Multiple sequence alignment - TraesCS1B01G469900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G469900 chr1B 100.000 4672 0 0 1 4672 678498279 678502950 0.000000e+00 8628.0
1 TraesCS1B01G469900 chr1B 93.062 1398 91 5 2757 4151 92851429 92850035 0.000000e+00 2039.0
2 TraesCS1B01G469900 chr1B 89.456 1176 75 15 692 1837 92853804 92852648 0.000000e+00 1439.0
3 TraesCS1B01G469900 chr1B 91.613 620 47 2 1 615 678809742 678810361 0.000000e+00 852.0
4 TraesCS1B01G469900 chr1B 91.238 525 42 4 4150 4672 28293754 28293232 0.000000e+00 712.0
5 TraesCS1B01G469900 chr1B 88.012 342 40 1 692 1033 107795736 107795396 2.020000e-108 403.0
6 TraesCS1B01G469900 chr5B 96.745 2212 64 3 1943 4149 10497827 10500035 0.000000e+00 3679.0
7 TraesCS1B01G469900 chr5B 92.883 1391 93 5 2763 4149 49450850 49452238 0.000000e+00 2015.0
8 TraesCS1B01G469900 chr5B 93.730 1260 48 10 692 1944 10496065 10497300 0.000000e+00 1860.0
9 TraesCS1B01G469900 chr5B 87.926 1292 105 22 692 1951 49392136 49393408 0.000000e+00 1474.0
10 TraesCS1B01G469900 chr5B 92.529 522 37 2 4152 4672 15693442 15693962 0.000000e+00 747.0
11 TraesCS1B01G469900 chr5B 86.899 603 79 0 13 615 257050957 257050355 0.000000e+00 676.0
12 TraesCS1B01G469900 chr2B 96.393 2218 71 6 1943 4153 22382200 22384415 0.000000e+00 3644.0
13 TraesCS1B01G469900 chr2B 88.549 1275 94 22 692 1944 311834122 311835366 0.000000e+00 1498.0
14 TraesCS1B01G469900 chr2B 94.124 885 37 7 1067 1944 22380797 22381673 0.000000e+00 1332.0
15 TraesCS1B01G469900 chr2B 94.139 836 26 8 1943 2768 311835894 311836716 0.000000e+00 1251.0
16 TraesCS1B01G469900 chr2B 95.200 375 14 3 690 1063 22380451 22380822 1.450000e-164 590.0
17 TraesCS1B01G469900 chr2B 97.436 78 2 0 614 691 27390346 27390423 2.930000e-27 134.0
18 TraesCS1B01G469900 chr2B 97.403 77 2 0 615 691 782826542 782826618 1.050000e-26 132.0
19 TraesCS1B01G469900 chr2B 97.403 77 2 0 615 691 782951567 782951643 1.050000e-26 132.0
20 TraesCS1B01G469900 chr2B 91.111 90 7 1 602 691 793891838 793891750 2.280000e-23 121.0
21 TraesCS1B01G469900 chr4D 95.929 1400 47 8 2757 4149 437398821 437397425 0.000000e+00 2261.0
22 TraesCS1B01G469900 chr7A 94.711 1399 67 6 2757 4149 114451510 114450113 0.000000e+00 2167.0
23 TraesCS1B01G469900 chr7A 94.575 1401 70 6 2753 4149 321839332 321837934 0.000000e+00 2161.0
24 TraesCS1B01G469900 chr7A 94.486 671 31 5 2104 2768 7051398 7052068 0.000000e+00 1029.0
25 TraesCS1B01G469900 chr4B 95.646 1332 56 2 2819 4149 531453349 531454679 0.000000e+00 2137.0
26 TraesCS1B01G469900 chr4B 87.539 1284 98 25 692 1943 108079305 108080558 0.000000e+00 1428.0
27 TraesCS1B01G469900 chr4B 95.329 835 29 7 1943 2768 560023038 560022205 0.000000e+00 1317.0
28 TraesCS1B01G469900 chr4B 88.596 1026 78 20 940 1944 560024557 560023550 0.000000e+00 1210.0
29 TraesCS1B01G469900 chr7B 93.629 1397 73 10 2757 4149 60578475 60577091 0.000000e+00 2073.0
30 TraesCS1B01G469900 chr7B 90.729 1262 89 13 692 1944 101714642 101715884 0.000000e+00 1657.0
31 TraesCS1B01G469900 chr7B 96.654 777 21 3 1944 2715 101716413 101717189 0.000000e+00 1286.0
32 TraesCS1B01G469900 chr7B 92.748 524 36 2 4150 4672 99805410 99805932 0.000000e+00 756.0
33 TraesCS1B01G469900 chr7B 92.366 524 35 3 4150 4672 616895780 616895261 0.000000e+00 741.0
34 TraesCS1B01G469900 chr7B 91.412 524 44 1 4150 4672 722189113 722188590 0.000000e+00 717.0
35 TraesCS1B01G469900 chr3B 92.778 1260 54 17 691 1944 436378643 436377415 0.000000e+00 1788.0
36 TraesCS1B01G469900 chr3B 88.551 1284 86 24 692 1944 21575812 21574559 0.000000e+00 1500.0
37 TraesCS1B01G469900 chr3B 97.426 777 16 2 1943 2716 436376888 436376113 0.000000e+00 1321.0
38 TraesCS1B01G469900 chr3B 92.176 524 40 1 4150 4672 73338173 73338696 0.000000e+00 739.0
39 TraesCS1B01G469900 chr3B 92.308 520 38 2 4154 4672 11394434 11394952 0.000000e+00 737.0
40 TraesCS1B01G469900 chr3B 97.403 77 2 0 615 691 764181764 764181688 1.050000e-26 132.0
41 TraesCS1B01G469900 chr3B 97.333 75 2 0 615 689 763223976 763224050 1.360000e-25 128.0
42 TraesCS1B01G469900 chr3B 76.642 137 25 6 692 824 173622049 173621916 8.390000e-08 69.4
43 TraesCS1B01G469900 chr6B 88.785 1284 84 22 692 1944 648885616 648886870 0.000000e+00 1519.0
44 TraesCS1B01G469900 chr6B 88.707 1284 85 21 692 1944 648849567 648850821 0.000000e+00 1513.0
45 TraesCS1B01G469900 chr6B 91.255 526 43 2 4150 4672 620259505 620258980 0.000000e+00 713.0
46 TraesCS1B01G469900 chr6B 97.403 77 2 0 615 691 11201998 11202074 1.050000e-26 132.0
47 TraesCS1B01G469900 chr2D 96.523 834 20 6 1943 2768 573297958 573298790 0.000000e+00 1371.0
48 TraesCS1B01G469900 chr2D 86.722 482 50 7 763 1232 60020050 60020529 1.490000e-144 523.0
49 TraesCS1B01G469900 chr1D 95.449 835 29 6 1943 2768 417759273 417760107 0.000000e+00 1323.0
50 TraesCS1B01G469900 chr1D 90.000 740 42 7 1229 1944 417758034 417758765 0.000000e+00 928.0
51 TraesCS1B01G469900 chr1D 87.442 430 42 5 1114 1543 171321374 171321791 7.030000e-133 484.0
52 TraesCS1B01G469900 chr6D 95.844 794 24 6 1984 2768 55923 55130 0.000000e+00 1275.0
53 TraesCS1B01G469900 chr6D 86.041 437 47 7 1114 1549 281545722 281545299 1.530000e-124 457.0
54 TraesCS1B01G469900 chr5D 91.883 616 46 1 4 615 354348018 354347403 0.000000e+00 857.0
55 TraesCS1B01G469900 chr5D 91.340 612 51 2 4 615 80356855 80356246 0.000000e+00 835.0
56 TraesCS1B01G469900 chr5D 90.323 93 8 1 615 707 523681146 523681237 2.280000e-23 121.0
57 TraesCS1B01G469900 chr6A 89.431 615 65 0 1 615 46299704 46300318 0.000000e+00 776.0
58 TraesCS1B01G469900 chr7D 88.691 619 64 3 1 615 599477402 599478018 0.000000e+00 750.0
59 TraesCS1B01G469900 chr7D 87.967 615 73 1 1 615 556619230 556619843 0.000000e+00 725.0
60 TraesCS1B01G469900 chr7D 91.238 525 43 3 4150 4672 549829822 549830345 0.000000e+00 712.0
61 TraesCS1B01G469900 chr5A 88.725 612 67 1 4 615 601067114 601066505 0.000000e+00 747.0
62 TraesCS1B01G469900 chr1A 86.601 612 81 1 4 615 440880161 440879551 0.000000e+00 675.0
63 TraesCS1B01G469900 chr4A 98.701 77 1 0 615 691 699680568 699680492 2.270000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G469900 chr1B 678498279 678502950 4671 False 8628.000000 8628 100.0000 1 4672 1 chr1B.!!$F1 4671
1 TraesCS1B01G469900 chr1B 92850035 92853804 3769 True 1739.000000 2039 91.2590 692 4151 2 chr1B.!!$R3 3459
2 TraesCS1B01G469900 chr1B 678809742 678810361 619 False 852.000000 852 91.6130 1 615 1 chr1B.!!$F2 614
3 TraesCS1B01G469900 chr1B 28293232 28293754 522 True 712.000000 712 91.2380 4150 4672 1 chr1B.!!$R1 522
4 TraesCS1B01G469900 chr5B 10496065 10500035 3970 False 2769.500000 3679 95.2375 692 4149 2 chr5B.!!$F4 3457
5 TraesCS1B01G469900 chr5B 49450850 49452238 1388 False 2015.000000 2015 92.8830 2763 4149 1 chr5B.!!$F3 1386
6 TraesCS1B01G469900 chr5B 49392136 49393408 1272 False 1474.000000 1474 87.9260 692 1951 1 chr5B.!!$F2 1259
7 TraesCS1B01G469900 chr5B 15693442 15693962 520 False 747.000000 747 92.5290 4152 4672 1 chr5B.!!$F1 520
8 TraesCS1B01G469900 chr5B 257050355 257050957 602 True 676.000000 676 86.8990 13 615 1 chr5B.!!$R1 602
9 TraesCS1B01G469900 chr2B 22380451 22384415 3964 False 1855.333333 3644 95.2390 690 4153 3 chr2B.!!$F4 3463
10 TraesCS1B01G469900 chr2B 311834122 311836716 2594 False 1374.500000 1498 91.3440 692 2768 2 chr2B.!!$F5 2076
11 TraesCS1B01G469900 chr4D 437397425 437398821 1396 True 2261.000000 2261 95.9290 2757 4149 1 chr4D.!!$R1 1392
12 TraesCS1B01G469900 chr7A 114450113 114451510 1397 True 2167.000000 2167 94.7110 2757 4149 1 chr7A.!!$R1 1392
13 TraesCS1B01G469900 chr7A 321837934 321839332 1398 True 2161.000000 2161 94.5750 2753 4149 1 chr7A.!!$R2 1396
14 TraesCS1B01G469900 chr7A 7051398 7052068 670 False 1029.000000 1029 94.4860 2104 2768 1 chr7A.!!$F1 664
15 TraesCS1B01G469900 chr4B 531453349 531454679 1330 False 2137.000000 2137 95.6460 2819 4149 1 chr4B.!!$F2 1330
16 TraesCS1B01G469900 chr4B 108079305 108080558 1253 False 1428.000000 1428 87.5390 692 1943 1 chr4B.!!$F1 1251
17 TraesCS1B01G469900 chr4B 560022205 560024557 2352 True 1263.500000 1317 91.9625 940 2768 2 chr4B.!!$R1 1828
18 TraesCS1B01G469900 chr7B 60577091 60578475 1384 True 2073.000000 2073 93.6290 2757 4149 1 chr7B.!!$R1 1392
19 TraesCS1B01G469900 chr7B 101714642 101717189 2547 False 1471.500000 1657 93.6915 692 2715 2 chr7B.!!$F2 2023
20 TraesCS1B01G469900 chr7B 99805410 99805932 522 False 756.000000 756 92.7480 4150 4672 1 chr7B.!!$F1 522
21 TraesCS1B01G469900 chr7B 616895261 616895780 519 True 741.000000 741 92.3660 4150 4672 1 chr7B.!!$R2 522
22 TraesCS1B01G469900 chr7B 722188590 722189113 523 True 717.000000 717 91.4120 4150 4672 1 chr7B.!!$R3 522
23 TraesCS1B01G469900 chr3B 436376113 436378643 2530 True 1554.500000 1788 95.1020 691 2716 2 chr3B.!!$R4 2025
24 TraesCS1B01G469900 chr3B 21574559 21575812 1253 True 1500.000000 1500 88.5510 692 1944 1 chr3B.!!$R1 1252
25 TraesCS1B01G469900 chr3B 73338173 73338696 523 False 739.000000 739 92.1760 4150 4672 1 chr3B.!!$F2 522
26 TraesCS1B01G469900 chr3B 11394434 11394952 518 False 737.000000 737 92.3080 4154 4672 1 chr3B.!!$F1 518
27 TraesCS1B01G469900 chr6B 648885616 648886870 1254 False 1519.000000 1519 88.7850 692 1944 1 chr6B.!!$F3 1252
28 TraesCS1B01G469900 chr6B 648849567 648850821 1254 False 1513.000000 1513 88.7070 692 1944 1 chr6B.!!$F2 1252
29 TraesCS1B01G469900 chr6B 620258980 620259505 525 True 713.000000 713 91.2550 4150 4672 1 chr6B.!!$R1 522
30 TraesCS1B01G469900 chr2D 573297958 573298790 832 False 1371.000000 1371 96.5230 1943 2768 1 chr2D.!!$F2 825
31 TraesCS1B01G469900 chr1D 417758034 417760107 2073 False 1125.500000 1323 92.7245 1229 2768 2 chr1D.!!$F2 1539
32 TraesCS1B01G469900 chr6D 55130 55923 793 True 1275.000000 1275 95.8440 1984 2768 1 chr6D.!!$R1 784
33 TraesCS1B01G469900 chr5D 354347403 354348018 615 True 857.000000 857 91.8830 4 615 1 chr5D.!!$R2 611
34 TraesCS1B01G469900 chr5D 80356246 80356855 609 True 835.000000 835 91.3400 4 615 1 chr5D.!!$R1 611
35 TraesCS1B01G469900 chr6A 46299704 46300318 614 False 776.000000 776 89.4310 1 615 1 chr6A.!!$F1 614
36 TraesCS1B01G469900 chr7D 599477402 599478018 616 False 750.000000 750 88.6910 1 615 1 chr7D.!!$F3 614
37 TraesCS1B01G469900 chr7D 556619230 556619843 613 False 725.000000 725 87.9670 1 615 1 chr7D.!!$F2 614
38 TraesCS1B01G469900 chr7D 549829822 549830345 523 False 712.000000 712 91.2380 4150 4672 1 chr7D.!!$F1 522
39 TraesCS1B01G469900 chr5A 601066505 601067114 609 True 747.000000 747 88.7250 4 615 1 chr5A.!!$R1 611
40 TraesCS1B01G469900 chr1A 440879551 440880161 610 True 675.000000 675 86.6010 4 615 1 chr1A.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 664 0.103572 GCTTACGTTCGGGCCAGATA 59.896 55.0 6.36 0.00 0.00 1.98 F
653 667 0.103572 TACGTTCGGGCCAGATAAGC 59.896 55.0 6.36 0.00 0.00 3.09 F
1379 1412 0.107165 GCCGCTTGAAACCCTATCCT 60.107 55.0 0.00 0.00 0.00 3.24 F
2985 4191 0.250252 TTGCACGTGGAGATCAGCAA 60.250 50.0 18.88 9.64 39.38 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1539 0.991920 CCCCTTCCTTCAACTGCCTA 59.008 55.000 0.00 0.00 0.00 3.93 R
1753 1809 1.226746 GGGGTGTCGTGAACAGAAAG 58.773 55.000 0.00 0.00 38.97 2.62 R
3235 4441 1.150536 GTCCCCTCCTTGTTGCACA 59.849 57.895 0.00 0.00 0.00 4.57 R
4564 5785 0.101939 GACGGACCGCTAAACCTAGG 59.898 60.000 15.39 7.41 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.979578 TGTTCAAATAAGCATAACACAATCTTT 57.020 25.926 0.00 0.00 0.00 2.52
90 91 3.710326 TGACAGTATCATCAGCGTACC 57.290 47.619 0.00 0.00 29.99 3.34
143 148 0.690762 GAACAAGCCCACCTACCTGA 59.309 55.000 0.00 0.00 0.00 3.86
166 171 6.127310 TGACCATTCTCTTTAGCTCTTCCTAC 60.127 42.308 0.00 0.00 0.00 3.18
174 179 5.958380 TCTTTAGCTCTTCCTACCAGAATCA 59.042 40.000 0.00 0.00 0.00 2.57
193 202 9.416794 CAGAATCATCAACATATCTACCACTAC 57.583 37.037 0.00 0.00 0.00 2.73
209 218 3.617263 CCACTACGTTGAACAAGATAGGC 59.383 47.826 3.44 0.00 0.00 3.93
245 258 3.951680 CCTGTCTTAAACCCTTGTGTGTT 59.048 43.478 0.00 0.00 0.00 3.32
372 385 0.964700 GGCTTGCTGAAGAAAAGGCT 59.035 50.000 10.58 0.00 41.76 4.58
406 419 6.949352 ATCATACGCTTTCTCAAAATCCAT 57.051 33.333 0.00 0.00 0.00 3.41
496 510 3.403038 CTTCAAGGATGTTTCTGTCCGT 58.597 45.455 0.00 0.00 39.54 4.69
504 518 4.034510 GGATGTTTCTGTCCGTCATGAATC 59.965 45.833 0.00 0.00 0.00 2.52
505 519 4.001618 TGTTTCTGTCCGTCATGAATCA 57.998 40.909 0.00 0.00 0.00 2.57
620 634 1.717032 TGGGACAGAACTGCACTAGT 58.283 50.000 1.46 0.00 42.89 2.57
621 635 2.884320 TGGGACAGAACTGCACTAGTA 58.116 47.619 0.00 0.00 39.18 1.82
622 636 2.826128 TGGGACAGAACTGCACTAGTAG 59.174 50.000 0.00 0.00 39.18 2.57
623 637 3.090037 GGGACAGAACTGCACTAGTAGA 58.910 50.000 3.59 0.00 39.18 2.59
624 638 3.510360 GGGACAGAACTGCACTAGTAGAA 59.490 47.826 3.59 0.00 39.18 2.10
625 639 4.021368 GGGACAGAACTGCACTAGTAGAAA 60.021 45.833 3.59 0.00 39.18 2.52
626 640 5.510861 GGGACAGAACTGCACTAGTAGAAAA 60.511 44.000 3.59 0.00 39.18 2.29
627 641 5.405873 GGACAGAACTGCACTAGTAGAAAAC 59.594 44.000 3.59 0.00 39.18 2.43
628 642 5.914033 ACAGAACTGCACTAGTAGAAAACA 58.086 37.500 3.59 0.00 39.18 2.83
629 643 5.986135 ACAGAACTGCACTAGTAGAAAACAG 59.014 40.000 3.59 7.84 39.18 3.16
630 644 5.406780 CAGAACTGCACTAGTAGAAAACAGG 59.593 44.000 3.59 0.00 39.18 4.00
631 645 4.273148 ACTGCACTAGTAGAAAACAGGG 57.727 45.455 3.59 0.00 38.04 4.45
632 646 3.003480 CTGCACTAGTAGAAAACAGGGC 58.997 50.000 3.59 0.00 36.65 5.19
633 647 2.637872 TGCACTAGTAGAAAACAGGGCT 59.362 45.455 3.59 0.00 36.89 5.19
634 648 3.072476 TGCACTAGTAGAAAACAGGGCTT 59.928 43.478 3.59 0.00 36.89 4.35
635 649 4.285003 TGCACTAGTAGAAAACAGGGCTTA 59.715 41.667 3.59 0.00 36.89 3.09
636 650 4.630505 GCACTAGTAGAAAACAGGGCTTAC 59.369 45.833 3.59 0.00 34.64 2.34
637 651 4.863131 CACTAGTAGAAAACAGGGCTTACG 59.137 45.833 3.59 0.00 0.00 3.18
638 652 4.525874 ACTAGTAGAAAACAGGGCTTACGT 59.474 41.667 3.59 0.00 0.00 3.57
639 653 4.347360 AGTAGAAAACAGGGCTTACGTT 57.653 40.909 0.00 0.00 0.00 3.99
640 654 4.313282 AGTAGAAAACAGGGCTTACGTTC 58.687 43.478 0.00 0.00 0.00 3.95
641 655 2.140717 AGAAAACAGGGCTTACGTTCG 58.859 47.619 0.00 0.00 0.00 3.95
642 656 1.196127 GAAAACAGGGCTTACGTTCGG 59.804 52.381 0.00 0.00 0.00 4.30
643 657 0.604511 AAACAGGGCTTACGTTCGGG 60.605 55.000 0.00 0.00 0.00 5.14
644 658 2.818274 CAGGGCTTACGTTCGGGC 60.818 66.667 0.00 0.00 0.00 6.13
645 659 4.091939 AGGGCTTACGTTCGGGCC 62.092 66.667 16.01 16.01 44.57 5.80
646 660 4.397832 GGGCTTACGTTCGGGCCA 62.398 66.667 17.90 0.00 45.68 5.36
647 661 2.818274 GGCTTACGTTCGGGCCAG 60.818 66.667 4.39 0.00 43.59 4.85
648 662 2.263540 GCTTACGTTCGGGCCAGA 59.736 61.111 4.39 1.93 0.00 3.86
649 663 1.153429 GCTTACGTTCGGGCCAGAT 60.153 57.895 6.36 0.00 0.00 2.90
650 664 0.103572 GCTTACGTTCGGGCCAGATA 59.896 55.000 6.36 0.00 0.00 1.98
651 665 1.472026 GCTTACGTTCGGGCCAGATAA 60.472 52.381 6.36 1.79 0.00 1.75
652 666 2.470821 CTTACGTTCGGGCCAGATAAG 58.529 52.381 6.36 8.29 0.00 1.73
653 667 0.103572 TACGTTCGGGCCAGATAAGC 59.896 55.000 6.36 0.00 0.00 3.09
661 675 2.959465 GGCCAGATAAGCCCATTAGT 57.041 50.000 0.00 0.00 45.16 2.24
662 676 2.784347 GGCCAGATAAGCCCATTAGTC 58.216 52.381 0.00 0.00 45.16 2.59
663 677 2.553247 GGCCAGATAAGCCCATTAGTCC 60.553 54.545 0.00 0.00 45.16 3.85
664 678 2.373502 GCCAGATAAGCCCATTAGTCCT 59.626 50.000 0.00 0.00 0.00 3.85
665 679 3.558109 GCCAGATAAGCCCATTAGTCCTC 60.558 52.174 0.00 0.00 0.00 3.71
666 680 3.306364 CCAGATAAGCCCATTAGTCCTCG 60.306 52.174 0.00 0.00 0.00 4.63
667 681 3.322254 CAGATAAGCCCATTAGTCCTCGT 59.678 47.826 0.00 0.00 0.00 4.18
668 682 3.967987 AGATAAGCCCATTAGTCCTCGTT 59.032 43.478 0.00 0.00 0.00 3.85
669 683 2.693267 AAGCCCATTAGTCCTCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
670 684 1.568504 AGCCCATTAGTCCTCGTTCA 58.431 50.000 0.00 0.00 0.00 3.18
671 685 1.482593 AGCCCATTAGTCCTCGTTCAG 59.517 52.381 0.00 0.00 0.00 3.02
672 686 1.207329 GCCCATTAGTCCTCGTTCAGT 59.793 52.381 0.00 0.00 0.00 3.41
673 687 2.738964 GCCCATTAGTCCTCGTTCAGTC 60.739 54.545 0.00 0.00 0.00 3.51
674 688 2.496070 CCCATTAGTCCTCGTTCAGTCA 59.504 50.000 0.00 0.00 0.00 3.41
675 689 3.512680 CCATTAGTCCTCGTTCAGTCAC 58.487 50.000 0.00 0.00 0.00 3.67
676 690 2.983402 TTAGTCCTCGTTCAGTCACG 57.017 50.000 0.00 0.00 41.78 4.35
677 691 2.174363 TAGTCCTCGTTCAGTCACGA 57.826 50.000 0.00 0.00 46.81 4.35
681 695 4.620437 TCGTTCAGTCACGAACCG 57.380 55.556 6.86 0.00 46.02 4.44
682 696 1.008194 TCGTTCAGTCACGAACCGG 60.008 57.895 0.00 0.00 46.02 5.28
683 697 2.019951 CGTTCAGTCACGAACCGGG 61.020 63.158 6.32 0.00 43.15 5.73
684 698 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
748 762 2.361104 GCGTGGGAATGGAAGCCA 60.361 61.111 0.00 0.00 38.19 4.75
755 769 0.392461 GGAATGGAAGCCACGCTACA 60.392 55.000 0.00 0.00 38.25 2.74
933 948 3.434319 CGCGTGCTGCAATTCCCT 61.434 61.111 2.77 0.00 46.97 4.20
959 974 8.355169 TCGCTACTACTATAAATTGACCGAATT 58.645 33.333 0.00 0.00 35.65 2.17
1020 1040 1.518572 CCGCGCTACAACTAGTGGG 60.519 63.158 5.56 0.00 41.12 4.61
1021 1041 1.509463 CGCGCTACAACTAGTGGGA 59.491 57.895 5.56 0.00 43.07 4.37
1069 1091 4.523282 GCCCCTCCCCCTCCATCT 62.523 72.222 0.00 0.00 0.00 2.90
1080 1102 0.193069 CCTCCATCTCCCCTCCATCT 59.807 60.000 0.00 0.00 0.00 2.90
1096 1118 2.865183 ATCTCCCCTCCCCCAACCAG 62.865 65.000 0.00 0.00 0.00 4.00
1306 1335 2.297698 TCTCCACTACGAGGAACCAA 57.702 50.000 0.00 0.00 34.08 3.67
1320 1349 1.765597 AACCAACAGAGGGGGACGAC 61.766 60.000 0.00 0.00 0.00 4.34
1321 1350 1.913762 CCAACAGAGGGGGACGACT 60.914 63.158 0.00 0.00 0.00 4.18
1322 1351 1.592223 CAACAGAGGGGGACGACTC 59.408 63.158 0.00 0.00 34.03 3.36
1377 1410 0.743345 ACGCCGCTTGAAACCCTATC 60.743 55.000 0.00 0.00 0.00 2.08
1378 1411 1.436983 CGCCGCTTGAAACCCTATCC 61.437 60.000 0.00 0.00 0.00 2.59
1379 1412 0.107165 GCCGCTTGAAACCCTATCCT 60.107 55.000 0.00 0.00 0.00 3.24
1380 1413 1.668419 CCGCTTGAAACCCTATCCTG 58.332 55.000 0.00 0.00 0.00 3.86
1381 1414 1.209504 CCGCTTGAAACCCTATCCTGA 59.790 52.381 0.00 0.00 0.00 3.86
1382 1415 2.355716 CCGCTTGAAACCCTATCCTGAA 60.356 50.000 0.00 0.00 0.00 3.02
1383 1416 3.545703 CGCTTGAAACCCTATCCTGAAT 58.454 45.455 0.00 0.00 0.00 2.57
1426 1459 1.137594 AACACGGGATCCCCTCCAAA 61.138 55.000 25.73 0.00 46.98 3.28
1451 1484 5.022787 AGTAGCATCTTCTTCTTCCTCTGT 58.977 41.667 0.00 0.00 0.00 3.41
1485 1518 4.758251 CCGGGTCTGATGCGTGCA 62.758 66.667 0.00 0.00 0.00 4.57
1506 1539 1.742140 TGTTCGCGTGGTTGTGTGT 60.742 52.632 5.77 0.00 0.00 3.72
1558 1592 2.367202 GCTGCTAGGTGTGGGCCTA 61.367 63.158 4.53 0.00 39.94 3.93
1751 1807 4.276642 TGCTTGTGTTTATGCCCATATCA 58.723 39.130 0.00 0.00 0.00 2.15
1753 1809 5.009911 TGCTTGTGTTTATGCCCATATCATC 59.990 40.000 0.00 0.00 0.00 2.92
2279 2872 5.091261 ACTCATCCTCGCATTCTTACTTT 57.909 39.130 0.00 0.00 0.00 2.66
2501 3098 7.923414 ACCAAGATAGGTTTACAATGTCTTC 57.077 36.000 0.00 0.00 39.34 2.87
2530 3127 8.853077 ATAGCAACTATAATGCATAGCTTCAA 57.147 30.769 0.00 0.00 46.22 2.69
2658 3260 4.922206 TGTTCTTCATCTTTGTATGCCCT 58.078 39.130 0.00 0.00 0.00 5.19
2916 4122 5.342433 TGTTGCTCACTCAGAAATGTTTTG 58.658 37.500 0.00 0.00 0.00 2.44
2985 4191 0.250252 TTGCACGTGGAGATCAGCAA 60.250 50.000 18.88 9.64 39.38 3.91
3212 4418 2.126463 CTTCTTCACGGCTCGCGA 60.126 61.111 9.26 9.26 0.00 5.87
3235 4441 3.753272 CAGTGTCTCCCATTGATTCGTTT 59.247 43.478 0.00 0.00 32.80 3.60
3292 4498 2.151202 CGTGCAACAAGTAAGGACCAT 58.849 47.619 0.00 0.00 35.74 3.55
3332 4539 2.967459 TCGTGTGCATGTGCTAAAAG 57.033 45.000 6.55 0.00 42.66 2.27
3586 4794 2.376842 GGGGGAGGGAGGATTGGA 59.623 66.667 0.00 0.00 0.00 3.53
3642 4850 7.461182 AGATACATCTAGAGAAGTGGTATGC 57.539 40.000 0.00 0.00 34.85 3.14
3653 4861 1.139853 AGTGGTATGCTTAGGCTGCTC 59.860 52.381 0.00 0.00 39.59 4.26
3725 4933 8.038351 TGTTAAATGGAATCACGTGATCTCTTA 58.962 33.333 30.06 18.77 32.75 2.10
3727 4935 4.028852 TGGAATCACGTGATCTCTTACG 57.971 45.455 30.06 2.09 45.19 3.18
3777 4985 3.500448 TGGTGCAAGTGTTAAGATGGA 57.500 42.857 0.00 0.00 0.00 3.41
4080 5297 6.324819 ACTTTTAGTTGTAGCGCGATACTAA 58.675 36.000 31.61 21.98 31.48 2.24
4221 5438 1.182385 GGGCATTTGTCCCGGTTCAA 61.182 55.000 0.00 2.23 32.49 2.69
4276 5493 3.329542 GACCAATGGGCCTCGCTCA 62.330 63.158 4.53 0.00 45.75 4.26
4315 5532 1.826054 CGGTTGGTGGCTTGAACCA 60.826 57.895 11.09 2.22 46.01 3.67
4452 5673 1.231928 GGGGAGGGTTTTGTGGTGT 59.768 57.895 0.00 0.00 0.00 4.16
4513 5734 1.810755 GCCCAAGCCACACTACTTAAC 59.189 52.381 0.00 0.00 0.00 2.01
4564 5785 5.910614 AGCTCCATTTTCCTCAATATTTGC 58.089 37.500 0.00 0.00 0.00 3.68
4590 5811 3.907260 TAGCGGTCCGTCACGTCCT 62.907 63.158 13.94 1.74 0.00 3.85
4616 5837 2.311462 CGTCTTCATCATCGTCGATCC 58.689 52.381 4.34 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 4.261656 GGATGGTGGACTGTCTATTCTACG 60.262 50.000 7.85 0.00 0.00 3.51
143 148 5.129650 GGTAGGAAGAGCTAAAGAGAATGGT 59.870 44.000 0.00 0.00 0.00 3.55
166 171 7.448420 AGTGGTAGATATGTTGATGATTCTGG 58.552 38.462 0.00 0.00 0.00 3.86
174 179 7.342769 TCAACGTAGTGGTAGATATGTTGAT 57.657 36.000 13.29 0.00 45.84 2.57
193 202 2.333926 TGTCGCCTATCTTGTTCAACG 58.666 47.619 0.00 0.00 0.00 4.10
245 258 7.328404 TGATGATATAGGGCACTATTTCCAA 57.672 36.000 15.04 1.41 40.35 3.53
372 385 8.689061 TGAGAAAGCGTATGATAAGGTTAAGTA 58.311 33.333 3.45 0.00 0.00 2.24
406 419 5.853572 ACTAGATGGGGTGGTTTTTAAGA 57.146 39.130 0.00 0.00 0.00 2.10
496 510 5.124936 CAGCCTTCTCAAACATGATTCATGA 59.875 40.000 28.81 10.06 43.81 3.07
504 518 1.068055 GGTGCAGCCTTCTCAAACATG 60.068 52.381 4.03 0.00 0.00 3.21
505 519 1.251251 GGTGCAGCCTTCTCAAACAT 58.749 50.000 4.03 0.00 0.00 2.71
536 550 1.321016 CGAACAAGCTGACGCAAATG 58.679 50.000 0.00 0.00 39.10 2.32
549 563 2.158740 TCACAAAGATGGGGACGAACAA 60.159 45.455 0.00 0.00 0.00 2.83
615 629 4.525874 ACGTAAGCCCTGTTTTCTACTAGT 59.474 41.667 0.00 0.00 45.62 2.57
616 630 5.069501 ACGTAAGCCCTGTTTTCTACTAG 57.930 43.478 0.00 0.00 45.62 2.57
617 631 5.473039 GAACGTAAGCCCTGTTTTCTACTA 58.527 41.667 0.00 0.00 45.62 1.82
618 632 4.313282 GAACGTAAGCCCTGTTTTCTACT 58.687 43.478 0.00 0.00 45.62 2.57
619 633 3.122445 CGAACGTAAGCCCTGTTTTCTAC 59.878 47.826 0.00 0.00 45.62 2.59
620 634 3.319755 CGAACGTAAGCCCTGTTTTCTA 58.680 45.455 0.00 0.00 45.62 2.10
621 635 2.140717 CGAACGTAAGCCCTGTTTTCT 58.859 47.619 0.00 0.00 45.62 2.52
622 636 1.196127 CCGAACGTAAGCCCTGTTTTC 59.804 52.381 0.00 0.00 45.62 2.29
623 637 1.232119 CCGAACGTAAGCCCTGTTTT 58.768 50.000 0.00 0.00 45.62 2.43
624 638 0.604511 CCCGAACGTAAGCCCTGTTT 60.605 55.000 0.00 0.00 45.62 2.83
625 639 1.004200 CCCGAACGTAAGCCCTGTT 60.004 57.895 0.00 0.00 45.62 3.16
626 640 2.660802 CCCGAACGTAAGCCCTGT 59.339 61.111 0.00 0.00 45.62 4.00
627 641 2.818274 GCCCGAACGTAAGCCCTG 60.818 66.667 0.00 0.00 45.62 4.45
628 642 4.091939 GGCCCGAACGTAAGCCCT 62.092 66.667 6.77 0.00 45.62 5.19
629 643 4.397832 TGGCCCGAACGTAAGCCC 62.398 66.667 13.51 1.40 45.14 5.19
630 644 2.588856 ATCTGGCCCGAACGTAAGCC 62.589 60.000 0.00 10.24 45.96 4.35
631 645 0.103572 TATCTGGCCCGAACGTAAGC 59.896 55.000 0.00 0.00 45.62 3.09
633 647 1.472026 GCTTATCTGGCCCGAACGTAA 60.472 52.381 0.00 0.00 0.00 3.18
634 648 0.103572 GCTTATCTGGCCCGAACGTA 59.896 55.000 0.00 0.00 0.00 3.57
635 649 1.153429 GCTTATCTGGCCCGAACGT 60.153 57.895 0.00 0.00 0.00 3.99
636 650 1.887707 GGCTTATCTGGCCCGAACG 60.888 63.158 0.00 0.00 43.49 3.95
637 651 4.142780 GGCTTATCTGGCCCGAAC 57.857 61.111 0.00 0.00 43.49 3.95
643 657 2.373502 AGGACTAATGGGCTTATCTGGC 59.626 50.000 0.00 0.00 0.00 4.85
644 658 3.306364 CGAGGACTAATGGGCTTATCTGG 60.306 52.174 0.00 0.00 0.00 3.86
645 659 3.322254 ACGAGGACTAATGGGCTTATCTG 59.678 47.826 0.00 0.00 0.00 2.90
646 660 3.577919 ACGAGGACTAATGGGCTTATCT 58.422 45.455 0.00 0.00 0.00 1.98
647 661 4.202223 TGAACGAGGACTAATGGGCTTATC 60.202 45.833 0.00 0.00 0.00 1.75
648 662 3.709653 TGAACGAGGACTAATGGGCTTAT 59.290 43.478 0.00 0.00 0.00 1.73
649 663 3.101437 TGAACGAGGACTAATGGGCTTA 58.899 45.455 0.00 0.00 0.00 3.09
650 664 1.906574 TGAACGAGGACTAATGGGCTT 59.093 47.619 0.00 0.00 0.00 4.35
651 665 1.482593 CTGAACGAGGACTAATGGGCT 59.517 52.381 0.00 0.00 0.00 5.19
652 666 1.207329 ACTGAACGAGGACTAATGGGC 59.793 52.381 0.00 0.00 0.00 5.36
653 667 2.496070 TGACTGAACGAGGACTAATGGG 59.504 50.000 0.00 0.00 0.00 4.00
654 668 3.512680 GTGACTGAACGAGGACTAATGG 58.487 50.000 0.00 0.00 0.00 3.16
655 669 3.119955 TCGTGACTGAACGAGGACTAATG 60.120 47.826 6.32 0.00 46.99 1.90
656 670 3.079578 TCGTGACTGAACGAGGACTAAT 58.920 45.455 6.32 0.00 46.99 1.73
657 671 2.497138 TCGTGACTGAACGAGGACTAA 58.503 47.619 6.32 0.00 46.99 2.24
658 672 2.174363 TCGTGACTGAACGAGGACTA 57.826 50.000 6.32 0.00 46.99 2.59
659 673 3.016997 TCGTGACTGAACGAGGACT 57.983 52.632 6.32 0.00 46.99 3.85
666 680 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
667 681 1.364901 GTCCCGGTTCGTGACTGAA 59.635 57.895 0.00 0.00 36.72 3.02
668 682 2.567497 GGTCCCGGTTCGTGACTGA 61.567 63.158 0.00 0.00 34.89 3.41
669 683 2.048503 GGTCCCGGTTCGTGACTG 60.049 66.667 0.00 0.00 34.89 3.51
670 684 3.308705 GGGTCCCGGTTCGTGACT 61.309 66.667 0.00 0.00 34.89 3.41
671 685 2.951101 ATGGGTCCCGGTTCGTGAC 61.951 63.158 2.65 0.00 33.83 3.67
672 686 2.605295 ATGGGTCCCGGTTCGTGA 60.605 61.111 2.65 0.00 0.00 4.35
673 687 2.435938 CATGGGTCCCGGTTCGTG 60.436 66.667 2.65 0.00 0.00 4.35
674 688 4.404098 GCATGGGTCCCGGTTCGT 62.404 66.667 2.65 0.00 0.00 3.85
675 689 4.402528 TGCATGGGTCCCGGTTCG 62.403 66.667 2.65 0.00 0.00 3.95
676 690 1.906105 TAGTGCATGGGTCCCGGTTC 61.906 60.000 2.65 0.00 0.00 3.62
677 691 1.921346 TAGTGCATGGGTCCCGGTT 60.921 57.895 2.65 0.00 0.00 4.44
678 692 2.285069 TAGTGCATGGGTCCCGGT 60.285 61.111 2.65 0.00 0.00 5.28
679 693 1.046472 TAGTAGTGCATGGGTCCCGG 61.046 60.000 2.65 0.00 0.00 5.73
680 694 0.389391 CTAGTAGTGCATGGGTCCCG 59.611 60.000 2.65 0.00 0.00 5.14
681 695 0.759346 CCTAGTAGTGCATGGGTCCC 59.241 60.000 0.00 0.00 0.00 4.46
682 696 1.789523 TCCTAGTAGTGCATGGGTCC 58.210 55.000 0.00 0.00 0.00 4.46
683 697 3.906720 TTTCCTAGTAGTGCATGGGTC 57.093 47.619 0.00 0.00 0.00 4.46
684 698 4.589908 CTTTTTCCTAGTAGTGCATGGGT 58.410 43.478 0.00 0.00 0.00 4.51
685 699 3.378427 GCTTTTTCCTAGTAGTGCATGGG 59.622 47.826 0.00 0.00 0.00 4.00
686 700 4.265073 AGCTTTTTCCTAGTAGTGCATGG 58.735 43.478 0.00 0.00 0.00 3.66
687 701 5.886960 AAGCTTTTTCCTAGTAGTGCATG 57.113 39.130 0.00 0.00 0.00 4.06
688 702 8.705594 TCTATAAGCTTTTTCCTAGTAGTGCAT 58.294 33.333 3.20 0.00 0.00 3.96
755 769 7.645058 TTACCCGTGCTACTACTAAATAGTT 57.355 36.000 0.00 0.00 41.71 2.24
772 786 2.613506 GCGCACTGCTTTTACCCGT 61.614 57.895 0.30 0.00 41.73 5.28
817 831 2.053282 GTAGCGTGGAAACGGTAGACG 61.053 57.143 10.10 0.00 44.89 4.18
933 948 6.866010 TCGGTCAATTTATAGTAGTAGCGA 57.134 37.500 0.00 0.00 33.80 4.93
1020 1040 1.303091 ATAAGGTTGCGGTGCGGTTC 61.303 55.000 0.00 0.00 0.00 3.62
1021 1041 1.302993 ATAAGGTTGCGGTGCGGTT 60.303 52.632 0.00 0.00 0.00 4.44
1059 1081 2.122189 GGAGGGGAGATGGAGGGG 60.122 72.222 0.00 0.00 0.00 4.79
1060 1082 0.839853 GATGGAGGGGAGATGGAGGG 60.840 65.000 0.00 0.00 0.00 4.30
1061 1083 0.193069 AGATGGAGGGGAGATGGAGG 59.807 60.000 0.00 0.00 0.00 4.30
1062 1084 1.643310 GAGATGGAGGGGAGATGGAG 58.357 60.000 0.00 0.00 0.00 3.86
1063 1085 0.192064 GGAGATGGAGGGGAGATGGA 59.808 60.000 0.00 0.00 0.00 3.41
1064 1086 0.839853 GGGAGATGGAGGGGAGATGG 60.840 65.000 0.00 0.00 0.00 3.51
1065 1087 0.839853 GGGGAGATGGAGGGGAGATG 60.840 65.000 0.00 0.00 0.00 2.90
1066 1088 1.015131 AGGGGAGATGGAGGGGAGAT 61.015 60.000 0.00 0.00 0.00 2.75
1067 1089 1.630333 AGGGGAGATGGAGGGGAGA 60.630 63.158 0.00 0.00 0.00 3.71
1068 1090 1.152139 GAGGGGAGATGGAGGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
1069 1091 2.727071 GGAGGGGAGATGGAGGGGA 61.727 68.421 0.00 0.00 0.00 4.81
1080 1102 3.882670 ACTGGTTGGGGGAGGGGA 61.883 66.667 0.00 0.00 0.00 4.81
1096 1118 0.250901 ATCTGTGGTGTGGGCAAGAC 60.251 55.000 0.00 0.00 0.00 3.01
1274 1303 1.036707 GTGGAGAAGGAGGGAGATCG 58.963 60.000 0.00 0.00 0.00 3.69
1306 1335 2.037527 GGAGTCGTCCCCCTCTGT 59.962 66.667 0.00 0.00 36.76 3.41
1320 1349 1.347062 GCTAGGGATGGAAGGAGGAG 58.653 60.000 0.00 0.00 0.00 3.69
1321 1350 0.104934 GGCTAGGGATGGAAGGAGGA 60.105 60.000 0.00 0.00 0.00 3.71
1322 1351 1.476007 CGGCTAGGGATGGAAGGAGG 61.476 65.000 0.00 0.00 0.00 4.30
1426 1459 6.013812 ACAGAGGAAGAAGAAGATGCTACTTT 60.014 38.462 0.00 0.00 0.00 2.66
1451 1484 2.039879 CCCGGGGAAGAAGAAGAAGAAA 59.960 50.000 14.71 0.00 0.00 2.52
1485 1518 1.092921 ACACAACCACGCGAACACAT 61.093 50.000 15.93 0.00 0.00 3.21
1506 1539 0.991920 CCCCTTCCTTCAACTGCCTA 59.008 55.000 0.00 0.00 0.00 3.93
1751 1807 2.550208 GGGGTGTCGTGAACAGAAAGAT 60.550 50.000 0.00 0.00 38.97 2.40
1753 1809 1.226746 GGGGTGTCGTGAACAGAAAG 58.773 55.000 0.00 0.00 38.97 2.62
2279 2872 2.071778 AGCTGAAGGAAACAAAGGCA 57.928 45.000 0.00 0.00 0.00 4.75
2334 2927 7.391554 AGCTTTGCTTAAGAACATGATACTGAA 59.608 33.333 6.67 0.00 33.89 3.02
2501 3098 8.489990 AGCTATGCATTATAGTTGCTATCAAG 57.510 34.615 3.54 0.00 40.77 3.02
2530 3127 7.704472 ACAAATACATGTGTGTTCGACAAAATT 59.296 29.630 9.11 0.00 39.77 1.82
2874 4080 1.939934 CAAACCAACTGACTGCTCGAA 59.060 47.619 0.00 0.00 0.00 3.71
2970 4176 4.471904 TCTTTATTGCTGATCTCCACGT 57.528 40.909 0.00 0.00 0.00 4.49
3144 4350 3.751698 CAGGTGCCTAAAGTTGTAAGGAC 59.248 47.826 3.87 0.00 31.64 3.85
3212 4418 2.303022 ACGAATCAATGGGAGACACTGT 59.697 45.455 0.00 0.00 0.00 3.55
3235 4441 1.150536 GTCCCCTCCTTGTTGCACA 59.849 57.895 0.00 0.00 0.00 4.57
3292 4498 6.010850 ACGAATCAATAGTATAGCCAGAGGA 58.989 40.000 0.00 0.00 0.00 3.71
3332 4539 7.284716 CCAAATCCAGTAGGGTATTTTCTTACC 59.715 40.741 0.00 0.00 40.86 2.85
3586 4794 1.277557 GAGTTCAGATGCTGGTGGACT 59.722 52.381 0.00 0.00 31.51 3.85
3642 4850 0.037326 TGTTCCACGAGCAGCCTAAG 60.037 55.000 0.00 0.00 0.00 2.18
3653 4861 2.833631 ACCTTTCCTAGTGTTCCACG 57.166 50.000 0.00 0.00 39.64 4.94
3725 4933 3.304659 GCAACATTGAACATCTCAACCGT 60.305 43.478 0.00 0.00 46.80 4.83
3727 4935 4.241590 TGCAACATTGAACATCTCAACC 57.758 40.909 0.00 0.00 46.80 3.77
3777 4985 7.015195 AGTGCAAAATAAATTAAGGTCACAGGT 59.985 33.333 0.00 0.00 0.00 4.00
4209 5426 2.112297 GCCAGTTGAACCGGGACA 59.888 61.111 6.32 1.89 0.00 4.02
4315 5532 2.023760 AAAGGGCAGCCTTTGGTCCT 62.024 55.000 10.08 0.00 38.42 3.85
4428 5649 0.930726 ACAAAACCCTCCCCTCAACA 59.069 50.000 0.00 0.00 0.00 3.33
4452 5673 2.695666 GTGCATAGGAGGTGAGCTAGAA 59.304 50.000 0.00 0.00 0.00 2.10
4497 5718 5.306114 AGAAAGGTTAAGTAGTGTGGCTT 57.694 39.130 0.00 0.00 0.00 4.35
4513 5734 1.905215 TGAGCTTGGAGAGGAGAAAGG 59.095 52.381 0.00 0.00 0.00 3.11
4564 5785 0.101939 GACGGACCGCTAAACCTAGG 59.898 60.000 15.39 7.41 0.00 3.02
4590 5811 0.459899 CGATGATGAAGACGGGGACA 59.540 55.000 0.00 0.00 0.00 4.02
4616 5837 2.356793 GATGAGATCAGCGCGGGG 60.357 66.667 8.83 0.00 0.00 5.73
4624 5845 1.144716 GGTGCCAGCGATGAGATCA 59.855 57.895 0.06 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.