Multiple sequence alignment - TraesCS1B01G469100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G469100 chr1B 100.000 1712 0 0 731 2442 678218133 678219844 0.000000e+00 3162.0
1 TraesCS1B01G469100 chr1B 100.000 552 0 0 1 552 678217403 678217954 0.000000e+00 1020.0
2 TraesCS1B01G469100 chr1B 100.000 546 0 0 2776 3321 678220178 678220723 0.000000e+00 1009.0
3 TraesCS1B01G469100 chr1B 75.982 433 83 11 14 432 491037624 491038049 1.560000e-48 204.0
4 TraesCS1B01G469100 chr1B 86.047 86 9 3 2855 2939 488397455 488397372 4.560000e-14 89.8
5 TraesCS1B01G469100 chr1D 95.576 1605 61 4 839 2442 487041720 487043315 0.000000e+00 2562.0
6 TraesCS1B01G469100 chr1D 94.203 552 24 1 2778 3321 487043752 487044303 0.000000e+00 835.0
7 TraesCS1B01G469100 chr1D 90.714 560 39 4 1 551 487034630 487035185 0.000000e+00 734.0
8 TraesCS1B01G469100 chr1A 95.863 1136 40 5 1301 2429 584538309 584539444 0.000000e+00 1831.0
9 TraesCS1B01G469100 chr1A 95.058 344 14 2 775 1118 584537924 584538264 3.770000e-149 538.0
10 TraesCS1B01G469100 chr1A 93.548 279 17 1 3044 3321 584540458 584540736 6.630000e-112 414.0
11 TraesCS1B01G469100 chr1A 90.040 251 24 1 301 551 584537508 584537757 1.150000e-84 324.0
12 TraesCS1B01G469100 chr1A 96.277 188 7 0 2862 3049 584540002 584540189 3.220000e-80 309.0
13 TraesCS1B01G469100 chr1A 95.890 73 1 1 2776 2848 584539849 584539919 2.090000e-22 117.0
14 TraesCS1B01G469100 chr1A 97.561 41 1 0 1051 1091 584538259 584538299 1.650000e-08 71.3
15 TraesCS1B01G469100 chr3B 76.977 430 71 18 15 432 23928365 23928778 1.550000e-53 220.0
16 TraesCS1B01G469100 chr5A 75.955 445 75 22 1 433 268711319 268710895 2.020000e-47 200.0
17 TraesCS1B01G469100 chrUn 75.467 428 83 11 15 433 49408604 49409018 4.370000e-44 189.0
18 TraesCS1B01G469100 chr7B 75.676 444 69 27 14 432 690260836 690260407 5.660000e-43 185.0
19 TraesCS1B01G469100 chr2B 75.174 431 86 15 14 432 232248043 232248464 2.030000e-42 183.0
20 TraesCS1B01G469100 chr7D 74.032 439 95 9 5 431 431250418 431249987 9.530000e-36 161.0
21 TraesCS1B01G469100 chr2A 86.131 137 6 5 3099 3222 695299044 695298908 5.780000e-28 135.0
22 TraesCS1B01G469100 chr5B 73.051 449 89 24 14 432 91135894 91136340 2.690000e-26 130.0
23 TraesCS1B01G469100 chr2D 92.453 53 4 0 3099 3151 555907563 555907511 3.550000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G469100 chr1B 678217403 678220723 3320 False 1730.333333 3162 100.0000 1 3321 3 chr1B.!!$F2 3320
1 TraesCS1B01G469100 chr1D 487041720 487044303 2583 False 1698.500000 2562 94.8895 839 3321 2 chr1D.!!$F2 2482
2 TraesCS1B01G469100 chr1D 487034630 487035185 555 False 734.000000 734 90.7140 1 551 1 chr1D.!!$F1 550
3 TraesCS1B01G469100 chr1A 584537508 584540736 3228 False 514.900000 1831 94.8910 301 3321 7 chr1A.!!$F1 3020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 321 0.300491 CCGTCGTGTTTCTGTGTGTG 59.700 55.0 0.00 0.0 0.00 3.82 F
753 764 0.471191 TCGCGAGAGGAGGTATACCA 59.529 55.0 23.87 0.0 35.12 3.25 F
770 781 1.059913 CCAAACCTCTGGTCACTCCT 58.940 55.0 0.00 0.0 33.12 3.69 F
1523 1542 1.169577 ACTGACGGCTAGAGACTGTG 58.830 55.0 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2009 1.301423 TCGGTTGTTTTAGCTTGCGT 58.699 45.000 0.00 0.00 0.00 5.24 R
2076 2098 2.158885 TGGTTGTCCTTGACGATCAACA 60.159 45.455 0.00 0.00 34.51 3.33 R
2084 2106 3.181493 GCATCATGATGGTTGTCCTTGAC 60.181 47.826 31.62 10.92 39.16 3.18 R
3259 3732 0.172578 CAATCGGTAGCGACAGACCA 59.827 55.000 20.66 0.00 35.26 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.613329 ACCGTTACCTTGTTGAAGACATTA 58.387 37.500 0.00 0.00 38.26 1.90
37 38 6.128634 CCGTTACCTTGTTGAAGACATTACTC 60.129 42.308 0.00 0.00 38.26 2.59
45 46 6.280643 TGTTGAAGACATTACTCGGATATGG 58.719 40.000 0.00 0.00 32.00 2.74
47 48 6.085555 TGAAGACATTACTCGGATATGGTC 57.914 41.667 0.00 0.00 0.00 4.02
86 87 5.783875 GGGTATAAACCTAGATTCTGGCCTA 59.216 44.000 3.32 0.00 45.95 3.93
92 102 3.142977 ACCTAGATTCTGGCCTAGATCCA 59.857 47.826 3.32 0.00 35.55 3.41
101 111 1.676678 GCCTAGATCCAGTGACGGCA 61.677 60.000 0.00 0.00 36.16 5.69
110 120 1.197721 CCAGTGACGGCAAAGCTTAAG 59.802 52.381 0.00 0.00 0.00 1.85
117 127 1.873591 CGGCAAAGCTTAAGTGTCACT 59.126 47.619 0.00 0.00 0.00 3.41
123 133 4.439253 AAGCTTAAGTGTCACTCCCTTT 57.561 40.909 5.82 0.00 0.00 3.11
153 163 5.316770 GCGTTACTGTTGAAGAACATCATC 58.683 41.667 0.00 0.00 41.33 2.92
191 201 4.067192 TGAGATGATTGGTGCGAATATGG 58.933 43.478 0.00 0.00 0.00 2.74
207 217 7.095816 TGCGAATATGGTCATCGTTATAGTTTG 60.096 37.037 0.00 0.00 38.75 2.93
235 245 1.106285 GGATTTGATCGCTTTGGGCT 58.894 50.000 0.00 0.00 39.13 5.19
272 282 4.142600 GCCTACACATAGCCTTTTGTCTTG 60.143 45.833 0.00 0.00 0.00 3.02
283 293 5.126061 AGCCTTTTGTCTTGTATATGCCTTG 59.874 40.000 0.00 0.00 0.00 3.61
290 300 5.772672 TGTCTTGTATATGCCTTGGTTGTTT 59.227 36.000 0.00 0.00 0.00 2.83
293 303 3.194542 TGTATATGCCTTGGTTGTTTGCC 59.805 43.478 0.00 0.00 0.00 4.52
295 305 1.398958 ATGCCTTGGTTGTTTGCCGT 61.399 50.000 0.00 0.00 0.00 5.68
296 306 1.299850 GCCTTGGTTGTTTGCCGTC 60.300 57.895 0.00 0.00 0.00 4.79
301 311 1.306642 TGGTTGTTTGCCGTCGTGTT 61.307 50.000 0.00 0.00 0.00 3.32
310 320 1.426041 GCCGTCGTGTTTCTGTGTGT 61.426 55.000 0.00 0.00 0.00 3.72
311 321 0.300491 CCGTCGTGTTTCTGTGTGTG 59.700 55.000 0.00 0.00 0.00 3.82
353 363 2.758736 CATCCTACCTATGCAGAGGC 57.241 55.000 27.20 0.00 40.65 4.70
358 368 1.342819 CTACCTATGCAGAGGCCAGAC 59.657 57.143 27.20 0.00 40.65 3.51
454 465 2.749621 CCCATGTGCTTTACTTCTCACC 59.250 50.000 0.00 0.00 0.00 4.02
502 513 2.635229 CTTGAGAGGCGGGTGGATCG 62.635 65.000 0.00 0.00 0.00 3.69
551 562 2.400158 CGAGTCGCGAGAGGAGGTT 61.400 63.158 10.24 0.00 44.57 3.50
747 758 2.672295 AGAGTCGCGAGAGGAGGT 59.328 61.111 10.24 0.00 43.49 3.85
750 761 1.693062 AGAGTCGCGAGAGGAGGTATA 59.307 52.381 10.24 0.00 43.49 1.47
753 764 0.471191 TCGCGAGAGGAGGTATACCA 59.529 55.000 23.87 0.00 35.12 3.25
757 768 2.223994 GCGAGAGGAGGTATACCAAACC 60.224 54.545 23.87 20.90 38.89 3.27
769 780 3.633361 CCAAACCTCTGGTCACTCC 57.367 57.895 0.00 0.00 33.12 3.85
770 781 1.059913 CCAAACCTCTGGTCACTCCT 58.940 55.000 0.00 0.00 33.12 3.69
772 783 2.637872 CCAAACCTCTGGTCACTCCTTA 59.362 50.000 0.00 0.00 33.12 2.69
773 784 3.264450 CCAAACCTCTGGTCACTCCTTAT 59.736 47.826 0.00 0.00 33.12 1.73
774 785 4.469945 CCAAACCTCTGGTCACTCCTTATA 59.530 45.833 0.00 0.00 33.12 0.98
775 786 5.131142 CCAAACCTCTGGTCACTCCTTATAT 59.869 44.000 0.00 0.00 33.12 0.86
776 787 6.326583 CCAAACCTCTGGTCACTCCTTATATA 59.673 42.308 0.00 0.00 33.12 0.86
777 788 7.016661 CCAAACCTCTGGTCACTCCTTATATAT 59.983 40.741 0.00 0.00 33.12 0.86
778 789 9.090103 CAAACCTCTGGTCACTCCTTATATATA 57.910 37.037 0.00 0.00 33.12 0.86
821 840 2.613223 GCGGCCCATAATTAGTCTCCTC 60.613 54.545 0.00 0.00 0.00 3.71
837 856 2.625737 TCCTCTTGAGGAGTACGTACG 58.374 52.381 19.49 15.01 40.30 3.67
874 893 4.989875 ATGAAGGTAATCAGCAGGCTAT 57.010 40.909 0.00 0.00 31.76 2.97
875 894 7.180946 ACATATGAAGGTAATCAGCAGGCTATA 59.819 37.037 10.38 0.00 31.76 1.31
876 895 5.474578 TGAAGGTAATCAGCAGGCTATAG 57.525 43.478 0.00 0.00 0.00 1.31
877 896 4.284490 TGAAGGTAATCAGCAGGCTATAGG 59.716 45.833 1.04 0.00 0.00 2.57
910 929 3.188873 CGTGATCGGGAGGAACTAGTATC 59.811 52.174 0.00 0.00 41.55 2.24
956 975 9.864034 CGCGAAACAATCAAGATTAAATATACT 57.136 29.630 0.00 0.00 0.00 2.12
1009 1028 1.457346 CTGCTTTTGTGCCTCCCTAG 58.543 55.000 0.00 0.00 0.00 3.02
1044 1063 3.634397 TGATCGAAGAAAGATGGCCTT 57.366 42.857 3.32 0.00 43.58 4.35
1267 1286 3.976701 CTTCATTCCAGGGCCGCGT 62.977 63.158 4.92 0.00 0.00 6.01
1360 1379 4.457496 CCGCTCACCTCACGCCAT 62.457 66.667 0.00 0.00 0.00 4.40
1427 1446 2.476051 GCGTGTGCAACCTGATCG 59.524 61.111 0.00 0.00 42.15 3.69
1523 1542 1.169577 ACTGACGGCTAGAGACTGTG 58.830 55.000 0.00 0.00 0.00 3.66
1682 1704 2.347731 GGGGTCTAAAGAACAAGAGCG 58.652 52.381 0.00 0.00 40.36 5.03
1785 1807 3.372954 GCTTGTACACGCTAGATGTAGG 58.627 50.000 16.50 3.88 33.26 3.18
1786 1808 3.181489 GCTTGTACACGCTAGATGTAGGT 60.181 47.826 16.50 0.00 33.26 3.08
1842 1864 1.202582 GGACATGGGACGGATCGATAG 59.797 57.143 0.00 0.00 0.00 2.08
1934 1956 6.464039 GGTCTACTTGAACAAAGGAGGTTACT 60.464 42.308 0.00 0.00 45.83 2.24
1940 1962 2.583143 ACAAAGGAGGTTACTGGTTGC 58.417 47.619 0.00 0.00 0.00 4.17
2076 2098 2.355209 GCTTGGGAGAGAAGAACGGAAT 60.355 50.000 0.00 0.00 0.00 3.01
2084 2106 4.177026 AGAGAAGAACGGAATGTTGATCG 58.823 43.478 0.00 0.00 42.09 3.69
2181 2203 3.774959 CTCGTCGCCTCAATCGGGG 62.775 68.421 0.00 0.00 38.28 5.73
2187 2209 0.179045 CGCCTCAATCGGGGAAAGAT 60.179 55.000 0.00 0.00 39.19 2.40
2441 2464 8.677148 ATTGGCACATTTTATTAGTACGATCT 57.323 30.769 0.00 0.00 39.30 2.75
2859 2982 9.624373 AGACTACTCAATATTTTTGATCTGCAT 57.376 29.630 0.00 0.00 0.00 3.96
2945 3135 2.224523 ACCGAAGCAAGACTCATTTCCA 60.225 45.455 0.00 0.00 0.00 3.53
2954 3144 5.221126 GCAAGACTCATTTCCAAGAACTTGT 60.221 40.000 12.54 0.00 38.85 3.16
2981 3171 6.170506 ACTAACTTGACTCACAACAAGACAA 58.829 36.000 12.69 0.00 43.98 3.18
3018 3208 3.380004 TCCTAACCAACACAAACTTGCAG 59.620 43.478 0.00 0.00 0.00 4.41
3049 3239 5.121380 ACATGCATCTCCTCCAAGTTTAT 57.879 39.130 0.00 0.00 0.00 1.40
3052 3242 3.282021 GCATCTCCTCCAAGTTTATGCA 58.718 45.455 0.00 0.00 38.44 3.96
3053 3243 3.065925 GCATCTCCTCCAAGTTTATGCAC 59.934 47.826 0.00 0.00 38.44 4.57
3089 3554 1.529796 CTGGGGCCATTTACCGCTA 59.470 57.895 4.39 0.00 40.63 4.26
3090 3555 0.535102 CTGGGGCCATTTACCGCTAG 60.535 60.000 4.39 0.00 40.63 3.42
3156 3629 2.181125 TGGTCCACCGTTGAGCTATAA 58.819 47.619 3.74 0.00 39.43 0.98
3259 3732 7.041644 TCGATTTGTTATTTGAGGAAGACGTTT 60.042 33.333 0.00 0.00 0.00 3.60
3302 3775 2.494918 CGGGATCGTGGTGGAGTC 59.505 66.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.681793 CCACTTCGACCATATCCGAGT 59.318 52.381 0.00 0.00 36.11 4.18
37 38 2.100916 AGAACCACTTCGACCATATCCG 59.899 50.000 0.00 0.00 0.00 4.18
47 48 7.563508 GGTTTATACCCTGAAGAACCACTTCG 61.564 46.154 0.00 0.00 46.01 3.79
86 87 0.674895 GCTTTGCCGTCACTGGATCT 60.675 55.000 0.00 0.00 0.00 2.75
92 102 1.873591 CACTTAAGCTTTGCCGTCACT 59.126 47.619 3.20 0.00 0.00 3.41
101 111 4.439253 AAGGGAGTGACACTTAAGCTTT 57.561 40.909 10.01 0.00 40.85 3.51
123 133 3.069016 TCTTCAACAGTAACGCCTTCAGA 59.931 43.478 0.00 0.00 0.00 3.27
153 163 3.221964 TCTCACATCATCACACAGACG 57.778 47.619 0.00 0.00 0.00 4.18
166 176 2.696989 TCGCACCAATCATCTCACAT 57.303 45.000 0.00 0.00 0.00 3.21
191 201 5.432157 CAATCGGCAAACTATAACGATGAC 58.568 41.667 0.00 0.00 42.69 3.06
272 282 3.733684 CGGCAAACAACCAAGGCATATAC 60.734 47.826 0.00 0.00 0.00 1.47
283 293 0.179158 AAACACGACGGCAAACAACC 60.179 50.000 0.00 0.00 0.00 3.77
290 300 1.153529 ACACAGAAACACGACGGCA 60.154 52.632 0.00 0.00 0.00 5.69
293 303 0.996462 ACACACACAGAAACACGACG 59.004 50.000 0.00 0.00 0.00 5.12
295 305 1.729517 CACACACACACAGAAACACGA 59.270 47.619 0.00 0.00 0.00 4.35
296 306 1.463056 ACACACACACACAGAAACACG 59.537 47.619 0.00 0.00 0.00 4.49
301 311 3.755905 ACATCAAACACACACACACAGAA 59.244 39.130 0.00 0.00 0.00 3.02
310 320 5.586339 CATACAACCAACATCAAACACACA 58.414 37.500 0.00 0.00 0.00 3.72
311 321 4.444056 GCATACAACCAACATCAAACACAC 59.556 41.667 0.00 0.00 0.00 3.82
431 441 2.375174 TGAGAAGTAAAGCACATGGGGT 59.625 45.455 0.00 0.00 0.00 4.95
440 451 2.342910 TCGACGGTGAGAAGTAAAGC 57.657 50.000 0.00 0.00 0.00 3.51
454 465 1.107538 TGGCCTATCTCCCTTCGACG 61.108 60.000 3.32 0.00 0.00 5.12
502 513 4.467198 TTTCTTTCCTCCTGTATCGACC 57.533 45.455 0.00 0.00 0.00 4.79
730 741 0.470766 ATACCTCCTCTCGCGACTCT 59.529 55.000 3.71 0.00 0.00 3.24
731 742 1.799994 GTATACCTCCTCTCGCGACTC 59.200 57.143 3.71 0.00 0.00 3.36
732 743 1.542987 GGTATACCTCCTCTCGCGACT 60.543 57.143 15.09 0.00 0.00 4.18
733 744 0.873721 GGTATACCTCCTCTCGCGAC 59.126 60.000 15.09 0.00 0.00 5.19
734 745 0.471191 TGGTATACCTCCTCTCGCGA 59.529 55.000 22.41 9.26 36.82 5.87
735 746 1.315690 TTGGTATACCTCCTCTCGCG 58.684 55.000 22.41 0.00 36.82 5.87
736 747 2.223994 GGTTTGGTATACCTCCTCTCGC 60.224 54.545 22.41 4.76 36.82 5.03
737 748 3.297736 AGGTTTGGTATACCTCCTCTCG 58.702 50.000 22.41 0.00 42.30 4.04
753 764 9.315363 CTATATATAAGGAGTGACCAGAGGTTT 57.685 37.037 0.00 0.00 42.04 3.27
795 814 1.338769 ACTAATTATGGGCCGCGATCC 60.339 52.381 8.23 9.46 0.00 3.36
801 820 2.900546 AGAGGAGACTAATTATGGGCCG 59.099 50.000 0.00 0.00 44.43 6.13
821 840 1.467035 GGTGCGTACGTACTCCTCAAG 60.467 57.143 30.65 7.10 0.00 3.02
837 856 3.067180 CCTTCATATGTGGATTGTGGTGC 59.933 47.826 1.90 0.00 0.00 5.01
910 929 1.990563 GATGTTTGTACACGAGTCCGG 59.009 52.381 0.00 0.00 40.78 5.14
956 975 8.567198 TTAGCCGGGTATATATAGTAGGAGTA 57.433 38.462 15.31 0.00 0.00 2.59
992 1011 1.743996 CTCTAGGGAGGCACAAAAGC 58.256 55.000 0.00 0.00 36.03 3.51
1009 1028 1.723542 CGATCAATCTATGCACGGCTC 59.276 52.381 0.00 0.00 0.00 4.70
1282 1301 2.966309 GCCAAGGAAACGGCGACTG 61.966 63.158 16.62 0.71 38.82 3.51
1427 1446 4.147322 CACGTCGAATGTGCCGGC 62.147 66.667 22.73 22.73 0.00 6.13
1491 1510 2.288825 GCCGTCAGTATAGCATAGCCAA 60.289 50.000 0.00 0.00 0.00 4.52
1523 1542 4.500116 GTGGTCCCTCGAGCTCGC 62.500 72.222 30.97 16.23 39.60 5.03
1664 1683 4.170256 CTCTCGCTCTTGTTCTTTAGACC 58.830 47.826 0.00 0.00 0.00 3.85
1785 1807 2.509336 CGTGATCAGTCCGGGCAC 60.509 66.667 9.71 0.00 0.00 5.01
1786 1808 2.994995 ACGTGATCAGTCCGGGCA 60.995 61.111 9.71 0.00 0.00 5.36
1924 1946 1.729586 TCTGCAACCAGTAACCTCCT 58.270 50.000 0.00 0.00 40.09 3.69
1940 1962 5.566623 GTTGTTGTGAGATGTGCATATCTG 58.433 41.667 28.24 0.00 37.53 2.90
1987 2009 1.301423 TCGGTTGTTTTAGCTTGCGT 58.699 45.000 0.00 0.00 0.00 5.24
2076 2098 2.158885 TGGTTGTCCTTGACGATCAACA 60.159 45.455 0.00 0.00 34.51 3.33
2084 2106 3.181493 GCATCATGATGGTTGTCCTTGAC 60.181 47.826 31.62 10.92 39.16 3.18
2181 2203 4.692155 CCATTTCAAAGGGCACAATCTTTC 59.308 41.667 0.00 0.00 31.60 2.62
2187 2209 3.244491 CCAATCCATTTCAAAGGGCACAA 60.244 43.478 0.00 0.00 0.00 3.33
2945 3135 8.880750 GTGAGTCAAGTTAGTTTACAAGTTCTT 58.119 33.333 0.00 0.00 0.00 2.52
2954 3144 7.820386 TGTCTTGTTGTGAGTCAAGTTAGTTTA 59.180 33.333 0.00 0.00 40.97 2.01
2981 3171 6.824958 TGGTTAGGATTAATTAGCAGGAGT 57.175 37.500 0.00 0.00 0.00 3.85
3089 3554 2.180204 GCAACACCAGTGACGTGCT 61.180 57.895 4.48 0.00 35.33 4.40
3090 3555 1.714899 AAGCAACACCAGTGACGTGC 61.715 55.000 4.48 10.55 36.99 5.34
3156 3629 9.632638 AACCATAGCAAATAGAGTATGAACATT 57.367 29.630 0.00 0.00 0.00 2.71
3230 3703 7.962918 CGTCTTCCTCAAATAACAAATCGATTT 59.037 33.333 17.60 17.60 0.00 2.17
3259 3732 0.172578 CAATCGGTAGCGACAGACCA 59.827 55.000 20.66 0.00 35.26 4.02
3299 3772 1.271597 GGACAAAGCCCACATCAGACT 60.272 52.381 0.00 0.00 0.00 3.24
3302 3775 3.658398 AGGACAAAGCCCACATCAG 57.342 52.632 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.