Multiple sequence alignment - TraesCS1B01G470000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G470000 chr1B 100.000 5791 0 0 1 5791 678552346 678546556 0.000000e+00 10695.0
1 TraesCS1B01G470000 chr1B 97.269 2600 55 5 1133 3717 678746316 678743718 0.000000e+00 4394.0
2 TraesCS1B01G470000 chr1B 87.444 2915 318 37 2274 5160 678441654 678438760 0.000000e+00 3312.0
3 TraesCS1B01G470000 chr1B 87.138 2830 320 30 2274 5086 678315468 678318270 0.000000e+00 3169.0
4 TraesCS1B01G470000 chr1B 86.624 2841 335 28 2274 5086 678787032 678784209 0.000000e+00 3099.0
5 TraesCS1B01G470000 chr1B 84.831 3138 404 52 2274 5383 678720625 678717532 0.000000e+00 3092.0
6 TraesCS1B01G470000 chr1B 85.332 3027 349 62 2379 5382 678757781 678754827 0.000000e+00 3042.0
7 TraesCS1B01G470000 chr1B 83.815 3219 432 53 2202 5382 641200491 641203658 0.000000e+00 2976.0
8 TraesCS1B01G470000 chr1B 85.750 2821 370 22 2274 5086 678482348 678479552 0.000000e+00 2953.0
9 TraesCS1B01G470000 chr1B 96.548 1680 46 2 3833 5512 678751955 678750288 0.000000e+00 2771.0
10 TraesCS1B01G470000 chr1B 91.033 1840 133 14 1 1818 641197947 641199776 0.000000e+00 2455.0
11 TraesCS1B01G470000 chr1B 86.676 2124 227 33 2274 4385 641125553 641127632 0.000000e+00 2303.0
12 TraesCS1B01G470000 chr1B 93.101 1261 82 5 1 1257 678605566 678604307 0.000000e+00 1842.0
13 TraesCS1B01G470000 chr1B 93.153 1256 81 4 1 1254 678312270 678313522 0.000000e+00 1838.0
14 TraesCS1B01G470000 chr1B 92.051 1258 89 8 2 1257 678790150 678788902 0.000000e+00 1759.0
15 TraesCS1B01G470000 chr1B 91.401 1256 97 7 1 1254 678407002 678408248 0.000000e+00 1711.0
16 TraesCS1B01G470000 chr1B 91.200 1250 106 4 11 1257 678444490 678443242 0.000000e+00 1696.0
17 TraesCS1B01G470000 chr1B 90.880 1250 108 6 11 1257 678738784 678737538 0.000000e+00 1672.0
18 TraesCS1B01G470000 chr1B 86.019 1545 189 19 3556 5086 678601857 678600326 0.000000e+00 1631.0
19 TraesCS1B01G470000 chr1B 88.715 1214 135 2 2275 3486 678603094 678601881 0.000000e+00 1482.0
20 TraesCS1B01G470000 chr1B 80.283 1344 188 38 4053 5383 678417255 678418534 0.000000e+00 942.0
21 TraesCS1B01G470000 chr1B 98.233 283 5 0 5509 5791 528032641 528032359 4.030000e-136 496.0
22 TraesCS1B01G470000 chr1B 88.095 336 34 4 1831 2163 641200156 641200488 1.510000e-105 394.0
23 TraesCS1B01G470000 chr1B 81.407 199 32 5 5187 5383 678479533 678479338 2.160000e-34 158.0
24 TraesCS1B01G470000 chr1B 82.353 153 20 6 5225 5372 678318302 678318452 6.090000e-25 126.0
25 TraesCS1B01G470000 chr1B 81.699 153 21 6 5225 5372 678784177 678784027 2.830000e-23 121.0
26 TraesCS1B01G470000 chr1A 85.564 3131 375 54 2274 5372 584861982 584865067 0.000000e+00 3206.0
27 TraesCS1B01G470000 chr1A 92.772 1259 83 7 1 1254 584847731 584848986 0.000000e+00 1814.0
28 TraesCS1B01G470000 chr1D 86.208 2951 370 27 2308 5247 487280364 487283288 0.000000e+00 3160.0
29 TraesCS1B01G470000 chr1D 94.666 1256 53 7 1 1254 487276109 487277352 0.000000e+00 1936.0
30 TraesCS1B01G470000 chr1D 97.880 283 6 0 5509 5791 23845719 23845437 1.880000e-134 490.0
31 TraesCS1B01G470000 chr1D 79.009 424 63 7 4966 5382 487319995 487320399 3.440000e-67 267.0
32 TraesCS1B01G470000 chr5A 97.902 286 6 0 5506 5791 80390129 80390414 4.030000e-136 496.0
33 TraesCS1B01G470000 chr4B 98.233 283 5 0 5509 5791 446209850 446210132 4.030000e-136 496.0
34 TraesCS1B01G470000 chr7A 97.880 283 6 0 5509 5791 535533358 535533640 1.880000e-134 490.0
35 TraesCS1B01G470000 chr6B 97.880 283 6 0 5509 5791 631354701 631354419 1.880000e-134 490.0
36 TraesCS1B01G470000 chr6B 97.880 283 5 1 5509 5791 478490733 478491014 6.740000e-134 488.0
37 TraesCS1B01G470000 chr3A 97.880 283 6 0 5509 5791 639787282 639787000 1.880000e-134 490.0
38 TraesCS1B01G470000 chr2B 97.880 283 6 0 5509 5791 244076354 244076636 1.880000e-134 490.0
39 TraesCS1B01G470000 chr2D 81.319 91 7 4 5415 5495 459796433 459796523 1.350000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G470000 chr1B 678546556 678552346 5790 True 10695.000000 10695 100.000000 1 5791 1 chr1B.!!$R2 5790
1 TraesCS1B01G470000 chr1B 678743718 678757781 14063 True 3402.333333 4394 93.049667 1133 5512 3 chr1B.!!$R8 4379
2 TraesCS1B01G470000 chr1B 678717532 678720625 3093 True 3092.000000 3092 84.831000 2274 5383 1 chr1B.!!$R3 3109
3 TraesCS1B01G470000 chr1B 678438760 678444490 5730 True 2504.000000 3312 89.322000 11 5160 2 chr1B.!!$R5 5149
4 TraesCS1B01G470000 chr1B 641125553 641127632 2079 False 2303.000000 2303 86.676000 2274 4385 1 chr1B.!!$F1 2111
5 TraesCS1B01G470000 chr1B 641197947 641203658 5711 False 1941.666667 2976 87.647667 1 5382 3 chr1B.!!$F4 5381
6 TraesCS1B01G470000 chr1B 678312270 678318452 6182 False 1711.000000 3169 87.548000 1 5372 3 chr1B.!!$F5 5371
7 TraesCS1B01G470000 chr1B 678407002 678408248 1246 False 1711.000000 1711 91.401000 1 1254 1 chr1B.!!$F2 1253
8 TraesCS1B01G470000 chr1B 678737538 678738784 1246 True 1672.000000 1672 90.880000 11 1257 1 chr1B.!!$R4 1246
9 TraesCS1B01G470000 chr1B 678784027 678790150 6123 True 1659.666667 3099 86.791333 2 5372 3 chr1B.!!$R9 5370
10 TraesCS1B01G470000 chr1B 678600326 678605566 5240 True 1651.666667 1842 89.278333 1 5086 3 chr1B.!!$R7 5085
11 TraesCS1B01G470000 chr1B 678479338 678482348 3010 True 1555.500000 2953 83.578500 2274 5383 2 chr1B.!!$R6 3109
12 TraesCS1B01G470000 chr1B 678417255 678418534 1279 False 942.000000 942 80.283000 4053 5383 1 chr1B.!!$F3 1330
13 TraesCS1B01G470000 chr1A 584861982 584865067 3085 False 3206.000000 3206 85.564000 2274 5372 1 chr1A.!!$F2 3098
14 TraesCS1B01G470000 chr1A 584847731 584848986 1255 False 1814.000000 1814 92.772000 1 1254 1 chr1A.!!$F1 1253
15 TraesCS1B01G470000 chr1D 487276109 487283288 7179 False 2548.000000 3160 90.437000 1 5247 2 chr1D.!!$F2 5246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 887 1.872952 CTTGGACACACGCTGAAATCA 59.127 47.619 0.00 0.00 0.00 2.57 F
1323 1371 0.163788 CTTACAACGCAGCTTGTCCG 59.836 55.000 11.94 3.83 34.64 4.79 F
2853 5633 0.037232 GAACCTTCACGGGTCTCCTG 60.037 60.000 0.00 0.00 46.60 3.86 F
3709 6501 0.039074 GACCTCTCGGGATGCATACG 60.039 60.000 15.02 15.02 38.76 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2853 5633 0.036952 TCTGGCAGTGCTAAGAGTGC 60.037 55.000 16.11 0.0 40.94 4.40 R
2988 5768 1.066858 TCCCTCAACAGACGAGCAATC 60.067 52.381 0.00 0.0 0.00 2.67 R
4599 7401 0.040958 CCATCGCTGCCGCTTATTTC 60.041 55.000 0.00 0.0 0.00 2.17 R
5514 12735 0.034477 CCGTGGGCTTAAATGGACCT 60.034 55.000 0.00 0.0 31.96 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 237 6.706270 GTGACTGATATACGGGAAACATCATT 59.294 38.462 0.00 0.00 0.00 2.57
239 240 9.436957 GACTGATATACGGGAAACATCATTAAT 57.563 33.333 0.00 0.00 0.00 1.40
248 249 6.310149 GGGAAACATCATTAATCCTGGAGAT 58.690 40.000 1.52 0.00 36.48 2.75
250 251 7.609532 GGGAAACATCATTAATCCTGGAGATAG 59.390 40.741 1.52 0.00 33.66 2.08
268 269 6.498651 GGAGATAGAAATCATTGGGAGGACTA 59.501 42.308 0.00 0.00 34.28 2.59
401 403 7.461182 TGGTTTACAATAGTTCCCAATTCAG 57.539 36.000 0.00 0.00 0.00 3.02
431 433 2.940410 CTCAAGTGTGGGTTTACGTGTT 59.060 45.455 0.00 0.00 0.00 3.32
594 596 5.014123 TGTTTTAGATGACCTGTGGGAAGAT 59.986 40.000 0.00 0.00 36.25 2.40
884 887 1.872952 CTTGGACACACGCTGAAATCA 59.127 47.619 0.00 0.00 0.00 2.57
1056 1059 6.166984 TGTGCAATATTTCCAAAAGGTCAA 57.833 33.333 0.00 0.00 0.00 3.18
1113 1116 5.049336 GGTTTCTCTTGGTTTCTCTACTTGC 60.049 44.000 0.00 0.00 0.00 4.01
1182 1185 5.336929 CCTTGAACATTCAAAGCCATCATCA 60.337 40.000 8.33 0.00 45.61 3.07
1241 1246 0.250553 TGTTGGAACTGGCGTAAGGG 60.251 55.000 0.00 0.00 38.28 3.95
1270 1318 8.770438 TCAAGTATAATTCAAAAATTGCCCAC 57.230 30.769 0.00 0.00 35.84 4.61
1286 1334 2.485657 GCCCACTAGGATTTGGACTAGC 60.486 54.545 0.00 0.00 40.19 3.42
1295 1343 5.862845 AGGATTTGGACTAGCATATCACAG 58.137 41.667 0.00 0.00 0.00 3.66
1298 1346 4.327982 TTGGACTAGCATATCACAGAGC 57.672 45.455 0.00 0.00 0.00 4.09
1319 1367 1.398595 GTTGCTTACAACGCAGCTTG 58.601 50.000 0.00 0.00 46.20 4.01
1323 1371 0.163788 CTTACAACGCAGCTTGTCCG 59.836 55.000 11.94 3.83 34.64 4.79
1367 1420 8.022550 TCAGTTATTGATACACACAAATGCAAG 58.977 33.333 0.00 0.00 0.00 4.01
1388 1441 4.401925 AGCCAACATATCCCTAGATTTGC 58.598 43.478 0.00 0.00 35.52 3.68
1392 1445 6.660949 GCCAACATATCCCTAGATTTGCTAAT 59.339 38.462 0.00 0.00 35.52 1.73
1394 1447 9.739276 CCAACATATCCCTAGATTTGCTAATAA 57.261 33.333 0.00 0.00 35.52 1.40
1453 1513 8.856490 ACTGCAACATTCTAGTAAAACAAAAG 57.144 30.769 0.00 0.00 0.00 2.27
1460 1520 9.965824 ACATTCTAGTAAAACAAAAGGTCAATG 57.034 29.630 0.00 0.00 0.00 2.82
1465 1525 6.402222 AGTAAAACAAAAGGTCAATGCACAA 58.598 32.000 0.00 0.00 0.00 3.33
1466 1526 7.047271 AGTAAAACAAAAGGTCAATGCACAAT 58.953 30.769 0.00 0.00 0.00 2.71
1467 1527 5.738118 AAACAAAAGGTCAATGCACAATG 57.262 34.783 0.00 0.00 0.00 2.82
1468 1528 3.132925 ACAAAAGGTCAATGCACAATGC 58.867 40.909 0.00 0.00 45.29 3.56
1496 1669 3.197766 TGAGGTCTTTAGTTCGCATCCAT 59.802 43.478 0.00 0.00 0.00 3.41
1554 1846 6.238648 ACTTATACATGCTATTGGGCTTACC 58.761 40.000 0.00 0.00 40.81 2.85
1604 1897 4.463070 AGTTAACCCCGCTGTTCTTTTTA 58.537 39.130 0.88 0.00 0.00 1.52
1605 1898 4.276678 AGTTAACCCCGCTGTTCTTTTTAC 59.723 41.667 0.88 0.00 0.00 2.01
1607 1902 2.227194 ACCCCGCTGTTCTTTTTACTG 58.773 47.619 0.00 0.00 0.00 2.74
1612 1907 5.182380 CCCCGCTGTTCTTTTTACTGAATAA 59.818 40.000 0.00 0.00 0.00 1.40
1646 1941 5.812286 TCCGGCTTTTAGAAAATTAGACCT 58.188 37.500 0.00 0.00 0.00 3.85
1754 2049 7.243091 TGGAAACCATCATGGATAATCATCAT 58.757 34.615 11.90 0.00 40.96 2.45
1755 2050 7.395206 TGGAAACCATCATGGATAATCATCATC 59.605 37.037 11.90 0.00 40.96 2.92
1760 2055 7.120285 ACCATCATGGATAATCATCATCGAAAC 59.880 37.037 11.90 0.00 40.96 2.78
1762 2057 8.508875 CATCATGGATAATCATCATCGAAACAA 58.491 33.333 0.00 0.00 32.32 2.83
1781 2076 5.241403 ACAAAACTATCTCCATCCACACA 57.759 39.130 0.00 0.00 0.00 3.72
1782 2077 5.248640 ACAAAACTATCTCCATCCACACAG 58.751 41.667 0.00 0.00 0.00 3.66
1791 2086 5.065914 TCTCCATCCACACAGAAAAAGAAG 58.934 41.667 0.00 0.00 0.00 2.85
1794 2089 5.532406 TCCATCCACACAGAAAAAGAAGAAG 59.468 40.000 0.00 0.00 0.00 2.85
1818 2513 4.608948 AAGAAACAGAAGTGTCTCGGAT 57.391 40.909 0.00 0.00 41.56 4.18
1819 2514 4.608948 AGAAACAGAAGTGTCTCGGATT 57.391 40.909 0.00 0.00 37.86 3.01
1820 2515 5.723672 AGAAACAGAAGTGTCTCGGATTA 57.276 39.130 0.00 0.00 37.86 1.75
1821 2516 6.287589 AGAAACAGAAGTGTCTCGGATTAT 57.712 37.500 0.00 0.00 37.86 1.28
1825 2520 4.462834 ACAGAAGTGTCTCGGATTATCACA 59.537 41.667 0.00 0.00 26.76 3.58
1828 2523 6.536582 CAGAAGTGTCTCGGATTATCACAATT 59.463 38.462 0.00 0.00 28.78 2.32
1846 3204 2.391724 TTATCGAATGGGGCCGAGGC 62.392 60.000 5.37 5.37 38.25 4.70
1931 3291 0.542467 TGTTGCCATGCCAGGTCATT 60.542 50.000 0.00 0.00 0.00 2.57
1939 3299 3.074390 CCATGCCAGGTCATTATCCCTAA 59.926 47.826 0.00 0.00 0.00 2.69
1961 3321 1.079503 GCGAGGATGAAGAAAAGCGT 58.920 50.000 0.00 0.00 0.00 5.07
1962 3322 1.061276 GCGAGGATGAAGAAAAGCGTC 59.939 52.381 0.00 0.00 0.00 5.19
1991 3351 7.598869 GGTGTTTCCATTTTCCTACATTTTCTC 59.401 37.037 0.00 0.00 35.97 2.87
2001 3361 7.945033 TTCCTACATTTTCTCATTTTTGTGC 57.055 32.000 0.00 0.00 0.00 4.57
2014 3374 4.955925 TTTTTGTGCTCTTTTCTCACGA 57.044 36.364 0.00 0.00 33.69 4.35
2023 3383 4.617959 CTCTTTTCTCACGAGTGTTGGTA 58.382 43.478 2.97 0.00 0.00 3.25
2027 3387 3.364889 TCTCACGAGTGTTGGTAGTTG 57.635 47.619 2.97 0.00 0.00 3.16
2043 3417 9.113876 GTTGGTAGTTGTTTCTGAATTTTATCG 57.886 33.333 0.00 0.00 0.00 2.92
2131 3526 6.476378 AGTAAATCATGTCTAACTGGCAGTT 58.524 36.000 32.96 32.96 41.97 3.16
2133 3528 3.057969 TCATGTCTAACTGGCAGTTGG 57.942 47.619 36.40 33.63 39.11 3.77
2138 3533 1.974957 TCTAACTGGCAGTTGGTAGCA 59.025 47.619 36.40 18.69 39.11 3.49
2139 3534 2.028112 TCTAACTGGCAGTTGGTAGCAG 60.028 50.000 36.40 25.73 39.11 4.24
2155 3550 4.037446 GGTAGCAGAAAACAACCATCACAA 59.963 41.667 0.00 0.00 0.00 3.33
2163 3558 7.064371 CAGAAAACAACCATCACAACATTGAAA 59.936 33.333 0.00 0.00 0.00 2.69
2165 3560 6.660887 AACAACCATCACAACATTGAAAAC 57.339 33.333 0.00 0.00 0.00 2.43
2166 3561 5.115480 ACAACCATCACAACATTGAAAACC 58.885 37.500 0.00 0.00 0.00 3.27
2185 3580 2.993449 CATTTTGCAATGGTTTGGCC 57.007 45.000 0.00 0.00 36.82 5.36
2190 3585 0.249657 TGCAATGGTTTGGCCGTTTC 60.250 50.000 0.00 0.00 43.70 2.78
2194 3589 1.923356 ATGGTTTGGCCGTTTCAGAT 58.077 45.000 0.00 0.00 41.21 2.90
2196 3591 3.080300 TGGTTTGGCCGTTTCAGATAT 57.920 42.857 0.00 0.00 41.21 1.63
2232 3628 7.703328 TGGTTTTATGACTCAAAGTTCAGAAC 58.297 34.615 5.00 5.00 0.00 3.01
2242 3638 6.263168 ACTCAAAGTTCAGAACCTAAACATGG 59.737 38.462 9.85 0.00 0.00 3.66
2419 5199 7.664082 AAGTCTGACACTACTGAATGATTTG 57.336 36.000 10.88 0.00 32.30 2.32
2501 5281 4.511454 GTGCATGATTTAGCAAGATCGGTA 59.489 41.667 0.00 0.00 43.20 4.02
2508 5288 4.746535 TTAGCAAGATCGGTAATGGACA 57.253 40.909 0.00 0.00 0.00 4.02
2514 5294 5.730568 GCAAGATCGGTAATGGACAATGAAC 60.731 44.000 0.00 0.00 0.00 3.18
2621 5401 3.368427 CGGACTTGTCCAAGATAAGAGCA 60.368 47.826 18.51 0.00 40.79 4.26
2671 5451 5.543714 TGAACTTCATGATGCTGCATTTTT 58.456 33.333 17.36 1.91 0.00 1.94
2700 5480 0.586802 GTCTTTGCGTGTCTTGGACC 59.413 55.000 0.00 0.00 0.00 4.46
2754 5534 4.275936 ACTGTATTGGTGAACTGAAGCAAC 59.724 41.667 0.00 0.00 37.81 4.17
2765 5545 7.261325 GTGAACTGAAGCAACTGAGATATCTA 58.739 38.462 4.89 0.00 0.00 1.98
2780 5560 5.317808 AGATATCTAAGCGCTCCAAGAGTA 58.682 41.667 12.06 9.10 31.39 2.59
2813 5593 5.485353 AGAGATTCCAGACAGTATCACCAAA 59.515 40.000 0.00 0.00 0.00 3.28
2846 5626 3.939066 AGTTTATCTGAACCTTCACGGG 58.061 45.455 0.00 0.00 36.97 5.28
2853 5633 0.037232 GAACCTTCACGGGTCTCCTG 60.037 60.000 0.00 0.00 46.60 3.86
2856 5636 1.374758 CTTCACGGGTCTCCTGCAC 60.375 63.158 0.00 0.00 32.02 4.57
2867 5647 1.547820 TCTCCTGCACTCTTAGCACTG 59.452 52.381 0.00 0.00 37.02 3.66
2988 5768 5.969423 AGTTGGTGCATTTGGATTTATCAG 58.031 37.500 0.00 0.00 0.00 2.90
3005 5785 2.951726 TCAGATTGCTCGTCTGTTGAG 58.048 47.619 11.47 0.00 42.82 3.02
3036 5816 1.768275 TGTTCTTGGAGAGCCTCACAA 59.232 47.619 0.00 0.00 34.31 3.33
3245 6025 3.077359 ACTCAAAAAGCTCCCTGAATCG 58.923 45.455 0.00 0.00 0.00 3.34
3273 6053 4.551388 CAGACTCACTCAACTCAAGTACC 58.449 47.826 0.00 0.00 0.00 3.34
3277 6057 6.722129 AGACTCACTCAACTCAAGTACCTAAT 59.278 38.462 0.00 0.00 0.00 1.73
3282 6062 8.086522 TCACTCAACTCAAGTACCTAATGTTAC 58.913 37.037 0.00 0.00 0.00 2.50
3345 6125 5.014202 GGAGCCTAAAAAGTTTGGTCCATA 58.986 41.667 13.99 0.00 33.85 2.74
3455 6235 1.447489 CCTCAGTTCGCTGCCAGAG 60.447 63.158 0.00 0.00 44.62 3.35
3520 6312 5.808042 AAACACTCATCGAATGATCCAAG 57.192 39.130 0.00 0.00 38.85 3.61
3540 6332 9.705103 ATCCAAGAAAAGATCAATTCAATCCTA 57.295 29.630 11.61 0.00 0.00 2.94
3545 6337 9.933240 AGAAAAGATCAATTCAATCCTATTCCT 57.067 29.630 11.61 0.00 0.00 3.36
3547 6339 9.933240 AAAAGATCAATTCAATCCTATTCCTCT 57.067 29.630 0.00 0.00 0.00 3.69
3560 6352 2.645838 TTCCTCTTGCTGCAGAAACT 57.354 45.000 20.43 0.00 0.00 2.66
3584 6376 5.379187 TGGGACATTCTCATCAACCATATG 58.621 41.667 0.00 0.00 0.00 1.78
3588 6380 4.274214 ACATTCTCATCAACCATATGTGCG 59.726 41.667 1.24 0.00 0.00 5.34
3595 6387 5.238432 TCATCAACCATATGTGCGGAATTAC 59.762 40.000 1.24 0.00 0.00 1.89
3629 6421 1.200948 GAGCATTTGGACTTGTCTGGC 59.799 52.381 0.61 0.00 0.00 4.85
3639 6431 4.943705 TGGACTTGTCTGGCAATTATCTTC 59.056 41.667 0.00 0.00 36.36 2.87
3669 6461 9.515226 AAAGAATACCTGAAAGTATTTGTAGCA 57.485 29.630 0.00 0.00 41.81 3.49
3708 6500 0.318762 GGACCTCTCGGGATGCATAC 59.681 60.000 0.00 0.00 38.76 2.39
3709 6501 0.039074 GACCTCTCGGGATGCATACG 60.039 60.000 15.02 15.02 38.76 3.06
3739 6534 9.289782 GGAGAAAATACCTGAAAGTATATGCAT 57.710 33.333 3.79 3.79 32.58 3.96
3848 6644 1.066257 CTTTGTGGTGTGTGCTGGC 59.934 57.895 0.00 0.00 0.00 4.85
3884 6680 3.057315 GCAGCAATCTTGTCCTGCTAAAA 60.057 43.478 12.47 0.00 44.46 1.52
4034 6830 5.215160 GTTGACAGATTTGTGGATGACAAC 58.785 41.667 0.00 0.00 44.53 3.32
4037 6833 5.535783 TGACAGATTTGTGGATGACAACATT 59.464 36.000 0.00 0.00 44.53 2.71
4125 6921 0.678048 CTTTCCAGGCTGGGTAGTGC 60.678 60.000 32.23 0.00 38.32 4.40
4145 6941 1.535462 CGCCAACTACCAAACCTGAAG 59.465 52.381 0.00 0.00 0.00 3.02
4161 6957 3.070159 CCTGAAGTCACTGGTTCTCAGAA 59.930 47.826 5.18 0.00 46.18 3.02
4232 7028 6.478016 AGGAAAACGTGTTAAACAGAGTAGAC 59.522 38.462 0.00 0.00 0.00 2.59
4234 7030 6.823678 AAACGTGTTAAACAGAGTAGACAG 57.176 37.500 0.00 0.00 0.00 3.51
4372 7171 3.767131 AGTGCTTCCTCCTCTTCTTCTAC 59.233 47.826 0.00 0.00 0.00 2.59
4374 7173 4.021016 GTGCTTCCTCCTCTTCTTCTACAA 60.021 45.833 0.00 0.00 0.00 2.41
4415 7214 1.919600 GAGACTGCAAGGGGCCTCAT 61.920 60.000 4.79 0.00 43.89 2.90
4443 7245 1.073284 GGTGGCTTCAACACTTCCCTA 59.927 52.381 0.00 0.00 38.83 3.53
4501 7303 1.649321 ACCAGCTCACCAGAGATCAA 58.351 50.000 0.00 0.00 44.98 2.57
4502 7304 2.194859 ACCAGCTCACCAGAGATCAAT 58.805 47.619 0.00 0.00 44.98 2.57
4529 7331 7.581213 ACATCTATCCTCTTTAGAGACACTG 57.419 40.000 8.32 1.72 44.74 3.66
4531 7333 7.284489 ACATCTATCCTCTTTAGAGACACTGTC 59.716 40.741 8.32 0.38 44.74 3.51
4537 7339 5.126384 CCTCTTTAGAGACACTGTCCCTAAG 59.874 48.000 11.67 8.23 44.74 2.18
4542 7344 4.941713 AGAGACACTGTCCCTAAGAGATT 58.058 43.478 5.51 0.00 32.18 2.40
4543 7345 5.337788 AGAGACACTGTCCCTAAGAGATTT 58.662 41.667 5.51 0.00 32.18 2.17
4589 7391 2.733945 GGCGAGCTCCCATCTCTC 59.266 66.667 8.47 0.00 0.00 3.20
4599 7401 4.834496 AGCTCCCATCTCTCAAGAATCTAG 59.166 45.833 0.00 0.00 34.49 2.43
4607 7409 9.206870 CCATCTCTCAAGAATCTAGAAATAAGC 57.793 37.037 0.00 0.00 34.49 3.09
4610 7412 5.986135 TCTCAAGAATCTAGAAATAAGCGGC 59.014 40.000 0.00 0.00 0.00 6.53
4642 7444 4.807304 TGTAAAGGAGTTGAACGAGAACAC 59.193 41.667 0.00 0.00 0.00 3.32
4755 7563 6.655078 AGGAACTTTGCATGAATTACAAGT 57.345 33.333 0.00 0.00 27.25 3.16
4756 7564 7.054491 AGGAACTTTGCATGAATTACAAGTT 57.946 32.000 8.27 8.27 27.25 2.66
4788 7596 0.894141 TTTGCCGGCAAGCATACAAT 59.106 45.000 37.88 0.00 43.64 2.71
4985 7794 0.111061 AGGGAATGCAGCAACTCACA 59.889 50.000 11.65 0.00 0.00 3.58
5000 7809 4.236527 ACTCACAAACCTCCAAGAACTT 57.763 40.909 0.00 0.00 0.00 2.66
5003 7812 4.199310 TCACAAACCTCCAAGAACTTGAG 58.801 43.478 14.99 10.26 42.93 3.02
5011 7820 5.998363 ACCTCCAAGAACTTGAGATTGTTAC 59.002 40.000 14.99 0.00 42.93 2.50
5035 7844 2.356741 GCCCTGGACTAAAGCAATGGTA 60.357 50.000 0.00 0.00 0.00 3.25
5069 7878 2.803030 ACAAGATGAAGCTGGCTCAT 57.197 45.000 0.00 0.00 0.00 2.90
5076 7885 6.040209 AGATGAAGCTGGCTCATATAGAAG 57.960 41.667 0.00 0.00 0.00 2.85
5097 7906 8.644374 AGAAGAGAAGGTATATATGTGTCCTC 57.356 38.462 0.00 0.00 0.00 3.71
5105 7922 5.221581 GGTATATATGTGTCCTCCCACGTTT 60.222 44.000 0.00 0.00 38.20 3.60
5118 7935 3.056107 TCCCACGTTTTCTGTCATCCTAG 60.056 47.826 0.00 0.00 0.00 3.02
5125 7942 7.168302 CACGTTTTCTGTCATCCTAGTCATATC 59.832 40.741 0.00 0.00 0.00 1.63
5150 7967 6.246420 TGCAATGCTTACTCTTTCTTCTTC 57.754 37.500 6.82 0.00 0.00 2.87
5167 7984 9.784531 TTTCTTCTTCTCTTGATGTATTCAGTT 57.215 29.630 0.00 0.00 35.27 3.16
5168 7985 9.784531 TTCTTCTTCTCTTGATGTATTCAGTTT 57.215 29.630 0.00 0.00 35.27 2.66
5169 7986 9.784531 TCTTCTTCTCTTGATGTATTCAGTTTT 57.215 29.630 0.00 0.00 35.27 2.43
5180 7997 8.289618 TGATGTATTCAGTTTTTAGTCTTGCAC 58.710 33.333 0.00 0.00 0.00 4.57
5184 8001 5.403897 TCAGTTTTTAGTCTTGCACTTCG 57.596 39.130 0.00 0.00 36.43 3.79
5209 8030 4.646492 AGTGGGTCCTTTCATGCATAAATC 59.354 41.667 0.00 0.00 0.00 2.17
5214 8035 6.268566 GGTCCTTTCATGCATAAATCTCAAC 58.731 40.000 0.00 0.00 0.00 3.18
5218 8039 8.623903 TCCTTTCATGCATAAATCTCAACATAC 58.376 33.333 0.00 0.00 0.00 2.39
5219 8040 7.588854 CCTTTCATGCATAAATCTCAACATACG 59.411 37.037 0.00 0.00 0.00 3.06
5238 8060 2.095567 ACGCATCTACTTTGCTTTGCAG 60.096 45.455 0.00 0.00 40.61 4.41
5247 8069 2.888834 TTGCTTTGCAGTTTCCCTTC 57.111 45.000 0.00 0.00 40.61 3.46
5248 8070 1.039856 TGCTTTGCAGTTTCCCTTCC 58.960 50.000 0.00 0.00 33.32 3.46
5258 8081 4.037089 GCAGTTTCCCTTCCGTTTAAAAGA 59.963 41.667 2.43 0.00 0.00 2.52
5264 8087 5.939447 TCCCTTCCGTTTAAAAGAACCTTA 58.061 37.500 2.43 0.00 0.00 2.69
5271 8094 6.924612 TCCGTTTAAAAGAACCTTATTTTGCC 59.075 34.615 2.43 0.00 34.00 4.52
5275 8099 9.710979 GTTTAAAAGAACCTTATTTTGCCAAAC 57.289 29.630 0.00 1.67 34.00 2.93
5296 12517 4.442706 ACATAATGGTAGCAGAAAGACGG 58.557 43.478 0.00 0.00 0.00 4.79
5400 12621 3.053826 AGGGCTTATTCGGTTAATCCCT 58.946 45.455 11.61 11.61 41.11 4.20
5407 12628 1.887797 TCGGTTAATCCCTCCCACAT 58.112 50.000 0.00 0.00 0.00 3.21
5482 12703 3.760684 AGCAAGTCAAAATCCATCTCCAC 59.239 43.478 0.00 0.00 0.00 4.02
5504 12725 2.511218 CCCCTCCAATCCTCTCAAATCA 59.489 50.000 0.00 0.00 0.00 2.57
5507 12728 3.549794 CTCCAATCCTCTCAAATCACCC 58.450 50.000 0.00 0.00 0.00 4.61
5512 12733 2.338809 TCCTCTCAAATCACCCTGTGT 58.661 47.619 0.00 0.00 34.79 3.72
5513 12734 2.303022 TCCTCTCAAATCACCCTGTGTC 59.697 50.000 0.00 0.00 34.79 3.67
5514 12735 2.038952 CCTCTCAAATCACCCTGTGTCA 59.961 50.000 0.00 0.00 34.79 3.58
5527 12748 2.749621 CCTGTGTCAGGTCCATTTAAGC 59.250 50.000 7.55 0.00 45.82 3.09
5528 12749 2.749621 CTGTGTCAGGTCCATTTAAGCC 59.250 50.000 0.00 0.00 0.00 4.35
5529 12750 2.092323 GTGTCAGGTCCATTTAAGCCC 58.908 52.381 0.00 0.00 0.00 5.19
5531 12752 2.092323 GTCAGGTCCATTTAAGCCCAC 58.908 52.381 0.00 0.00 0.00 4.61
5532 12753 1.094785 CAGGTCCATTTAAGCCCACG 58.905 55.000 0.00 0.00 0.00 4.94
5533 12754 0.034477 AGGTCCATTTAAGCCCACGG 60.034 55.000 0.00 0.00 0.00 4.94
5544 12765 3.151710 CCCACGGCCCATACGAGA 61.152 66.667 0.00 0.00 34.93 4.04
5545 12766 2.507854 CCCACGGCCCATACGAGAT 61.508 63.158 0.00 0.00 34.93 2.75
5547 12768 1.441729 CACGGCCCATACGAGATGT 59.558 57.895 0.00 0.00 34.93 3.06
5548 12769 0.875908 CACGGCCCATACGAGATGTG 60.876 60.000 0.00 0.00 34.93 3.21
5549 12770 1.956170 CGGCCCATACGAGATGTGC 60.956 63.158 0.00 0.00 0.00 4.57
5550 12771 1.598130 GGCCCATACGAGATGTGCC 60.598 63.158 11.31 11.31 35.56 5.01
5552 12773 0.463654 GCCCATACGAGATGTGCCAA 60.464 55.000 0.00 0.00 0.00 4.52
5553 12774 1.815408 GCCCATACGAGATGTGCCAAT 60.815 52.381 0.00 0.00 0.00 3.16
5555 12776 2.549754 CCCATACGAGATGTGCCAATTC 59.450 50.000 0.00 0.00 0.00 2.17
5557 12778 1.934589 TACGAGATGTGCCAATTCGG 58.065 50.000 0.00 0.00 35.72 4.30
5574 12795 2.759560 GCCCATCAATGGCCCGTT 60.760 61.111 0.00 0.00 46.70 4.44
5575 12796 1.454847 GCCCATCAATGGCCCGTTA 60.455 57.895 0.00 0.00 46.70 3.18
5577 12798 1.479709 CCCATCAATGGCCCGTTAAA 58.520 50.000 0.00 0.00 46.70 1.52
5583 12804 4.448537 TCAATGGCCCGTTAAAGATTTG 57.551 40.909 0.00 0.00 0.00 2.32
5585 12806 4.082463 TCAATGGCCCGTTAAAGATTTGAC 60.082 41.667 0.00 0.00 0.00 3.18
5586 12807 2.865079 TGGCCCGTTAAAGATTTGACA 58.135 42.857 0.00 0.00 0.00 3.58
5589 12810 2.554893 GCCCGTTAAAGATTTGACACCA 59.445 45.455 1.83 0.00 0.00 4.17
5592 12813 5.160641 CCCGTTAAAGATTTGACACCATTG 58.839 41.667 1.83 0.00 0.00 2.82
5593 12814 4.621034 CCGTTAAAGATTTGACACCATTGC 59.379 41.667 1.83 0.00 0.00 3.56
5595 12816 5.343058 CGTTAAAGATTTGACACCATTGCAG 59.657 40.000 1.83 0.00 0.00 4.41
5599 12820 0.758310 TTTGACACCATTGCAGCCCA 60.758 50.000 0.00 0.00 0.00 5.36
5603 12824 2.048023 CACCATTGCAGCCCATCGT 61.048 57.895 0.00 0.00 0.00 3.73
5604 12825 1.750399 ACCATTGCAGCCCATCGTC 60.750 57.895 0.00 0.00 0.00 4.20
5606 12827 1.721664 CCATTGCAGCCCATCGTCAG 61.722 60.000 0.00 0.00 0.00 3.51
5607 12828 1.028330 CATTGCAGCCCATCGTCAGT 61.028 55.000 0.00 0.00 0.00 3.41
5608 12829 0.322816 ATTGCAGCCCATCGTCAGTT 60.323 50.000 0.00 0.00 0.00 3.16
5609 12830 0.955428 TTGCAGCCCATCGTCAGTTC 60.955 55.000 0.00 0.00 0.00 3.01
5610 12831 2.456119 GCAGCCCATCGTCAGTTCG 61.456 63.158 0.00 0.00 0.00 3.95
5611 12832 1.215382 CAGCCCATCGTCAGTTCGA 59.785 57.895 0.00 0.00 43.86 3.71
5612 12833 0.803768 CAGCCCATCGTCAGTTCGAG 60.804 60.000 0.00 0.00 43.00 4.04
5613 12834 2.167861 GCCCATCGTCAGTTCGAGC 61.168 63.158 0.00 0.00 43.00 5.03
5614 12835 1.519455 CCCATCGTCAGTTCGAGCC 60.519 63.158 0.00 0.00 43.00 4.70
5615 12836 1.519455 CCATCGTCAGTTCGAGCCC 60.519 63.158 0.00 0.00 43.00 5.19
5616 12837 1.874019 CATCGTCAGTTCGAGCCCG 60.874 63.158 0.00 0.00 43.00 6.13
5617 12838 2.341101 ATCGTCAGTTCGAGCCCGT 61.341 57.895 0.00 0.00 43.00 5.28
5618 12839 1.874345 ATCGTCAGTTCGAGCCCGTT 61.874 55.000 0.00 0.00 43.00 4.44
5619 12840 1.210931 CGTCAGTTCGAGCCCGTTA 59.789 57.895 0.00 0.00 37.05 3.18
5621 12842 1.066136 GTCAGTTCGAGCCCGTTAAC 58.934 55.000 0.00 0.00 37.05 2.01
5622 12843 0.675083 TCAGTTCGAGCCCGTTAACA 59.325 50.000 6.39 0.00 37.05 2.41
5624 12845 0.669625 AGTTCGAGCCCGTTAACAGC 60.670 55.000 6.39 7.92 37.05 4.40
5625 12846 1.375013 TTCGAGCCCGTTAACAGCC 60.375 57.895 12.66 5.42 37.05 4.85
5627 12848 2.818274 GAGCCCGTTAACAGCCCG 60.818 66.667 12.66 0.00 0.00 6.13
5631 12852 1.145377 CCCGTTAACAGCCCGCTAT 59.855 57.895 6.39 0.00 0.00 2.97
5633 12854 1.001633 CCCGTTAACAGCCCGCTATAT 59.998 52.381 6.39 0.00 0.00 0.86
5634 12855 2.231964 CCCGTTAACAGCCCGCTATATA 59.768 50.000 6.39 0.00 0.00 0.86
5635 12856 3.118884 CCCGTTAACAGCCCGCTATATAT 60.119 47.826 6.39 0.00 0.00 0.86
5636 12857 4.501071 CCGTTAACAGCCCGCTATATATT 58.499 43.478 6.39 0.00 0.00 1.28
5637 12858 4.933400 CCGTTAACAGCCCGCTATATATTT 59.067 41.667 6.39 0.00 0.00 1.40
5638 12859 5.163893 CCGTTAACAGCCCGCTATATATTTG 60.164 44.000 6.39 0.00 0.00 2.32
5639 12860 5.163893 CGTTAACAGCCCGCTATATATTTGG 60.164 44.000 6.39 0.00 0.00 3.28
5640 12861 3.350219 ACAGCCCGCTATATATTTGGG 57.650 47.619 10.71 10.71 43.02 4.12
5644 12865 3.627395 CCCGCTATATATTTGGGCTCA 57.373 47.619 4.27 0.00 32.09 4.26
5645 12866 3.950397 CCCGCTATATATTTGGGCTCAA 58.050 45.455 0.00 0.00 32.09 3.02
5646 12867 4.526970 CCCGCTATATATTTGGGCTCAAT 58.473 43.478 0.00 0.00 32.09 2.57
5647 12868 5.680619 CCCGCTATATATTTGGGCTCAATA 58.319 41.667 0.00 0.00 32.09 1.90
5649 12870 6.428159 CCCGCTATATATTTGGGCTCAATATC 59.572 42.308 0.00 0.00 32.09 1.63
5650 12871 6.146184 CCGCTATATATTTGGGCTCAATATCG 59.854 42.308 0.00 0.00 32.28 2.92
5651 12872 6.146184 CGCTATATATTTGGGCTCAATATCGG 59.854 42.308 0.00 0.00 32.28 4.18
5652 12873 6.073003 GCTATATATTTGGGCTCAATATCGGC 60.073 42.308 0.00 0.72 32.28 5.54
5653 12874 1.620822 ATTTGGGCTCAATATCGGCC 58.379 50.000 0.00 0.00 45.34 6.13
5656 12877 4.898607 GGCTCAATATCGGCCCAA 57.101 55.556 0.00 0.00 39.96 4.12
5657 12878 3.346426 GGCTCAATATCGGCCCAAT 57.654 52.632 0.00 0.00 39.96 3.16
5658 12879 0.883833 GGCTCAATATCGGCCCAATG 59.116 55.000 0.00 0.00 39.96 2.82
5659 12880 1.545428 GGCTCAATATCGGCCCAATGA 60.545 52.381 0.00 0.00 39.96 2.57
5660 12881 1.808945 GCTCAATATCGGCCCAATGAG 59.191 52.381 12.06 12.06 37.83 2.90
5661 12882 2.550855 GCTCAATATCGGCCCAATGAGA 60.551 50.000 17.84 1.11 37.14 3.27
5662 12883 3.871463 GCTCAATATCGGCCCAATGAGAT 60.871 47.826 17.84 7.99 37.14 2.75
5663 12884 4.330250 CTCAATATCGGCCCAATGAGATT 58.670 43.478 11.29 3.29 37.14 2.40
5664 12885 4.728772 TCAATATCGGCCCAATGAGATTT 58.271 39.130 0.00 0.00 0.00 2.17
5665 12886 4.761739 TCAATATCGGCCCAATGAGATTTC 59.238 41.667 0.00 0.00 0.00 2.17
5666 12887 1.597742 ATCGGCCCAATGAGATTTCG 58.402 50.000 0.00 0.00 0.00 3.46
5667 12888 0.463654 TCGGCCCAATGAGATTTCGG 60.464 55.000 0.00 0.00 0.00 4.30
5668 12889 1.735973 GGCCCAATGAGATTTCGGC 59.264 57.895 0.00 0.00 35.39 5.54
5669 12890 0.753111 GGCCCAATGAGATTTCGGCT 60.753 55.000 0.00 0.00 36.07 5.52
5670 12891 1.106285 GCCCAATGAGATTTCGGCTT 58.894 50.000 0.00 0.00 34.04 4.35
5671 12892 1.202336 GCCCAATGAGATTTCGGCTTG 60.202 52.381 0.00 0.00 34.04 4.01
5674 12895 3.694072 CCCAATGAGATTTCGGCTTGTTA 59.306 43.478 0.00 0.00 0.00 2.41
5675 12896 4.157656 CCCAATGAGATTTCGGCTTGTTAA 59.842 41.667 0.00 0.00 0.00 2.01
5677 12898 4.600012 ATGAGATTTCGGCTTGTTAACG 57.400 40.909 0.26 0.00 0.00 3.18
5678 12899 2.739913 TGAGATTTCGGCTTGTTAACGG 59.260 45.455 0.26 0.00 0.00 4.44
5679 12900 1.467342 AGATTTCGGCTTGTTAACGGC 59.533 47.619 12.93 12.93 0.00 5.68
5680 12901 0.524414 ATTTCGGCTTGTTAACGGCC 59.476 50.000 23.96 23.96 42.18 6.13
5681 12902 1.517210 TTTCGGCTTGTTAACGGCCC 61.517 55.000 26.16 14.46 42.58 5.80
5682 12903 2.670251 CGGCTTGTTAACGGCCCA 60.670 61.111 26.16 0.00 42.58 5.36
5683 12904 2.043980 CGGCTTGTTAACGGCCCAT 61.044 57.895 26.16 0.00 42.58 4.00
5685 12906 0.606096 GGCTTGTTAACGGCCCATTT 59.394 50.000 23.59 0.00 39.96 2.32
5686 12907 1.819903 GGCTTGTTAACGGCCCATTTA 59.180 47.619 23.59 0.00 39.96 1.40
5688 12909 3.118920 GGCTTGTTAACGGCCCATTTAAT 60.119 43.478 23.59 0.00 39.96 1.40
5689 12910 3.862845 GCTTGTTAACGGCCCATTTAATG 59.137 43.478 10.94 0.00 0.00 1.90
5707 12928 1.570803 TGGATGGGCCAATTTTCAGG 58.429 50.000 11.89 0.00 45.87 3.86
5708 12929 1.078490 TGGATGGGCCAATTTTCAGGA 59.922 47.619 11.89 0.00 45.87 3.86
5710 12931 2.103601 GGATGGGCCAATTTTCAGGATG 59.896 50.000 11.89 0.00 36.34 3.51
5711 12932 2.323999 TGGGCCAATTTTCAGGATGT 57.676 45.000 2.13 0.00 37.40 3.06
5712 12933 3.464720 TGGGCCAATTTTCAGGATGTA 57.535 42.857 2.13 0.00 37.40 2.29
5713 12934 3.096092 TGGGCCAATTTTCAGGATGTAC 58.904 45.455 2.13 0.00 37.40 2.90
5714 12935 3.096092 GGGCCAATTTTCAGGATGTACA 58.904 45.455 4.39 0.00 37.40 2.90
5715 12936 3.706086 GGGCCAATTTTCAGGATGTACAT 59.294 43.478 8.43 8.43 37.40 2.29
5716 12937 4.202151 GGGCCAATTTTCAGGATGTACATC 60.202 45.833 24.95 24.95 37.40 3.06
5717 12938 4.646492 GGCCAATTTTCAGGATGTACATCT 59.354 41.667 29.87 16.34 37.92 2.90
5718 12939 5.127682 GGCCAATTTTCAGGATGTACATCTT 59.872 40.000 29.87 22.81 37.92 2.40
5720 12941 6.753744 GCCAATTTTCAGGATGTACATCTTTC 59.246 38.462 29.87 16.78 37.92 2.62
5722 12943 6.683974 ATTTTCAGGATGTACATCTTTCGG 57.316 37.500 29.87 16.95 37.92 4.30
5723 12944 3.179443 TCAGGATGTACATCTTTCGGC 57.821 47.619 29.87 15.50 37.92 5.54
5724 12945 2.158957 TCAGGATGTACATCTTTCGGCC 60.159 50.000 29.87 15.75 37.92 6.13
5725 12946 2.119495 AGGATGTACATCTTTCGGCCT 58.881 47.619 29.87 17.56 37.92 5.19
5726 12947 2.505819 AGGATGTACATCTTTCGGCCTT 59.494 45.455 29.87 1.19 37.92 4.35
5727 12948 3.054361 AGGATGTACATCTTTCGGCCTTT 60.054 43.478 29.87 0.00 37.92 3.11
5728 12949 3.694566 GGATGTACATCTTTCGGCCTTTT 59.305 43.478 29.87 0.00 37.92 2.27
5729 12950 4.879545 GGATGTACATCTTTCGGCCTTTTA 59.120 41.667 29.87 0.00 37.92 1.52
5730 12951 5.007724 GGATGTACATCTTTCGGCCTTTTAG 59.992 44.000 29.87 0.00 37.92 1.85
5731 12952 3.687698 TGTACATCTTTCGGCCTTTTAGC 59.312 43.478 0.00 0.00 0.00 3.09
5732 12953 1.737793 ACATCTTTCGGCCTTTTAGCG 59.262 47.619 0.00 0.00 0.00 4.26
5734 12955 1.435577 TCTTTCGGCCTTTTAGCGAC 58.564 50.000 0.00 0.00 0.00 5.19
5736 12957 0.956902 TTTCGGCCTTTTAGCGACCC 60.957 55.000 0.00 0.00 0.00 4.46
5738 12959 1.451387 CGGCCTTTTAGCGACCCAT 60.451 57.895 0.00 0.00 0.00 4.00
5739 12960 1.029947 CGGCCTTTTAGCGACCCATT 61.030 55.000 0.00 0.00 0.00 3.16
5740 12961 1.182667 GGCCTTTTAGCGACCCATTT 58.817 50.000 0.00 0.00 0.00 2.32
5742 12963 2.756207 GGCCTTTTAGCGACCCATTTAA 59.244 45.455 0.00 0.00 0.00 1.52
5743 12964 3.193903 GGCCTTTTAGCGACCCATTTAAA 59.806 43.478 0.00 0.00 0.00 1.52
5744 12965 4.142026 GGCCTTTTAGCGACCCATTTAAAT 60.142 41.667 0.00 0.00 0.00 1.40
5745 12966 4.803613 GCCTTTTAGCGACCCATTTAAATG 59.196 41.667 19.40 19.40 36.17 2.32
5746 12967 5.623596 GCCTTTTAGCGACCCATTTAAATGT 60.624 40.000 23.24 8.92 34.60 2.71
5747 12968 6.394809 CCTTTTAGCGACCCATTTAAATGTT 58.605 36.000 23.24 12.17 34.60 2.71
5748 12969 6.310224 CCTTTTAGCGACCCATTTAAATGTTG 59.690 38.462 23.24 16.97 34.60 3.33
5749 12970 3.866883 AGCGACCCATTTAAATGTTGG 57.133 42.857 23.24 20.05 34.60 3.77
5758 12979 7.552458 CCCATTTAAATGTTGGGCTAATTTC 57.448 36.000 23.24 0.00 43.45 2.17
5760 12981 6.257630 CCATTTAAATGTTGGGCTAATTTCCG 59.742 38.462 23.24 2.39 34.60 4.30
5761 12982 3.885724 AAATGTTGGGCTAATTTCCGG 57.114 42.857 0.00 0.00 0.00 5.14
5762 12983 1.111277 ATGTTGGGCTAATTTCCGGC 58.889 50.000 0.00 0.00 0.00 6.13
5763 12984 0.968393 TGTTGGGCTAATTTCCGGCC 60.968 55.000 0.00 0.00 45.34 6.13
5776 12997 3.047877 CGGCCCGGTGTGTCTTTC 61.048 66.667 0.00 0.00 0.00 2.62
5777 12998 2.112297 GGCCCGGTGTGTCTTTCA 59.888 61.111 0.00 0.00 0.00 2.69
5778 12999 1.966451 GGCCCGGTGTGTCTTTCAG 60.966 63.158 0.00 0.00 0.00 3.02
5780 13001 1.966451 CCCGGTGTGTCTTTCAGCC 60.966 63.158 0.00 0.00 0.00 4.85
5781 13002 1.071471 CCGGTGTGTCTTTCAGCCT 59.929 57.895 0.00 0.00 0.00 4.58
5782 13003 1.230635 CCGGTGTGTCTTTCAGCCTG 61.231 60.000 0.00 0.00 0.00 4.85
5783 13004 0.532862 CGGTGTGTCTTTCAGCCTGT 60.533 55.000 0.00 0.00 0.00 4.00
5784 13005 1.680338 GGTGTGTCTTTCAGCCTGTT 58.320 50.000 0.00 0.00 0.00 3.16
5786 13007 2.288666 GTGTGTCTTTCAGCCTGTTGA 58.711 47.619 0.00 0.00 0.00 3.18
5787 13008 2.032178 GTGTGTCTTTCAGCCTGTTGAC 59.968 50.000 0.00 0.00 0.00 3.18
5788 13009 1.261619 GTGTCTTTCAGCCTGTTGACG 59.738 52.381 0.00 0.00 0.00 4.35
5789 13010 0.868406 GTCTTTCAGCCTGTTGACGG 59.132 55.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.849813 TGTGAGACAAGGGATCATGAAT 57.150 40.909 0.00 0.00 0.00 2.57
201 202 4.202161 CGTATATCAGTCACCTTTGGCTCT 60.202 45.833 0.00 0.00 34.53 4.09
236 237 7.517254 TCCCAATGATTTCTATCTCCAGGATTA 59.483 37.037 0.00 0.00 35.98 1.75
239 240 5.226803 TCCCAATGATTTCTATCTCCAGGA 58.773 41.667 0.00 0.00 0.00 3.86
248 249 6.209774 TCCTTAGTCCTCCCAATGATTTCTA 58.790 40.000 0.00 0.00 0.00 2.10
250 251 5.131142 TCTCCTTAGTCCTCCCAATGATTTC 59.869 44.000 0.00 0.00 0.00 2.17
268 269 9.559496 AGAAGCCAATATTATATCTCTCTCCTT 57.441 33.333 0.00 0.00 0.00 3.36
297 298 9.443283 GTGATATCTTTTGTCATGCTATCAAAC 57.557 33.333 3.98 0.00 32.08 2.93
299 300 8.735692 TGTGATATCTTTTGTCATGCTATCAA 57.264 30.769 3.98 0.00 0.00 2.57
401 403 4.273148 ACCCACACTTGAGAGTATTCAC 57.727 45.455 0.00 0.00 33.90 3.18
478 480 8.873830 CGCACTCTCTTTATCTTTCTTTGATAA 58.126 33.333 0.00 0.00 35.40 1.75
484 486 6.586844 GTGTACGCACTCTCTTTATCTTTCTT 59.413 38.462 0.39 0.00 42.13 2.52
517 519 8.469309 TTTTCAAGGGAATTATGGATCATCTC 57.531 34.615 0.00 0.00 31.93 2.75
594 596 7.223584 TCAGTTCTTCCAAATGAGACATGTTA 58.776 34.615 0.00 0.00 0.00 2.41
773 776 8.041323 TGTTCCTTATCACCTCTAGATTCAAAC 58.959 37.037 0.00 0.00 0.00 2.93
884 887 1.358787 TCCCATTGACCAGGCTTCATT 59.641 47.619 0.00 0.00 0.00 2.57
951 954 6.288294 TGCAAGTACTTGTGTAGAAGATGTT 58.712 36.000 30.90 0.00 42.31 2.71
969 972 4.904241 AGCTTAACTTCAGAGATGCAAGT 58.096 39.130 0.00 0.00 31.48 3.16
1113 1116 5.812642 ACTAATGTATTTCTCACCAAGCTCG 59.187 40.000 0.00 0.00 0.00 5.03
1270 1318 6.997655 TGTGATATGCTAGTCCAAATCCTAG 58.002 40.000 0.00 0.00 34.95 3.02
1273 1321 5.858381 TCTGTGATATGCTAGTCCAAATCC 58.142 41.667 0.00 0.00 0.00 3.01
1346 1399 5.184671 TGGCTTGCATTTGTGTGTATCAATA 59.815 36.000 0.00 0.00 0.00 1.90
1367 1420 4.401925 AGCAAATCTAGGGATATGTTGGC 58.598 43.478 0.00 0.00 0.00 4.52
1394 1447 9.479549 ACAATCAAATATTCTAGGGATGTGTTT 57.520 29.630 0.00 0.00 0.00 2.83
1397 1450 9.123902 TCAACAATCAAATATTCTAGGGATGTG 57.876 33.333 0.00 0.00 0.00 3.21
1419 1479 7.602517 ACTAGAATGTTGCAGTAGAATCAAC 57.397 36.000 0.00 0.00 40.17 3.18
1438 1498 7.067615 TGTGCATTGACCTTTTGTTTTACTAGA 59.932 33.333 0.00 0.00 0.00 2.43
1460 1520 0.670162 ACCTCAACTGTGCATTGTGC 59.330 50.000 0.00 0.00 45.29 4.57
1465 1525 4.357918 ACTAAAGACCTCAACTGTGCAT 57.642 40.909 0.00 0.00 0.00 3.96
1466 1526 3.838244 ACTAAAGACCTCAACTGTGCA 57.162 42.857 0.00 0.00 0.00 4.57
1467 1527 3.184581 CGAACTAAAGACCTCAACTGTGC 59.815 47.826 0.00 0.00 0.00 4.57
1468 1528 3.184581 GCGAACTAAAGACCTCAACTGTG 59.815 47.826 0.00 0.00 0.00 3.66
1469 1529 3.181469 TGCGAACTAAAGACCTCAACTGT 60.181 43.478 0.00 0.00 0.00 3.55
1470 1530 3.390135 TGCGAACTAAAGACCTCAACTG 58.610 45.455 0.00 0.00 0.00 3.16
1471 1531 3.746045 TGCGAACTAAAGACCTCAACT 57.254 42.857 0.00 0.00 0.00 3.16
1472 1532 3.371285 GGATGCGAACTAAAGACCTCAAC 59.629 47.826 0.00 0.00 0.00 3.18
1473 1533 3.007506 TGGATGCGAACTAAAGACCTCAA 59.992 43.478 0.00 0.00 0.00 3.02
1474 1534 2.565391 TGGATGCGAACTAAAGACCTCA 59.435 45.455 0.00 0.00 0.00 3.86
1555 1847 4.816385 CGCCCAAGTAATCATGTTAGTCAT 59.184 41.667 0.00 0.00 37.22 3.06
1604 1897 6.828785 AGCCGGATTCTAAAACATTATTCAGT 59.171 34.615 5.05 0.00 0.00 3.41
1605 1898 7.264373 AGCCGGATTCTAAAACATTATTCAG 57.736 36.000 5.05 0.00 0.00 3.02
1607 1902 8.926715 AAAAGCCGGATTCTAAAACATTATTC 57.073 30.769 4.89 0.00 0.00 1.75
1612 1907 7.696992 TTCTAAAAGCCGGATTCTAAAACAT 57.303 32.000 4.89 0.00 0.00 2.71
1652 1947 9.483916 TGAACCGAAATATGTTGGTGTATATAG 57.516 33.333 5.49 0.00 34.26 1.31
1653 1948 9.263538 GTGAACCGAAATATGTTGGTGTATATA 57.736 33.333 5.49 0.00 34.26 0.86
1754 2049 5.642063 GTGGATGGAGATAGTTTTGTTTCGA 59.358 40.000 0.00 0.00 0.00 3.71
1755 2050 5.411361 TGTGGATGGAGATAGTTTTGTTTCG 59.589 40.000 0.00 0.00 0.00 3.46
1760 2055 5.491070 TCTGTGTGGATGGAGATAGTTTTG 58.509 41.667 0.00 0.00 0.00 2.44
1762 2057 5.762179 TTCTGTGTGGATGGAGATAGTTT 57.238 39.130 0.00 0.00 0.00 2.66
1791 2086 6.414890 CGAGACACTTCTGTTTCTTTTCTTC 58.585 40.000 0.00 0.00 33.80 2.87
1794 2089 4.809426 TCCGAGACACTTCTGTTTCTTTTC 59.191 41.667 0.00 0.00 33.80 2.29
1808 2503 6.861572 TCGATAATTGTGATAATCCGAGACAC 59.138 38.462 0.00 0.00 0.00 3.67
1818 2513 4.764823 GGCCCCATTCGATAATTGTGATAA 59.235 41.667 0.00 0.00 0.00 1.75
1819 2514 4.331968 GGCCCCATTCGATAATTGTGATA 58.668 43.478 0.00 0.00 0.00 2.15
1820 2515 3.157087 GGCCCCATTCGATAATTGTGAT 58.843 45.455 0.00 0.00 0.00 3.06
1821 2516 2.582052 GGCCCCATTCGATAATTGTGA 58.418 47.619 0.00 0.00 0.00 3.58
1825 2520 1.271379 CCTCGGCCCCATTCGATAATT 60.271 52.381 0.00 0.00 34.77 1.40
1828 2523 2.879233 GCCTCGGCCCCATTCGATA 61.879 63.158 0.00 0.00 34.77 2.92
1931 3291 3.254093 TCATCCTCGCCTTTAGGGATA 57.746 47.619 0.00 0.00 36.88 2.59
1939 3299 2.087646 GCTTTTCTTCATCCTCGCCTT 58.912 47.619 0.00 0.00 0.00 4.35
1991 3351 5.273170 TCGTGAGAAAAGAGCACAAAAATG 58.727 37.500 0.00 0.00 37.03 2.32
2001 3361 3.458189 ACCAACACTCGTGAGAAAAGAG 58.542 45.455 3.44 0.00 41.32 2.85
2014 3374 7.404671 AAATTCAGAAACAACTACCAACACT 57.595 32.000 0.00 0.00 0.00 3.55
2043 3417 6.971726 ACCGGGGAAGGAAAATATTTATTC 57.028 37.500 6.32 6.64 34.73 1.75
2049 3423 3.271225 AGGAAACCGGGGAAGGAAAATAT 59.729 43.478 6.32 0.00 34.73 1.28
2131 3526 3.568007 GTGATGGTTGTTTTCTGCTACCA 59.432 43.478 0.00 0.00 42.57 3.25
2133 3528 4.829064 TGTGATGGTTGTTTTCTGCTAC 57.171 40.909 0.00 0.00 0.00 3.58
2138 3533 6.219417 TCAATGTTGTGATGGTTGTTTTCT 57.781 33.333 0.00 0.00 0.00 2.52
2139 3534 6.900568 TTCAATGTTGTGATGGTTGTTTTC 57.099 33.333 0.00 0.00 0.00 2.29
2155 3550 6.074544 CCATTGCAAAATGGTTTTCAATGT 57.925 33.333 17.29 0.00 43.64 2.71
2166 3561 1.197264 CGGCCAAACCATTGCAAAATG 59.803 47.619 1.71 0.00 39.03 2.32
2177 3572 3.013921 TCATATCTGAAACGGCCAAACC 58.986 45.455 2.24 0.00 0.00 3.27
2178 3573 4.695217 TTCATATCTGAAACGGCCAAAC 57.305 40.909 2.24 0.00 38.43 2.93
2214 3609 7.054124 TGTTTAGGTTCTGAACTTTGAGTCAT 58.946 34.615 19.05 0.00 32.33 3.06
2215 3610 6.411376 TGTTTAGGTTCTGAACTTTGAGTCA 58.589 36.000 19.05 8.33 32.33 3.41
2232 3628 1.478105 GCCTTTGCTCCCATGTTTAGG 59.522 52.381 0.00 0.00 33.53 2.69
2242 3638 2.069165 ATATCCCCGGCCTTTGCTCC 62.069 60.000 0.00 0.00 37.74 4.70
2280 3687 0.916086 TGTCCCACGCTATTTCCCAT 59.084 50.000 0.00 0.00 0.00 4.00
2318 5092 9.034800 ACCATTTTATGCATAACCCCTATATTG 57.965 33.333 18.70 8.75 0.00 1.90
2323 5097 8.282982 TCTAAACCATTTTATGCATAACCCCTA 58.717 33.333 18.70 1.04 0.00 3.53
2407 5187 4.147321 AGTCTGCAACCAAATCATTCAGT 58.853 39.130 0.00 0.00 0.00 3.41
2419 5199 5.586243 TCATATAGCTCAAAAGTCTGCAACC 59.414 40.000 0.00 0.00 0.00 3.77
2501 5281 7.280652 CCAACAAAAAGAAGTTCATTGTCCATT 59.719 33.333 16.90 4.66 33.39 3.16
2621 5401 8.795842 ATTTGTCACAATCCATAAAATGCAAT 57.204 26.923 0.00 0.00 0.00 3.56
2671 5451 2.076100 CACGCAAAGACTTGGCAGATA 58.924 47.619 14.91 0.00 32.76 1.98
2700 5480 5.235186 GCTTATGTATGGTGCACTCACTTAG 59.765 44.000 17.98 10.92 42.72 2.18
2754 5534 4.217334 TCTTGGAGCGCTTAGATATCTCAG 59.783 45.833 13.26 9.12 0.00 3.35
2765 5545 1.618837 TCTTGTACTCTTGGAGCGCTT 59.381 47.619 13.26 0.00 32.04 4.68
2780 5560 5.719085 ACTGTCTGGAATCTCTGTATCTTGT 59.281 40.000 0.00 0.00 0.00 3.16
2843 5623 0.457851 CTAAGAGTGCAGGAGACCCG 59.542 60.000 0.00 0.00 37.58 5.28
2846 5626 1.548269 AGTGCTAAGAGTGCAGGAGAC 59.452 52.381 0.00 0.00 41.41 3.36
2853 5633 0.036952 TCTGGCAGTGCTAAGAGTGC 60.037 55.000 16.11 0.00 40.94 4.40
2856 5636 1.547820 TGACTCTGGCAGTGCTAAGAG 59.452 52.381 30.47 30.47 41.48 2.85
2953 5733 2.230660 GCACCAACTTTTGTAGCCTCT 58.769 47.619 0.00 0.00 0.00 3.69
2988 5768 1.066858 TCCCTCAACAGACGAGCAATC 60.067 52.381 0.00 0.00 0.00 2.67
3005 5785 5.359194 TCTCCAAGAACACTGATATTCCC 57.641 43.478 0.00 0.00 0.00 3.97
3245 6025 1.202698 AGTTGAGTGAGTCTGCCCAAC 60.203 52.381 0.00 0.00 35.46 3.77
3282 6062 1.533625 TTCAAATCTCGCCAACCTGG 58.466 50.000 0.00 0.00 41.55 4.45
3306 6086 1.067354 GCTCCCAAAACATCTTGGCAG 60.067 52.381 0.00 0.00 43.97 4.85
3316 6096 4.814234 CCAAACTTTTTAGGCTCCCAAAAC 59.186 41.667 0.00 0.00 0.00 2.43
3345 6125 9.962809 AACCATCCAACAAAATGATAAATCAAT 57.037 25.926 0.00 0.00 40.69 2.57
3358 6138 5.360999 TGTACACAATCAACCATCCAACAAA 59.639 36.000 0.00 0.00 0.00 2.83
3455 6235 0.250513 ACCGAAGCTTGGTCAGATCC 59.749 55.000 2.10 0.00 33.35 3.36
3540 6332 3.151912 AGTTTCTGCAGCAAGAGGAAT 57.848 42.857 9.47 0.00 0.00 3.01
3542 6334 2.224606 CAAGTTTCTGCAGCAAGAGGA 58.775 47.619 9.47 0.00 0.00 3.71
3544 6336 1.268899 CCCAAGTTTCTGCAGCAAGAG 59.731 52.381 9.47 0.00 0.00 2.85
3545 6337 1.133823 TCCCAAGTTTCTGCAGCAAGA 60.134 47.619 9.47 0.00 0.00 3.02
3546 6338 1.000938 GTCCCAAGTTTCTGCAGCAAG 60.001 52.381 9.47 0.00 0.00 4.01
3547 6339 1.032014 GTCCCAAGTTTCTGCAGCAA 58.968 50.000 9.47 0.30 0.00 3.91
3560 6352 3.805066 TGGTTGATGAGAATGTCCCAA 57.195 42.857 0.00 0.00 0.00 4.12
3629 6421 9.618890 TCAGGTATTCTTTCCAGAAGATAATTG 57.381 33.333 0.00 0.00 42.53 2.32
3639 6431 9.014297 ACAAATACTTTCAGGTATTCTTTCCAG 57.986 33.333 0.00 0.00 40.27 3.86
3669 6461 3.384146 TCCAATGTGTGCAGTTTTGTCAT 59.616 39.130 0.00 0.00 0.00 3.06
3708 6500 6.313744 ACTTTCAGGTATTTTCTCCAAACG 57.686 37.500 0.00 0.00 0.00 3.60
3739 6534 9.569122 AATAAAGAAACTTCAAGCTACCAACTA 57.431 29.630 0.00 0.00 0.00 2.24
3848 6644 5.004448 AGATTGCTGCTAGATCCATCATTG 58.996 41.667 0.00 0.00 0.00 2.82
3884 6680 1.707427 AGCTCAAAAGGATCTGTGGGT 59.293 47.619 0.00 0.00 0.00 4.51
3963 6759 2.224784 GCCAAATGCTTTGCTTTTCCAG 59.775 45.455 1.33 0.00 39.31 3.86
3984 6780 3.134458 GAGTCCACTCCTGTTTCAACTG 58.866 50.000 0.00 0.00 37.02 3.16
3994 6790 1.417890 CAACACCTTGAGTCCACTCCT 59.582 52.381 4.25 0.00 42.20 3.69
4034 6830 4.448732 GGCACTAGTTTTTCCAGCAAAATG 59.551 41.667 0.00 0.00 33.82 2.32
4037 6833 3.295973 AGGCACTAGTTTTTCCAGCAAA 58.704 40.909 0.00 0.00 36.02 3.68
4125 6921 1.535462 CTTCAGGTTTGGTAGTTGGCG 59.465 52.381 0.00 0.00 0.00 5.69
4145 6941 4.333926 GCCATATTTCTGAGAACCAGTGAC 59.666 45.833 0.00 0.00 43.38 3.67
4161 6957 5.306160 CCCATTCTTCCAGATTTGCCATATT 59.694 40.000 0.00 0.00 0.00 1.28
4181 6977 2.505819 GGTGGAGTATGAAGTGTCCCAT 59.494 50.000 0.00 0.00 0.00 4.00
4284 7080 4.711399 TCACTGCATCTTATCTCCCATTG 58.289 43.478 0.00 0.00 0.00 2.82
4372 7171 8.827177 TCTAACTGACAACCAAGTAGTTATTG 57.173 34.615 0.00 5.36 34.47 1.90
4374 7173 8.305317 GTCTCTAACTGACAACCAAGTAGTTAT 58.695 37.037 0.00 0.00 34.47 1.89
4415 7214 1.144708 TGTTGAAGCCACCTCCATTGA 59.855 47.619 0.00 0.00 0.00 2.57
4443 7245 5.970640 TGGTAATATCCAAAGAAGGGAGTCT 59.029 40.000 0.00 0.00 37.96 3.24
4475 7277 2.762887 CTCTGGTGAGCTGGTTAGATCA 59.237 50.000 0.00 0.00 46.33 2.92
4501 7303 8.637986 GTGTCTCTAAAGAGGATAGATGTTGAT 58.362 37.037 7.14 0.00 42.30 2.57
4502 7304 7.836685 AGTGTCTCTAAAGAGGATAGATGTTGA 59.163 37.037 7.14 0.00 42.30 3.18
4520 7322 4.601406 ATCTCTTAGGGACAGTGTCTCT 57.399 45.455 28.14 28.14 46.13 3.10
4529 7331 6.235231 TCCATGTGTAAATCTCTTAGGGAC 57.765 41.667 0.00 0.00 0.00 4.46
4531 7333 6.889198 TCTTCCATGTGTAAATCTCTTAGGG 58.111 40.000 0.00 0.00 0.00 3.53
4537 7339 5.163713 GGCAGTTCTTCCATGTGTAAATCTC 60.164 44.000 0.00 0.00 0.00 2.75
4542 7344 3.500448 TGGCAGTTCTTCCATGTGTAA 57.500 42.857 0.00 0.00 0.00 2.41
4543 7345 3.500448 TTGGCAGTTCTTCCATGTGTA 57.500 42.857 0.00 0.00 31.54 2.90
4589 7391 5.559799 GCTGCCGCTTATTTCTAGATTCTTG 60.560 44.000 0.00 0.00 0.00 3.02
4599 7401 0.040958 CCATCGCTGCCGCTTATTTC 60.041 55.000 0.00 0.00 0.00 2.17
4607 7409 1.705337 CCTTTACACCATCGCTGCCG 61.705 60.000 0.00 0.00 0.00 5.69
4610 7412 2.386661 ACTCCTTTACACCATCGCTG 57.613 50.000 0.00 0.00 0.00 5.18
4614 7416 4.312443 TCGTTCAACTCCTTTACACCATC 58.688 43.478 0.00 0.00 0.00 3.51
4642 7444 0.947244 AAGCTTTGTGAGTTGCCTCG 59.053 50.000 0.00 0.00 40.85 4.63
4754 7562 1.269778 GGCAAAGACCTCAAGCCAAAC 60.270 52.381 0.00 0.00 44.59 2.93
4755 7563 1.039856 GGCAAAGACCTCAAGCCAAA 58.960 50.000 0.00 0.00 44.59 3.28
4756 7564 1.172180 CGGCAAAGACCTCAAGCCAA 61.172 55.000 0.00 0.00 45.47 4.52
4788 7596 1.687146 CCTGGAGGCTGGTGAGCTA 60.687 63.158 0.00 0.00 45.44 3.32
4924 7733 8.023021 ACTAATACATCCAGTGATCTTAAGCA 57.977 34.615 0.00 0.00 0.00 3.91
4985 7794 5.449553 ACAATCTCAAGTTCTTGGAGGTTT 58.550 37.500 11.82 3.50 29.87 3.27
5000 7809 1.338674 CCAGGGCACGTAACAATCTCA 60.339 52.381 0.00 0.00 0.00 3.27
5003 7812 1.084289 GTCCAGGGCACGTAACAATC 58.916 55.000 0.00 0.00 0.00 2.67
5011 7820 0.605319 TTGCTTTAGTCCAGGGCACG 60.605 55.000 0.00 0.00 32.47 5.34
5035 7844 7.498570 GCTTCATCTTGTTCTCCTCTAATTCAT 59.501 37.037 0.00 0.00 0.00 2.57
5076 7885 6.017192 TGGGAGGACACATATATACCTTCTC 58.983 44.000 0.00 0.00 0.00 2.87
5088 7897 1.420138 AGAAAACGTGGGAGGACACAT 59.580 47.619 0.00 0.00 41.38 3.21
5092 7901 1.202604 TGACAGAAAACGTGGGAGGAC 60.203 52.381 0.00 0.00 0.00 3.85
5097 7906 2.185004 AGGATGACAGAAAACGTGGG 57.815 50.000 0.00 0.00 0.00 4.61
5105 7922 6.324770 TGCAAGATATGACTAGGATGACAGAA 59.675 38.462 0.00 0.00 0.00 3.02
5118 7935 6.857777 AGAGTAAGCATTGCAAGATATGAC 57.142 37.500 11.91 0.00 30.97 3.06
5125 7942 6.251655 AGAAGAAAGAGTAAGCATTGCAAG 57.748 37.500 11.91 0.00 30.97 4.01
5167 7984 5.900339 CACTACGAAGTGCAAGACTAAAA 57.100 39.130 0.00 0.00 46.28 1.52
5180 7997 3.262420 CATGAAAGGACCCACTACGAAG 58.738 50.000 0.00 0.00 0.00 3.79
5184 8001 2.489938 TGCATGAAAGGACCCACTAC 57.510 50.000 0.00 0.00 0.00 2.73
5193 8014 7.588854 CGTATGTTGAGATTTATGCATGAAAGG 59.411 37.037 10.16 0.00 0.00 3.11
5209 8030 4.826500 GCAAAGTAGATGCGTATGTTGAG 58.173 43.478 0.00 0.00 33.57 3.02
5219 8040 3.565905 ACTGCAAAGCAAAGTAGATGC 57.434 42.857 0.00 0.00 44.15 3.91
5238 8060 5.068198 AGGTTCTTTTAAACGGAAGGGAAAC 59.932 40.000 3.82 0.00 0.00 2.78
5247 8069 6.702282 TGGCAAAATAAGGTTCTTTTAAACGG 59.298 34.615 0.00 0.00 0.00 4.44
5248 8070 7.701809 TGGCAAAATAAGGTTCTTTTAAACG 57.298 32.000 0.00 0.00 0.00 3.60
5258 8081 7.457561 ACCATTATGTTTGGCAAAATAAGGTT 58.542 30.769 15.29 8.52 37.81 3.50
5264 8087 6.047511 TGCTACCATTATGTTTGGCAAAAT 57.952 33.333 15.29 12.47 37.81 1.82
5271 8094 6.250819 CGTCTTTCTGCTACCATTATGTTTG 58.749 40.000 0.00 0.00 0.00 2.93
5275 8099 3.809832 CCCGTCTTTCTGCTACCATTATG 59.190 47.826 0.00 0.00 0.00 1.90
5296 12517 7.760437 AGACGTACTCTAGAAATTAGACAACC 58.240 38.462 0.00 0.00 0.00 3.77
5400 12621 1.303236 CCGAACAAGGCATGTGGGA 60.303 57.895 7.26 0.00 42.99 4.37
5407 12628 2.026729 TCATATGGAACCGAACAAGGCA 60.027 45.455 2.13 0.00 33.69 4.75
5482 12703 1.298953 TTTGAGAGGATTGGAGGGGG 58.701 55.000 0.00 0.00 0.00 5.40
5507 12728 2.749621 GGCTTAAATGGACCTGACACAG 59.250 50.000 0.00 0.00 0.00 3.66
5512 12733 1.339631 CGTGGGCTTAAATGGACCTGA 60.340 52.381 0.00 0.00 31.96 3.86
5513 12734 1.094785 CGTGGGCTTAAATGGACCTG 58.905 55.000 0.00 0.00 31.96 4.00
5514 12735 0.034477 CCGTGGGCTTAAATGGACCT 60.034 55.000 0.00 0.00 31.96 3.85
5516 12737 1.807226 GCCGTGGGCTTAAATGGAC 59.193 57.895 0.00 0.00 46.69 4.02
5517 12738 4.329831 GCCGTGGGCTTAAATGGA 57.670 55.556 0.00 0.00 46.69 3.41
5527 12748 2.507854 ATCTCGTATGGGCCGTGGG 61.508 63.158 8.97 0.00 0.00 4.61
5528 12749 1.300931 CATCTCGTATGGGCCGTGG 60.301 63.158 8.97 0.00 0.00 4.94
5529 12750 0.875908 CACATCTCGTATGGGCCGTG 60.876 60.000 8.97 0.00 0.00 4.94
5531 12752 1.956170 GCACATCTCGTATGGGCCG 60.956 63.158 14.33 0.00 42.31 6.13
5532 12753 4.049393 GCACATCTCGTATGGGCC 57.951 61.111 14.33 0.00 42.31 5.80
5534 12755 2.260844 ATTGGCACATCTCGTATGGG 57.739 50.000 0.00 2.66 39.30 4.00
5535 12756 2.221749 CGAATTGGCACATCTCGTATGG 59.778 50.000 0.00 0.00 39.30 2.74
5537 12758 2.483876 CCGAATTGGCACATCTCGTAT 58.516 47.619 0.00 0.00 39.94 3.06
5549 12770 0.390124 CCATTGATGGGCCGAATTGG 59.610 55.000 0.00 0.00 44.31 3.16
5550 12771 3.972107 CCATTGATGGGCCGAATTG 57.028 52.632 0.00 0.00 44.31 2.32
5560 12781 4.654091 AATCTTTAACGGGCCATTGATG 57.346 40.909 4.39 0.00 0.00 3.07
5561 12782 4.709397 TCAAATCTTTAACGGGCCATTGAT 59.291 37.500 4.39 0.00 0.00 2.57
5562 12783 4.082463 GTCAAATCTTTAACGGGCCATTGA 60.082 41.667 4.39 0.00 0.00 2.57
5563 12784 4.173256 GTCAAATCTTTAACGGGCCATTG 58.827 43.478 4.39 0.00 0.00 2.82
5564 12785 3.829601 TGTCAAATCTTTAACGGGCCATT 59.170 39.130 4.39 0.00 0.00 3.16
5565 12786 3.192633 GTGTCAAATCTTTAACGGGCCAT 59.807 43.478 4.39 0.00 0.00 4.40
5568 12789 2.554893 TGGTGTCAAATCTTTAACGGGC 59.445 45.455 0.00 0.00 0.00 6.13
5571 12792 5.218885 TGCAATGGTGTCAAATCTTTAACG 58.781 37.500 0.00 0.00 0.00 3.18
5574 12795 4.321899 GGCTGCAATGGTGTCAAATCTTTA 60.322 41.667 0.50 0.00 0.00 1.85
5575 12796 3.555586 GGCTGCAATGGTGTCAAATCTTT 60.556 43.478 0.50 0.00 0.00 2.52
5577 12798 1.547372 GGCTGCAATGGTGTCAAATCT 59.453 47.619 0.50 0.00 0.00 2.40
5583 12804 1.811860 GATGGGCTGCAATGGTGTC 59.188 57.895 0.50 0.00 0.00 3.67
5585 12806 1.996786 GACGATGGGCTGCAATGGTG 61.997 60.000 0.50 0.00 0.00 4.17
5586 12807 1.750399 GACGATGGGCTGCAATGGT 60.750 57.895 0.50 1.83 0.00 3.55
5589 12810 0.322816 AACTGACGATGGGCTGCAAT 60.323 50.000 0.50 0.00 0.00 3.56
5592 12813 2.456119 CGAACTGACGATGGGCTGC 61.456 63.158 0.00 0.00 35.09 5.25
5593 12814 0.803768 CTCGAACTGACGATGGGCTG 60.804 60.000 0.00 0.00 41.39 4.85
5595 12816 2.167861 GCTCGAACTGACGATGGGC 61.168 63.158 0.00 0.00 41.39 5.36
5599 12820 1.874345 AACGGGCTCGAACTGACGAT 61.874 55.000 15.95 0.00 41.39 3.73
5603 12824 0.675083 TGTTAACGGGCTCGAACTGA 59.325 50.000 15.95 0.00 40.11 3.41
5604 12825 1.068474 CTGTTAACGGGCTCGAACTG 58.932 55.000 15.95 8.11 40.11 3.16
5606 12827 1.632948 GGCTGTTAACGGGCTCGAAC 61.633 60.000 28.62 8.57 43.65 3.95
5607 12828 1.375013 GGCTGTTAACGGGCTCGAA 60.375 57.895 28.62 0.00 43.65 3.71
5608 12829 2.263540 GGCTGTTAACGGGCTCGA 59.736 61.111 28.62 0.00 43.65 4.04
5609 12830 2.818274 GGGCTGTTAACGGGCTCG 60.818 66.667 32.52 3.27 45.96 5.03
5610 12831 2.818274 CGGGCTGTTAACGGGCTC 60.818 66.667 32.52 23.35 45.96 4.70
5612 12833 2.935627 ATAGCGGGCTGTTAACGGGC 62.936 60.000 28.17 28.17 45.98 6.13
5613 12834 0.390124 TATAGCGGGCTGTTAACGGG 59.610 55.000 16.13 5.39 0.00 5.28
5614 12835 2.450609 ATATAGCGGGCTGTTAACGG 57.549 50.000 10.24 10.24 0.00 4.44
5615 12836 5.163893 CCAAATATATAGCGGGCTGTTAACG 60.164 44.000 2.86 0.00 0.00 3.18
5616 12837 5.123344 CCCAAATATATAGCGGGCTGTTAAC 59.877 44.000 2.86 0.00 0.00 2.01
5617 12838 5.250200 CCCAAATATATAGCGGGCTGTTAA 58.750 41.667 2.86 0.00 0.00 2.01
5618 12839 4.839121 CCCAAATATATAGCGGGCTGTTA 58.161 43.478 2.86 0.00 0.00 2.41
5619 12840 3.686016 CCCAAATATATAGCGGGCTGTT 58.314 45.455 2.86 0.00 0.00 3.16
5624 12845 3.627395 TGAGCCCAAATATATAGCGGG 57.373 47.619 8.91 8.91 40.11 6.13
5625 12846 6.146184 CGATATTGAGCCCAAATATATAGCGG 59.854 42.308 0.00 0.00 35.67 5.52
5627 12848 6.073003 GCCGATATTGAGCCCAAATATATAGC 60.073 42.308 0.00 0.00 35.67 2.97
5628 12849 6.428159 GGCCGATATTGAGCCCAAATATATAG 59.572 42.308 10.05 0.00 41.00 1.31
5629 12850 6.296026 GGCCGATATTGAGCCCAAATATATA 58.704 40.000 10.05 0.00 41.00 0.86
5631 12852 4.523083 GGCCGATATTGAGCCCAAATATA 58.477 43.478 10.05 0.00 41.00 0.86
5633 12854 2.790433 GGCCGATATTGAGCCCAAATA 58.210 47.619 10.05 0.00 41.00 1.40
5634 12855 1.620822 GGCCGATATTGAGCCCAAAT 58.379 50.000 10.05 0.00 41.00 2.32
5635 12856 3.109847 GGCCGATATTGAGCCCAAA 57.890 52.632 10.05 0.00 41.00 3.28
5636 12857 4.898607 GGCCGATATTGAGCCCAA 57.101 55.556 10.05 0.00 41.00 4.12
5639 12860 0.883833 CATTGGGCCGATATTGAGCC 59.116 55.000 5.79 11.97 46.37 4.70
5640 12861 1.808945 CTCATTGGGCCGATATTGAGC 59.191 52.381 5.79 0.00 0.00 4.26
5641 12862 3.407424 TCTCATTGGGCCGATATTGAG 57.593 47.619 14.37 14.37 33.55 3.02
5642 12863 4.371624 AATCTCATTGGGCCGATATTGA 57.628 40.909 5.79 5.54 0.00 2.57
5643 12864 4.378770 CGAAATCTCATTGGGCCGATATTG 60.379 45.833 5.79 0.00 0.00 1.90
5644 12865 3.753272 CGAAATCTCATTGGGCCGATATT 59.247 43.478 5.79 0.00 0.00 1.28
5645 12866 3.338249 CGAAATCTCATTGGGCCGATAT 58.662 45.455 5.79 0.00 0.00 1.63
5646 12867 2.549992 CCGAAATCTCATTGGGCCGATA 60.550 50.000 5.79 0.00 0.00 2.92
5647 12868 1.597742 CGAAATCTCATTGGGCCGAT 58.402 50.000 0.00 0.00 0.00 4.18
5649 12870 2.024918 CCGAAATCTCATTGGGCCG 58.975 57.895 0.00 0.00 0.00 6.13
5650 12871 1.735973 GCCGAAATCTCATTGGGCC 59.264 57.895 0.00 0.00 45.34 5.80
5652 12873 2.094675 ACAAGCCGAAATCTCATTGGG 58.905 47.619 0.00 0.00 0.00 4.12
5653 12874 3.855689 AACAAGCCGAAATCTCATTGG 57.144 42.857 0.00 0.00 0.00 3.16
5654 12875 4.788100 CGTTAACAAGCCGAAATCTCATTG 59.212 41.667 6.39 0.00 0.00 2.82
5655 12876 4.142687 CCGTTAACAAGCCGAAATCTCATT 60.143 41.667 6.39 0.00 0.00 2.57
5656 12877 3.374058 CCGTTAACAAGCCGAAATCTCAT 59.626 43.478 6.39 0.00 0.00 2.90
5657 12878 2.739913 CCGTTAACAAGCCGAAATCTCA 59.260 45.455 6.39 0.00 0.00 3.27
5658 12879 2.475685 GCCGTTAACAAGCCGAAATCTC 60.476 50.000 6.39 0.00 0.00 2.75
5659 12880 1.467342 GCCGTTAACAAGCCGAAATCT 59.533 47.619 6.39 0.00 0.00 2.40
5660 12881 1.466866 GGCCGTTAACAAGCCGAAATC 60.467 52.381 18.05 0.00 36.84 2.17
5661 12882 0.524414 GGCCGTTAACAAGCCGAAAT 59.476 50.000 18.05 0.00 36.84 2.17
5662 12883 1.950758 GGCCGTTAACAAGCCGAAA 59.049 52.632 18.05 0.00 36.84 3.46
5663 12884 3.658048 GGCCGTTAACAAGCCGAA 58.342 55.556 18.05 0.00 36.84 4.30
5666 12887 0.606096 AAATGGGCCGTTAACAAGCC 59.394 50.000 22.64 22.64 46.37 4.35
5667 12888 3.579335 TTAAATGGGCCGTTAACAAGC 57.421 42.857 12.25 7.70 0.00 4.01
5668 12889 4.429108 CCATTAAATGGGCCGTTAACAAG 58.571 43.478 12.25 6.48 46.86 3.16
5669 12890 4.457834 CCATTAAATGGGCCGTTAACAA 57.542 40.909 12.25 6.96 46.86 2.83
5681 12902 6.120905 TGAAAATTGGCCCATCCATTAAATG 58.879 36.000 0.00 0.00 46.04 2.32
5682 12903 6.324601 TGAAAATTGGCCCATCCATTAAAT 57.675 33.333 0.00 0.00 46.04 1.40
5683 12904 5.339035 CCTGAAAATTGGCCCATCCATTAAA 60.339 40.000 0.00 0.00 46.04 1.52
5685 12906 3.710677 CCTGAAAATTGGCCCATCCATTA 59.289 43.478 0.00 0.00 46.04 1.90
5686 12907 2.506644 CCTGAAAATTGGCCCATCCATT 59.493 45.455 0.00 0.00 46.04 3.16
5688 12909 1.078490 TCCTGAAAATTGGCCCATCCA 59.922 47.619 0.00 0.00 44.85 3.41
5689 12910 1.864669 TCCTGAAAATTGGCCCATCC 58.135 50.000 0.00 0.00 0.00 3.51
5690 12911 2.767960 ACATCCTGAAAATTGGCCCATC 59.232 45.455 0.00 0.00 0.00 3.51
5691 12912 2.836667 ACATCCTGAAAATTGGCCCAT 58.163 42.857 0.00 0.00 0.00 4.00
5692 12913 2.323999 ACATCCTGAAAATTGGCCCA 57.676 45.000 0.00 0.00 0.00 5.36
5693 12914 3.096092 TGTACATCCTGAAAATTGGCCC 58.904 45.455 0.00 0.00 0.00 5.80
5695 12916 5.841957 AGATGTACATCCTGAAAATTGGC 57.158 39.130 28.26 3.51 38.58 4.52
5696 12917 6.968904 CGAAAGATGTACATCCTGAAAATTGG 59.031 38.462 28.26 11.90 38.58 3.16
5697 12918 6.968904 CCGAAAGATGTACATCCTGAAAATTG 59.031 38.462 28.26 12.51 38.58 2.32
5698 12919 6.404734 GCCGAAAGATGTACATCCTGAAAATT 60.405 38.462 28.26 13.87 38.58 1.82
5699 12920 5.066505 GCCGAAAGATGTACATCCTGAAAAT 59.933 40.000 28.26 8.74 38.58 1.82
5700 12921 4.394920 GCCGAAAGATGTACATCCTGAAAA 59.605 41.667 28.26 0.00 38.58 2.29
5701 12922 3.938963 GCCGAAAGATGTACATCCTGAAA 59.061 43.478 28.26 0.00 38.58 2.69
5704 12925 2.158900 AGGCCGAAAGATGTACATCCTG 60.159 50.000 28.26 16.73 38.58 3.86
5705 12926 2.119495 AGGCCGAAAGATGTACATCCT 58.881 47.619 28.26 16.06 38.58 3.24
5706 12927 2.622064 AGGCCGAAAGATGTACATCC 57.378 50.000 28.26 14.50 38.58 3.51
5707 12928 4.965119 AAAAGGCCGAAAGATGTACATC 57.035 40.909 25.47 25.47 38.09 3.06
5708 12929 4.335594 GCTAAAAGGCCGAAAGATGTACAT 59.664 41.667 8.43 8.43 0.00 2.29
5710 12931 3.242316 CGCTAAAAGGCCGAAAGATGTAC 60.242 47.826 0.00 0.00 0.00 2.90
5711 12932 2.933906 CGCTAAAAGGCCGAAAGATGTA 59.066 45.455 0.00 0.00 0.00 2.29
5712 12933 1.737793 CGCTAAAAGGCCGAAAGATGT 59.262 47.619 0.00 0.00 0.00 3.06
5713 12934 2.006888 TCGCTAAAAGGCCGAAAGATG 58.993 47.619 0.00 0.00 0.00 2.90
5714 12935 2.007608 GTCGCTAAAAGGCCGAAAGAT 58.992 47.619 0.00 0.00 0.00 2.40
5715 12936 1.435577 GTCGCTAAAAGGCCGAAAGA 58.564 50.000 0.00 0.00 0.00 2.52
5716 12937 0.446616 GGTCGCTAAAAGGCCGAAAG 59.553 55.000 0.00 0.00 0.00 2.62
5717 12938 0.956902 GGGTCGCTAAAAGGCCGAAA 60.957 55.000 0.00 0.00 33.31 3.46
5718 12939 1.376295 GGGTCGCTAAAAGGCCGAA 60.376 57.895 0.00 0.00 33.31 4.30
5720 12941 1.029947 AATGGGTCGCTAAAAGGCCG 61.030 55.000 0.00 0.00 33.31 6.13
5722 12943 4.443913 TTTAAATGGGTCGCTAAAAGGC 57.556 40.909 0.00 0.00 0.00 4.35
5723 12944 5.961272 ACATTTAAATGGGTCGCTAAAAGG 58.039 37.500 27.43 2.64 40.70 3.11
5724 12945 6.310224 CCAACATTTAAATGGGTCGCTAAAAG 59.690 38.462 27.43 3.04 40.70 2.27
5725 12946 6.159988 CCAACATTTAAATGGGTCGCTAAAA 58.840 36.000 27.43 0.00 40.70 1.52
5726 12947 5.715070 CCAACATTTAAATGGGTCGCTAAA 58.285 37.500 27.43 0.00 40.70 1.85
5727 12948 5.317733 CCAACATTTAAATGGGTCGCTAA 57.682 39.130 27.43 0.00 40.70 3.09
5728 12949 4.974368 CCAACATTTAAATGGGTCGCTA 57.026 40.909 27.43 0.00 40.70 4.26
5729 12950 3.866883 CCAACATTTAAATGGGTCGCT 57.133 42.857 27.43 6.97 40.70 4.93
5736 12957 6.257630 CCGGAAATTAGCCCAACATTTAAATG 59.742 38.462 23.60 23.60 42.10 2.32
5738 12959 5.725362 CCGGAAATTAGCCCAACATTTAAA 58.275 37.500 0.00 0.00 0.00 1.52
5739 12960 4.382147 GCCGGAAATTAGCCCAACATTTAA 60.382 41.667 5.05 0.00 0.00 1.52
5740 12961 3.131400 GCCGGAAATTAGCCCAACATTTA 59.869 43.478 5.05 0.00 0.00 1.40
5742 12963 1.480545 GCCGGAAATTAGCCCAACATT 59.519 47.619 5.05 0.00 0.00 2.71
5743 12964 1.111277 GCCGGAAATTAGCCCAACAT 58.889 50.000 5.05 0.00 0.00 2.71
5744 12965 0.968393 GGCCGGAAATTAGCCCAACA 60.968 55.000 5.05 0.00 41.00 3.33
5745 12966 1.813859 GGCCGGAAATTAGCCCAAC 59.186 57.895 5.05 0.00 41.00 3.77
5746 12967 4.347865 GGCCGGAAATTAGCCCAA 57.652 55.556 5.05 0.00 41.00 4.12
5760 12981 1.966451 CTGAAAGACACACCGGGCC 60.966 63.158 6.32 0.00 34.07 5.80
5761 12982 2.617274 GCTGAAAGACACACCGGGC 61.617 63.158 6.32 0.00 34.07 6.13
5762 12983 1.966451 GGCTGAAAGACACACCGGG 60.966 63.158 6.32 0.00 46.27 5.73
5763 12984 3.655481 GGCTGAAAGACACACCGG 58.345 61.111 0.00 0.00 46.27 5.28
5771 12992 3.305709 CCGTCAACAGGCTGAAAGA 57.694 52.632 23.66 12.53 34.07 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.