGATTTTGTG 59.185 37.500 0.00 0.00 32.62 3.33
282 283 5.033589 TGGCATGAAAAGGTTGATTTTGT 57.966 34.783 0.00 0.00 32.62 2.83
283 284 5.759273 TCTTGGCATGAAAAGGTTGATTTTG 59.241 36.000 0.00 0.00 32.62 2.44
284 285 5.927819 TCTTGGCATGAAAAGGTTGATTTT 58.072 33.333 0.00 0.00 35.12 1.82
285 286 5.549742 TCTTGGCATGAAAAGGTTGATTT 57.450 34.783 0.00 0.00 0.00 2.17
286 287 5.750352 ATCTTGGCATGAAAAGGTTGATT 57.250 34.783 7.20 0.00 0.00 2.57
287 288 5.622914 CGAATCTTGGCATGAAAAGGTTGAT 60.623 40.000 7.20 0.00 26.89 2.57
288 289 4.321156 CGAATCTTGGCATGAAAAGGTTGA 60.321 41.667 7.20 0.00 26.89 3.18
289 290 3.922240 CGAATCTTGGCATGAAAAGGTTG 59.078 43.478 7.20 1.91 26.89 3.77
290 291 3.573967 ACGAATCTTGGCATGAAAAGGTT 59.426 39.130 7.20 1.01 29.40 3.50
291 292 3.057315 CACGAATCTTGGCATGAAAAGGT 60.057 43.478 7.20 0.00 0.00 3.50
292 293 3.504863 CACGAATCTTGGCATGAAAAGG 58.495 45.455 7.20 0.79 0.00 3.11
293 294 2.919229 GCACGAATCTTGGCATGAAAAG 59.081 45.455 7.20 0.00 0.00 2.27
294 295 2.295629 TGCACGAATCTTGGCATGAAAA 59.704 40.909 7.20 0.00 0.00 2.29
295 296 1.885233 TGCACGAATCTTGGCATGAAA 59.115 42.857 7.20 0.00 0.00 2.69
296 297 1.532523 TGCACGAATCTTGGCATGAA 58.467 45.000 7.20 0.00 0.00 2.57
297 298 1.532523 TTGCACGAATCTTGGCATGA 58.467 45.000 5.47 5.47 35.98 3.07
298 299 2.350899 TTTGCACGAATCTTGGCATG 57.649 45.000 0.00 0.00 35.98 4.06
299 300 2.353011 CCTTTTGCACGAATCTTGGCAT 60.353 45.455 0.00 0.00 35.98 4.40
300 301 1.000385 CCTTTTGCACGAATCTTGGCA 60.000 47.619 0.00 0.00 0.00 4.92
301 302 1.701704 CCTTTTGCACGAATCTTGGC 58.298 50.000 0.00 0.00 0.00 4.52
302 303 1.701704 GCCTTTTGCACGAATCTTGG 58.298 50.000 0.00 0.00 40.77 3.61
313 314 1.202114 TCGTCATCCAATGCCTTTTGC 59.798 47.619 0.00 0.00 41.77 3.68
314 315 3.129113 TGATCGTCATCCAATGCCTTTTG 59.871 43.478 0.00 0.00 0.00 2.44
315 316 3.355378 TGATCGTCATCCAATGCCTTTT 58.645 40.909 0.00 0.00 0.00 2.27
316 317 3.003394 TGATCGTCATCCAATGCCTTT 57.997 42.857 0.00 0.00 0.00 3.11
317 318 2.715749 TGATCGTCATCCAATGCCTT 57.284 45.000 0.00 0.00 0.00 4.35
318 319 2.569059 CTTGATCGTCATCCAATGCCT 58.431 47.619 0.00 0.00 0.00 4.75
319 320 1.605710 CCTTGATCGTCATCCAATGCC 59.394 52.381 0.00 0.00 0.00 4.40
320 321 1.002033 GCCTTGATCGTCATCCAATGC 60.002 52.381 0.00 0.00 0.00 3.56
321 322 1.262417 CGCCTTGATCGTCATCCAATG 59.738 52.381 0.00 0.00 0.00 2.82
322 323 1.134401 ACGCCTTGATCGTCATCCAAT 60.134 47.619 0.00 0.00 34.84 3.16
323 324 0.249120 ACGCCTTGATCGTCATCCAA 59.751 50.000 0.00 0.00 34.84 3.53
324 325 0.460109 CACGCCTTGATCGTCATCCA 60.460 55.000 0.00 0.00 38.19 3.41
325 326 0.460284 ACACGCCTTGATCGTCATCC 60.460 55.000 0.00 0.00 38.19 3.51
326 327 0.647410 CACACGCCTTGATCGTCATC 59.353 55.000 0.00 0.00 38.19 2.92
327 328 0.740868 CCACACGCCTTGATCGTCAT 60.741 55.000 0.00 0.00 38.19 3.06
328 329 1.374125 CCACACGCCTTGATCGTCA 60.374 57.895 0.00 0.00 38.19 4.35
329 330 2.100631 CCCACACGCCTTGATCGTC 61.101 63.158 0.00 0.00 38.19 4.20
330 331 2.047274 CCCACACGCCTTGATCGT 60.047 61.111 0.00 0.00 41.28 3.73
331 332 3.499737 GCCCACACGCCTTGATCG 61.500 66.667 0.00 0.00 0.00 3.69
332 333 3.499737 CGCCCACACGCCTTGATC 61.500 66.667 0.00 0.00 0.00 2.92
333 334 3.958147 CTCGCCCACACGCCTTGAT 62.958 63.158 0.00 0.00 0.00 2.57
334 335 4.680237 CTCGCCCACACGCCTTGA 62.680 66.667 0.00 0.00 0.00 3.02
335 336 4.988598 ACTCGCCCACACGCCTTG 62.989 66.667 0.00 0.00 0.00 3.61
336 337 4.250305 AACTCGCCCACACGCCTT 62.250 61.111 0.00 0.00 0.00 4.35
337 338 4.988598 CAACTCGCCCACACGCCT 62.989 66.667 0.00 0.00 0.00 5.52
340 341 2.718747 TTACCCAACTCGCCCACACG 62.719 60.000 0.00 0.00 0.00 4.49
341 342 0.322187 ATTACCCAACTCGCCCACAC 60.322 55.000 0.00 0.00 0.00 3.82
342 343 0.322098 CATTACCCAACTCGCCCACA 60.322 55.000 0.00 0.00 0.00 4.17
343 344 1.654023 GCATTACCCAACTCGCCCAC 61.654 60.000 0.00 0.00 0.00 4.61
344 345 1.377987 GCATTACCCAACTCGCCCA 60.378 57.895 0.00 0.00 0.00 5.36
345 346 2.119029 GGCATTACCCAACTCGCCC 61.119 63.158 0.00 0.00 33.31 6.13
346 347 3.509659 GGCATTACCCAACTCGCC 58.490 61.111 0.00 0.00 0.00 5.54
355 356 1.873165 CACACGTGTGGGCATTACC 59.127 57.895 35.65 0.00 42.10 2.85
368 369 0.233848 GAAACACTAACGCCCACACG 59.766 55.000 0.00 0.00 39.50 4.49
369 370 0.589708 GGAAACACTAACGCCCACAC 59.410 55.000 0.00 0.00 0.00 3.82
370 371 0.881159 CGGAAACACTAACGCCCACA 60.881 55.000 0.00 0.00 0.00 4.17
371 372 0.881600 ACGGAAACACTAACGCCCAC 60.882 55.000 0.00 0.00 0.00 4.61
372 373 0.179051 AACGGAAACACTAACGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
373 374 0.946528 AAACGGAAACACTAACGCCC 59.053 50.000 0.00 0.00 0.00 6.13
374 375 1.869132 AGAAACGGAAACACTAACGCC 59.131 47.619 0.00 0.00 0.00 5.68
375 376 2.798847 AGAGAAACGGAAACACTAACGC 59.201 45.455 0.00 0.00 0.00 4.84
376 377 6.515043 TTTAGAGAAACGGAAACACTAACG 57.485 37.500 0.00 0.00 0.00 3.18
377 378 7.128331 GGTTTTAGAGAAACGGAAACACTAAC 58.872 38.462 0.00 0.00 33.35 2.34
378 379 6.260714 GGGTTTTAGAGAAACGGAAACACTAA 59.739 38.462 0.00 0.00 32.81 2.24
379 380 5.759763 GGGTTTTAGAGAAACGGAAACACTA 59.240 40.000 0.00 0.00 32.81 2.74
380 381 4.577693 GGGTTTTAGAGAAACGGAAACACT 59.422 41.667 0.00 0.00 32.81 3.55
381 382 4.577693 AGGGTTTTAGAGAAACGGAAACAC 59.422 41.667 0.00 0.00 34.38 3.32
382 383 4.577283 CAGGGTTTTAGAGAAACGGAAACA 59.423 41.667 0.00 0.00 33.35 2.83
383 384 4.818005 TCAGGGTTTTAGAGAAACGGAAAC 59.182 41.667 0.00 0.00 0.00 2.78
384 385 5.038651 TCAGGGTTTTAGAGAAACGGAAA 57.961 39.130 0.00 0.00 0.00 3.13
385 386 4.693042 TCAGGGTTTTAGAGAAACGGAA 57.307 40.909 0.00 0.00 0.00 4.30
386 387 4.575885 CATCAGGGTTTTAGAGAAACGGA 58.424 43.478 0.00 0.00 0.00 4.69
387 388 3.127030 GCATCAGGGTTTTAGAGAAACGG 59.873 47.826 0.00 0.00 0.00 4.44
443 452 4.199840 TCGCTGGTAACGAAAAGAAAAC 57.800 40.909 0.00 0.00 36.44 2.43
457 473 1.089920 GAGCATCAATGTTCGCTGGT 58.910 50.000 0.00 0.00 34.12 4.00
492 508 5.488341 AGAAATTGACAGGTATGTAGCGTT 58.512 37.500 0.00 0.00 40.68 4.84
536 552 8.694581 AGTAGTACTAGGTGTTATCCATCTTC 57.305 38.462 1.87 0.00 35.62 2.87
554 612 3.521947 ATCAAACCGCTGGAGTAGTAC 57.478 47.619 1.50 0.00 0.00 2.73
557 615 3.865745 CAGTAATCAAACCGCTGGAGTAG 59.134 47.826 1.50 0.00 0.00 2.57
636 780 0.669625 GCCGGAAAGTGCGTAGAGTT 60.670 55.000 5.05 0.00 0.00 3.01
641 785 2.357760 GGTGCCGGAAAGTGCGTA 60.358 61.111 5.05 0.00 0.00 4.42
701 850 5.179368 CACATGAGTTAGTGTGGGTAGTTTG 59.821 44.000 0.00 0.00 41.46 2.93
759 2357 8.409371 CGCATCTCCATGACTTGTATAGTATAT 58.591 37.037 0.00 0.00 37.17 0.86
760 2358 7.393515 ACGCATCTCCATGACTTGTATAGTATA 59.606 37.037 0.00 0.00 37.17 1.47
815 2543 2.935201 CAACTCTATGCTCAGTCCTTGC 59.065 50.000 0.00 0.00 0.00 4.01
841 2569 1.066143 AGACGATGGCGAGGTTTGATT 60.066 47.619 0.00 0.00 41.64 2.57
842 2570 0.537188 AGACGATGGCGAGGTTTGAT 59.463 50.000 0.00 0.00 41.64 2.57
843 2571 0.320374 AAGACGATGGCGAGGTTTGA 59.680 50.000 0.00 0.00 41.64 2.69
844 2572 0.443869 CAAGACGATGGCGAGGTTTG 59.556 55.000 0.00 0.00 41.64 2.93
845 2573 0.320374 TCAAGACGATGGCGAGGTTT 59.680 50.000 0.00 0.00 41.64 3.27
846 2574 0.537188 ATCAAGACGATGGCGAGGTT 59.463 50.000 0.00 0.00 41.64 3.50
847 2575 0.179100 CATCAAGACGATGGCGAGGT 60.179 55.000 0.00 0.00 46.73 3.85
848 2576 2.598045 CATCAAGACGATGGCGAGG 58.402 57.895 0.00 0.00 46.73 4.63
855 2583 4.336433 CCTTGGTAATTGCATCAAGACGAT 59.664 41.667 12.03 0.00 38.96 3.73
856 2584 3.689161 CCTTGGTAATTGCATCAAGACGA 59.311 43.478 12.03 0.00 38.96 4.20
857 2585 3.440173 ACCTTGGTAATTGCATCAAGACG 59.560 43.478 12.03 2.46 38.96 4.18
933 2673 1.134068 GGAAGAATGGTAGGGCAGACC 60.134 57.143 0.27 0.27 40.67 3.85
1074 2814 2.125952 TGCAGCGTGATCTGACCG 60.126 61.111 0.00 0.00 36.19 4.79
1084 2824 2.553602 TGTTCAAATTCATCTGCAGCGT 59.446 40.909 9.47 0.00 0.00 5.07
1141 2881 0.403271 ACCTTGAGCACTGCCTTGAT 59.597 50.000 0.00 0.00 0.00 2.57
1379 3148 0.382515 CTACCGCTCAGCAGACCTAC 59.617 60.000 0.00 0.00 0.00 3.18
1382 3152 2.202810 GCTACCGCTCAGCAGACC 60.203 66.667 0.00 0.00 38.93 3.85
1407 3203 7.806180 ACCTATATGGAAGCTCATTTTGTAGT 58.194 34.615 0.00 0.00 39.71 2.73
1458 3255 6.816134 TTCAATAGCTCAGCATGTTTAACA 57.184 33.333 0.00 0.00 37.40 2.41
1468 3265 4.630111 ACTAGCAGATTCAATAGCTCAGC 58.370 43.478 0.25 0.00 38.47 4.26
1494 3291 5.640189 AGATCAAAGATCAAGCCAAACAG 57.360 39.130 9.43 0.00 0.00 3.16
1511 3308 5.536161 TGAAGATGTGGACGATCATAGATCA 59.464 40.000 7.67 0.00 0.00 2.92
1586 3422 4.697352 GCTCATTGTGTTTGTATCCACTCT 59.303 41.667 0.00 0.00 32.76 3.24
1587 3423 4.455533 TGCTCATTGTGTTTGTATCCACTC 59.544 41.667 0.00 0.00 32.76 3.51
1766 3748 2.044946 GTTTCAGATGCCCGGCCT 60.045 61.111 7.03 0.00 0.00 5.19
1815 3802 2.289756 TGCCACCTTTAATGACGTGCTA 60.290 45.455 0.00 0.00 0.00 3.49
1821 3808 3.763897 AGACCAATGCCACCTTTAATGAC 59.236 43.478 0.00 0.00 0.00 3.06
1918 3909 6.985645 GGATATTACAAATGCATTCAGCCAAA 59.014 34.615 13.38 5.15 44.83 3.28
2127 4122 6.995686 TGCAGTCTGTTAACTTGAATTCCTTA 59.004 34.615 7.22 0.00 0.00 2.69
2339 4334 8.429237 TTGAATTGGGAACTATTGTAAACCAT 57.571 30.769 0.00 0.00 35.89 3.55
2475 4470 7.095183 AGGGAATTATGGATCATCTGCTTTA 57.905 36.000 0.00 0.00 0.00 1.85
2581 4576 9.807649 CTCTCCCCAATTTTTAACATATCTTTG 57.192 33.333 0.00 0.00 0.00 2.77
2627 4622 1.663695 CCTTCACTTCGTGTGGTTGT 58.336 50.000 10.35 0.00 46.20 3.32
2752 4748 7.814587 CCTATTTCTTCCAATTGTTCTTTGTCC 59.185 37.037 4.43 0.00 0.00 4.02
2780 4776 3.191162 GCACACTTCATTGCAATGACCTA 59.809 43.478 35.75 23.00 44.54 3.08
3086 5083 6.259608 CCCAAAAGCTGACTAATGTATCTCTG 59.740 42.308 0.00 0.00 0.00 3.35
3274 5280 7.167535 TGTGATGTACTCCAAATCATTCTCAA 58.832 34.615 0.00 0.00 33.19 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.