Multiple sequence alignment - TraesCS1B01G468900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G468900 chr1B 100.000 5414 0 0 763 6176 678070178 678064765 0.000000e+00 9998.0
1 TraesCS1B01G468900 chr1B 100.000 536 0 0 1 536 678070940 678070405 0.000000e+00 990.0
2 TraesCS1B01G468900 chr1B 80.462 865 89 24 5241 6071 109491327 109492145 6.900000e-164 588.0
3 TraesCS1B01G468900 chr1B 95.213 188 9 0 2609 2796 325985486 325985673 1.300000e-76 298.0
4 TraesCS1B01G468900 chr1A 89.695 2824 158 58 780 3534 584514622 584511863 0.000000e+00 3480.0
5 TraesCS1B01G468900 chr1A 91.686 842 45 12 4413 5245 584510912 584510087 0.000000e+00 1144.0
6 TraesCS1B01G468900 chr1A 91.778 523 29 5 3817 4333 584511585 584511071 0.000000e+00 715.0
7 TraesCS1B01G468900 chr1A 93.578 109 6 1 3602 3709 486342298 486342406 1.780000e-35 161.0
8 TraesCS1B01G468900 chr1A 88.406 69 8 0 426 494 332332328 332332396 3.970000e-12 84.2
9 TraesCS1B01G468900 chr1D 89.833 2518 136 57 763 3235 486884077 486881635 0.000000e+00 3121.0
10 TraesCS1B01G468900 chr1D 90.247 728 50 12 4469 5189 486880659 486879946 0.000000e+00 931.0
11 TraesCS1B01G468900 chr1D 89.266 354 28 4 1 354 486884552 486884209 9.510000e-118 435.0
12 TraesCS1B01G468900 chr1D 84.580 441 47 15 3886 4313 486881229 486880797 9.580000e-113 418.0
13 TraesCS1B01G468900 chr1D 93.860 228 10 3 3234 3460 486881605 486881381 2.130000e-89 340.0
14 TraesCS1B01G468900 chr1D 95.763 118 5 0 408 525 486884200 486884083 2.270000e-44 191.0
15 TraesCS1B01G468900 chr3D 86.770 839 69 24 5241 6064 108580790 108579979 0.000000e+00 896.0
16 TraesCS1B01G468900 chr3D 89.916 119 10 2 3587 3704 397136572 397136455 1.070000e-32 152.0
17 TraesCS1B01G468900 chr3D 91.509 106 7 1 3602 3705 512256253 512256358 1.790000e-30 145.0
18 TraesCS1B01G468900 chr2A 92.715 604 20 5 5237 5834 734071971 734071386 0.000000e+00 850.0
19 TraesCS1B01G468900 chr2A 97.333 75 2 0 5990 6064 734071075 734071001 1.810000e-25 128.0
20 TraesCS1B01G468900 chr5A 83.294 850 108 24 2145 2980 194711608 194712437 0.000000e+00 752.0
21 TraesCS1B01G468900 chr5A 90.724 442 35 1 5629 6064 665686119 665686560 8.920000e-163 584.0
22 TraesCS1B01G468900 chr5A 89.815 108 11 0 3597 3704 651716778 651716885 8.350000e-29 139.0
23 TraesCS1B01G468900 chr4B 80.952 861 86 21 5239 6064 673236409 673237226 1.470000e-170 610.0
24 TraesCS1B01G468900 chr4B 80.303 858 96 34 5242 6064 43268690 43267871 1.150000e-161 580.0
25 TraesCS1B01G468900 chr4B 91.964 112 6 2 3597 3707 640009158 640009049 2.980000e-33 154.0
26 TraesCS1B01G468900 chr4B 89.815 108 5 3 3609 3714 111788050 111787947 3.880000e-27 134.0
27 TraesCS1B01G468900 chr3A 90.293 443 36 2 5629 6064 670875722 670876164 1.930000e-159 573.0
28 TraesCS1B01G468900 chr3A 87.436 390 32 8 5240 5629 670875397 670875769 3.420000e-117 433.0
29 TraesCS1B01G468900 chr7A 83.629 507 45 15 5595 6069 666676109 666675609 5.680000e-120 442.0
30 TraesCS1B01G468900 chr7A 90.306 196 10 1 5241 5427 666676475 666676280 1.330000e-61 248.0
31 TraesCS1B01G468900 chr7A 82.119 151 23 3 176 325 601967116 601967263 6.500000e-25 126.0
32 TraesCS1B01G468900 chrUn 84.463 354 34 11 1886 2231 27280233 27279893 4.620000e-86 329.0
33 TraesCS1B01G468900 chrUn 85.106 282 35 5 2345 2625 27279892 27279617 1.310000e-71 281.0
34 TraesCS1B01G468900 chrUn 82.171 258 31 9 4939 5188 45530622 45530372 2.260000e-49 207.0
35 TraesCS1B01G468900 chr6B 84.925 199 27 2 1802 1999 80212798 80212994 1.360000e-46 198.0
36 TraesCS1B01G468900 chr6B 91.489 47 3 1 6019 6064 226858695 226858741 5.170000e-06 63.9
37 TraesCS1B01G468900 chr5B 92.105 114 8 1 3597 3709 477078442 477078555 6.410000e-35 159.0
38 TraesCS1B01G468900 chr5B 86.087 115 13 1 3597 3708 386569571 386569457 3.020000e-23 121.0
39 TraesCS1B01G468900 chr7D 92.000 100 5 2 5449 5548 15463202 15463106 3.000000e-28 137.0
40 TraesCS1B01G468900 chr6A 87.288 118 9 1 2037 2154 46773712 46773823 5.020000e-26 130.0
41 TraesCS1B01G468900 chr6A 86.957 115 13 2 3597 3710 178029174 178029061 1.810000e-25 128.0
42 TraesCS1B01G468900 chr7B 83.333 78 8 4 3560 3636 744610488 744610561 4.000000e-07 67.6
43 TraesCS1B01G468900 chr3B 90.566 53 2 3 6016 6065 540633379 540633327 4.000000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G468900 chr1B 678064765 678070940 6175 True 5494.000000 9998 100.0000 1 6176 2 chr1B.!!$R1 6175
1 TraesCS1B01G468900 chr1B 109491327 109492145 818 False 588.000000 588 80.4620 5241 6071 1 chr1B.!!$F1 830
2 TraesCS1B01G468900 chr1A 584510087 584514622 4535 True 1779.666667 3480 91.0530 780 5245 3 chr1A.!!$R1 4465
3 TraesCS1B01G468900 chr1D 486879946 486884552 4606 True 906.000000 3121 90.5915 1 5189 6 chr1D.!!$R1 5188
4 TraesCS1B01G468900 chr3D 108579979 108580790 811 True 896.000000 896 86.7700 5241 6064 1 chr3D.!!$R1 823
5 TraesCS1B01G468900 chr2A 734071001 734071971 970 True 489.000000 850 95.0240 5237 6064 2 chr2A.!!$R1 827
6 TraesCS1B01G468900 chr5A 194711608 194712437 829 False 752.000000 752 83.2940 2145 2980 1 chr5A.!!$F1 835
7 TraesCS1B01G468900 chr4B 673236409 673237226 817 False 610.000000 610 80.9520 5239 6064 1 chr4B.!!$F1 825
8 TraesCS1B01G468900 chr4B 43267871 43268690 819 True 580.000000 580 80.3030 5242 6064 1 chr4B.!!$R1 822
9 TraesCS1B01G468900 chr3A 670875397 670876164 767 False 503.000000 573 88.8645 5240 6064 2 chr3A.!!$F1 824
10 TraesCS1B01G468900 chr7A 666675609 666676475 866 True 345.000000 442 86.9675 5241 6069 2 chr7A.!!$R1 828
11 TraesCS1B01G468900 chrUn 27279617 27280233 616 True 305.000000 329 84.7845 1886 2625 2 chrUn.!!$R2 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.036164 GGGTTTTGGCCATTTGGTCC 59.964 55.0 6.09 3.78 39.61 4.46 F
359 360 0.107165 GGAAAAGACCCGGGATGAGG 60.107 60.0 32.02 0.00 0.00 3.86 F
1443 1495 0.457681 GCTCTCCTGCTCGTCACTTC 60.458 60.0 0.00 0.00 0.00 3.01 F
2227 2310 0.744281 AAACTCAACAAACCCAGGCG 59.256 50.0 0.00 0.00 0.00 5.52 F
2761 2887 0.040958 CAACTTCAGAGGCAACGTGC 60.041 55.0 0.00 0.00 44.08 5.34 F
3959 4195 0.034896 ACGGAGACATGGGTGTTGAC 59.965 55.0 0.00 0.00 39.09 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2027 0.041238 AGGTCGACATGGAGGAGGAA 59.959 55.0 18.91 0.00 0.00 3.36 R
2304 2387 0.861837 GGTCTGTTGAGCTTGACACG 59.138 55.0 0.00 0.00 37.68 4.49 R
2533 2659 0.036952 TGAGGAGTTGCAGCTGTAGC 60.037 55.0 16.64 13.51 42.49 3.58 R
3835 4071 0.243636 AAAACCTGGCATAGCAACGC 59.756 50.0 0.00 0.00 0.00 4.84 R
4096 4338 0.742990 CGGTAATTTGCCCGCTCTGA 60.743 55.0 0.00 0.00 37.43 3.27 R
5586 6062 0.244450 TAGCACAACGGGTAAGACGG 59.756 55.0 0.00 0.00 35.23 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 7.453752 AGAAAAGGGATTAATCATGGATGGATG 59.546 37.037 17.07 0.00 0.00 3.51
75 76 6.251471 AGGGATTAATCATGGATGGATGAAC 58.749 40.000 17.07 0.00 35.97 3.18
83 84 4.701651 TCATGGATGGATGAACACAAAGTC 59.298 41.667 0.00 0.00 29.11 3.01
84 85 4.097551 TGGATGGATGAACACAAAGTCA 57.902 40.909 0.00 0.00 0.00 3.41
116 117 9.204570 GTAGCATATTATTTAGGTGGTACTGTG 57.795 37.037 0.00 0.00 39.41 3.66
153 154 1.002315 CTCTGGGTTTTGGCCATTTGG 59.998 52.381 6.09 0.00 38.53 3.28
156 157 0.036164 GGGTTTTGGCCATTTGGTCC 59.964 55.000 6.09 3.78 39.61 4.46
177 178 8.723365 TGGTCCTTGTCTTAATCATGGTTATAT 58.277 33.333 0.00 0.00 33.61 0.86
232 233 1.677633 CCGACCCGGCCTGAAAAAT 60.678 57.895 0.00 0.00 41.17 1.82
236 237 1.304879 CCCGGCCTGAAAAATCCCA 60.305 57.895 0.00 0.00 0.00 4.37
240 241 1.136891 CGGCCTGAAAAATCCCAATCC 59.863 52.381 0.00 0.00 0.00 3.01
241 242 1.136891 GGCCTGAAAAATCCCAATCCG 59.863 52.381 0.00 0.00 0.00 4.18
248 249 0.185175 AAATCCCAATCCGGCCCTAC 59.815 55.000 0.00 0.00 0.00 3.18
249 250 1.716028 AATCCCAATCCGGCCCTACC 61.716 60.000 0.00 0.00 0.00 3.18
250 251 2.638025 ATCCCAATCCGGCCCTACCT 62.638 60.000 0.00 0.00 35.61 3.08
251 252 2.510906 CCAATCCGGCCCTACCTG 59.489 66.667 0.00 0.00 35.61 4.00
252 253 2.070039 CCAATCCGGCCCTACCTGA 61.070 63.158 0.00 0.00 35.94 3.86
261 262 2.584608 CCTACCTGACCTTGCCCG 59.415 66.667 0.00 0.00 0.00 6.13
292 293 1.208293 CTGGGCCTAGAGTTTGAGTCC 59.792 57.143 11.42 0.00 0.00 3.85
296 297 2.957006 GGCCTAGAGTTTGAGTCCGATA 59.043 50.000 0.00 0.00 0.00 2.92
338 339 1.405391 GCCCGCCATATTTGCTGTTTT 60.405 47.619 0.00 0.00 0.00 2.43
343 344 4.142271 CCGCCATATTTGCTGTTTTAGGAA 60.142 41.667 0.00 0.00 34.67 3.36
354 355 2.442502 TGTTTTAGGAAAAGACCCGGGA 59.557 45.455 32.02 0.00 0.00 5.14
355 356 3.074836 TGTTTTAGGAAAAGACCCGGGAT 59.925 43.478 32.02 13.14 0.00 3.85
356 357 3.359695 TTTAGGAAAAGACCCGGGATG 57.640 47.619 32.02 0.00 0.00 3.51
357 358 2.257391 TAGGAAAAGACCCGGGATGA 57.743 50.000 32.02 0.00 0.00 2.92
359 360 0.107165 GGAAAAGACCCGGGATGAGG 60.107 60.000 32.02 0.00 0.00 3.86
360 361 0.748367 GAAAAGACCCGGGATGAGGC 60.748 60.000 32.02 8.53 0.00 4.70
361 362 2.211468 AAAAGACCCGGGATGAGGCC 62.211 60.000 32.02 6.67 0.00 5.19
362 363 3.642741 AAGACCCGGGATGAGGCCT 62.643 63.158 32.02 3.86 0.00 5.19
363 364 3.866582 GACCCGGGATGAGGCCTG 61.867 72.222 32.02 0.00 0.00 4.85
364 365 4.414956 ACCCGGGATGAGGCCTGA 62.415 66.667 32.02 0.00 36.35 3.86
365 366 2.851102 CCCGGGATGAGGCCTGAT 60.851 66.667 18.48 7.49 36.35 2.90
366 367 2.429058 CCGGGATGAGGCCTGATG 59.571 66.667 12.00 0.00 36.35 3.07
367 368 2.429058 CGGGATGAGGCCTGATGG 59.571 66.667 12.00 0.00 36.35 3.51
368 369 2.842058 GGGATGAGGCCTGATGGG 59.158 66.667 12.00 0.00 38.36 4.00
391 392 2.548464 TTTTATTGATGGGCCAGGCT 57.452 45.000 13.78 0.00 0.00 4.58
392 393 2.548464 TTTATTGATGGGCCAGGCTT 57.452 45.000 13.78 0.00 0.00 4.35
393 394 1.779221 TTATTGATGGGCCAGGCTTG 58.221 50.000 13.78 0.00 0.00 4.01
395 396 2.884179 ATTGATGGGCCAGGCTTGGG 62.884 60.000 17.71 0.34 45.16 4.12
527 528 3.924507 CAGCATTACTGGCACCCC 58.075 61.111 0.00 0.00 43.19 4.95
848 850 3.062909 CGACGTGAAAAAGACAGGACAAA 59.937 43.478 0.00 0.00 0.00 2.83
889 904 2.423185 ACAGTCTTCTCATCTCTGCTCG 59.577 50.000 0.00 0.00 0.00 5.03
953 969 1.239968 AAAAGAGAAGCCAGCCAGCG 61.240 55.000 0.00 0.00 38.01 5.18
1201 1238 4.872574 TCCCCTTCCCCCGGATCG 62.873 72.222 0.73 0.00 0.00 3.69
1217 1259 4.636435 CGTTGCCGTCCCCTGGTT 62.636 66.667 0.00 0.00 0.00 3.67
1220 1262 3.242897 TTGCCGTCCCCTGGTTACG 62.243 63.158 10.19 10.19 36.42 3.18
1231 1283 1.207089 CCTGGTTACGGATGCTCAGAA 59.793 52.381 0.00 0.00 0.00 3.02
1263 1315 4.076394 TCTTCCCCTTTAATTTGTCCGTG 58.924 43.478 0.00 0.00 0.00 4.94
1276 1328 0.606604 GTCCGTGCTCCAGGTAGAAA 59.393 55.000 0.00 0.00 0.00 2.52
1365 1417 2.034376 ACGTCTCCGACCTCTGCT 59.966 61.111 0.00 0.00 37.88 4.24
1443 1495 0.457681 GCTCTCCTGCTCGTCACTTC 60.458 60.000 0.00 0.00 0.00 3.01
1488 1550 2.045536 CCTCCCTCCTGTTGCTGC 60.046 66.667 0.00 0.00 0.00 5.25
1495 1557 4.712425 CCTGTTGCTGCGCTTGGC 62.712 66.667 9.73 11.27 43.96 4.52
1617 1679 4.923871 GGTACTGATAATATCACACTGGCG 59.076 45.833 0.00 0.00 35.06 5.69
1642 1704 3.126831 CAGCTCGACAGTTTCTTCAGTT 58.873 45.455 0.00 0.00 0.00 3.16
1643 1705 3.557595 CAGCTCGACAGTTTCTTCAGTTT 59.442 43.478 0.00 0.00 0.00 2.66
1644 1706 4.745125 CAGCTCGACAGTTTCTTCAGTTTA 59.255 41.667 0.00 0.00 0.00 2.01
1649 1711 7.644157 GCTCGACAGTTTCTTCAGTTTAAAAAT 59.356 33.333 0.00 0.00 0.00 1.82
1650 1712 8.835467 TCGACAGTTTCTTCAGTTTAAAAATG 57.165 30.769 0.00 0.00 34.06 2.32
1862 1924 2.123982 GCCCAGAGCCCAAGATGG 60.124 66.667 0.00 0.00 37.25 3.51
1865 1927 1.751927 CCAGAGCCCAAGATGGTGC 60.752 63.158 0.00 0.00 35.17 5.01
1880 1942 4.415332 TGCGAACGAGGAGACGGC 62.415 66.667 0.00 0.00 37.61 5.68
1930 1992 2.435059 GCTTCAGCCCGGACTCAC 60.435 66.667 0.73 0.00 34.31 3.51
2051 2116 1.603425 CGGCATCTGCATCTCTCTGAG 60.603 57.143 4.33 0.00 44.36 3.35
2055 2123 3.431905 GCATCTGCATCTCTCTGAGGAAA 60.432 47.826 4.59 0.00 41.59 3.13
2117 2185 4.773323 CTTCAGAAGAAGCGGGAATTTT 57.227 40.909 3.82 0.00 44.25 1.82
2227 2310 0.744281 AAACTCAACAAACCCAGGCG 59.256 50.000 0.00 0.00 0.00 5.52
2285 2368 5.296151 TCTCTGAAGAAACAAGACACCAT 57.704 39.130 0.00 0.00 0.00 3.55
2338 2421 1.003233 GACCCTGCAACCTCTCCAC 60.003 63.158 0.00 0.00 0.00 4.02
2483 2570 1.077930 TGAGCCCTCTCAAGCATGC 60.078 57.895 10.51 10.51 45.69 4.06
2494 2608 1.881973 TCAAGCATGCAGAAACTGTCC 59.118 47.619 21.98 0.00 33.43 4.02
2529 2655 1.001746 CCTGAGAGTGAAGCTTCAGCA 59.998 52.381 29.13 21.13 45.16 4.41
2530 2656 2.354906 CCTGAGAGTGAAGCTTCAGCAT 60.355 50.000 29.13 17.77 45.16 3.79
2531 2657 2.931325 CTGAGAGTGAAGCTTCAGCATC 59.069 50.000 29.13 24.12 45.16 3.91
2532 2658 2.301009 TGAGAGTGAAGCTTCAGCATCA 59.699 45.455 29.13 25.71 45.06 3.07
2557 2683 2.331132 GCTGCAACTCCTCAGGCAC 61.331 63.158 0.00 0.00 32.06 5.01
2563 2689 1.064906 CAACTCCTCAGGCACCATCAT 60.065 52.381 0.00 0.00 0.00 2.45
2568 2694 1.153309 TCAGGCACCATCATCAGCG 60.153 57.895 0.00 0.00 0.00 5.18
2569 2695 2.184830 CAGGCACCATCATCAGCGG 61.185 63.158 0.00 0.00 0.00 5.52
2570 2696 3.589881 GGCACCATCATCAGCGGC 61.590 66.667 0.00 0.00 0.00 6.53
2761 2887 0.040958 CAACTTCAGAGGCAACGTGC 60.041 55.000 0.00 0.00 44.08 5.34
3033 3159 1.512310 CGACGTCGAGTTCTGCTCC 60.512 63.158 33.35 0.00 41.10 4.70
3147 3273 4.753233 AGTACATCTGCAACAGATCACTC 58.247 43.478 7.11 0.30 46.83 3.51
3188 3314 6.921857 GGTAAGCTAGTAATCTTATCGTGCAA 59.078 38.462 0.00 0.00 0.00 4.08
3189 3315 7.437267 GGTAAGCTAGTAATCTTATCGTGCAAA 59.563 37.037 0.00 0.00 0.00 3.68
3190 3316 7.843490 AAGCTAGTAATCTTATCGTGCAAAA 57.157 32.000 0.00 0.00 0.00 2.44
3191 3317 7.235430 AGCTAGTAATCTTATCGTGCAAAAC 57.765 36.000 0.00 0.00 0.00 2.43
3192 3318 7.042335 AGCTAGTAATCTTATCGTGCAAAACT 58.958 34.615 0.00 0.00 0.00 2.66
3193 3319 7.222999 AGCTAGTAATCTTATCGTGCAAAACTC 59.777 37.037 0.00 0.00 0.00 3.01
3194 3320 7.010183 GCTAGTAATCTTATCGTGCAAAACTCA 59.990 37.037 0.00 0.00 0.00 3.41
3195 3321 7.295952 AGTAATCTTATCGTGCAAAACTCAG 57.704 36.000 0.00 0.00 0.00 3.35
3218 3344 4.558538 AACTCAGTGTGACAAATTCAGC 57.441 40.909 0.00 0.00 33.71 4.26
3234 3360 3.096489 TCAGCTGTTGAAAAATGCACC 57.904 42.857 14.67 0.00 31.34 5.01
3235 3361 2.694628 TCAGCTGTTGAAAAATGCACCT 59.305 40.909 14.67 0.00 31.34 4.00
3250 3416 4.079980 TGCACCTTGCTAACTGAACTTA 57.920 40.909 0.00 0.00 45.31 2.24
3269 3435 4.757149 ACTTATTGGTTGTTGCTCTCTGTC 59.243 41.667 0.00 0.00 0.00 3.51
3321 3487 1.448540 CAGGCAGAAGATCGCGGTT 60.449 57.895 6.13 0.00 0.00 4.44
3465 3637 2.684001 ATCGGCCTTTGTTACGATGA 57.316 45.000 0.00 0.00 43.55 2.92
3469 3641 3.187637 TCGGCCTTTGTTACGATGAAAAG 59.812 43.478 0.00 0.00 0.00 2.27
3475 3647 5.048713 CCTTTGTTACGATGAAAAGAAGGCT 60.049 40.000 0.00 0.00 32.53 4.58
3476 3648 5.356882 TTGTTACGATGAAAAGAAGGCTG 57.643 39.130 0.00 0.00 0.00 4.85
3499 3671 6.054295 TGTTGCCAGCATTGAAATTTACTTT 58.946 32.000 0.00 0.00 0.00 2.66
3500 3672 6.541641 TGTTGCCAGCATTGAAATTTACTTTT 59.458 30.769 0.00 0.00 0.00 2.27
3501 3673 7.066766 TGTTGCCAGCATTGAAATTTACTTTTT 59.933 29.630 0.00 0.00 0.00 1.94
3540 3712 8.239681 CATTGCATGATTCCAATGCTATAAAG 57.760 34.615 9.79 0.00 41.02 1.85
3557 3734 5.710409 ATAAAGGCTTACCACATACCTGT 57.290 39.130 0.00 0.00 39.06 4.00
3582 3759 6.866480 TCATTTTGGAACTTAATCATGAGCC 58.134 36.000 0.09 0.00 0.00 4.70
3589 3766 5.590259 GGAACTTAATCATGAGCCAAGCTAA 59.410 40.000 0.09 0.00 39.88 3.09
3590 3767 6.095440 GGAACTTAATCATGAGCCAAGCTAAA 59.905 38.462 0.09 0.00 39.88 1.85
3595 3779 8.978874 TTAATCATGAGCCAAGCTAAATAAGA 57.021 30.769 0.09 0.00 39.88 2.10
3599 3783 7.564793 TCATGAGCCAAGCTAAATAAGAACTA 58.435 34.615 0.00 0.00 39.88 2.24
3607 3791 5.903810 AGCTAAATAAGAACTACCTCCGTG 58.096 41.667 0.00 0.00 0.00 4.94
3608 3792 5.655532 AGCTAAATAAGAACTACCTCCGTGA 59.344 40.000 0.00 0.00 0.00 4.35
3609 3793 6.154021 AGCTAAATAAGAACTACCTCCGTGAA 59.846 38.462 0.00 0.00 0.00 3.18
3610 3794 6.476053 GCTAAATAAGAACTACCTCCGTGAAG 59.524 42.308 0.00 0.00 0.00 3.02
3620 3804 7.893124 ACTACCTCCGTGAAGAAATATAAGA 57.107 36.000 0.00 0.00 0.00 2.10
3621 3805 7.942990 ACTACCTCCGTGAAGAAATATAAGAG 58.057 38.462 0.00 0.00 0.00 2.85
3622 3806 5.602628 ACCTCCGTGAAGAAATATAAGAGC 58.397 41.667 0.00 0.00 0.00 4.09
3623 3807 5.128827 ACCTCCGTGAAGAAATATAAGAGCA 59.871 40.000 0.00 0.00 0.00 4.26
3625 3809 6.708054 CCTCCGTGAAGAAATATAAGAGCATT 59.292 38.462 0.00 0.00 0.00 3.56
3656 3840 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3657 3841 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3659 3843 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3699 3935 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
3727 3963 3.995636 TGTTATCTTAGCTCCCCAGACT 58.004 45.455 0.00 0.00 0.00 3.24
3740 3976 4.016444 TCCCCAGACTTGATTATTGCAAC 58.984 43.478 0.00 0.00 0.00 4.17
3756 3992 2.233431 TGCAACTGTTGTTTCTGGCTTT 59.767 40.909 20.57 0.00 33.52 3.51
3761 3997 4.993905 ACTGTTGTTTCTGGCTTTGTTAC 58.006 39.130 0.00 0.00 0.00 2.50
3767 4003 7.067615 TGTTGTTTCTGGCTTTGTTACTCATAA 59.932 33.333 0.00 0.00 0.00 1.90
3776 4012 7.078228 GGCTTTGTTACTCATAAAACTCAGTG 58.922 38.462 0.00 0.00 0.00 3.66
3777 4013 7.255139 GGCTTTGTTACTCATAAAACTCAGTGT 60.255 37.037 0.00 0.00 0.00 3.55
3778 4014 7.798982 GCTTTGTTACTCATAAAACTCAGTGTC 59.201 37.037 0.00 0.00 0.00 3.67
3779 4015 8.958119 TTTGTTACTCATAAAACTCAGTGTCT 57.042 30.769 0.00 0.00 0.00 3.41
3780 4016 7.946655 TGTTACTCATAAAACTCAGTGTCTG 57.053 36.000 0.00 0.00 0.00 3.51
3781 4017 6.929049 TGTTACTCATAAAACTCAGTGTCTGG 59.071 38.462 0.00 0.00 31.51 3.86
3782 4018 5.552870 ACTCATAAAACTCAGTGTCTGGT 57.447 39.130 0.00 0.00 31.51 4.00
3783 4019 5.542779 ACTCATAAAACTCAGTGTCTGGTC 58.457 41.667 0.00 0.00 31.51 4.02
3784 4020 5.070446 ACTCATAAAACTCAGTGTCTGGTCA 59.930 40.000 0.00 0.00 31.51 4.02
3785 4021 6.114187 TCATAAAACTCAGTGTCTGGTCAT 57.886 37.500 0.00 0.00 31.51 3.06
3786 4022 5.934043 TCATAAAACTCAGTGTCTGGTCATG 59.066 40.000 0.00 0.00 31.51 3.07
3787 4023 2.175878 AACTCAGTGTCTGGTCATGC 57.824 50.000 0.00 0.00 31.51 4.06
3788 4024 1.346062 ACTCAGTGTCTGGTCATGCT 58.654 50.000 0.00 0.00 31.51 3.79
3789 4025 1.001746 ACTCAGTGTCTGGTCATGCTG 59.998 52.381 0.00 0.00 31.51 4.41
3790 4026 1.001746 CTCAGTGTCTGGTCATGCTGT 59.998 52.381 0.00 0.00 31.51 4.40
3791 4027 2.232208 CTCAGTGTCTGGTCATGCTGTA 59.768 50.000 0.00 0.00 31.51 2.74
3792 4028 2.232208 TCAGTGTCTGGTCATGCTGTAG 59.768 50.000 0.00 0.00 31.51 2.74
3793 4029 2.232208 CAGTGTCTGGTCATGCTGTAGA 59.768 50.000 0.00 0.00 0.00 2.59
3794 4030 3.102972 AGTGTCTGGTCATGCTGTAGAT 58.897 45.455 0.00 0.00 0.00 1.98
3795 4031 3.517100 AGTGTCTGGTCATGCTGTAGATT 59.483 43.478 0.00 0.00 0.00 2.40
3796 4032 4.019860 AGTGTCTGGTCATGCTGTAGATTT 60.020 41.667 0.00 0.00 0.00 2.17
3797 4033 5.187772 AGTGTCTGGTCATGCTGTAGATTTA 59.812 40.000 0.00 0.00 0.00 1.40
3798 4034 6.051717 GTGTCTGGTCATGCTGTAGATTTAT 58.948 40.000 0.00 0.00 0.00 1.40
3799 4035 6.540189 GTGTCTGGTCATGCTGTAGATTTATT 59.460 38.462 0.00 0.00 0.00 1.40
3800 4036 7.710907 GTGTCTGGTCATGCTGTAGATTTATTA 59.289 37.037 0.00 0.00 0.00 0.98
3801 4037 8.432013 TGTCTGGTCATGCTGTAGATTTATTAT 58.568 33.333 0.00 0.00 0.00 1.28
3802 4038 8.715998 GTCTGGTCATGCTGTAGATTTATTATG 58.284 37.037 0.00 0.00 0.00 1.90
3803 4039 7.388776 TCTGGTCATGCTGTAGATTTATTATGC 59.611 37.037 0.00 0.00 0.00 3.14
3804 4040 6.997476 TGGTCATGCTGTAGATTTATTATGCA 59.003 34.615 0.00 0.00 0.00 3.96
3805 4041 7.173735 TGGTCATGCTGTAGATTTATTATGCAG 59.826 37.037 0.00 0.00 32.65 4.41
3806 4042 7.173907 GGTCATGCTGTAGATTTATTATGCAGT 59.826 37.037 0.00 0.00 32.65 4.40
3807 4043 8.562892 GTCATGCTGTAGATTTATTATGCAGTT 58.437 33.333 0.00 0.00 32.65 3.16
3808 4044 9.777297 TCATGCTGTAGATTTATTATGCAGTTA 57.223 29.630 0.00 0.00 32.65 2.24
3811 4047 8.559536 TGCTGTAGATTTATTATGCAGTTAAGC 58.440 33.333 0.00 0.00 0.00 3.09
3812 4048 7.742089 GCTGTAGATTTATTATGCAGTTAAGCG 59.258 37.037 0.00 0.00 37.31 4.68
3813 4049 8.657074 TGTAGATTTATTATGCAGTTAAGCGT 57.343 30.769 0.00 0.00 37.31 5.07
3814 4050 8.547894 TGTAGATTTATTATGCAGTTAAGCGTG 58.452 33.333 0.00 0.00 37.31 5.34
3815 4051 7.786178 AGATTTATTATGCAGTTAAGCGTGA 57.214 32.000 0.00 0.00 37.31 4.35
3816 4052 7.630924 AGATTTATTATGCAGTTAAGCGTGAC 58.369 34.615 0.00 0.00 37.31 3.67
3817 4053 6.729391 TTTATTATGCAGTTAAGCGTGACA 57.271 33.333 0.00 0.00 37.31 3.58
3818 4054 4.864916 ATTATGCAGTTAAGCGTGACAG 57.135 40.909 0.00 0.00 37.31 3.51
3819 4055 2.455674 ATGCAGTTAAGCGTGACAGA 57.544 45.000 0.00 0.00 37.31 3.41
3881 4117 6.349280 GCTTGTTACATTACATTTGAGCCTGA 60.349 38.462 0.00 0.00 0.00 3.86
3920 4156 2.890474 CAGGTCGGCGATTTCGGG 60.890 66.667 14.79 0.97 40.23 5.14
3956 4192 0.321671 CTGACGGAGACATGGGTGTT 59.678 55.000 0.00 0.00 39.09 3.32
3959 4195 0.034896 ACGGAGACATGGGTGTTGAC 59.965 55.000 0.00 0.00 39.09 3.18
3971 4207 2.808543 GGGTGTTGACACAAGAGTCATC 59.191 50.000 15.42 2.22 46.90 2.92
4027 4263 3.326521 TCCCATGCTTGGTCAGGTATAT 58.673 45.455 16.81 0.00 41.91 0.86
4028 4264 4.498493 TCCCATGCTTGGTCAGGTATATA 58.502 43.478 16.81 0.00 41.91 0.86
4029 4265 4.910913 TCCCATGCTTGGTCAGGTATATAA 59.089 41.667 16.81 0.00 41.91 0.98
4030 4266 5.551583 TCCCATGCTTGGTCAGGTATATAAT 59.448 40.000 16.81 0.00 41.91 1.28
4054 4290 7.621428 TTTGTGAAATTTGGCAAATCTGAAA 57.379 28.000 24.51 15.50 0.00 2.69
4055 4291 7.621428 TTGTGAAATTTGGCAAATCTGAAAA 57.379 28.000 24.51 14.07 0.00 2.29
4056 4292 7.621428 TGTGAAATTTGGCAAATCTGAAAAA 57.379 28.000 24.51 6.32 0.00 1.94
4058 4294 6.912051 GTGAAATTTGGCAAATCTGAAAAACC 59.088 34.615 24.51 7.82 0.00 3.27
4068 4310 6.202762 GCAAATCTGAAAAACCCTTTTACTGG 59.797 38.462 0.00 0.00 34.83 4.00
4090 4332 0.687354 ACAGTTACCTGGCACCTGAG 59.313 55.000 12.37 0.00 43.36 3.35
4096 4338 0.911525 ACCTGGCACCTGAGTATGCT 60.912 55.000 6.00 0.00 41.74 3.79
4192 4434 1.399714 AGGCCGTCGATATCAACAGA 58.600 50.000 3.12 0.00 0.00 3.41
4265 4513 9.799106 ATTAGATAACTGCTGCTACCATAATTT 57.201 29.630 0.00 0.00 0.00 1.82
4288 4537 9.725019 ATTTCCTTTCTGAATTTATTTTCCACC 57.275 29.630 0.00 0.00 0.00 4.61
4350 4718 8.887264 TGGTAGTTTTCACCAACCAAATATAT 57.113 30.769 0.00 0.00 43.08 0.86
4417 4785 9.696572 AGGGAAAATCCATATATTCAGATGATG 57.303 33.333 0.00 0.00 38.64 3.07
4418 4786 9.471702 GGGAAAATCCATATATTCAGATGATGT 57.528 33.333 0.00 0.00 38.64 3.06
4424 4792 8.479313 TCCATATATTCAGATGATGTTTACGC 57.521 34.615 0.00 0.00 0.00 4.42
4425 4793 7.549134 TCCATATATTCAGATGATGTTTACGCC 59.451 37.037 0.00 0.00 0.00 5.68
4430 4798 4.122046 TCAGATGATGTTTACGCCATGAG 58.878 43.478 0.00 0.00 0.00 2.90
4436 4804 2.992593 TGTTTACGCCATGAGCCAATA 58.007 42.857 0.00 0.00 38.78 1.90
4585 4956 7.290481 GGAAGAACCTTCTCCTGGTATAACTAT 59.710 40.741 6.66 0.00 36.28 2.12
4616 4987 1.546029 GACCCTGTTCCCTTCATTTGC 59.454 52.381 0.00 0.00 0.00 3.68
4665 5036 1.655654 CGCGATCGACGAGCTCATT 60.656 57.895 21.57 0.00 45.77 2.57
4785 5156 4.163552 GCATGTCACATGTCAGTCAAATG 58.836 43.478 19.13 0.00 0.00 2.32
4843 5214 7.174107 TCAGTATGATCAATCTTCAGTGTCA 57.826 36.000 0.00 0.00 42.56 3.58
4847 5224 3.619929 TGATCAATCTTCAGTGTCATGCG 59.380 43.478 0.00 0.00 0.00 4.73
4875 5252 5.385198 TGCTTACCTTTCTTCCTGAATGTT 58.615 37.500 0.00 0.00 34.24 2.71
4914 5291 3.933722 CGCATCCTGGAGGGCGAT 61.934 66.667 30.30 0.00 44.81 4.58
5040 5417 3.564027 GTTCGGCCCGATTCGCAG 61.564 66.667 6.69 0.00 35.23 5.18
5189 5566 5.011329 ACCAAAGATGATGAAATGTGTGCTT 59.989 36.000 0.00 0.00 0.00 3.91
5190 5567 5.929992 CCAAAGATGATGAAATGTGTGCTTT 59.070 36.000 0.00 0.00 0.00 3.51
5192 5569 7.287950 CAAAGATGATGAAATGTGTGCTTTTG 58.712 34.615 0.00 0.00 0.00 2.44
5200 5577 4.539509 AATGTGTGCTTTTGTTTGCATG 57.460 36.364 0.00 0.00 41.45 4.06
5202 5579 4.115401 TGTGTGCTTTTGTTTGCATGTA 57.885 36.364 0.00 0.00 41.45 2.29
5203 5580 4.111198 TGTGTGCTTTTGTTTGCATGTAG 58.889 39.130 0.00 0.00 41.45 2.74
5204 5581 4.111916 GTGTGCTTTTGTTTGCATGTAGT 58.888 39.130 0.00 0.00 41.45 2.73
5205 5582 4.026640 GTGTGCTTTTGTTTGCATGTAGTG 60.027 41.667 0.00 0.00 41.45 2.74
5206 5583 4.142293 TGTGCTTTTGTTTGCATGTAGTGA 60.142 37.500 0.00 0.00 41.45 3.41
5207 5584 4.207019 GTGCTTTTGTTTGCATGTAGTGAC 59.793 41.667 0.00 0.00 41.45 3.67
5208 5585 4.097741 TGCTTTTGTTTGCATGTAGTGACT 59.902 37.500 0.00 0.00 33.94 3.41
5209 5586 4.442073 GCTTTTGTTTGCATGTAGTGACTG 59.558 41.667 0.00 0.00 0.00 3.51
5210 5587 5.733091 GCTTTTGTTTGCATGTAGTGACTGA 60.733 40.000 0.00 0.00 0.00 3.41
5211 5588 6.389830 TTTTGTTTGCATGTAGTGACTGAT 57.610 33.333 0.00 0.00 0.00 2.90
5212 5589 7.503521 TTTTGTTTGCATGTAGTGACTGATA 57.496 32.000 0.00 0.00 0.00 2.15
5213 5590 6.726258 TTGTTTGCATGTAGTGACTGATAG 57.274 37.500 0.00 0.00 0.00 2.08
5214 5591 5.793817 TGTTTGCATGTAGTGACTGATAGT 58.206 37.500 0.00 0.00 0.00 2.12
5215 5592 6.930731 TGTTTGCATGTAGTGACTGATAGTA 58.069 36.000 0.00 0.00 0.00 1.82
5218 5595 6.715347 TGCATGTAGTGACTGATAGTATGT 57.285 37.500 0.00 0.00 0.00 2.29
5220 5597 7.203218 TGCATGTAGTGACTGATAGTATGTTC 58.797 38.462 0.00 0.00 0.00 3.18
5223 5600 9.067986 CATGTAGTGACTGATAGTATGTTCCTA 57.932 37.037 0.00 0.00 0.00 2.94
5432 5820 1.818363 TGCGTGCGTTTAACCCACA 60.818 52.632 12.48 0.00 0.00 4.17
5510 5926 2.511373 CGGCCGTGAGCATTGCTA 60.511 61.111 19.50 0.00 46.50 3.49
5533 5949 8.436970 GCTAGTGCTTTAGTCTCTAAACTTTTC 58.563 37.037 0.00 0.00 36.03 2.29
5585 6061 3.054213 CCCGGGAAAAACTTCTATACCCA 60.054 47.826 18.48 0.00 36.04 4.51
5586 6062 3.943381 CCGGGAAAAACTTCTATACCCAC 59.057 47.826 0.00 0.00 36.04 4.61
5587 6063 3.943381 CGGGAAAAACTTCTATACCCACC 59.057 47.826 0.00 0.00 36.04 4.61
5588 6064 3.943381 GGGAAAAACTTCTATACCCACCG 59.057 47.826 0.00 0.00 36.27 4.94
5589 6065 4.566278 GGGAAAAACTTCTATACCCACCGT 60.566 45.833 0.00 0.00 36.27 4.83
5590 6066 4.633126 GGAAAAACTTCTATACCCACCGTC 59.367 45.833 0.00 0.00 0.00 4.79
5591 6067 5.485620 GAAAAACTTCTATACCCACCGTCT 58.514 41.667 0.00 0.00 0.00 4.18
5592 6068 5.494390 AAAACTTCTATACCCACCGTCTT 57.506 39.130 0.00 0.00 0.00 3.01
5601 6077 1.368579 CCACCGTCTTACCCGTTGT 59.631 57.895 0.00 0.00 0.00 3.32
5610 6086 4.083696 CGTCTTACCCGTTGTGCTAAATTT 60.084 41.667 0.00 0.00 0.00 1.82
5893 6400 7.070447 TGAGATTGGGATGCCTATCTCATATAC 59.930 40.741 37.84 22.55 43.15 1.47
5896 6403 7.515004 TTGGGATGCCTATCTCATATACATT 57.485 36.000 4.35 0.00 43.15 2.71
5897 6404 6.892485 TGGGATGCCTATCTCATATACATTG 58.108 40.000 4.35 0.00 38.87 2.82
6067 6733 4.381398 GCGTGCCATCATGATCTAGTAGAT 60.381 45.833 12.62 12.62 37.73 1.98
6068 6734 5.163612 GCGTGCCATCATGATCTAGTAGATA 60.164 44.000 12.75 0.00 34.53 1.98
6069 6735 6.493978 CGTGCCATCATGATCTAGTAGATAG 58.506 44.000 12.75 6.53 34.53 2.08
6070 6736 6.094742 CGTGCCATCATGATCTAGTAGATAGT 59.905 42.308 12.75 2.13 34.53 2.12
6071 6737 7.281100 CGTGCCATCATGATCTAGTAGATAGTA 59.719 40.741 12.75 3.54 34.53 1.82
6072 6738 9.130661 GTGCCATCATGATCTAGTAGATAGTAT 57.869 37.037 12.75 5.61 34.53 2.12
6073 6739 9.129532 TGCCATCATGATCTAGTAGATAGTATG 57.870 37.037 12.75 15.71 34.53 2.39
6074 6740 9.348476 GCCATCATGATCTAGTAGATAGTATGA 57.652 37.037 23.06 23.06 34.53 2.15
6078 6744 9.389755 TCATGATCTAGTAGATAGTATGACAGC 57.610 37.037 19.94 5.97 34.53 4.40
6079 6745 9.171877 CATGATCTAGTAGATAGTATGACAGCA 57.828 37.037 12.75 3.39 34.53 4.41
6080 6746 9.919416 ATGATCTAGTAGATAGTATGACAGCAT 57.081 33.333 12.75 5.45 34.53 3.79
6081 6747 9.171877 TGATCTAGTAGATAGTATGACAGCATG 57.828 37.037 12.75 0.00 37.29 4.06
6082 6748 9.389755 GATCTAGTAGATAGTATGACAGCATGA 57.610 37.037 12.75 0.00 35.41 3.07
6083 6749 8.554835 TCTAGTAGATAGTATGACAGCATGAC 57.445 38.462 0.00 0.00 35.94 3.06
6084 6750 6.582677 AGTAGATAGTATGACAGCATGACC 57.417 41.667 0.00 0.00 39.69 4.02
6085 6751 4.511617 AGATAGTATGACAGCATGACCG 57.488 45.455 0.00 0.00 39.69 4.79
6086 6752 4.145052 AGATAGTATGACAGCATGACCGA 58.855 43.478 0.00 0.00 39.69 4.69
6087 6753 2.879002 AGTATGACAGCATGACCGAG 57.121 50.000 0.00 0.00 39.69 4.63
6088 6754 1.410517 AGTATGACAGCATGACCGAGG 59.589 52.381 0.00 0.00 39.69 4.63
6089 6755 1.137086 GTATGACAGCATGACCGAGGT 59.863 52.381 0.00 0.00 39.69 3.85
6090 6756 0.615331 ATGACAGCATGACCGAGGTT 59.385 50.000 0.00 0.00 39.69 3.50
6091 6757 0.037326 TGACAGCATGACCGAGGTTC 60.037 55.000 0.00 0.00 39.69 3.62
6092 6758 0.037326 GACAGCATGACCGAGGTTCA 60.037 55.000 0.00 0.00 39.69 3.18
6093 6759 0.396435 ACAGCATGACCGAGGTTCAA 59.604 50.000 0.00 0.00 39.69 2.69
6094 6760 0.798776 CAGCATGACCGAGGTTCAAC 59.201 55.000 0.00 0.00 39.69 3.18
6095 6761 0.321653 AGCATGACCGAGGTTCAACC 60.322 55.000 0.00 0.00 38.99 3.77
6108 6774 4.642445 GGTTCAACCTTCCTTTTCGAAA 57.358 40.909 6.47 6.47 34.73 3.46
6109 6775 4.607955 GGTTCAACCTTCCTTTTCGAAAG 58.392 43.478 10.98 5.63 34.73 2.62
6110 6776 4.337274 GGTTCAACCTTCCTTTTCGAAAGA 59.663 41.667 10.98 3.17 34.73 2.52
6111 6777 5.163591 GGTTCAACCTTCCTTTTCGAAAGAA 60.164 40.000 10.98 10.95 41.28 2.52
6112 6778 6.626402 GGTTCAACCTTCCTTTTCGAAAGAAA 60.626 38.462 10.98 6.16 45.95 2.52
6148 6814 9.574458 AATAGCAGTATGACACATATTCGATAC 57.426 33.333 0.00 0.00 39.69 2.24
6149 6815 6.981722 AGCAGTATGACACATATTCGATACA 58.018 36.000 0.00 0.00 39.69 2.29
6150 6816 7.606349 AGCAGTATGACACATATTCGATACAT 58.394 34.615 0.00 0.00 39.69 2.29
6151 6817 8.739972 AGCAGTATGACACATATTCGATACATA 58.260 33.333 0.00 0.00 39.69 2.29
6152 6818 9.521503 GCAGTATGACACATATTCGATACATAT 57.478 33.333 0.00 0.00 39.69 1.78
6157 6823 8.348285 TGACACATATTCGATACATATCTCCA 57.652 34.615 0.00 0.00 0.00 3.86
6158 6824 8.462016 TGACACATATTCGATACATATCTCCAG 58.538 37.037 0.00 0.00 0.00 3.86
6159 6825 8.354711 ACACATATTCGATACATATCTCCAGT 57.645 34.615 0.00 0.00 0.00 4.00
6160 6826 8.807118 ACACATATTCGATACATATCTCCAGTT 58.193 33.333 0.00 0.00 0.00 3.16
6161 6827 9.645059 CACATATTCGATACATATCTCCAGTTT 57.355 33.333 0.00 0.00 0.00 2.66
6162 6828 9.645059 ACATATTCGATACATATCTCCAGTTTG 57.355 33.333 0.00 0.00 0.00 2.93
6163 6829 9.645059 CATATTCGATACATATCTCCAGTTTGT 57.355 33.333 0.00 0.00 0.00 2.83
6164 6830 7.953158 ATTCGATACATATCTCCAGTTTGTG 57.047 36.000 0.00 0.00 0.00 3.33
6165 6831 5.289595 TCGATACATATCTCCAGTTTGTGC 58.710 41.667 0.00 0.00 0.00 4.57
6166 6832 5.069119 TCGATACATATCTCCAGTTTGTGCT 59.931 40.000 0.00 0.00 0.00 4.40
6167 6833 5.403766 CGATACATATCTCCAGTTTGTGCTC 59.596 44.000 0.00 0.00 0.00 4.26
6168 6834 3.878778 ACATATCTCCAGTTTGTGCTCC 58.121 45.455 0.00 0.00 0.00 4.70
6169 6835 3.264193 ACATATCTCCAGTTTGTGCTCCA 59.736 43.478 0.00 0.00 0.00 3.86
6170 6836 2.191128 ATCTCCAGTTTGTGCTCCAC 57.809 50.000 0.00 0.00 34.56 4.02
6171 6837 1.131638 TCTCCAGTTTGTGCTCCACT 58.868 50.000 0.00 0.00 35.11 4.00
6172 6838 1.490490 TCTCCAGTTTGTGCTCCACTT 59.510 47.619 0.00 0.00 35.11 3.16
6173 6839 2.092429 TCTCCAGTTTGTGCTCCACTTT 60.092 45.455 0.00 0.00 35.11 2.66
6174 6840 3.135712 TCTCCAGTTTGTGCTCCACTTTA 59.864 43.478 0.00 0.00 35.11 1.85
6175 6841 4.074970 CTCCAGTTTGTGCTCCACTTTAT 58.925 43.478 0.00 0.00 35.11 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.099071 TCCATGATTAATCCCTTTTCTTCAAAA 57.901 29.630 12.90 0.00 0.00 2.44
72 73 6.060028 TGCTACTTTGATGACTTTGTGTTC 57.940 37.500 0.00 0.00 0.00 3.18
116 117 4.396166 CCCAGAGTGAACATTACATGGTTC 59.604 45.833 0.00 1.54 42.82 3.62
216 217 1.320344 GGGATTTTTCAGGCCGGGTC 61.320 60.000 2.18 0.00 0.00 4.46
226 227 0.464036 GGGCCGGATTGGGATTTTTC 59.536 55.000 5.05 0.00 38.63 2.29
232 233 2.770904 GGTAGGGCCGGATTGGGA 60.771 66.667 5.05 0.00 38.63 4.37
236 237 2.070650 GGTCAGGTAGGGCCGGATT 61.071 63.158 5.05 0.00 43.16 3.01
240 241 2.584608 CAAGGTCAGGTAGGGCCG 59.415 66.667 0.00 0.00 43.70 6.13
241 242 2.272471 GCAAGGTCAGGTAGGGCC 59.728 66.667 0.00 0.00 37.58 5.80
338 339 2.116238 CTCATCCCGGGTCTTTTCCTA 58.884 52.381 22.86 0.00 0.00 2.94
343 344 2.680370 GGCCTCATCCCGGGTCTTT 61.680 63.158 22.86 0.71 0.00 2.52
371 372 2.831565 AGCCTGGCCCATCAATAAAAA 58.168 42.857 16.57 0.00 0.00 1.94
372 373 2.500910 CAAGCCTGGCCCATCAATAAAA 59.499 45.455 16.57 0.00 0.00 1.52
373 374 2.109774 CAAGCCTGGCCCATCAATAAA 58.890 47.619 16.57 0.00 0.00 1.40
374 375 1.688942 CCAAGCCTGGCCCATCAATAA 60.689 52.381 16.57 0.00 35.39 1.40
375 376 0.106066 CCAAGCCTGGCCCATCAATA 60.106 55.000 16.57 0.00 35.39 1.90
376 377 1.382146 CCAAGCCTGGCCCATCAAT 60.382 57.895 16.57 0.00 35.39 2.57
377 378 2.037687 CCAAGCCTGGCCCATCAA 59.962 61.111 16.57 0.00 35.39 2.57
378 379 4.064768 CCCAAGCCTGGCCCATCA 62.065 66.667 16.57 0.00 41.99 3.07
389 390 2.158957 GCCCTAAAAATTAGGCCCAAGC 60.159 50.000 10.11 5.02 39.60 4.01
390 391 3.819564 GCCCTAAAAATTAGGCCCAAG 57.180 47.619 10.11 0.00 39.60 3.61
395 396 2.159156 CCGTTGGCCCTAAAAATTAGGC 60.159 50.000 0.00 0.00 44.99 3.93
396 397 2.159156 GCCGTTGGCCCTAAAAATTAGG 60.159 50.000 0.00 8.85 44.06 2.69
397 398 3.159353 GCCGTTGGCCCTAAAAATTAG 57.841 47.619 0.00 0.00 44.06 1.73
412 413 4.021925 GAGCCTGTCCCAGCCGTT 62.022 66.667 0.00 0.00 0.00 4.44
425 426 0.903236 AGAAAACCTAGGACCGAGCC 59.097 55.000 17.98 0.00 0.00 4.70
436 437 0.683412 AAGCCCGACGTAGAAAACCT 59.317 50.000 0.00 0.00 0.00 3.50
479 480 6.156256 GGTACCATGATTATACCTAGCCATCA 59.844 42.308 7.15 0.00 36.26 3.07
775 776 0.526524 GCGCTACTCAGCTACTGGTG 60.527 60.000 0.00 0.00 46.26 4.17
848 850 2.569404 GTCAGAGGGTGAGATGGTCTTT 59.431 50.000 0.00 0.00 35.13 2.52
889 904 0.110486 TTTGGAAGTGGGGAGCAGAC 59.890 55.000 0.00 0.00 0.00 3.51
1201 1238 1.673337 GTAACCAGGGGACGGCAAC 60.673 63.158 0.00 0.00 0.00 4.17
1217 1259 3.195610 AGAACACATTCTGAGCATCCGTA 59.804 43.478 0.00 0.00 43.86 4.02
1220 1262 4.699257 AGAAAGAACACATTCTGAGCATCC 59.301 41.667 0.00 0.00 44.82 3.51
1221 1263 5.876612 AGAAAGAACACATTCTGAGCATC 57.123 39.130 0.00 0.00 44.82 3.91
1231 1283 7.855784 AATTAAAGGGGAAGAAAGAACACAT 57.144 32.000 0.00 0.00 0.00 3.21
1263 1315 0.741221 CACGGCTTTCTACCTGGAGC 60.741 60.000 0.00 0.00 0.00 4.70
1365 1417 2.181777 GGTGAGCGTCATCTGCGA 59.818 61.111 0.00 0.00 37.44 5.10
1429 1481 2.811317 GGCGAAGTGACGAGCAGG 60.811 66.667 0.00 0.00 35.09 4.85
1443 1495 3.624326 TTCAGACAAATTTCAGTGGCG 57.376 42.857 0.00 0.00 0.00 5.69
1602 1664 1.134551 TGCTGCGCCAGTGTGATATTA 60.135 47.619 4.18 0.00 33.43 0.98
1604 1666 0.812811 CTGCTGCGCCAGTGTGATAT 60.813 55.000 4.18 0.00 33.43 1.63
1605 1667 1.448365 CTGCTGCGCCAGTGTGATA 60.448 57.895 4.18 0.00 33.43 2.15
1617 1679 0.948141 AGAAACTGTCGAGCTGCTGC 60.948 55.000 7.01 7.62 40.05 5.25
1642 1704 5.528043 ACATCACACCACTGCATTTTTAA 57.472 34.783 0.00 0.00 0.00 1.52
1643 1705 5.288015 CAACATCACACCACTGCATTTTTA 58.712 37.500 0.00 0.00 0.00 1.52
1644 1706 4.121317 CAACATCACACCACTGCATTTTT 58.879 39.130 0.00 0.00 0.00 1.94
1649 1711 0.750911 TGCAACATCACACCACTGCA 60.751 50.000 0.00 0.00 37.46 4.41
1650 1712 0.599558 ATGCAACATCACACCACTGC 59.400 50.000 0.00 0.00 0.00 4.40
1681 1743 3.212685 CCTTGAGATCCCTGAATCAAGC 58.787 50.000 12.41 0.00 44.64 4.01
1682 1744 4.450053 GACCTTGAGATCCCTGAATCAAG 58.550 47.826 11.36 11.36 45.26 3.02
1683 1745 3.118629 CGACCTTGAGATCCCTGAATCAA 60.119 47.826 0.00 0.00 0.00 2.57
1851 1913 1.675641 GTTCGCACCATCTTGGGCT 60.676 57.895 0.00 0.00 43.37 5.19
1862 1924 2.504244 CCGTCTCCTCGTTCGCAC 60.504 66.667 0.00 0.00 0.00 5.34
1865 1927 1.514443 GAAGCCGTCTCCTCGTTCG 60.514 63.158 0.00 0.00 0.00 3.95
1916 1978 2.117423 TCTGTGAGTCCGGGCTGA 59.883 61.111 16.74 0.00 0.00 4.26
1965 2027 0.041238 AGGTCGACATGGAGGAGGAA 59.959 55.000 18.91 0.00 0.00 3.36
1975 2037 2.758737 GGGGTCCGAGGTCGACAT 60.759 66.667 18.91 11.04 43.02 3.06
2051 2116 3.688673 CACATCCTCTGCTTCTTCTTTCC 59.311 47.826 0.00 0.00 0.00 3.13
2055 2123 1.558756 CCCACATCCTCTGCTTCTTCT 59.441 52.381 0.00 0.00 0.00 2.85
2112 2180 4.402155 TCTGAAGCACACAGTGGAAAAATT 59.598 37.500 5.31 0.00 36.81 1.82
2117 2185 2.170397 TCTTCTGAAGCACACAGTGGAA 59.830 45.455 12.54 0.00 36.81 3.53
2166 2238 4.367450 CATCCTCGGATTCTTCTTCTGTC 58.633 47.826 0.00 0.00 31.62 3.51
2167 2239 3.431486 GCATCCTCGGATTCTTCTTCTGT 60.431 47.826 0.00 0.00 31.62 3.41
2168 2240 3.129871 GCATCCTCGGATTCTTCTTCTG 58.870 50.000 0.00 0.00 31.62 3.02
2192 2270 4.887748 TGAGTTTGACAGAGGAGATGTTC 58.112 43.478 0.00 0.00 0.00 3.18
2227 2310 1.739466 TGAAGCACGCAATGGAGAATC 59.261 47.619 0.00 0.00 0.00 2.52
2304 2387 0.861837 GGTCTGTTGAGCTTGACACG 59.138 55.000 0.00 0.00 37.68 4.49
2338 2421 2.866156 TGTCTGTTTCTGAAGCGAACAG 59.134 45.455 11.81 11.81 36.80 3.16
2436 2523 2.564771 TCTGAAACACAAGCTGGAGTG 58.435 47.619 11.40 11.40 41.40 3.51
2437 2524 3.281727 TTCTGAAACACAAGCTGGAGT 57.718 42.857 0.00 0.00 0.00 3.85
2438 2525 3.879295 TCTTTCTGAAACACAAGCTGGAG 59.121 43.478 0.00 0.00 0.00 3.86
2479 2566 4.005650 AGTACATGGACAGTTTCTGCATG 58.994 43.478 11.55 12.34 37.69 4.06
2480 2567 4.292186 AGTACATGGACAGTTTCTGCAT 57.708 40.909 11.55 0.00 34.37 3.96
2481 2568 3.769739 AGTACATGGACAGTTTCTGCA 57.230 42.857 11.55 0.00 34.37 4.41
2482 2569 5.521735 CAGATAGTACATGGACAGTTTCTGC 59.478 44.000 11.55 0.00 34.37 4.26
2483 2570 6.754209 GTCAGATAGTACATGGACAGTTTCTG 59.246 42.308 11.55 15.14 37.52 3.02
2494 2608 5.009510 CACTCTCAGGGTCAGATAGTACATG 59.990 48.000 0.00 0.00 0.00 3.21
2533 2659 0.036952 TGAGGAGTTGCAGCTGTAGC 60.037 55.000 16.64 13.51 42.49 3.58
2534 2660 1.405256 CCTGAGGAGTTGCAGCTGTAG 60.405 57.143 16.64 0.58 0.00 2.74
2535 2661 0.610174 CCTGAGGAGTTGCAGCTGTA 59.390 55.000 16.64 8.31 0.00 2.74
2536 2662 1.374190 CCTGAGGAGTTGCAGCTGT 59.626 57.895 16.64 0.00 0.00 4.40
2537 2663 2.039405 GCCTGAGGAGTTGCAGCTG 61.039 63.158 8.19 10.11 0.00 4.24
2538 2664 2.350514 GCCTGAGGAGTTGCAGCT 59.649 61.111 0.65 1.30 0.00 4.24
2539 2665 2.033141 TGCCTGAGGAGTTGCAGC 59.967 61.111 0.65 0.00 0.00 5.25
2540 2666 1.673665 GGTGCCTGAGGAGTTGCAG 60.674 63.158 0.65 0.00 33.80 4.41
2557 2683 3.285215 GGCTGCCGCTGATGATGG 61.285 66.667 1.35 0.00 36.09 3.51
2625 2751 3.647771 GGTGTGGGTCTGGGGGAC 61.648 72.222 0.00 0.00 43.79 4.46
2637 2763 3.353836 CTTCGGCGGGTTGGTGTG 61.354 66.667 7.21 0.00 0.00 3.82
3033 3159 2.575993 CTGAGCACCTCCACCTCG 59.424 66.667 0.00 0.00 0.00 4.63
3066 3192 0.295763 CGATGAGCATGACGACGTTG 59.704 55.000 0.13 0.00 0.00 4.10
3147 3273 4.277174 AGCTTACCATAGAGATGAGTGTCG 59.723 45.833 0.00 0.00 34.73 4.35
3183 3309 4.142600 ACACTGAGTTTCTGAGTTTTGCAC 60.143 41.667 0.00 0.00 0.00 4.57
3188 3314 4.832248 TGTCACACTGAGTTTCTGAGTTT 58.168 39.130 0.00 0.00 0.00 2.66
3189 3315 4.471904 TGTCACACTGAGTTTCTGAGTT 57.528 40.909 0.00 0.00 0.00 3.01
3190 3316 4.471904 TTGTCACACTGAGTTTCTGAGT 57.528 40.909 0.00 0.00 0.00 3.41
3191 3317 5.998454 ATTTGTCACACTGAGTTTCTGAG 57.002 39.130 0.00 0.00 0.00 3.35
3192 3318 5.879777 TGAATTTGTCACACTGAGTTTCTGA 59.120 36.000 0.00 0.00 0.00 3.27
3193 3319 6.122850 TGAATTTGTCACACTGAGTTTCTG 57.877 37.500 0.00 0.00 0.00 3.02
3194 3320 5.220931 GCTGAATTTGTCACACTGAGTTTCT 60.221 40.000 0.00 0.00 31.13 2.52
3195 3321 4.972440 GCTGAATTTGTCACACTGAGTTTC 59.028 41.667 0.00 0.00 31.13 2.78
3218 3344 3.865224 GCAAGGTGCATTTTTCAACAG 57.135 42.857 0.00 0.00 44.26 3.16
3230 3356 5.393962 CAATAAGTTCAGTTAGCAAGGTGC 58.606 41.667 0.00 0.00 45.46 5.01
3231 3357 5.473504 ACCAATAAGTTCAGTTAGCAAGGTG 59.526 40.000 0.00 0.00 0.00 4.00
3233 3359 6.016276 ACAACCAATAAGTTCAGTTAGCAAGG 60.016 38.462 0.00 0.00 0.00 3.61
3234 3360 6.970484 ACAACCAATAAGTTCAGTTAGCAAG 58.030 36.000 0.00 0.00 0.00 4.01
3235 3361 6.952773 ACAACCAATAAGTTCAGTTAGCAA 57.047 33.333 0.00 0.00 0.00 3.91
3250 3416 3.144506 CTGACAGAGAGCAACAACCAAT 58.855 45.455 0.00 0.00 0.00 3.16
3269 3435 1.374758 GTCTCCTTGTGACGGCCTG 60.375 63.158 0.00 0.00 0.00 4.85
3304 3470 1.448540 CAACCGCGATCTTCTGCCT 60.449 57.895 8.23 0.00 0.00 4.75
3476 3648 6.544038 AAAGTAAATTTCAATGCTGGCAAC 57.456 33.333 0.00 0.00 0.00 4.17
3537 3709 4.202524 TGAACAGGTATGTGGTAAGCCTTT 60.203 41.667 0.00 0.00 40.39 3.11
3540 3712 3.343941 TGAACAGGTATGTGGTAAGCC 57.656 47.619 0.00 0.00 40.39 4.35
3557 3734 7.039152 TGGCTCATGATTAAGTTCCAAAATGAA 60.039 33.333 0.00 0.00 0.00 2.57
3582 3759 6.255887 CACGGAGGTAGTTCTTATTTAGCTTG 59.744 42.308 0.00 0.00 0.00 4.01
3589 3766 6.600882 TTCTTCACGGAGGTAGTTCTTATT 57.399 37.500 0.00 0.00 0.00 1.40
3590 3767 6.600882 TTTCTTCACGGAGGTAGTTCTTAT 57.399 37.500 0.00 0.00 0.00 1.73
3595 3779 8.302515 TCTTATATTTCTTCACGGAGGTAGTT 57.697 34.615 0.00 0.00 0.00 2.24
3599 3783 5.128827 TGCTCTTATATTTCTTCACGGAGGT 59.871 40.000 0.00 0.00 0.00 3.85
3632 3816 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3633 3817 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3675 3911 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3691 3927 9.463902 GCTAAGATAACATATACTCCCTCTGTA 57.536 37.037 0.00 0.00 0.00 2.74
3699 3935 7.616150 TCTGGGGAGCTAAGATAACATATACTC 59.384 40.741 0.00 0.00 0.00 2.59
3715 3951 3.686691 GCAATAATCAAGTCTGGGGAGCT 60.687 47.826 0.00 0.00 0.00 4.09
3721 3957 5.633830 ACAGTTGCAATAATCAAGTCTGG 57.366 39.130 0.59 0.00 0.00 3.86
3727 3963 6.700960 CCAGAAACAACAGTTGCAATAATCAA 59.299 34.615 13.56 0.00 0.00 2.57
3740 3976 5.163663 TGAGTAACAAAGCCAGAAACAACAG 60.164 40.000 0.00 0.00 0.00 3.16
3756 3992 6.929049 CCAGACACTGAGTTTTATGAGTAACA 59.071 38.462 0.00 0.00 32.44 2.41
3761 3997 5.541845 TGACCAGACACTGAGTTTTATGAG 58.458 41.667 0.00 0.00 32.44 2.90
3767 4003 2.105477 AGCATGACCAGACACTGAGTTT 59.895 45.455 0.00 0.00 32.44 2.66
3776 4012 8.715998 CATAATAAATCTACAGCATGACCAGAC 58.284 37.037 0.00 0.00 39.69 3.51
3777 4013 7.388776 GCATAATAAATCTACAGCATGACCAGA 59.611 37.037 0.00 0.00 39.69 3.86
3778 4014 7.173735 TGCATAATAAATCTACAGCATGACCAG 59.826 37.037 0.00 0.00 39.69 4.00
3779 4015 6.997476 TGCATAATAAATCTACAGCATGACCA 59.003 34.615 0.00 0.00 39.69 4.02
3780 4016 7.173907 ACTGCATAATAAATCTACAGCATGACC 59.826 37.037 0.00 0.00 39.69 4.02
3781 4017 8.092521 ACTGCATAATAAATCTACAGCATGAC 57.907 34.615 0.00 0.00 39.69 3.06
3782 4018 8.681486 AACTGCATAATAAATCTACAGCATGA 57.319 30.769 0.00 0.00 39.69 3.07
3785 4021 8.559536 GCTTAACTGCATAATAAATCTACAGCA 58.440 33.333 0.00 0.00 0.00 4.41
3786 4022 7.742089 CGCTTAACTGCATAATAAATCTACAGC 59.258 37.037 0.00 0.00 0.00 4.40
3787 4023 8.765219 ACGCTTAACTGCATAATAAATCTACAG 58.235 33.333 0.00 0.00 0.00 2.74
3788 4024 8.547894 CACGCTTAACTGCATAATAAATCTACA 58.452 33.333 0.00 0.00 0.00 2.74
3789 4025 8.761497 TCACGCTTAACTGCATAATAAATCTAC 58.239 33.333 0.00 0.00 0.00 2.59
3790 4026 8.761497 GTCACGCTTAACTGCATAATAAATCTA 58.239 33.333 0.00 0.00 0.00 1.98
3791 4027 7.279981 TGTCACGCTTAACTGCATAATAAATCT 59.720 33.333 0.00 0.00 0.00 2.40
3792 4028 7.406553 TGTCACGCTTAACTGCATAATAAATC 58.593 34.615 0.00 0.00 0.00 2.17
3793 4029 7.279981 TCTGTCACGCTTAACTGCATAATAAAT 59.720 33.333 0.00 0.00 0.00 1.40
3794 4030 6.592220 TCTGTCACGCTTAACTGCATAATAAA 59.408 34.615 0.00 0.00 0.00 1.40
3795 4031 6.103330 TCTGTCACGCTTAACTGCATAATAA 58.897 36.000 0.00 0.00 0.00 1.40
3796 4032 5.656480 TCTGTCACGCTTAACTGCATAATA 58.344 37.500 0.00 0.00 0.00 0.98
3797 4033 4.503910 TCTGTCACGCTTAACTGCATAAT 58.496 39.130 0.00 0.00 0.00 1.28
3798 4034 3.920446 TCTGTCACGCTTAACTGCATAA 58.080 40.909 0.00 0.00 0.00 1.90
3799 4035 3.586100 TCTGTCACGCTTAACTGCATA 57.414 42.857 0.00 0.00 0.00 3.14
3800 4036 2.455674 TCTGTCACGCTTAACTGCAT 57.544 45.000 0.00 0.00 0.00 3.96
3801 4037 2.232756 TTCTGTCACGCTTAACTGCA 57.767 45.000 0.00 0.00 0.00 4.41
3802 4038 3.058914 ACAATTCTGTCACGCTTAACTGC 60.059 43.478 0.00 0.00 0.00 4.40
3803 4039 4.732285 ACAATTCTGTCACGCTTAACTG 57.268 40.909 0.00 0.00 0.00 3.16
3835 4071 0.243636 AAAACCTGGCATAGCAACGC 59.756 50.000 0.00 0.00 0.00 4.84
3849 4085 7.439655 TCAAATGTAATGTAACAAGCCAAAACC 59.560 33.333 0.00 0.00 32.02 3.27
3861 4097 9.638239 GAAATTTCAGGCTCAAATGTAATGTAA 57.362 29.630 13.40 0.00 0.00 2.41
3862 4098 8.250332 GGAAATTTCAGGCTCAAATGTAATGTA 58.750 33.333 19.49 0.00 0.00 2.29
3863 4099 7.038799 AGGAAATTTCAGGCTCAAATGTAATGT 60.039 33.333 19.49 0.00 0.00 2.71
3864 4100 7.325694 AGGAAATTTCAGGCTCAAATGTAATG 58.674 34.615 19.49 0.00 0.00 1.90
3865 4101 7.178983 TGAGGAAATTTCAGGCTCAAATGTAAT 59.821 33.333 19.49 0.00 0.00 1.89
3881 4117 5.078949 TGTCACACCATCATGAGGAAATTT 58.921 37.500 9.37 0.00 0.00 1.82
3959 4195 1.730501 ATGTGCCGATGACTCTTGTG 58.269 50.000 0.00 0.00 0.00 3.33
3971 4207 2.047274 ACTCACCCGAATGTGCCG 60.047 61.111 0.00 0.00 36.17 5.69
4027 4263 8.899427 TCAGATTTGCCAAATTTCACAAATTA 57.101 26.923 20.68 11.93 41.48 1.40
4028 4264 7.804843 TCAGATTTGCCAAATTTCACAAATT 57.195 28.000 20.68 12.53 41.48 1.82
4029 4265 7.804843 TTCAGATTTGCCAAATTTCACAAAT 57.195 28.000 20.19 20.19 43.45 2.32
4030 4266 7.621428 TTTCAGATTTGCCAAATTTCACAAA 57.379 28.000 14.34 14.34 36.53 2.83
4090 4332 0.744414 TTTGCCCGCTCTGAGCATAC 60.744 55.000 27.46 16.23 42.58 2.39
4096 4338 0.742990 CGGTAATTTGCCCGCTCTGA 60.743 55.000 0.00 0.00 37.43 3.27
4192 4434 3.511610 AACTGCTGGCCCTTGGGT 61.512 61.111 0.00 0.00 0.00 4.51
4265 4513 6.492087 ACGGTGGAAAATAAATTCAGAAAGGA 59.508 34.615 0.00 0.00 0.00 3.36
4306 4555 4.511527 ACCATTTAGCAGTGATCAGAGTG 58.488 43.478 0.00 0.00 0.00 3.51
4315 4564 5.240623 TGGTGAAAACTACCATTTAGCAGTG 59.759 40.000 0.00 0.00 43.00 3.66
4316 4565 5.381757 TGGTGAAAACTACCATTTAGCAGT 58.618 37.500 0.00 0.00 43.00 4.40
4392 4760 9.471702 ACATCATCTGAATATATGGATTTTCCC 57.528 33.333 0.00 0.00 35.03 3.97
4398 4766 9.102757 GCGTAAACATCATCTGAATATATGGAT 57.897 33.333 0.00 0.00 0.00 3.41
4399 4767 7.549134 GGCGTAAACATCATCTGAATATATGGA 59.451 37.037 0.00 0.00 0.00 3.41
4400 4768 7.334171 TGGCGTAAACATCATCTGAATATATGG 59.666 37.037 0.00 0.00 0.00 2.74
4401 4769 8.255394 TGGCGTAAACATCATCTGAATATATG 57.745 34.615 0.00 0.00 0.00 1.78
4402 4770 8.886719 CATGGCGTAAACATCATCTGAATATAT 58.113 33.333 0.00 0.00 0.00 0.86
4405 4773 6.287525 TCATGGCGTAAACATCATCTGAATA 58.712 36.000 0.00 0.00 0.00 1.75
4406 4774 5.125356 TCATGGCGTAAACATCATCTGAAT 58.875 37.500 0.00 0.00 0.00 2.57
4408 4776 4.122046 CTCATGGCGTAAACATCATCTGA 58.878 43.478 0.00 0.00 0.00 3.27
4409 4777 3.303593 GCTCATGGCGTAAACATCATCTG 60.304 47.826 0.00 0.00 0.00 2.90
4412 4780 1.949525 GGCTCATGGCGTAAACATCAT 59.050 47.619 0.00 0.00 42.94 2.45
4413 4781 1.339535 TGGCTCATGGCGTAAACATCA 60.340 47.619 0.00 0.00 42.94 3.07
4414 4782 1.378531 TGGCTCATGGCGTAAACATC 58.621 50.000 0.00 0.00 42.94 3.06
4415 4783 1.832883 TTGGCTCATGGCGTAAACAT 58.167 45.000 0.00 0.00 42.94 2.71
4417 4785 3.563808 TCATATTGGCTCATGGCGTAAAC 59.436 43.478 0.00 0.00 42.94 2.01
4418 4786 3.814625 TCATATTGGCTCATGGCGTAAA 58.185 40.909 0.00 0.00 42.94 2.01
4419 4787 3.483808 TCATATTGGCTCATGGCGTAA 57.516 42.857 0.00 0.00 42.94 3.18
4422 4790 2.620115 AGTTTCATATTGGCTCATGGCG 59.380 45.455 0.00 0.00 42.94 5.69
4423 4791 3.243636 CCAGTTTCATATTGGCTCATGGC 60.244 47.826 0.00 0.00 40.90 4.40
4424 4792 4.579454 CCAGTTTCATATTGGCTCATGG 57.421 45.455 0.00 0.00 0.00 3.66
4462 4830 1.696884 TGGAGCATGAACAGGTACACA 59.303 47.619 0.00 0.00 0.00 3.72
4463 4831 2.472695 TGGAGCATGAACAGGTACAC 57.527 50.000 0.00 0.00 0.00 2.90
4464 4832 2.571202 TGATGGAGCATGAACAGGTACA 59.429 45.455 0.00 0.00 0.00 2.90
4465 4833 3.201290 CTGATGGAGCATGAACAGGTAC 58.799 50.000 0.00 0.00 0.00 3.34
4517 4888 1.328680 CCCAGATGAATCGAAACAGCG 59.671 52.381 0.00 0.00 0.00 5.18
4585 4956 5.036916 AGGGAACAGGGTCAGAACATATTA 58.963 41.667 0.00 0.00 0.00 0.98
4764 5135 5.366829 ACATTTGACTGACATGTGACATG 57.633 39.130 22.97 22.97 0.00 3.21
4770 5141 3.569701 GTGGGAACATTTGACTGACATGT 59.430 43.478 0.00 0.00 46.14 3.21
4785 5156 2.607180 GTGCAAATGTTTGTGTGGGAAC 59.393 45.455 7.26 0.00 40.24 3.62
4803 5174 1.978473 TGAGAGCTTCAGAGGGTGC 59.022 57.895 0.00 0.00 0.00 5.01
4843 5214 3.939066 AGAAAGGTAAGCAACTACGCAT 58.061 40.909 0.00 0.00 0.00 4.73
4847 5224 5.548406 TCAGGAAGAAAGGTAAGCAACTAC 58.452 41.667 0.00 0.00 0.00 2.73
4914 5291 2.363975 GCCGGACTCCACCACCATA 61.364 63.158 5.05 0.00 0.00 2.74
5100 5477 1.960040 TAGACAGGCCCTGCACATCG 61.960 60.000 11.63 0.00 34.37 3.84
5189 5566 6.710295 ACTATCAGTCACTACATGCAAACAAA 59.290 34.615 0.00 0.00 0.00 2.83
5190 5567 6.230472 ACTATCAGTCACTACATGCAAACAA 58.770 36.000 0.00 0.00 0.00 2.83
5192 5569 7.492669 ACATACTATCAGTCACTACATGCAAAC 59.507 37.037 0.00 0.00 0.00 2.93
5200 5577 9.069082 ACATAGGAACATACTATCAGTCACTAC 57.931 37.037 0.00 0.00 0.00 2.73
5202 5579 8.540507 AACATAGGAACATACTATCAGTCACT 57.459 34.615 0.00 0.00 0.00 3.41
5212 5589 8.150945 CCACTGCTATAAACATAGGAACATACT 58.849 37.037 0.00 0.00 0.00 2.12
5213 5590 8.148351 TCCACTGCTATAAACATAGGAACATAC 58.852 37.037 0.00 0.00 0.00 2.39
5214 5591 8.257602 TCCACTGCTATAAACATAGGAACATA 57.742 34.615 0.00 0.00 0.00 2.29
5215 5592 7.136822 TCCACTGCTATAAACATAGGAACAT 57.863 36.000 0.00 0.00 0.00 2.71
5218 5595 8.271458 TCAATTCCACTGCTATAAACATAGGAA 58.729 33.333 0.00 0.00 35.58 3.36
5220 5597 7.933577 TCTCAATTCCACTGCTATAAACATAGG 59.066 37.037 0.00 0.00 0.00 2.57
5223 5600 8.462016 GTTTCTCAATTCCACTGCTATAAACAT 58.538 33.333 0.00 0.00 0.00 2.71
5357 5743 1.415659 CACAGCTGGCCTAGATAGCTT 59.584 52.381 19.93 2.12 44.87 3.74
5432 5820 3.067106 ACGTTTCAAGCTTCATCATCGT 58.933 40.909 0.00 0.53 0.00 3.73
5510 5926 8.966069 AAGAAAAGTTTAGAGACTAAAGCACT 57.034 30.769 4.51 0.00 0.00 4.40
5585 6061 1.301165 GCACAACGGGTAAGACGGT 60.301 57.895 0.00 0.00 35.23 4.83
5586 6062 0.244450 TAGCACAACGGGTAAGACGG 59.756 55.000 0.00 0.00 35.23 4.79
5587 6063 2.068837 TTAGCACAACGGGTAAGACG 57.931 50.000 0.00 0.00 37.36 4.18
5588 6064 5.366829 AAATTTAGCACAACGGGTAAGAC 57.633 39.130 0.00 0.00 32.89 3.01
5589 6065 5.531659 TCAAAATTTAGCACAACGGGTAAGA 59.468 36.000 0.00 0.00 32.89 2.10
5590 6066 5.764131 TCAAAATTTAGCACAACGGGTAAG 58.236 37.500 0.00 0.00 32.89 2.34
5591 6067 5.531659 TCTCAAAATTTAGCACAACGGGTAA 59.468 36.000 0.00 0.00 0.00 2.85
5592 6068 5.064558 TCTCAAAATTTAGCACAACGGGTA 58.935 37.500 0.00 0.00 0.00 3.69
5601 6077 9.017509 AGTGATCAAGAATCTCAAAATTTAGCA 57.982 29.630 0.00 0.00 35.24 3.49
5769 6276 4.761739 ACGAATCATCCACAGTTGATTTGT 59.238 37.500 11.42 11.42 44.66 2.83
5871 6378 7.702807 ATGTATATGAGATAGGCATCCCAAT 57.297 36.000 0.00 0.00 0.00 3.16
5893 6400 9.104965 TCCCGTTATACTGTTTCTTAATCAATG 57.895 33.333 0.00 0.00 0.00 2.82
5896 6403 7.613585 TGTCCCGTTATACTGTTTCTTAATCA 58.386 34.615 0.00 0.00 0.00 2.57
5897 6404 7.977853 TCTGTCCCGTTATACTGTTTCTTAATC 59.022 37.037 0.00 0.00 0.00 1.75
6047 6713 9.129532 CATACTATCTACTAGATCATGATGGCA 57.870 37.037 14.30 0.00 36.20 4.92
6067 6733 2.623416 CCTCGGTCATGCTGTCATACTA 59.377 50.000 0.00 0.00 0.00 1.82
6068 6734 1.410517 CCTCGGTCATGCTGTCATACT 59.589 52.381 0.00 0.00 0.00 2.12
6069 6735 1.137086 ACCTCGGTCATGCTGTCATAC 59.863 52.381 0.00 0.00 0.00 2.39
6070 6736 1.485124 ACCTCGGTCATGCTGTCATA 58.515 50.000 0.00 0.00 0.00 2.15
6071 6737 0.615331 AACCTCGGTCATGCTGTCAT 59.385 50.000 0.00 0.00 0.00 3.06
6072 6738 0.037326 GAACCTCGGTCATGCTGTCA 60.037 55.000 0.00 0.00 0.00 3.58
6073 6739 0.037326 TGAACCTCGGTCATGCTGTC 60.037 55.000 0.00 0.00 0.00 3.51
6074 6740 0.396435 TTGAACCTCGGTCATGCTGT 59.604 50.000 0.00 0.00 0.00 4.40
6075 6741 0.798776 GTTGAACCTCGGTCATGCTG 59.201 55.000 0.00 0.00 0.00 4.41
6076 6742 0.321653 GGTTGAACCTCGGTCATGCT 60.322 55.000 7.20 0.00 34.73 3.79
6077 6743 2.171635 GGTTGAACCTCGGTCATGC 58.828 57.895 7.20 0.00 34.73 4.06
6086 6752 8.715439 TTTCTTTCGAAAAGGAAGGTTGAACCT 61.715 37.037 11.91 11.91 42.38 3.50
6087 6753 4.337274 TCTTTCGAAAAGGAAGGTTGAACC 59.663 41.667 12.41 6.16 38.99 3.62
6088 6754 5.494632 TCTTTCGAAAAGGAAGGTTGAAC 57.505 39.130 12.41 0.00 0.00 3.18
6089 6755 6.518208 TTTCTTTCGAAAAGGAAGGTTGAA 57.482 33.333 12.41 5.77 36.26 2.69
6090 6756 6.518208 TTTTCTTTCGAAAAGGAAGGTTGA 57.482 33.333 12.41 0.00 42.51 3.18
6091 6757 7.770801 ATTTTTCTTTCGAAAAGGAAGGTTG 57.229 32.000 12.41 0.00 46.45 3.77
6122 6788 9.574458 GTATCGAATATGTGTCATACTGCTATT 57.426 33.333 0.00 0.00 0.00 1.73
6123 6789 8.739972 TGTATCGAATATGTGTCATACTGCTAT 58.260 33.333 0.00 0.00 0.00 2.97
6124 6790 8.106247 TGTATCGAATATGTGTCATACTGCTA 57.894 34.615 0.00 0.00 0.00 3.49
6125 6791 6.981722 TGTATCGAATATGTGTCATACTGCT 58.018 36.000 0.00 0.00 0.00 4.24
6126 6792 7.818493 ATGTATCGAATATGTGTCATACTGC 57.182 36.000 0.00 0.00 0.00 4.40
6131 6797 8.971073 TGGAGATATGTATCGAATATGTGTCAT 58.029 33.333 0.00 0.00 37.76 3.06
6132 6798 8.348285 TGGAGATATGTATCGAATATGTGTCA 57.652 34.615 0.00 0.00 37.76 3.58
6133 6799 8.462811 ACTGGAGATATGTATCGAATATGTGTC 58.537 37.037 0.00 0.00 37.76 3.67
6134 6800 8.354711 ACTGGAGATATGTATCGAATATGTGT 57.645 34.615 0.00 0.00 37.76 3.72
6135 6801 9.645059 AAACTGGAGATATGTATCGAATATGTG 57.355 33.333 0.00 0.00 37.76 3.21
6136 6802 9.645059 CAAACTGGAGATATGTATCGAATATGT 57.355 33.333 0.00 0.00 37.76 2.29
6137 6803 9.645059 ACAAACTGGAGATATGTATCGAATATG 57.355 33.333 0.00 0.00 37.76 1.78
6138 6804 9.645059 CACAAACTGGAGATATGTATCGAATAT 57.355 33.333 0.00 0.00 37.76 1.28
6139 6805 7.598869 GCACAAACTGGAGATATGTATCGAATA 59.401 37.037 0.00 0.00 37.76 1.75
6140 6806 6.425114 GCACAAACTGGAGATATGTATCGAAT 59.575 38.462 0.00 0.00 37.76 3.34
6141 6807 5.753438 GCACAAACTGGAGATATGTATCGAA 59.247 40.000 0.00 0.00 37.76 3.71
6142 6808 5.069119 AGCACAAACTGGAGATATGTATCGA 59.931 40.000 0.00 0.00 37.76 3.59
6143 6809 5.292765 AGCACAAACTGGAGATATGTATCG 58.707 41.667 0.00 0.00 37.76 2.92
6144 6810 5.698545 GGAGCACAAACTGGAGATATGTATC 59.301 44.000 0.00 0.00 0.00 2.24
6145 6811 5.130975 TGGAGCACAAACTGGAGATATGTAT 59.869 40.000 0.00 0.00 0.00 2.29
6146 6812 4.469586 TGGAGCACAAACTGGAGATATGTA 59.530 41.667 0.00 0.00 0.00 2.29
6147 6813 3.264193 TGGAGCACAAACTGGAGATATGT 59.736 43.478 0.00 0.00 0.00 2.29
6148 6814 3.624861 GTGGAGCACAAACTGGAGATATG 59.375 47.826 0.00 0.00 34.08 1.78
6149 6815 3.521126 AGTGGAGCACAAACTGGAGATAT 59.479 43.478 0.00 0.00 36.74 1.63
6150 6816 2.906389 AGTGGAGCACAAACTGGAGATA 59.094 45.455 0.00 0.00 36.74 1.98
6151 6817 1.701847 AGTGGAGCACAAACTGGAGAT 59.298 47.619 0.00 0.00 36.74 2.75
6152 6818 1.131638 AGTGGAGCACAAACTGGAGA 58.868 50.000 0.00 0.00 36.74 3.71
6153 6819 1.972872 AAGTGGAGCACAAACTGGAG 58.027 50.000 0.00 0.00 36.74 3.86
6154 6820 2.435372 AAAGTGGAGCACAAACTGGA 57.565 45.000 0.00 0.00 36.74 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.