Multiple sequence alignment - TraesCS1B01G467100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G467100 chr1B 100.000 4558 0 0 1 4558 677089894 677094451 0.000000e+00 8418.0
1 TraesCS1B01G467100 chr1A 92.333 3091 164 32 734 3801 583892214 583895254 0.000000e+00 4327.0
2 TraesCS1B01G467100 chr1A 90.147 680 53 6 15 681 405871704 405871026 0.000000e+00 872.0
3 TraesCS1B01G467100 chr1D 92.030 2936 173 31 1370 4262 486155752 486158669 0.000000e+00 4069.0
4 TraesCS1B01G467100 chr1D 93.603 297 15 4 4262 4558 486158702 486158994 1.510000e-119 440.0
5 TraesCS1B01G467100 chr1D 80.826 339 37 20 804 1121 486155260 486155591 1.640000e-59 241.0
6 TraesCS1B01G467100 chr1D 81.413 269 20 16 3538 3802 486245136 486245378 4.650000e-45 193.0
7 TraesCS1B01G467100 chr5B 85.422 391 43 9 1 378 598399905 598399516 1.190000e-105 394.0
8 TraesCS1B01G467100 chr5B 89.831 59 5 1 612 669 664498383 664498325 1.760000e-09 75.0
9 TraesCS1B01G467100 chr5B 86.765 68 8 1 607 674 688969262 688969196 1.760000e-09 75.0
10 TraesCS1B01G467100 chr5B 85.965 57 7 1 249 304 578544649 578544593 4.920000e-05 60.2
11 TraesCS1B01G467100 chr5A 85.337 341 47 3 1372 1712 486063314 486063651 2.610000e-92 350.0
12 TraesCS1B01G467100 chr5A 83.529 85 9 2 1064 1143 486063097 486063181 1.760000e-09 75.0
13 TraesCS1B01G467100 chr3B 84.848 330 46 4 1370 1699 15734034 15734359 3.400000e-86 329.0
14 TraesCS1B01G467100 chr6D 91.525 59 5 0 612 670 340436413 340436355 1.050000e-11 82.4
15 TraesCS1B01G467100 chrUn 86.765 68 8 1 607 674 342231615 342231681 1.760000e-09 75.0
16 TraesCS1B01G467100 chr7B 95.652 46 2 0 625 670 623935399 623935354 1.760000e-09 75.0
17 TraesCS1B01G467100 chr7B 89.655 58 5 1 613 669 44228705 44228762 6.330000e-09 73.1
18 TraesCS1B01G467100 chr4B 93.878 49 3 0 614 662 463588261 463588309 1.760000e-09 75.0
19 TraesCS1B01G467100 chr4B 95.556 45 2 0 625 669 364039544 364039588 6.330000e-09 73.1
20 TraesCS1B01G467100 chr6B 100.000 28 0 0 4356 4383 298364446 298364419 8.000000e-03 52.8
21 TraesCS1B01G467100 chr6A 100.000 28 0 0 4356 4383 224095394 224095421 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G467100 chr1B 677089894 677094451 4557 False 8418.000000 8418 100.000000 1 4558 1 chr1B.!!$F1 4557
1 TraesCS1B01G467100 chr1A 583892214 583895254 3040 False 4327.000000 4327 92.333000 734 3801 1 chr1A.!!$F1 3067
2 TraesCS1B01G467100 chr1A 405871026 405871704 678 True 872.000000 872 90.147000 15 681 1 chr1A.!!$R1 666
3 TraesCS1B01G467100 chr1D 486155260 486158994 3734 False 1583.333333 4069 88.819667 804 4558 3 chr1D.!!$F2 3754
4 TraesCS1B01G467100 chr5A 486063097 486063651 554 False 212.500000 350 84.433000 1064 1712 2 chr5A.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 571 0.035739 GTTGCCCGGTAACAGAGGAA 59.964 55.0 13.07 0.0 0.0 3.36 F
573 587 0.036306 GGAAGAAGAAGCACGGGGAA 59.964 55.0 0.00 0.0 0.0 3.97 F
600 614 0.107848 AAATCGGGCGGTTACAGGAG 60.108 55.0 0.00 0.0 0.0 3.69 F
911 943 0.315251 GAAGCCCAGAACACAAAGGC 59.685 55.0 0.00 0.0 44.2 4.35 F
1891 1975 0.387750 GGTTTAACGCGTCGAGGTCT 60.388 55.0 14.44 0.0 0.0 3.85 F
2418 2507 0.612174 AGAGTAGACTGCAAGCCGGA 60.612 55.0 5.05 0.0 37.6 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1577 0.106918 AAGCAAACCGGGTGAAGACA 60.107 50.0 6.32 0.00 0.0 3.41 R
2053 2140 0.107165 CCCCGGGGATCTTTTCTGAC 60.107 60.0 38.41 0.00 37.5 3.51 R
2066 2153 0.315886 GCTTTTACACAAACCCCGGG 59.684 55.0 15.80 15.80 0.0 5.73 R
2597 2686 0.813184 AGCCTGCATTGTCATTTCCG 59.187 50.0 0.00 0.00 0.0 4.30 R
2940 3029 0.031585 TCCGCGTCTATTGGATTCCG 59.968 55.0 4.92 0.00 0.0 4.30 R
4073 4181 0.317479 ACTTTCTTCTACCGCGCAGT 59.683 50.0 8.75 4.34 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.278661 GCTGCGACCTACTACGGC 60.279 66.667 0.00 0.00 0.00 5.68
63 64 4.686191 TTTTTGTTGCAACCATCCTCAT 57.314 36.364 26.14 0.00 0.00 2.90
78 79 5.639506 CCATCCTCATATTTTGCTACTACCG 59.360 44.000 0.00 0.00 0.00 4.02
81 82 3.386486 TCATATTTTGCTACTACCGGCG 58.614 45.455 0.00 0.00 0.00 6.46
104 105 5.062934 CGAGGAATATTGCTACAACGAACAA 59.937 40.000 9.72 0.00 0.00 2.83
139 140 3.506096 CGACCGACGCTGGAGCTA 61.506 66.667 0.00 0.00 39.32 3.32
147 148 2.415608 CGCTGGAGCTAGAACCGGA 61.416 63.158 9.46 0.00 39.32 5.14
204 208 2.529151 ACAACTTCTGTTTTTGCTGCG 58.471 42.857 0.00 0.00 32.99 5.18
221 225 2.259618 TGCGTCGACTAGAGCAATTTC 58.740 47.619 14.70 0.00 36.60 2.17
281 285 1.873486 GCAACCGCAAAAGCTTCCATT 60.873 47.619 0.00 0.00 38.36 3.16
323 329 0.179051 GAGCTGCATCCAAGAGAGGG 60.179 60.000 1.02 0.00 0.00 4.30
328 334 1.704007 GCATCCAAGAGAGGGGGAGG 61.704 65.000 0.00 0.00 35.68 4.30
335 341 0.772124 AGAGAGGGGGAGGTTGCAAA 60.772 55.000 0.00 0.00 0.00 3.68
337 343 0.772124 AGAGGGGGAGGTTGCAAAGA 60.772 55.000 0.00 0.00 0.00 2.52
338 344 0.112412 GAGGGGGAGGTTGCAAAGAA 59.888 55.000 0.00 0.00 0.00 2.52
339 345 0.113190 AGGGGGAGGTTGCAAAGAAG 59.887 55.000 0.00 0.00 0.00 2.85
384 390 3.583276 CTACGCCGGTGAGGTTGCA 62.583 63.158 24.59 0.00 43.70 4.08
394 400 3.310774 CGGTGAGGTTGCAATCTATCAAG 59.689 47.826 13.36 2.15 0.00 3.02
396 402 3.065925 GTGAGGTTGCAATCTATCAAGGC 59.934 47.826 13.36 0.00 0.00 4.35
403 409 1.062488 AATCTATCAAGGCGGGGGCT 61.062 55.000 0.00 0.00 41.24 5.19
454 460 1.363807 GGCAACCAACTGTGCTTCC 59.636 57.895 0.00 0.00 0.00 3.46
464 470 1.078918 TGTGCTTCCAGATCTGCGG 60.079 57.895 17.76 4.88 0.00 5.69
494 508 2.743928 GCTTGGTGCGAGGTGAGG 60.744 66.667 0.00 0.00 0.00 3.86
495 509 2.046892 CTTGGTGCGAGGTGAGGG 60.047 66.667 0.00 0.00 0.00 4.30
496 510 3.612247 CTTGGTGCGAGGTGAGGGG 62.612 68.421 0.00 0.00 0.00 4.79
499 513 3.775654 GTGCGAGGTGAGGGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
502 516 2.765807 CGAGGTGAGGGGGAGCAT 60.766 66.667 0.00 0.00 0.00 3.79
503 517 2.914289 GAGGTGAGGGGGAGCATG 59.086 66.667 0.00 0.00 0.00 4.06
504 518 2.693864 AGGTGAGGGGGAGCATGG 60.694 66.667 0.00 0.00 0.00 3.66
505 519 3.813724 GGTGAGGGGGAGCATGGG 61.814 72.222 0.00 0.00 0.00 4.00
506 520 4.512914 GTGAGGGGGAGCATGGGC 62.513 72.222 0.00 0.00 41.61 5.36
514 528 4.212913 GAGCATGGGCGAGCTCGA 62.213 66.667 38.74 19.49 46.53 4.04
515 529 3.512223 GAGCATGGGCGAGCTCGAT 62.512 63.158 38.74 20.94 46.53 3.59
516 530 3.344215 GCATGGGCGAGCTCGATG 61.344 66.667 38.74 30.47 43.02 3.84
517 531 3.344215 CATGGGCGAGCTCGATGC 61.344 66.667 38.74 21.16 43.02 3.91
527 541 3.531207 CTCGATGCGGCTGGGAGA 61.531 66.667 0.00 0.00 0.00 3.71
528 542 3.496875 CTCGATGCGGCTGGGAGAG 62.497 68.421 0.00 0.00 0.00 3.20
529 543 3.842923 CGATGCGGCTGGGAGAGT 61.843 66.667 0.00 0.00 0.00 3.24
530 544 2.202987 GATGCGGCTGGGAGAGTG 60.203 66.667 0.00 0.00 0.00 3.51
531 545 4.479993 ATGCGGCTGGGAGAGTGC 62.480 66.667 0.00 0.00 0.00 4.40
537 551 4.463879 CTGGGAGAGTGCGCAGGG 62.464 72.222 12.22 0.00 42.96 4.45
540 554 4.021925 GGAGAGTGCGCAGGGGTT 62.022 66.667 12.22 0.00 0.00 4.11
541 555 2.743928 GAGAGTGCGCAGGGGTTG 60.744 66.667 12.22 0.00 0.00 3.77
549 563 4.354162 GCAGGGGTTGCCCGGTAA 62.354 66.667 0.00 0.00 46.66 2.85
550 564 2.360726 CAGGGGTTGCCCGGTAAC 60.361 66.667 9.78 9.78 46.66 2.50
551 565 2.855014 AGGGGTTGCCCGGTAACA 60.855 61.111 18.76 3.39 46.66 2.41
552 566 2.360726 GGGGTTGCCCGGTAACAG 60.361 66.667 18.76 0.00 46.66 3.16
553 567 2.751688 GGGTTGCCCGGTAACAGA 59.248 61.111 18.76 0.00 32.13 3.41
554 568 1.376812 GGGTTGCCCGGTAACAGAG 60.377 63.158 18.76 0.00 32.13 3.35
555 569 1.376812 GGTTGCCCGGTAACAGAGG 60.377 63.158 18.76 0.00 30.00 3.69
556 570 1.675219 GTTGCCCGGTAACAGAGGA 59.325 57.895 13.07 0.00 0.00 3.71
557 571 0.035739 GTTGCCCGGTAACAGAGGAA 59.964 55.000 13.07 0.00 0.00 3.36
558 572 0.323629 TTGCCCGGTAACAGAGGAAG 59.676 55.000 0.00 0.00 0.00 3.46
559 573 0.543410 TGCCCGGTAACAGAGGAAGA 60.543 55.000 0.00 0.00 0.00 2.87
560 574 0.611714 GCCCGGTAACAGAGGAAGAA 59.388 55.000 0.00 0.00 0.00 2.52
561 575 1.405661 GCCCGGTAACAGAGGAAGAAG 60.406 57.143 0.00 0.00 0.00 2.85
562 576 2.176889 CCCGGTAACAGAGGAAGAAGA 58.823 52.381 0.00 0.00 0.00 2.87
563 577 2.565834 CCCGGTAACAGAGGAAGAAGAA 59.434 50.000 0.00 0.00 0.00 2.52
564 578 3.368531 CCCGGTAACAGAGGAAGAAGAAG 60.369 52.174 0.00 0.00 0.00 2.85
565 579 3.254892 CGGTAACAGAGGAAGAAGAAGC 58.745 50.000 0.00 0.00 0.00 3.86
566 580 3.306088 CGGTAACAGAGGAAGAAGAAGCA 60.306 47.826 0.00 0.00 0.00 3.91
567 581 3.997681 GGTAACAGAGGAAGAAGAAGCAC 59.002 47.826 0.00 0.00 0.00 4.40
568 582 2.447244 ACAGAGGAAGAAGAAGCACG 57.553 50.000 0.00 0.00 0.00 5.34
569 583 1.001406 ACAGAGGAAGAAGAAGCACGG 59.999 52.381 0.00 0.00 0.00 4.94
570 584 0.610687 AGAGGAAGAAGAAGCACGGG 59.389 55.000 0.00 0.00 0.00 5.28
571 585 0.391793 GAGGAAGAAGAAGCACGGGG 60.392 60.000 0.00 0.00 0.00 5.73
572 586 0.836400 AGGAAGAAGAAGCACGGGGA 60.836 55.000 0.00 0.00 0.00 4.81
573 587 0.036306 GGAAGAAGAAGCACGGGGAA 59.964 55.000 0.00 0.00 0.00 3.97
574 588 1.340114 GGAAGAAGAAGCACGGGGAAT 60.340 52.381 0.00 0.00 0.00 3.01
575 589 1.740025 GAAGAAGAAGCACGGGGAATG 59.260 52.381 0.00 0.00 0.00 2.67
576 590 0.984230 AGAAGAAGCACGGGGAATGA 59.016 50.000 0.00 0.00 0.00 2.57
577 591 1.065854 AGAAGAAGCACGGGGAATGAG 60.066 52.381 0.00 0.00 0.00 2.90
578 592 0.984230 AAGAAGCACGGGGAATGAGA 59.016 50.000 0.00 0.00 0.00 3.27
579 593 1.207791 AGAAGCACGGGGAATGAGAT 58.792 50.000 0.00 0.00 0.00 2.75
580 594 1.134280 AGAAGCACGGGGAATGAGATG 60.134 52.381 0.00 0.00 0.00 2.90
581 595 0.911769 AAGCACGGGGAATGAGATGA 59.088 50.000 0.00 0.00 0.00 2.92
582 596 0.911769 AGCACGGGGAATGAGATGAA 59.088 50.000 0.00 0.00 0.00 2.57
583 597 1.281867 AGCACGGGGAATGAGATGAAA 59.718 47.619 0.00 0.00 0.00 2.69
584 598 2.092212 AGCACGGGGAATGAGATGAAAT 60.092 45.455 0.00 0.00 0.00 2.17
585 599 2.291741 GCACGGGGAATGAGATGAAATC 59.708 50.000 0.00 0.00 46.04 2.17
596 610 1.658994 GATGAAATCGGGCGGTTACA 58.341 50.000 0.00 0.00 31.13 2.41
597 611 1.597663 GATGAAATCGGGCGGTTACAG 59.402 52.381 0.00 0.00 31.13 2.74
598 612 0.391927 TGAAATCGGGCGGTTACAGG 60.392 55.000 0.00 0.00 0.00 4.00
599 613 0.108041 GAAATCGGGCGGTTACAGGA 60.108 55.000 0.00 0.00 0.00 3.86
600 614 0.107848 AAATCGGGCGGTTACAGGAG 60.108 55.000 0.00 0.00 0.00 3.69
601 615 1.262640 AATCGGGCGGTTACAGGAGT 61.263 55.000 0.00 0.00 0.00 3.85
602 616 1.673808 ATCGGGCGGTTACAGGAGTC 61.674 60.000 0.00 0.00 0.00 3.36
603 617 2.582978 GGGCGGTTACAGGAGTCC 59.417 66.667 0.00 0.00 0.00 3.85
604 618 1.988406 GGGCGGTTACAGGAGTCCT 60.988 63.158 5.62 5.62 0.00 3.85
605 619 0.685458 GGGCGGTTACAGGAGTCCTA 60.685 60.000 12.53 0.00 29.64 2.94
606 620 1.188863 GGCGGTTACAGGAGTCCTAA 58.811 55.000 12.53 0.00 29.64 2.69
607 621 1.761198 GGCGGTTACAGGAGTCCTAAT 59.239 52.381 12.53 5.83 29.64 1.73
608 622 2.169978 GGCGGTTACAGGAGTCCTAATT 59.830 50.000 12.53 1.65 29.64 1.40
609 623 3.195661 GCGGTTACAGGAGTCCTAATTG 58.804 50.000 12.53 2.60 29.64 2.32
610 624 3.793559 CGGTTACAGGAGTCCTAATTGG 58.206 50.000 12.53 1.08 29.64 3.16
611 625 3.449737 CGGTTACAGGAGTCCTAATTGGA 59.550 47.826 12.53 0.00 43.86 3.53
620 634 2.464796 TCCTAATTGGACGGCTAGGA 57.535 50.000 0.00 0.00 40.56 2.94
621 635 2.037144 TCCTAATTGGACGGCTAGGAC 58.963 52.381 0.00 0.00 40.56 3.85
622 636 1.269621 CCTAATTGGACGGCTAGGACG 60.270 57.143 0.00 0.00 41.40 4.79
629 643 4.189188 CGGCTAGGACGTGACCGG 62.189 72.222 0.00 0.00 40.18 5.28
630 644 4.509737 GGCTAGGACGTGACCGGC 62.510 72.222 0.00 0.00 43.14 6.13
636 650 3.047877 GACGTGACCGGCCCAAAG 61.048 66.667 0.00 0.42 35.50 2.77
637 651 3.819877 GACGTGACCGGCCCAAAGT 62.820 63.158 0.00 3.92 35.50 2.66
638 652 2.593436 CGTGACCGGCCCAAAGTT 60.593 61.111 0.00 0.00 0.00 2.66
639 653 2.190841 CGTGACCGGCCCAAAGTTT 61.191 57.895 0.00 0.00 0.00 2.66
640 654 1.362355 GTGACCGGCCCAAAGTTTG 59.638 57.895 8.73 8.73 0.00 2.93
665 679 2.355956 GCACCGGCGCCTATAGTC 60.356 66.667 26.68 4.65 0.00 2.59
666 680 2.338984 CACCGGCGCCTATAGTCC 59.661 66.667 26.68 0.00 0.00 3.85
667 681 2.916181 ACCGGCGCCTATAGTCCC 60.916 66.667 26.68 0.00 0.00 4.46
668 682 3.692406 CCGGCGCCTATAGTCCCC 61.692 72.222 26.68 0.00 0.00 4.81
669 683 3.692406 CGGCGCCTATAGTCCCCC 61.692 72.222 26.68 0.00 0.00 5.40
670 684 2.525877 GGCGCCTATAGTCCCCCA 60.526 66.667 22.15 0.00 0.00 4.96
671 685 1.918800 GGCGCCTATAGTCCCCCAT 60.919 63.158 22.15 0.00 0.00 4.00
672 686 1.489560 GGCGCCTATAGTCCCCCATT 61.490 60.000 22.15 0.00 0.00 3.16
673 687 0.400594 GCGCCTATAGTCCCCCATTT 59.599 55.000 0.00 0.00 0.00 2.32
674 688 1.202891 GCGCCTATAGTCCCCCATTTT 60.203 52.381 0.00 0.00 0.00 1.82
675 689 2.039348 GCGCCTATAGTCCCCCATTTTA 59.961 50.000 0.00 0.00 0.00 1.52
676 690 3.308188 GCGCCTATAGTCCCCCATTTTAT 60.308 47.826 0.00 0.00 0.00 1.40
677 691 4.809691 GCGCCTATAGTCCCCCATTTTATT 60.810 45.833 0.00 0.00 0.00 1.40
678 692 5.321927 CGCCTATAGTCCCCCATTTTATTT 58.678 41.667 0.00 0.00 0.00 1.40
679 693 5.773176 CGCCTATAGTCCCCCATTTTATTTT 59.227 40.000 0.00 0.00 0.00 1.82
680 694 6.294508 CGCCTATAGTCCCCCATTTTATTTTG 60.295 42.308 0.00 0.00 0.00 2.44
681 695 6.518369 GCCTATAGTCCCCCATTTTATTTTGC 60.518 42.308 0.00 0.00 0.00 3.68
682 696 6.782494 CCTATAGTCCCCCATTTTATTTTGCT 59.218 38.462 0.00 0.00 0.00 3.91
683 697 4.824479 AGTCCCCCATTTTATTTTGCTG 57.176 40.909 0.00 0.00 0.00 4.41
684 698 3.055167 AGTCCCCCATTTTATTTTGCTGC 60.055 43.478 0.00 0.00 0.00 5.25
685 699 2.909006 TCCCCCATTTTATTTTGCTGCA 59.091 40.909 0.00 0.00 0.00 4.41
686 700 3.522750 TCCCCCATTTTATTTTGCTGCAT 59.477 39.130 1.84 0.00 0.00 3.96
687 701 4.018597 TCCCCCATTTTATTTTGCTGCATT 60.019 37.500 1.84 0.00 0.00 3.56
688 702 4.705991 CCCCCATTTTATTTTGCTGCATTT 59.294 37.500 1.84 0.00 0.00 2.32
689 703 5.884792 CCCCCATTTTATTTTGCTGCATTTA 59.115 36.000 1.84 0.00 0.00 1.40
690 704 6.376581 CCCCCATTTTATTTTGCTGCATTTAA 59.623 34.615 1.84 0.00 0.00 1.52
691 705 7.094032 CCCCCATTTTATTTTGCTGCATTTAAA 60.094 33.333 1.84 1.31 0.00 1.52
692 706 7.754475 CCCCATTTTATTTTGCTGCATTTAAAC 59.246 33.333 1.84 0.00 0.00 2.01
693 707 7.754475 CCCATTTTATTTTGCTGCATTTAAACC 59.246 33.333 1.84 0.00 0.00 3.27
694 708 8.513774 CCATTTTATTTTGCTGCATTTAAACCT 58.486 29.630 1.84 0.00 0.00 3.50
695 709 9.896263 CATTTTATTTTGCTGCATTTAAACCTT 57.104 25.926 1.84 0.00 0.00 3.50
700 714 8.620116 ATTTTGCTGCATTTAAACCTTATTGT 57.380 26.923 1.84 0.00 0.00 2.71
701 715 8.443953 TTTTGCTGCATTTAAACCTTATTGTT 57.556 26.923 1.84 0.00 0.00 2.83
702 716 8.443953 TTTGCTGCATTTAAACCTTATTGTTT 57.556 26.923 1.84 0.00 41.18 2.83
703 717 7.418840 TGCTGCATTTAAACCTTATTGTTTG 57.581 32.000 0.00 0.00 38.79 2.93
704 718 7.212976 TGCTGCATTTAAACCTTATTGTTTGA 58.787 30.769 0.00 0.00 38.79 2.69
705 719 7.170658 TGCTGCATTTAAACCTTATTGTTTGAC 59.829 33.333 0.00 0.00 38.79 3.18
706 720 7.360017 GCTGCATTTAAACCTTATTGTTTGACC 60.360 37.037 0.00 0.00 38.79 4.02
707 721 7.500992 TGCATTTAAACCTTATTGTTTGACCA 58.499 30.769 0.00 0.00 38.79 4.02
708 722 8.153550 TGCATTTAAACCTTATTGTTTGACCAT 58.846 29.630 0.00 0.00 38.79 3.55
709 723 8.442384 GCATTTAAACCTTATTGTTTGACCATG 58.558 33.333 0.00 0.00 38.79 3.66
710 724 9.703892 CATTTAAACCTTATTGTTTGACCATGA 57.296 29.630 0.00 0.00 38.79 3.07
712 726 9.703892 TTTAAACCTTATTGTTTGACCATGATG 57.296 29.630 0.00 0.00 38.79 3.07
713 727 5.920193 ACCTTATTGTTTGACCATGATGG 57.080 39.130 10.53 10.53 45.02 3.51
714 728 6.269769 AAACCTTATTGTTTGACCATGATGGT 59.730 34.615 18.61 18.61 41.23 3.55
715 729 7.740567 AAACCTTATTGTTTGACCATGATGGTG 60.741 37.037 23.89 5.22 42.07 4.17
728 742 6.653526 CCATGATGGTGGCTTTATTTATGA 57.346 37.500 2.54 0.00 31.35 2.15
729 743 7.053316 CCATGATGGTGGCTTTATTTATGAA 57.947 36.000 2.54 0.00 31.35 2.57
730 744 7.149973 CCATGATGGTGGCTTTATTTATGAAG 58.850 38.462 2.54 0.00 31.35 3.02
731 745 6.147864 TGATGGTGGCTTTATTTATGAAGC 57.852 37.500 9.92 9.92 45.42 3.86
732 746 4.630894 TGGTGGCTTTATTTATGAAGCG 57.369 40.909 11.57 0.00 46.62 4.68
784 798 2.529632 TCTGAGGCTAAGCTCTTGTCA 58.470 47.619 0.00 0.00 0.00 3.58
895 927 2.125350 GTCCGCTCCAGCCAGAAG 60.125 66.667 0.00 0.00 37.91 2.85
899 931 4.039092 GCTCCAGCCAGAAGCCCA 62.039 66.667 0.00 0.00 45.47 5.36
901 933 2.203983 TCCAGCCAGAAGCCCAGA 60.204 61.111 0.00 0.00 45.47 3.86
911 943 0.315251 GAAGCCCAGAACACAAAGGC 59.685 55.000 0.00 0.00 44.20 4.35
1062 1114 4.783841 CCGTCGTCGTCGTCGTCC 62.784 72.222 17.80 3.60 44.09 4.79
1077 1129 1.641552 CGTCCTCCTCCTCCTCCTCT 61.642 65.000 0.00 0.00 0.00 3.69
1117 1169 4.938756 TCCCCAAGCACCCCCACT 62.939 66.667 0.00 0.00 0.00 4.00
1146 1204 1.446966 GCGCTCCAGTCTCTTGACC 60.447 63.158 0.00 0.00 43.91 4.02
1236 1294 1.069049 ACAAGGTGCTGTGATTTTGCC 59.931 47.619 0.00 0.00 0.00 4.52
1257 1315 6.039616 TGCCAACAGAACAGAAAAATGTTAC 58.960 36.000 0.00 0.00 43.32 2.50
1258 1316 6.127479 TGCCAACAGAACAGAAAAATGTTACT 60.127 34.615 0.00 0.00 43.32 2.24
1259 1317 6.198966 GCCAACAGAACAGAAAAATGTTACTG 59.801 38.462 12.95 12.95 43.32 2.74
1260 1318 7.257722 CCAACAGAACAGAAAAATGTTACTGT 58.742 34.615 13.78 13.78 44.30 3.55
1261 1319 8.402472 CCAACAGAACAGAAAAATGTTACTGTA 58.598 33.333 17.10 0.00 43.15 2.74
1262 1320 9.438291 CAACAGAACAGAAAAATGTTACTGTAG 57.562 33.333 17.10 0.00 43.15 2.74
1263 1321 8.732746 ACAGAACAGAAAAATGTTACTGTAGT 57.267 30.769 16.10 0.00 43.32 2.73
1269 1327 9.609346 ACAGAAAAATGTTACTGTAGTGTAGTT 57.391 29.630 0.00 0.00 40.96 2.24
1278 1336 7.501559 TGTTACTGTAGTGTAGTTCAGACTTCT 59.498 37.037 0.00 0.00 37.33 2.85
1322 1387 5.812127 CGGTTGATGATTGTCTGAATGACTA 59.188 40.000 0.00 0.00 45.54 2.59
1325 1390 6.856135 TGATGATTGTCTGAATGACTATGC 57.144 37.500 0.00 0.00 45.54 3.14
1329 1394 5.529800 TGATTGTCTGAATGACTATGCATGG 59.470 40.000 10.16 9.41 45.54 3.66
1344 1409 1.093972 CATGGCTGCGTGTTTGGATA 58.906 50.000 0.00 0.00 0.00 2.59
1351 1420 2.675844 CTGCGTGTTTGGATAATTCGGA 59.324 45.455 0.00 0.00 0.00 4.55
1353 1422 3.502595 TGCGTGTTTGGATAATTCGGAAA 59.497 39.130 0.00 0.00 0.00 3.13
1358 1427 4.157656 TGTTTGGATAATTCGGAAAGCCAG 59.842 41.667 0.00 0.00 0.00 4.85
1365 1434 1.305201 TTCGGAAAGCCAGACACAAC 58.695 50.000 0.00 0.00 0.00 3.32
1366 1435 0.534203 TCGGAAAGCCAGACACAACC 60.534 55.000 0.00 0.00 0.00 3.77
1368 1437 1.692411 GGAAAGCCAGACACAACCTT 58.308 50.000 0.00 0.00 0.00 3.50
1374 1443 5.453567 AAGCCAGACACAACCTTAATTTC 57.546 39.130 0.00 0.00 0.00 2.17
1375 1444 4.729868 AGCCAGACACAACCTTAATTTCT 58.270 39.130 0.00 0.00 0.00 2.52
1376 1445 4.520492 AGCCAGACACAACCTTAATTTCTG 59.480 41.667 0.00 0.00 0.00 3.02
1379 1448 5.530915 CCAGACACAACCTTAATTTCTGTGA 59.469 40.000 7.45 0.00 39.80 3.58
1387 1456 7.502226 ACAACCTTAATTTCTGTGATTCTGTGA 59.498 33.333 0.00 0.00 0.00 3.58
1399 1468 2.118313 TTCTGTGATGGATGCAGTGG 57.882 50.000 0.00 0.00 0.00 4.00
1401 1470 1.378911 TGTGATGGATGCAGTGGGC 60.379 57.895 0.00 0.00 45.13 5.36
1437 1506 3.197549 GCTCTGAATCCCTGAGAGTTCTT 59.802 47.826 0.00 0.00 41.68 2.52
1496 1565 4.778143 GCGCCGGGGTGAGATTGT 62.778 66.667 20.83 0.00 0.00 2.71
1498 1567 2.511600 GCCGGGGTGAGATTGTCG 60.512 66.667 2.18 0.00 0.00 4.35
1508 1577 1.344438 TGAGATTGTCGGAACTGCTGT 59.656 47.619 0.00 0.00 0.00 4.40
1509 1578 1.728971 GAGATTGTCGGAACTGCTGTG 59.271 52.381 0.00 0.00 0.00 3.66
1516 1585 0.861837 CGGAACTGCTGTGTCTTCAC 59.138 55.000 0.00 0.00 44.08 3.18
1562 1631 0.541296 AAGGCAAGCAGCTCACCAAT 60.541 50.000 14.57 2.26 44.79 3.16
1594 1663 4.023792 TGCACACTCTGAATTCAATCACAC 60.024 41.667 9.88 0.00 0.00 3.82
1597 1666 6.675026 CACACTCTGAATTCAATCACACATT 58.325 36.000 9.88 0.00 0.00 2.71
1706 1775 1.592064 TGACAGAAATGCGCAGTTCA 58.408 45.000 40.92 25.60 37.82 3.18
1715 1799 0.587768 TGCGCAGTTCAACATGTCTG 59.412 50.000 5.66 3.11 0.00 3.51
1729 1813 3.200605 ACATGTCTGCTTGGATGGATGTA 59.799 43.478 0.00 0.00 0.00 2.29
1730 1814 4.141321 ACATGTCTGCTTGGATGGATGTAT 60.141 41.667 0.00 0.00 0.00 2.29
1732 1816 3.062763 GTCTGCTTGGATGGATGTATCG 58.937 50.000 0.00 0.00 0.00 2.92
1765 1849 8.591072 AGTAGCAACAGTTTGGAGTATAACTTA 58.409 33.333 0.00 0.00 32.50 2.24
1825 1909 1.615392 GCTCAAGATTTGGTGGTGCTT 59.385 47.619 0.00 0.00 0.00 3.91
1891 1975 0.387750 GGTTTAACGCGTCGAGGTCT 60.388 55.000 14.44 0.00 0.00 3.85
1922 2006 6.374053 CACCATAACACATACCTCACATGAAA 59.626 38.462 0.00 0.00 0.00 2.69
1936 2020 5.904941 TCACATGAAACAGATTTTGCACTT 58.095 33.333 0.00 0.00 0.00 3.16
1951 2035 3.620488 TGCACTTCCTTGGAATGATACC 58.380 45.455 2.24 0.00 0.00 2.73
1952 2036 3.010027 TGCACTTCCTTGGAATGATACCA 59.990 43.478 2.24 0.00 35.47 3.25
1958 2042 6.953520 ACTTCCTTGGAATGATACCAAATTCA 59.046 34.615 2.24 0.00 45.05 2.57
1964 2048 5.123227 GGAATGATACCAAATTCACTCCGA 58.877 41.667 0.00 0.00 35.00 4.55
1966 2050 6.934645 GGAATGATACCAAATTCACTCCGATA 59.065 38.462 0.00 0.00 35.00 2.92
1978 2062 2.546368 CACTCCGATAACTCCTCTCGAG 59.454 54.545 5.93 5.93 44.95 4.04
2053 2140 5.415221 AGGAAACTGAAGAGAATTAGAGCG 58.585 41.667 0.00 0.00 41.13 5.03
2066 2153 6.045955 AGAATTAGAGCGTCAGAAAAGATCC 58.954 40.000 0.00 0.00 0.00 3.36
2138 2225 8.202137 GCAGGTCCACTAGTAGTCAATTTATAA 58.798 37.037 0.00 0.00 0.00 0.98
2194 2281 1.171308 TAGTTCGGGAACAGTCGGAG 58.829 55.000 13.52 0.00 43.47 4.63
2240 2329 4.070716 CCCCTCATCAGTATTCTCATTGC 58.929 47.826 0.00 0.00 0.00 3.56
2393 2482 1.986575 GCTGGAGTTGATGAAGCGGC 61.987 60.000 0.00 0.00 0.00 6.53
2415 2504 2.615869 CTGAAGAGTAGACTGCAAGCC 58.384 52.381 0.00 0.00 37.60 4.35
2418 2507 0.612174 AGAGTAGACTGCAAGCCGGA 60.612 55.000 5.05 0.00 37.60 5.14
2466 2555 2.701587 CACCGAGTGGCTTGTCAAA 58.298 52.632 0.00 0.00 39.70 2.69
2538 2627 4.261801 TCCAGGTTGCAAGCTTATACTTC 58.738 43.478 27.77 0.00 33.87 3.01
2597 2686 1.268625 CCTTTTGTAACCGGCCTTGTC 59.731 52.381 0.00 0.00 0.00 3.18
2660 2749 1.153939 CTGAGAGGTTCGACAGCCG 60.154 63.158 0.00 0.00 40.25 5.52
2768 2857 0.811616 CTGCCCGTATGCCTCTGAAC 60.812 60.000 0.00 0.00 0.00 3.18
2775 2864 2.359900 GTATGCCTCTGAACCCAACAG 58.640 52.381 0.00 0.00 36.80 3.16
3092 3181 1.490910 GTGGTATTGCCCTCTAGCCTT 59.509 52.381 0.00 0.00 36.04 4.35
3097 3187 1.198713 TTGCCCTCTAGCCTTCTCTG 58.801 55.000 0.00 0.00 0.00 3.35
3165 3273 7.601856 TGAATCCATGGAAATGTACAAACTTC 58.398 34.615 20.67 13.29 0.00 3.01
3191 3299 6.903534 TCAGATAAGAGAATAACAACTCCCCT 59.096 38.462 0.00 0.00 34.13 4.79
3238 3346 8.547967 AGTTCATACAGTACGTCAATTTGAAT 57.452 30.769 0.00 0.00 0.00 2.57
3240 3348 8.440059 GTTCATACAGTACGTCAATTTGAATGA 58.560 33.333 0.00 1.83 0.00 2.57
3262 3370 3.190874 CGAATAAGTCTGTCTGAAGGGC 58.809 50.000 0.00 0.00 0.00 5.19
3305 3413 3.118956 CCCCAGACACATCACTAGAAGAC 60.119 52.174 0.00 0.00 0.00 3.01
3347 3455 2.668120 GCAGCTGAGGGAGAGGCTT 61.668 63.158 20.43 0.00 32.30 4.35
3470 3578 1.707106 TCTACCACGTGTCCAAGGAA 58.293 50.000 15.65 0.00 0.00 3.36
3497 3605 3.259374 TCAGGAAGATCGAAAAGTCAGCT 59.741 43.478 0.00 0.00 0.00 4.24
3502 3610 5.582665 GGAAGATCGAAAAGTCAGCTATGTT 59.417 40.000 0.00 0.00 0.00 2.71
3638 3746 6.404074 GGCCTAATTTTCACTGAGATTGTGAG 60.404 42.308 0.00 0.00 43.98 3.51
3724 3832 2.106511 GGTGGCTGATGGGTACATGTAT 59.893 50.000 9.18 0.00 37.47 2.29
3835 3943 4.591072 AGATATTAACTCCAGTCTCAGGGC 59.409 45.833 0.00 0.00 0.00 5.19
3852 3960 0.849417 GGCCTGGATCAAGGATTCCT 59.151 55.000 21.32 0.00 40.02 3.36
3928 4036 1.490490 ACAAAGACCACTGAGCTTCCA 59.510 47.619 0.00 0.00 0.00 3.53
3942 4050 2.910319 AGCTTCCACCTACACCACATAA 59.090 45.455 0.00 0.00 0.00 1.90
3945 4053 4.705023 GCTTCCACCTACACCACATAATTT 59.295 41.667 0.00 0.00 0.00 1.82
4039 4147 3.062639 CCCCAGTTAACGGACCGT 58.937 61.111 15.37 15.37 43.97 4.83
4073 4181 1.437986 CCCGAAAACAACCCGCAAA 59.562 52.632 0.00 0.00 0.00 3.68
4091 4199 1.429463 AACTGCGCGGTAGAAGAAAG 58.571 50.000 24.63 1.86 0.00 2.62
4100 4208 3.437049 GCGGTAGAAGAAAGTCAGCAAAT 59.563 43.478 0.00 0.00 0.00 2.32
4131 4239 6.033091 GGTGTGTGTTTTCTTTGTTTTACTCG 59.967 38.462 0.00 0.00 0.00 4.18
4296 4439 6.830114 AAAAATGTACGCGGAATTGAAAAA 57.170 29.167 12.47 0.00 0.00 1.94
4304 4447 5.525199 ACGCGGAATTGAAAAATAGTTTGT 58.475 33.333 12.47 0.00 0.00 2.83
4364 4507 9.490379 GGTTCTCGGATATAAATAACTGTTCAT 57.510 33.333 0.00 0.00 0.00 2.57
4383 4526 8.152309 TGTTCATGAATTTGAAAAATGTTCCC 57.848 30.769 12.12 0.00 37.36 3.97
4384 4527 7.772292 TGTTCATGAATTTGAAAAATGTTCCCA 59.228 29.630 12.12 0.00 37.36 4.37
4400 4543 1.962807 TCCCAGGCTTCAAACAATGTG 59.037 47.619 0.00 0.00 0.00 3.21
4430 4573 9.612066 AATTTCAAACAATGTCCATGTAAAAGT 57.388 25.926 0.00 0.00 0.00 2.66
4546 4689 7.967890 AACAATGAATTCAGAAAATGTTCCC 57.032 32.000 14.54 0.00 33.92 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.883084 GGTCGCAGCTCCGTAATGG 60.883 63.158 0.00 0.00 40.09 3.16
8 9 0.384309 TAGGTCGCAGCTCCGTAATG 59.616 55.000 0.00 0.00 0.00 1.90
9 10 0.384669 GTAGGTCGCAGCTCCGTAAT 59.615 55.000 0.00 0.00 0.00 1.89
10 11 0.679002 AGTAGGTCGCAGCTCCGTAA 60.679 55.000 0.00 0.00 0.00 3.18
11 12 0.178767 TAGTAGGTCGCAGCTCCGTA 59.821 55.000 0.00 0.00 0.00 4.02
12 13 1.077930 TAGTAGGTCGCAGCTCCGT 60.078 57.895 0.00 0.00 0.00 4.69
13 14 1.355916 GTAGTAGGTCGCAGCTCCG 59.644 63.158 0.00 0.00 0.00 4.63
14 15 1.355916 CGTAGTAGGTCGCAGCTCC 59.644 63.158 0.00 0.00 0.00 4.70
15 16 1.355916 CCGTAGTAGGTCGCAGCTC 59.644 63.158 0.00 0.00 0.00 4.09
16 17 2.772691 GCCGTAGTAGGTCGCAGCT 61.773 63.158 0.00 0.00 0.00 4.24
17 18 2.278661 GCCGTAGTAGGTCGCAGC 60.279 66.667 0.00 0.00 0.00 5.25
18 19 1.064296 CAGCCGTAGTAGGTCGCAG 59.936 63.158 0.00 0.00 0.00 5.18
19 20 1.676635 ACAGCCGTAGTAGGTCGCA 60.677 57.895 0.00 0.00 0.00 5.10
20 21 1.226603 CACAGCCGTAGTAGGTCGC 60.227 63.158 0.00 0.00 0.00 5.19
62 63 3.554337 CCTCGCCGGTAGTAGCAAAATAT 60.554 47.826 1.90 0.00 0.00 1.28
63 64 2.223876 CCTCGCCGGTAGTAGCAAAATA 60.224 50.000 1.90 0.00 0.00 1.40
78 79 2.221055 CGTTGTAGCAATATTCCTCGCC 59.779 50.000 0.00 0.00 0.00 5.54
81 82 6.417191 TTGTTCGTTGTAGCAATATTCCTC 57.583 37.500 0.00 0.00 0.00 3.71
131 132 1.407258 CTCTTCCGGTTCTAGCTCCAG 59.593 57.143 0.00 0.00 0.00 3.86
132 133 1.272536 ACTCTTCCGGTTCTAGCTCCA 60.273 52.381 0.00 0.00 0.00 3.86
139 140 2.640316 AGCAAAACTCTTCCGGTTCT 57.360 45.000 0.00 0.00 0.00 3.01
147 148 3.537580 TCACGGTTGTAGCAAAACTCTT 58.462 40.909 0.00 0.00 0.00 2.85
200 204 1.914634 AATTGCTCTAGTCGACGCAG 58.085 50.000 10.46 11.64 33.48 5.18
233 237 1.140804 CAAAATAAAGGCCCCGGCG 59.859 57.895 0.00 0.00 43.06 6.46
239 243 2.478514 CGGTTGCAACAAAATAAAGGCC 59.521 45.455 29.55 7.99 0.00 5.19
300 304 0.183014 CTCTTGGATGCAGCTCCCAT 59.817 55.000 0.22 0.00 34.12 4.00
323 329 1.248486 GTCCTTCTTTGCAACCTCCC 58.752 55.000 0.00 0.00 0.00 4.30
328 334 1.266718 TCATGCGTCCTTCTTTGCAAC 59.733 47.619 0.00 0.00 41.22 4.17
335 341 1.079819 CACGGTCATGCGTCCTTCT 60.080 57.895 0.00 0.00 0.00 2.85
337 343 1.070786 AACACGGTCATGCGTCCTT 59.929 52.632 0.00 0.00 0.00 3.36
338 344 1.667830 CAACACGGTCATGCGTCCT 60.668 57.895 0.00 0.00 0.00 3.85
339 345 2.860293 CAACACGGTCATGCGTCC 59.140 61.111 0.00 0.00 0.00 4.79
368 374 3.842925 ATTGCAACCTCACCGGCGT 62.843 57.895 0.00 0.00 35.61 5.68
372 378 2.905075 TGATAGATTGCAACCTCACCG 58.095 47.619 0.00 0.00 0.00 4.94
373 379 3.629398 CCTTGATAGATTGCAACCTCACC 59.371 47.826 0.00 0.00 0.00 4.02
384 390 1.062488 AGCCCCCGCCTTGATAGATT 61.062 55.000 0.00 0.00 34.57 2.40
431 437 2.124320 ACAGTTGGTTGCCGCACT 60.124 55.556 0.00 0.00 0.00 4.40
454 460 4.457496 ACGCACCCCGCAGATCTG 62.457 66.667 18.84 18.84 42.60 2.90
464 470 3.414700 CAAGCTCGTCACGCACCC 61.415 66.667 0.00 0.00 0.00 4.61
471 485 2.049156 CTCGCACCAAGCTCGTCA 60.049 61.111 0.00 0.00 42.61 4.35
487 501 2.693864 CCATGCTCCCCCTCACCT 60.694 66.667 0.00 0.00 0.00 4.00
489 503 4.512914 GCCCATGCTCCCCCTCAC 62.513 72.222 0.00 0.00 33.53 3.51
498 512 3.544607 ATCGAGCTCGCCCATGCT 61.545 61.111 30.97 6.40 42.82 3.79
499 513 3.344215 CATCGAGCTCGCCCATGC 61.344 66.667 30.97 0.00 39.60 4.06
500 514 3.344215 GCATCGAGCTCGCCCATG 61.344 66.667 30.97 27.12 41.15 3.66
501 515 4.957684 CGCATCGAGCTCGCCCAT 62.958 66.667 30.97 16.80 42.61 4.00
510 524 3.496875 CTCTCCCAGCCGCATCGAG 62.497 68.421 0.00 0.00 0.00 4.04
511 525 3.531207 CTCTCCCAGCCGCATCGA 61.531 66.667 0.00 0.00 0.00 3.59
512 526 3.842923 ACTCTCCCAGCCGCATCG 61.843 66.667 0.00 0.00 0.00 3.84
513 527 2.202987 CACTCTCCCAGCCGCATC 60.203 66.667 0.00 0.00 0.00 3.91
514 528 4.479993 GCACTCTCCCAGCCGCAT 62.480 66.667 0.00 0.00 0.00 4.73
520 534 4.463879 CCCTGCGCACTCTCCCAG 62.464 72.222 5.66 0.00 0.00 4.45
523 537 4.021925 AACCCCTGCGCACTCTCC 62.022 66.667 5.66 0.00 0.00 3.71
524 538 2.743928 CAACCCCTGCGCACTCTC 60.744 66.667 5.66 0.00 0.00 3.20
538 552 0.035739 TTCCTCTGTTACCGGGCAAC 59.964 55.000 6.32 10.46 0.00 4.17
539 553 0.323629 CTTCCTCTGTTACCGGGCAA 59.676 55.000 6.32 0.00 0.00 4.52
540 554 0.543410 TCTTCCTCTGTTACCGGGCA 60.543 55.000 6.32 0.24 0.00 5.36
541 555 0.611714 TTCTTCCTCTGTTACCGGGC 59.388 55.000 6.32 0.00 0.00 6.13
542 556 2.176889 TCTTCTTCCTCTGTTACCGGG 58.823 52.381 6.32 0.00 0.00 5.73
543 557 3.851098 CTTCTTCTTCCTCTGTTACCGG 58.149 50.000 0.00 0.00 0.00 5.28
544 558 3.254892 GCTTCTTCTTCCTCTGTTACCG 58.745 50.000 0.00 0.00 0.00 4.02
545 559 3.997681 GTGCTTCTTCTTCCTCTGTTACC 59.002 47.826 0.00 0.00 0.00 2.85
546 560 3.675698 CGTGCTTCTTCTTCCTCTGTTAC 59.324 47.826 0.00 0.00 0.00 2.50
547 561 3.306088 CCGTGCTTCTTCTTCCTCTGTTA 60.306 47.826 0.00 0.00 0.00 2.41
548 562 2.548920 CCGTGCTTCTTCTTCCTCTGTT 60.549 50.000 0.00 0.00 0.00 3.16
549 563 1.001406 CCGTGCTTCTTCTTCCTCTGT 59.999 52.381 0.00 0.00 0.00 3.41
550 564 1.674221 CCCGTGCTTCTTCTTCCTCTG 60.674 57.143 0.00 0.00 0.00 3.35
551 565 0.610687 CCCGTGCTTCTTCTTCCTCT 59.389 55.000 0.00 0.00 0.00 3.69
552 566 0.391793 CCCCGTGCTTCTTCTTCCTC 60.392 60.000 0.00 0.00 0.00 3.71
553 567 0.836400 TCCCCGTGCTTCTTCTTCCT 60.836 55.000 0.00 0.00 0.00 3.36
554 568 0.036306 TTCCCCGTGCTTCTTCTTCC 59.964 55.000 0.00 0.00 0.00 3.46
555 569 1.740025 CATTCCCCGTGCTTCTTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
556 570 1.351017 TCATTCCCCGTGCTTCTTCTT 59.649 47.619 0.00 0.00 0.00 2.52
557 571 0.984230 TCATTCCCCGTGCTTCTTCT 59.016 50.000 0.00 0.00 0.00 2.85
558 572 1.066143 TCTCATTCCCCGTGCTTCTTC 60.066 52.381 0.00 0.00 0.00 2.87
559 573 0.984230 TCTCATTCCCCGTGCTTCTT 59.016 50.000 0.00 0.00 0.00 2.52
560 574 1.134280 CATCTCATTCCCCGTGCTTCT 60.134 52.381 0.00 0.00 0.00 2.85
561 575 1.134401 TCATCTCATTCCCCGTGCTTC 60.134 52.381 0.00 0.00 0.00 3.86
562 576 0.911769 TCATCTCATTCCCCGTGCTT 59.088 50.000 0.00 0.00 0.00 3.91
563 577 0.911769 TTCATCTCATTCCCCGTGCT 59.088 50.000 0.00 0.00 0.00 4.40
564 578 1.750193 TTTCATCTCATTCCCCGTGC 58.250 50.000 0.00 0.00 0.00 5.34
565 579 2.545526 CGATTTCATCTCATTCCCCGTG 59.454 50.000 0.00 0.00 0.00 4.94
566 580 2.485479 CCGATTTCATCTCATTCCCCGT 60.485 50.000 0.00 0.00 0.00 5.28
567 581 2.146342 CCGATTTCATCTCATTCCCCG 58.854 52.381 0.00 0.00 0.00 5.73
568 582 2.508526 CCCGATTTCATCTCATTCCCC 58.491 52.381 0.00 0.00 0.00 4.81
569 583 1.882623 GCCCGATTTCATCTCATTCCC 59.117 52.381 0.00 0.00 0.00 3.97
570 584 1.532868 CGCCCGATTTCATCTCATTCC 59.467 52.381 0.00 0.00 0.00 3.01
571 585 1.532868 CCGCCCGATTTCATCTCATTC 59.467 52.381 0.00 0.00 0.00 2.67
572 586 1.134098 ACCGCCCGATTTCATCTCATT 60.134 47.619 0.00 0.00 0.00 2.57
573 587 0.469917 ACCGCCCGATTTCATCTCAT 59.530 50.000 0.00 0.00 0.00 2.90
574 588 0.251916 AACCGCCCGATTTCATCTCA 59.748 50.000 0.00 0.00 0.00 3.27
575 589 1.865340 GTAACCGCCCGATTTCATCTC 59.135 52.381 0.00 0.00 0.00 2.75
576 590 1.208535 TGTAACCGCCCGATTTCATCT 59.791 47.619 0.00 0.00 0.00 2.90
577 591 1.597663 CTGTAACCGCCCGATTTCATC 59.402 52.381 0.00 0.00 0.00 2.92
578 592 1.663695 CTGTAACCGCCCGATTTCAT 58.336 50.000 0.00 0.00 0.00 2.57
579 593 0.391927 CCTGTAACCGCCCGATTTCA 60.392 55.000 0.00 0.00 0.00 2.69
580 594 0.108041 TCCTGTAACCGCCCGATTTC 60.108 55.000 0.00 0.00 0.00 2.17
581 595 0.107848 CTCCTGTAACCGCCCGATTT 60.108 55.000 0.00 0.00 0.00 2.17
582 596 1.262640 ACTCCTGTAACCGCCCGATT 61.263 55.000 0.00 0.00 0.00 3.34
583 597 1.673808 GACTCCTGTAACCGCCCGAT 61.674 60.000 0.00 0.00 0.00 4.18
584 598 2.283388 ACTCCTGTAACCGCCCGA 60.283 61.111 0.00 0.00 0.00 5.14
585 599 2.183555 GACTCCTGTAACCGCCCG 59.816 66.667 0.00 0.00 0.00 6.13
586 600 0.685458 TAGGACTCCTGTAACCGCCC 60.685 60.000 7.98 0.00 34.61 6.13
587 601 1.188863 TTAGGACTCCTGTAACCGCC 58.811 55.000 7.98 0.00 34.61 6.13
588 602 3.195661 CAATTAGGACTCCTGTAACCGC 58.804 50.000 7.98 0.00 34.61 5.68
589 603 3.449737 TCCAATTAGGACTCCTGTAACCG 59.550 47.826 7.98 0.00 43.07 4.44
601 615 2.037144 GTCCTAGCCGTCCAATTAGGA 58.963 52.381 0.00 0.00 46.75 2.94
602 616 1.269621 CGTCCTAGCCGTCCAATTAGG 60.270 57.143 0.00 0.00 39.47 2.69
603 617 1.407979 ACGTCCTAGCCGTCCAATTAG 59.592 52.381 0.39 0.00 31.97 1.73
604 618 1.135527 CACGTCCTAGCCGTCCAATTA 59.864 52.381 3.05 0.00 36.17 1.40
605 619 0.108329 CACGTCCTAGCCGTCCAATT 60.108 55.000 3.05 0.00 36.17 2.32
606 620 0.968901 TCACGTCCTAGCCGTCCAAT 60.969 55.000 3.05 0.00 36.17 3.16
607 621 1.604308 TCACGTCCTAGCCGTCCAA 60.604 57.895 3.05 0.00 36.17 3.53
608 622 2.034532 TCACGTCCTAGCCGTCCA 59.965 61.111 3.05 0.00 36.17 4.02
609 623 2.488820 GTCACGTCCTAGCCGTCC 59.511 66.667 3.05 0.00 36.17 4.79
610 624 2.488820 GGTCACGTCCTAGCCGTC 59.511 66.667 3.05 0.00 36.17 4.79
611 625 3.437795 CGGTCACGTCCTAGCCGT 61.438 66.667 0.39 0.39 39.52 5.68
612 626 4.189188 CCGGTCACGTCCTAGCCG 62.189 72.222 0.00 0.00 41.82 5.52
613 627 4.509737 GCCGGTCACGTCCTAGCC 62.510 72.222 1.90 0.00 38.78 3.93
614 628 4.509737 GGCCGGTCACGTCCTAGC 62.510 72.222 0.00 0.00 34.76 3.42
615 629 3.834799 GGGCCGGTCACGTCCTAG 61.835 72.222 9.07 0.00 38.40 3.02
616 630 4.682334 TGGGCCGGTCACGTCCTA 62.682 66.667 9.07 0.00 38.40 2.94
618 632 4.629523 TTTGGGCCGGTCACGTCC 62.630 66.667 9.07 0.00 37.41 4.79
619 633 3.047877 CTTTGGGCCGGTCACGTC 61.048 66.667 9.07 0.00 38.78 4.34
620 634 2.897172 AAACTTTGGGCCGGTCACGT 62.897 55.000 9.07 2.06 38.78 4.49
621 635 2.190841 AAACTTTGGGCCGGTCACG 61.191 57.895 9.07 1.43 40.55 4.35
622 636 1.362355 CAAACTTTGGGCCGGTCAC 59.638 57.895 9.07 0.00 0.00 3.67
623 637 3.849064 CAAACTTTGGGCCGGTCA 58.151 55.556 9.07 1.16 0.00 4.02
648 662 2.355956 GACTATAGGCGCCGGTGC 60.356 66.667 31.86 31.86 0.00 5.01
649 663 2.338984 GGACTATAGGCGCCGGTG 59.661 66.667 23.20 11.67 0.00 4.94
650 664 2.916181 GGGACTATAGGCGCCGGT 60.916 66.667 23.20 18.27 0.00 5.28
651 665 3.692406 GGGGACTATAGGCGCCGG 61.692 72.222 24.72 15.03 0.00 6.13
652 666 3.692406 GGGGGACTATAGGCGCCG 61.692 72.222 29.86 9.47 37.94 6.46
653 667 1.489560 AATGGGGGACTATAGGCGCC 61.490 60.000 29.50 29.50 36.47 6.53
654 668 0.400594 AAATGGGGGACTATAGGCGC 59.599 55.000 14.22 14.22 0.00 6.53
655 669 2.951229 AAAATGGGGGACTATAGGCG 57.049 50.000 4.43 0.00 0.00 5.52
656 670 6.518369 GCAAAATAAAATGGGGGACTATAGGC 60.518 42.308 4.43 0.00 0.00 3.93
657 671 6.782494 AGCAAAATAAAATGGGGGACTATAGG 59.218 38.462 4.43 0.00 0.00 2.57
658 672 7.661040 CAGCAAAATAAAATGGGGGACTATAG 58.339 38.462 0.00 0.00 0.00 1.31
659 673 6.041523 GCAGCAAAATAAAATGGGGGACTATA 59.958 38.462 0.00 0.00 0.00 1.31
660 674 5.163311 GCAGCAAAATAAAATGGGGGACTAT 60.163 40.000 0.00 0.00 0.00 2.12
661 675 4.161377 GCAGCAAAATAAAATGGGGGACTA 59.839 41.667 0.00 0.00 0.00 2.59
662 676 3.055167 GCAGCAAAATAAAATGGGGGACT 60.055 43.478 0.00 0.00 0.00 3.85
663 677 3.270027 GCAGCAAAATAAAATGGGGGAC 58.730 45.455 0.00 0.00 0.00 4.46
664 678 2.909006 TGCAGCAAAATAAAATGGGGGA 59.091 40.909 0.00 0.00 0.00 4.81
665 679 3.347077 TGCAGCAAAATAAAATGGGGG 57.653 42.857 0.00 0.00 0.00 5.40
666 680 5.900865 AAATGCAGCAAAATAAAATGGGG 57.099 34.783 0.00 0.00 0.00 4.96
667 681 7.754475 GGTTTAAATGCAGCAAAATAAAATGGG 59.246 33.333 0.00 0.00 0.00 4.00
668 682 8.513774 AGGTTTAAATGCAGCAAAATAAAATGG 58.486 29.630 0.00 0.00 0.00 3.16
669 683 9.896263 AAGGTTTAAATGCAGCAAAATAAAATG 57.104 25.926 0.00 0.00 0.00 2.32
674 688 9.717942 ACAATAAGGTTTAAATGCAGCAAAATA 57.282 25.926 0.00 0.00 0.00 1.40
675 689 8.620116 ACAATAAGGTTTAAATGCAGCAAAAT 57.380 26.923 0.00 0.00 0.00 1.82
676 690 8.443953 AACAATAAGGTTTAAATGCAGCAAAA 57.556 26.923 0.00 0.00 0.00 2.44
677 691 8.341173 CAAACAATAAGGTTTAAATGCAGCAAA 58.659 29.630 0.00 0.00 38.86 3.68
678 692 7.712639 TCAAACAATAAGGTTTAAATGCAGCAA 59.287 29.630 0.00 0.00 38.86 3.91
679 693 7.170658 GTCAAACAATAAGGTTTAAATGCAGCA 59.829 33.333 0.00 0.00 38.86 4.41
680 694 7.360017 GGTCAAACAATAAGGTTTAAATGCAGC 60.360 37.037 0.00 0.00 38.86 5.25
681 695 7.655328 TGGTCAAACAATAAGGTTTAAATGCAG 59.345 33.333 0.00 0.00 38.86 4.41
682 696 7.500992 TGGTCAAACAATAAGGTTTAAATGCA 58.499 30.769 0.00 0.00 38.86 3.96
683 697 7.954788 TGGTCAAACAATAAGGTTTAAATGC 57.045 32.000 0.00 0.00 38.86 3.56
684 698 9.703892 TCATGGTCAAACAATAAGGTTTAAATG 57.296 29.630 0.00 0.00 38.86 2.32
686 700 9.703892 CATCATGGTCAAACAATAAGGTTTAAA 57.296 29.630 0.00 0.00 38.86 1.52
687 701 8.310382 CCATCATGGTCAAACAATAAGGTTTAA 58.690 33.333 0.00 0.00 34.46 1.52
688 702 7.835822 CCATCATGGTCAAACAATAAGGTTTA 58.164 34.615 0.00 0.00 34.46 2.01
689 703 6.700352 CCATCATGGTCAAACAATAAGGTTT 58.300 36.000 0.00 0.00 35.63 3.27
690 704 6.284891 CCATCATGGTCAAACAATAAGGTT 57.715 37.500 0.00 0.00 31.35 3.50
691 705 5.920193 CCATCATGGTCAAACAATAAGGT 57.080 39.130 0.00 0.00 31.35 3.50
705 719 6.653526 TCATAAATAAAGCCACCATCATGG 57.346 37.500 0.54 0.54 45.02 3.66
706 720 6.643770 GCTTCATAAATAAAGCCACCATCATG 59.356 38.462 0.00 0.00 41.60 3.07
707 721 6.515531 CGCTTCATAAATAAAGCCACCATCAT 60.516 38.462 1.84 0.00 43.94 2.45
708 722 5.221028 CGCTTCATAAATAAAGCCACCATCA 60.221 40.000 1.84 0.00 43.94 3.07
709 723 5.215160 CGCTTCATAAATAAAGCCACCATC 58.785 41.667 1.84 0.00 43.94 3.51
710 724 4.037923 CCGCTTCATAAATAAAGCCACCAT 59.962 41.667 1.84 0.00 43.94 3.55
711 725 3.380004 CCGCTTCATAAATAAAGCCACCA 59.620 43.478 1.84 0.00 43.94 4.17
712 726 3.243401 CCCGCTTCATAAATAAAGCCACC 60.243 47.826 1.84 0.00 43.94 4.61
713 727 3.380320 ACCCGCTTCATAAATAAAGCCAC 59.620 43.478 1.84 0.00 43.94 5.01
714 728 3.626930 ACCCGCTTCATAAATAAAGCCA 58.373 40.909 1.84 0.00 43.94 4.75
715 729 5.959618 ATACCCGCTTCATAAATAAAGCC 57.040 39.130 1.84 0.00 43.94 4.35
716 730 8.642908 AAAAATACCCGCTTCATAAATAAAGC 57.357 30.769 0.00 0.00 43.49 3.51
762 776 3.324846 TGACAAGAGCTTAGCCTCAGAAA 59.675 43.478 0.00 0.00 34.26 2.52
763 777 2.899900 TGACAAGAGCTTAGCCTCAGAA 59.100 45.455 0.00 0.00 34.26 3.02
764 778 2.529632 TGACAAGAGCTTAGCCTCAGA 58.470 47.619 0.00 0.00 34.26 3.27
765 779 3.325293 TTGACAAGAGCTTAGCCTCAG 57.675 47.619 0.00 0.00 34.26 3.35
766 780 3.988976 ATTGACAAGAGCTTAGCCTCA 57.011 42.857 0.00 0.00 34.26 3.86
767 781 4.572795 GGTTATTGACAAGAGCTTAGCCTC 59.427 45.833 0.00 0.00 0.00 4.70
768 782 4.226168 AGGTTATTGACAAGAGCTTAGCCT 59.774 41.667 0.00 0.00 0.00 4.58
769 783 4.518249 AGGTTATTGACAAGAGCTTAGCC 58.482 43.478 0.00 0.00 0.00 3.93
773 787 3.600388 CCGAGGTTATTGACAAGAGCTT 58.400 45.455 7.29 0.00 0.00 3.74
784 798 7.393515 GGATATTTGCTATTTCCCGAGGTTATT 59.606 37.037 0.00 0.00 0.00 1.40
895 927 1.662044 CTGCCTTTGTGTTCTGGGC 59.338 57.895 0.00 0.00 42.73 5.36
897 929 1.662044 GCCTGCCTTTGTGTTCTGG 59.338 57.895 0.00 0.00 0.00 3.86
898 930 0.825010 AGGCCTGCCTTTGTGTTCTG 60.825 55.000 3.11 0.00 45.70 3.02
899 931 1.538666 AGGCCTGCCTTTGTGTTCT 59.461 52.632 3.11 0.00 45.70 3.01
911 943 2.855209 CCTATCAATCCAGAGGCCTG 57.145 55.000 12.00 0.00 40.09 4.85
1062 1114 1.150536 CGGAGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1077 1129 4.783621 GCCTGCAGCATCCACGGA 62.784 66.667 8.66 0.00 42.97 4.69
1146 1204 6.922247 AAACATGCAGATATCTGACAAGAG 57.078 37.500 32.38 22.45 46.59 2.85
1236 1294 9.438291 CTACAGTAACATTTTTCTGTTCTGTTG 57.562 33.333 18.17 14.87 39.58 3.33
1257 1315 6.320494 ACAGAAGTCTGAACTACACTACAG 57.680 41.667 15.15 0.00 46.59 2.74
1258 1316 6.710597 AACAGAAGTCTGAACTACACTACA 57.289 37.500 15.15 0.00 46.59 2.74
1259 1317 7.380065 CAGAAACAGAAGTCTGAACTACACTAC 59.620 40.741 15.15 0.00 46.59 2.73
1260 1318 7.284716 TCAGAAACAGAAGTCTGAACTACACTA 59.715 37.037 15.15 0.00 45.58 2.74
1261 1319 6.096987 TCAGAAACAGAAGTCTGAACTACACT 59.903 38.462 15.15 2.36 45.58 3.55
1262 1320 6.273825 TCAGAAACAGAAGTCTGAACTACAC 58.726 40.000 15.15 0.37 45.58 2.90
1263 1321 6.465439 TCAGAAACAGAAGTCTGAACTACA 57.535 37.500 15.15 0.20 45.58 2.74
1269 1327 6.706270 GGTAACATTCAGAAACAGAAGTCTGA 59.294 38.462 15.15 0.00 46.59 3.27
1278 1336 4.062293 CCGTCAGGTAACATTCAGAAACA 58.938 43.478 0.00 0.00 41.41 2.83
1325 1390 1.093972 TATCCAAACACGCAGCCATG 58.906 50.000 0.00 0.00 0.00 3.66
1329 1394 2.440501 CGAATTATCCAAACACGCAGC 58.559 47.619 0.00 0.00 0.00 5.25
1334 1399 4.082463 TGGCTTTCCGAATTATCCAAACAC 60.082 41.667 0.00 0.00 34.14 3.32
1344 1409 2.270352 TGTGTCTGGCTTTCCGAATT 57.730 45.000 0.00 0.00 34.14 2.17
1351 1420 5.598417 AGAAATTAAGGTTGTGTCTGGCTTT 59.402 36.000 0.00 0.00 0.00 3.51
1353 1422 4.520492 CAGAAATTAAGGTTGTGTCTGGCT 59.480 41.667 0.00 0.00 0.00 4.75
1358 1427 7.805071 CAGAATCACAGAAATTAAGGTTGTGTC 59.195 37.037 10.20 4.55 39.93 3.67
1365 1434 7.337689 TCCATCACAGAATCACAGAAATTAAGG 59.662 37.037 0.00 0.00 0.00 2.69
1366 1435 8.272545 TCCATCACAGAATCACAGAAATTAAG 57.727 34.615 0.00 0.00 0.00 1.85
1368 1437 7.201758 GCATCCATCACAGAATCACAGAAATTA 60.202 37.037 0.00 0.00 0.00 1.40
1374 1443 3.275999 TGCATCCATCACAGAATCACAG 58.724 45.455 0.00 0.00 0.00 3.66
1375 1444 3.275999 CTGCATCCATCACAGAATCACA 58.724 45.455 0.00 0.00 33.10 3.58
1376 1445 3.064958 CACTGCATCCATCACAGAATCAC 59.935 47.826 0.00 0.00 35.38 3.06
1379 1448 2.651455 CCACTGCATCCATCACAGAAT 58.349 47.619 0.00 0.00 35.38 2.40
1387 1456 4.511246 CCCGCCCACTGCATCCAT 62.511 66.667 0.00 0.00 41.33 3.41
1399 1468 3.056328 GCAAACTGACCTCCCGCC 61.056 66.667 0.00 0.00 0.00 6.13
1401 1470 0.671781 CAGAGCAAACTGACCTCCCG 60.672 60.000 0.00 0.00 39.94 5.14
1491 1560 1.461127 GACACAGCAGTTCCGACAATC 59.539 52.381 0.00 0.00 0.00 2.67
1494 1563 0.464036 AAGACACAGCAGTTCCGACA 59.536 50.000 0.00 0.00 0.00 4.35
1496 1565 0.750249 TGAAGACACAGCAGTTCCGA 59.250 50.000 0.00 0.00 0.00 4.55
1508 1577 0.106918 AAGCAAACCGGGTGAAGACA 60.107 50.000 6.32 0.00 0.00 3.41
1509 1578 0.591659 GAAGCAAACCGGGTGAAGAC 59.408 55.000 6.32 0.00 0.00 3.01
1516 1585 2.420022 CTGTTATCTGAAGCAAACCGGG 59.580 50.000 6.32 0.00 0.00 5.73
1562 1631 6.939730 TGAATTCAGAGTGTGCACCTTTATTA 59.060 34.615 15.69 0.00 0.00 0.98
1594 1663 9.217223 CAAAATTCAGAAAACAAAGAGCAAATG 57.783 29.630 0.00 0.00 0.00 2.32
1597 1666 6.878389 ACCAAAATTCAGAAAACAAAGAGCAA 59.122 30.769 0.00 0.00 0.00 3.91
1706 1775 2.885135 TCCATCCAAGCAGACATGTT 57.115 45.000 0.00 0.00 0.00 2.71
1715 1799 1.532868 GTGCGATACATCCATCCAAGC 59.467 52.381 0.00 0.00 0.00 4.01
1729 1813 1.800586 CTGTTGCTACTTGTGTGCGAT 59.199 47.619 0.00 0.00 0.00 4.58
1730 1814 1.217001 CTGTTGCTACTTGTGTGCGA 58.783 50.000 0.00 0.00 0.00 5.10
1732 1816 3.108144 CAAACTGTTGCTACTTGTGTGC 58.892 45.455 0.00 0.00 0.00 4.57
1783 1867 3.428870 CAGCCAAACTACTCTGTAACACG 59.571 47.826 0.00 0.00 0.00 4.49
1922 2006 3.565307 TCCAAGGAAGTGCAAAATCTGT 58.435 40.909 0.00 0.00 0.00 3.41
1936 2020 6.493166 AGTGAATTTGGTATCATTCCAAGGA 58.507 36.000 0.00 0.00 44.26 3.36
1951 2035 5.665459 AGAGGAGTTATCGGAGTGAATTTG 58.335 41.667 0.00 0.00 0.00 2.32
1952 2036 5.450688 CGAGAGGAGTTATCGGAGTGAATTT 60.451 44.000 0.00 0.00 32.93 1.82
1958 2042 2.841215 CTCGAGAGGAGTTATCGGAGT 58.159 52.381 6.58 0.00 38.02 3.85
1978 2062 3.369385 CAATTGATCATCGCTTTGCTCC 58.631 45.455 0.00 0.00 0.00 4.70
2053 2140 0.107165 CCCCGGGGATCTTTTCTGAC 60.107 60.000 38.41 0.00 37.50 3.51
2066 2153 0.315886 GCTTTTACACAAACCCCGGG 59.684 55.000 15.80 15.80 0.00 5.73
2138 2225 4.807643 GCCTGGATAGTTTTTCCACTCAGT 60.808 45.833 0.00 0.00 38.35 3.41
2194 2281 3.059352 ACCTTGATAGTCACCAGCAAC 57.941 47.619 0.00 0.00 0.00 4.17
2240 2329 4.509230 CAGACGAGGACATGAACAATATGG 59.491 45.833 0.00 0.00 0.00 2.74
2393 2482 2.676463 GCTTGCAGTCTACTCTTCAGGG 60.676 54.545 0.00 0.00 0.00 4.45
2415 2504 1.001487 CTCTCTCTGCAGCAGTATCCG 60.001 57.143 22.10 7.76 32.61 4.18
2418 2507 2.157640 ACCTCTCTCTGCAGCAGTAT 57.842 50.000 22.10 0.00 32.61 2.12
2466 2555 3.876914 CGGTGTATGTCCTTGCAATGTAT 59.123 43.478 0.00 0.00 0.00 2.29
2496 2585 3.243267 GGAGTAGATCCTCGAAAGCTGTC 60.243 52.174 0.00 0.00 45.64 3.51
2538 2627 5.771165 GGTACAGGAGATAAGGAGAGGTTAG 59.229 48.000 0.00 0.00 0.00 2.34
2597 2686 0.813184 AGCCTGCATTGTCATTTCCG 59.187 50.000 0.00 0.00 0.00 4.30
2660 2749 3.379688 GGTTGAGAATTTGCATCCTCTCC 59.620 47.826 13.78 9.09 34.62 3.71
2768 2857 6.095300 TGACACATATTGAAATAGCTGTTGGG 59.905 38.462 0.00 0.00 0.00 4.12
2775 2864 7.008628 GCACAAACTGACACATATTGAAATAGC 59.991 37.037 0.00 0.00 0.00 2.97
2940 3029 0.031585 TCCGCGTCTATTGGATTCCG 59.968 55.000 4.92 0.00 0.00 4.30
3092 3181 1.942776 TGTGAGAGGGCATTCAGAGA 58.057 50.000 0.00 0.00 0.00 3.10
3097 3187 3.272574 TCTGAATGTGAGAGGGCATTC 57.727 47.619 9.52 9.52 46.53 2.67
3165 3273 7.070571 AGGGGAGTTGTTATTCTCTTATCTGAG 59.929 40.741 0.00 0.00 35.52 3.35
3238 3346 4.082190 CCCTTCAGACAGACTTATTCGTCA 60.082 45.833 0.00 0.00 36.38 4.35
3240 3348 3.368531 GCCCTTCAGACAGACTTATTCGT 60.369 47.826 0.00 0.00 0.00 3.85
3247 3355 0.759346 AAACGCCCTTCAGACAGACT 59.241 50.000 0.00 0.00 0.00 3.24
3262 3370 1.862201 TCACGTCCTGCAGTTTAAACG 59.138 47.619 13.81 15.34 36.29 3.60
3305 3413 1.704007 GGAAGATGGCCTCCTCTGGG 61.704 65.000 3.32 0.00 0.00 4.45
3347 3455 4.874521 CTGTCCAGGACCAGGAGA 57.125 61.111 17.59 4.01 35.42 3.71
3386 3494 3.037833 TGTCGCAGCTTCAGCACG 61.038 61.111 0.75 4.81 45.16 5.34
3401 3509 3.461773 CCATCCTCGAGGCCGTGT 61.462 66.667 27.39 6.94 37.05 4.49
3470 3578 5.104776 TGACTTTTCGATCTTCCTGATCCAT 60.105 40.000 0.00 0.00 46.65 3.41
3485 3593 4.153117 AGCTTCAACATAGCTGACTTTTCG 59.847 41.667 0.00 0.00 46.71 3.46
3497 3605 3.368427 CCTCGTTCCTGAGCTTCAACATA 60.368 47.826 0.00 0.00 34.56 2.29
3502 3610 0.603569 GTCCTCGTTCCTGAGCTTCA 59.396 55.000 0.00 0.00 34.56 3.02
3570 3678 3.623510 GCCAATCTGCACTAGAAAGGTAC 59.376 47.826 0.00 0.00 39.30 3.34
3571 3679 3.263170 TGCCAATCTGCACTAGAAAGGTA 59.737 43.478 0.00 0.00 39.30 3.08
3572 3680 2.040278 TGCCAATCTGCACTAGAAAGGT 59.960 45.455 0.00 0.00 39.30 3.50
3665 3773 2.710220 TGTGCTGCAATGTGATTCAC 57.290 45.000 2.77 9.93 34.56 3.18
3670 3778 1.267533 GTGTCATGTGCTGCAATGTGA 59.732 47.619 2.77 6.34 0.00 3.58
3750 3858 4.075682 TGTTTCACTGTCAGTTCACCAAA 58.924 39.130 1.67 0.00 0.00 3.28
3821 3929 3.307445 CAGGCCCTGAGACTGGAG 58.693 66.667 4.15 0.00 32.44 3.86
4039 4147 4.966787 GGGTCCAGGGTGCGCAAA 62.967 66.667 14.00 0.00 0.00 3.68
4073 4181 0.317479 ACTTTCTTCTACCGCGCAGT 59.683 50.000 8.75 4.34 0.00 4.40
4081 4189 8.394121 CCAGAATATTTGCTGACTTTCTTCTAC 58.606 37.037 5.87 0.00 34.06 2.59
4091 4199 4.216257 ACACACACCAGAATATTTGCTGAC 59.784 41.667 5.87 0.00 34.06 3.51
4100 4208 6.767524 ACAAAGAAAACACACACCAGAATA 57.232 33.333 0.00 0.00 0.00 1.75
4131 4239 6.956393 TTCGCAAATTAAAGAAACGTACAC 57.044 33.333 0.00 0.00 0.00 2.90
4323 4466 6.045955 TCCGAGAACCTTTTTCCAAATTTTG 58.954 36.000 1.99 1.99 0.00 2.44
4324 4467 6.228616 TCCGAGAACCTTTTTCCAAATTTT 57.771 33.333 0.00 0.00 0.00 1.82
4364 4507 5.062528 GCCTGGGAACATTTTTCAAATTCA 58.937 37.500 0.00 0.00 41.51 2.57
4371 4514 4.335400 TTGAAGCCTGGGAACATTTTTC 57.665 40.909 0.00 0.00 41.51 2.29
4383 4526 2.034939 TCAGCACATTGTTTGAAGCCTG 59.965 45.455 0.00 0.00 32.73 4.85
4384 4527 2.309613 TCAGCACATTGTTTGAAGCCT 58.690 42.857 0.00 0.00 32.73 4.58
4400 4543 5.697633 ACATGGACATTGTTTGAAATTCAGC 59.302 36.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.