Multiple sequence alignment - TraesCS1B01G466800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G466800 chr1B 100.000 3419 0 0 1 3419 676950850 676954268 0.000000e+00 6314
1 TraesCS1B01G466800 chr1B 85.197 2790 384 20 1 2777 676852860 676855633 0.000000e+00 2837
2 TraesCS1B01G466800 chr1B 84.309 2785 391 36 1 2760 676811118 676813881 0.000000e+00 2680
3 TraesCS1B01G466800 chr1B 81.284 2741 453 46 1 2713 29085947 29088655 0.000000e+00 2165
4 TraesCS1B01G466800 chr1B 80.434 2811 475 48 1 2788 29824899 29827657 0.000000e+00 2074
5 TraesCS1B01G466800 chr1B 80.189 2756 462 66 1 2706 29899312 29902033 0.000000e+00 1988
6 TraesCS1B01G466800 chr1D 85.018 2256 308 18 1 2245 486117109 486119345 0.000000e+00 2266
7 TraesCS1B01G466800 chr1D 81.431 2768 456 44 10 2744 19342228 19344970 0.000000e+00 2211
8 TraesCS1B01G466800 chr1D 80.460 2523 426 46 2 2500 19808219 19810698 0.000000e+00 1866
9 TraesCS1B01G466800 chr1D 74.069 1342 276 45 1294 2610 19796273 19797567 5.130000e-133 484
10 TraesCS1B01G466800 chr1D 75.692 506 89 26 1773 2254 19522548 19523043 4.440000e-54 222
11 TraesCS1B01G466800 chrUn 80.985 2740 469 39 10 2721 116820337 116823052 0.000000e+00 2126
12 TraesCS1B01G466800 chrUn 80.145 2755 465 65 1 2706 180338190 180340911 0.000000e+00 1982
13 TraesCS1B01G466800 chrUn 82.132 319 51 6 1811 2126 304673708 304673393 5.620000e-68 268
14 TraesCS1B01G466800 chrUn 76.289 388 65 18 1882 2254 173288 172913 7.540000e-42 182
15 TraesCS1B01G466800 chr1A 80.080 2510 438 49 303 2776 21076955 21079438 0.000000e+00 1808
16 TraesCS1B01G466800 chr1A 78.061 1372 268 28 1435 2788 21255211 21256567 0.000000e+00 835
17 TraesCS1B01G466800 chr1A 74.367 1342 269 49 1294 2610 21235603 21236894 1.420000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G466800 chr1B 676950850 676954268 3418 False 6314 6314 100.000 1 3419 1 chr1B.!!$F6 3418
1 TraesCS1B01G466800 chr1B 676852860 676855633 2773 False 2837 2837 85.197 1 2777 1 chr1B.!!$F5 2776
2 TraesCS1B01G466800 chr1B 676811118 676813881 2763 False 2680 2680 84.309 1 2760 1 chr1B.!!$F4 2759
3 TraesCS1B01G466800 chr1B 29085947 29088655 2708 False 2165 2165 81.284 1 2713 1 chr1B.!!$F1 2712
4 TraesCS1B01G466800 chr1B 29824899 29827657 2758 False 2074 2074 80.434 1 2788 1 chr1B.!!$F2 2787
5 TraesCS1B01G466800 chr1B 29899312 29902033 2721 False 1988 1988 80.189 1 2706 1 chr1B.!!$F3 2705
6 TraesCS1B01G466800 chr1D 486117109 486119345 2236 False 2266 2266 85.018 1 2245 1 chr1D.!!$F5 2244
7 TraesCS1B01G466800 chr1D 19342228 19344970 2742 False 2211 2211 81.431 10 2744 1 chr1D.!!$F1 2734
8 TraesCS1B01G466800 chr1D 19808219 19810698 2479 False 1866 1866 80.460 2 2500 1 chr1D.!!$F4 2498
9 TraesCS1B01G466800 chr1D 19796273 19797567 1294 False 484 484 74.069 1294 2610 1 chr1D.!!$F3 1316
10 TraesCS1B01G466800 chrUn 116820337 116823052 2715 False 2126 2126 80.985 10 2721 1 chrUn.!!$F1 2711
11 TraesCS1B01G466800 chrUn 180338190 180340911 2721 False 1982 1982 80.145 1 2706 1 chrUn.!!$F2 2705
12 TraesCS1B01G466800 chr1A 21076955 21079438 2483 False 1808 1808 80.080 303 2776 1 chr1A.!!$F1 2473
13 TraesCS1B01G466800 chr1A 21255211 21256567 1356 False 835 835 78.061 1435 2788 1 chr1A.!!$F3 1353
14 TraesCS1B01G466800 chr1A 21235603 21236894 1291 False 503 503 74.367 1294 2610 1 chr1A.!!$F2 1316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 824 0.035152 CAGGCTCAGCACCACCATTA 60.035 55.0 0.0 0.0 0.0 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2766 2836 0.033504 ACTGTAGGTCGCAAGGTGTG 59.966 55.0 0.0 0.0 38.47 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 224 2.351253 CCTTCGGATCTATGCTGAGACG 60.351 54.545 0.00 0.00 0.00 4.18
473 481 3.010420 AGGTAGGCAGAGAAATTTTCGC 58.990 45.455 4.88 4.88 34.02 4.70
542 565 3.058155 CGTCCAAGAGAAGAGAACGAGAA 60.058 47.826 0.00 0.00 0.00 2.87
672 695 2.113774 CTGTTGTCAGCAGGCCCA 59.886 61.111 8.73 0.00 34.79 5.36
688 711 0.105964 CCCAACTCGTCACCTGTTCA 59.894 55.000 0.00 0.00 0.00 3.18
690 713 1.202533 CCAACTCGTCACCTGTTCACT 60.203 52.381 0.00 0.00 0.00 3.41
695 718 2.989840 CTCGTCACCTGTTCACTTCATC 59.010 50.000 0.00 0.00 0.00 2.92
704 727 3.743521 TGTTCACTTCATCTGGGTTCAG 58.256 45.455 0.00 0.00 42.21 3.02
763 786 1.530293 CAGCTCTTCAGACACTGTTGC 59.470 52.381 0.00 0.00 32.61 4.17
798 824 0.035152 CAGGCTCAGCACCACCATTA 60.035 55.000 0.00 0.00 0.00 1.90
814 840 7.655732 CACCACCATTATCGAAGTACAATCATA 59.344 37.037 0.00 0.00 0.00 2.15
837 863 2.341257 CGAGCACTGCAACTCTGTAAT 58.659 47.619 3.30 0.00 0.00 1.89
865 897 3.202151 AGAACTTCCACTTCAACCAAGGA 59.798 43.478 0.00 0.00 36.26 3.36
895 927 4.871822 TCACCTGAGGTATCTTGATCTCA 58.128 43.478 2.59 0.00 32.11 3.27
913 951 8.853077 TGATCTCACAAACAGTTCTATCAAAT 57.147 30.769 0.00 0.00 0.00 2.32
985 1023 3.937814 TCATATTGCACGAGACTTGGTT 58.062 40.909 0.00 0.00 0.00 3.67
1083 1121 1.831652 CTCCAGACCTCGGGCAACTT 61.832 60.000 0.00 0.00 0.00 2.66
1134 1172 1.115467 CGGGCTCTAGTCCTGATTGT 58.885 55.000 0.00 0.00 37.76 2.71
1179 1217 6.209391 AGGACTTAAATCTTGGTGGTGAATTG 59.791 38.462 0.00 0.00 0.00 2.32
1190 1228 3.057245 GGTGGTGAATTGGAGCTTTCTTC 60.057 47.826 0.00 0.00 0.00 2.87
1254 1292 7.079451 TCTTGGAAATAAGGAGAAACTCACT 57.921 36.000 0.00 0.00 31.08 3.41
1284 1322 9.914131 TTATCTCTTAAATGGAGTGATCATACG 57.086 33.333 0.00 0.00 31.81 3.06
1339 1377 5.357742 TGATGCTCTTAAACCTCATGCTA 57.642 39.130 0.00 0.00 0.00 3.49
1340 1378 5.933617 TGATGCTCTTAAACCTCATGCTAT 58.066 37.500 0.00 0.00 0.00 2.97
1361 1399 6.816140 GCTATGCTGGAGTTTCTAGGAATATC 59.184 42.308 0.00 0.00 28.04 1.63
1476 1519 2.491693 TGAGGAATTTCCACAATTCGGC 59.508 45.455 17.57 0.00 39.61 5.54
1506 1549 8.514330 TTAAGGCTCTTGAAGTTCTTGTTTTA 57.486 30.769 4.17 0.00 0.00 1.52
1527 1570 9.060547 GTTTTAAAAAGGTTGAACAAATTGCAG 57.939 29.630 1.31 0.00 0.00 4.41
1557 1600 1.736126 AGTCACAATTCATCTGCAGCG 59.264 47.619 9.47 2.31 0.00 5.18
1573 1616 3.056304 GCAGCGTTTCCAGCATTAAAAA 58.944 40.909 0.00 0.00 37.01 1.94
1596 1639 9.631257 AAAAATCTCAGTTTGGAAAATTTGGAT 57.369 25.926 0.00 0.00 0.00 3.41
1597 1640 8.611654 AAATCTCAGTTTGGAAAATTTGGATG 57.388 30.769 0.00 0.00 0.00 3.51
1613 1656 1.680207 GGATGCTTTTGAGAGATGGGC 59.320 52.381 0.00 0.00 0.00 5.36
1620 1666 2.514824 GAGAGATGGGCGGCAACC 60.515 66.667 12.47 0.00 0.00 3.77
1721 1767 7.284489 TGAAGCACCAAAACTCAAAGTTATAGT 59.716 33.333 0.00 0.00 37.47 2.12
1754 1800 6.567602 AGACAAGGCTCAACTATCCTTATT 57.432 37.500 0.00 0.00 38.08 1.40
1758 1804 7.275920 ACAAGGCTCAACTATCCTTATTAGTG 58.724 38.462 0.00 0.00 38.08 2.74
1842 1891 0.307760 CACCAACACCGAAGCTTGAC 59.692 55.000 2.10 0.00 0.00 3.18
1850 1899 1.347707 ACCGAAGCTTGACCAAGATCA 59.652 47.619 2.10 0.00 40.79 2.92
1866 1915 5.353678 CCAAGATCATGAAGTGTCTCTTTCC 59.646 44.000 0.00 0.00 36.40 3.13
1868 1917 4.221703 AGATCATGAAGTGTCTCTTTCCGT 59.778 41.667 0.00 0.00 36.40 4.69
1875 1924 4.543590 AGTGTCTCTTTCCGTCATGAAT 57.456 40.909 0.00 0.00 0.00 2.57
1910 1959 5.506982 GCAGCTTTTTGTTCTCATCAAGTCT 60.507 40.000 0.00 0.00 0.00 3.24
1918 1967 5.798132 TGTTCTCATCAAGTCTATTGCAGT 58.202 37.500 0.00 0.00 0.00 4.40
2000 2049 1.593750 CGCTCATCTACTGGCCTGC 60.594 63.158 9.95 0.00 0.00 4.85
2029 2078 4.098416 GTTTCGAAGCTTGGTATCATTGC 58.902 43.478 2.10 0.00 0.00 3.56
2040 2089 8.542926 AGCTTGGTATCATTGCATAGTATGATA 58.457 33.333 14.52 12.68 40.80 2.15
2100 2157 0.683504 AAGGATGCCGTACTCGAGGT 60.684 55.000 18.41 5.07 39.71 3.85
2127 2184 5.595952 GGATCAATTCCTGCCAAATCTAACT 59.404 40.000 0.00 0.00 41.78 2.24
2129 2186 4.158394 TCAATTCCTGCCAAATCTAACTGC 59.842 41.667 0.00 0.00 0.00 4.40
2130 2187 2.128771 TCCTGCCAAATCTAACTGCC 57.871 50.000 0.00 0.00 0.00 4.85
2179 2236 2.104963 ACAGAGCTTTTCGTTCTTCCCT 59.895 45.455 0.00 0.00 29.94 4.20
2180 2237 3.142174 CAGAGCTTTTCGTTCTTCCCTT 58.858 45.455 0.00 0.00 29.94 3.95
2181 2238 3.058639 CAGAGCTTTTCGTTCTTCCCTTG 60.059 47.826 0.00 0.00 29.94 3.61
2184 2241 2.031069 GCTTTTCGTTCTTCCCTTGTCC 60.031 50.000 0.00 0.00 0.00 4.02
2212 2269 6.146184 CACGACTCTGAACATTTATGAGTGTT 59.854 38.462 0.00 0.00 40.97 3.32
2216 2273 8.902540 ACTCTGAACATTTATGAGTGTTGTAA 57.097 30.769 3.00 0.00 38.57 2.41
2299 2356 1.154413 GCATCGTTGGAACACTGCG 60.154 57.895 0.00 0.00 39.29 5.18
2318 2375 0.817013 GATGGCCTTGCATCCGAAAA 59.183 50.000 3.32 0.00 0.00 2.29
2328 2385 3.286353 TGCATCCGAAAATATGCCAGAA 58.714 40.909 4.96 0.00 46.34 3.02
2334 2391 3.242413 CCGAAAATATGCCAGAACAGTCG 60.242 47.826 0.00 0.00 0.00 4.18
2358 2415 5.187772 GCCTTCACCCAGAATTAATCCTTTT 59.812 40.000 0.00 0.00 35.25 2.27
2406 2463 7.956420 ACATTACTGTAACAAGATTCGTTCA 57.044 32.000 1.73 0.00 32.49 3.18
2411 2468 2.949714 AACAAGATTCGTTCAGTGCG 57.050 45.000 0.00 0.00 0.00 5.34
2432 2489 4.026475 GCGAACATAGTTAGATGCACTCAC 60.026 45.833 0.00 0.00 0.00 3.51
2460 2517 5.425217 TCTGAGTATTAAGGATTGCAGTGGA 59.575 40.000 0.00 0.00 0.00 4.02
2501 2558 0.457337 GGTGACCTACCGTTACTGCG 60.457 60.000 0.00 0.00 40.26 5.18
2504 2561 1.739466 TGACCTACCGTTACTGCGTAG 59.261 52.381 0.00 0.00 0.00 3.51
2512 2572 3.691118 ACCGTTACTGCGTAGATTAGTCA 59.309 43.478 7.78 0.00 0.00 3.41
2514 2574 5.528690 ACCGTTACTGCGTAGATTAGTCATA 59.471 40.000 7.78 0.00 0.00 2.15
2520 2580 7.932120 ACTGCGTAGATTAGTCATATTGAAC 57.068 36.000 7.78 0.00 0.00 3.18
2544 2604 2.684881 CAAACATCTGGCATCTGTACCC 59.315 50.000 2.92 0.00 0.00 3.69
2654 2716 0.108138 AGACGGTGTCATAGCCTTGC 60.108 55.000 0.00 0.00 34.60 4.01
2684 2746 5.128919 GGATCTGTCTGATGCTGGTTTAAT 58.871 41.667 4.28 0.00 39.93 1.40
2692 2754 4.780815 TGATGCTGGTTTAATCGATCCTT 58.219 39.130 0.00 0.00 0.00 3.36
2693 2755 5.192927 TGATGCTGGTTTAATCGATCCTTT 58.807 37.500 0.00 0.00 0.00 3.11
2760 2830 2.584835 TCCTTGCCTATTGTGTTGCT 57.415 45.000 0.00 0.00 0.00 3.91
2766 2836 4.108699 TGCCTATTGTGTTGCTAATTGC 57.891 40.909 0.00 0.00 43.25 3.56
2782 2852 3.562635 GCACACCTTGCGACCTAC 58.437 61.111 0.00 0.00 42.79 3.18
2783 2853 1.301401 GCACACCTTGCGACCTACA 60.301 57.895 0.00 0.00 42.79 2.74
2784 2854 1.291877 GCACACCTTGCGACCTACAG 61.292 60.000 0.00 0.00 42.79 2.74
2785 2855 0.033504 CACACCTTGCGACCTACAGT 59.966 55.000 0.00 0.00 0.00 3.55
2786 2856 0.756903 ACACCTTGCGACCTACAGTT 59.243 50.000 0.00 0.00 0.00 3.16
2787 2857 1.140252 ACACCTTGCGACCTACAGTTT 59.860 47.619 0.00 0.00 0.00 2.66
2788 2858 2.366266 ACACCTTGCGACCTACAGTTTA 59.634 45.455 0.00 0.00 0.00 2.01
2789 2859 2.735134 CACCTTGCGACCTACAGTTTAC 59.265 50.000 0.00 0.00 0.00 2.01
2790 2860 2.631545 ACCTTGCGACCTACAGTTTACT 59.368 45.455 0.00 0.00 0.00 2.24
2791 2861 3.251571 CCTTGCGACCTACAGTTTACTC 58.748 50.000 0.00 0.00 0.00 2.59
2792 2862 3.056749 CCTTGCGACCTACAGTTTACTCT 60.057 47.826 0.00 0.00 0.00 3.24
2793 2863 3.570926 TGCGACCTACAGTTTACTCTG 57.429 47.619 0.00 0.00 40.80 3.35
2794 2864 2.260481 GCGACCTACAGTTTACTCTGC 58.740 52.381 0.00 0.00 38.84 4.26
2795 2865 2.094649 GCGACCTACAGTTTACTCTGCT 60.095 50.000 0.00 0.00 38.84 4.24
2796 2866 3.614390 GCGACCTACAGTTTACTCTGCTT 60.614 47.826 0.00 0.00 38.84 3.91
2797 2867 4.380233 GCGACCTACAGTTTACTCTGCTTA 60.380 45.833 0.00 0.00 38.84 3.09
2798 2868 5.679127 GCGACCTACAGTTTACTCTGCTTAT 60.679 44.000 0.00 0.00 38.84 1.73
2799 2869 5.744345 CGACCTACAGTTTACTCTGCTTATG 59.256 44.000 0.00 0.00 38.84 1.90
2800 2870 5.420409 ACCTACAGTTTACTCTGCTTATGC 58.580 41.667 0.00 0.00 38.84 3.14
2801 2871 5.187967 ACCTACAGTTTACTCTGCTTATGCT 59.812 40.000 1.96 0.00 38.84 3.79
2802 2872 6.109359 CCTACAGTTTACTCTGCTTATGCTT 58.891 40.000 1.96 0.00 38.84 3.91
2803 2873 6.595716 CCTACAGTTTACTCTGCTTATGCTTT 59.404 38.462 1.96 0.00 38.84 3.51
2804 2874 6.487689 ACAGTTTACTCTGCTTATGCTTTC 57.512 37.500 1.96 0.00 38.84 2.62
2805 2875 5.997746 ACAGTTTACTCTGCTTATGCTTTCA 59.002 36.000 1.96 0.00 38.84 2.69
2806 2876 6.073003 ACAGTTTACTCTGCTTATGCTTTCAC 60.073 38.462 1.96 0.00 38.84 3.18
2807 2877 6.148480 CAGTTTACTCTGCTTATGCTTTCACT 59.852 38.462 1.96 0.00 40.48 3.41
2808 2878 6.712547 AGTTTACTCTGCTTATGCTTTCACTT 59.287 34.615 1.96 0.00 40.48 3.16
2809 2879 7.229506 AGTTTACTCTGCTTATGCTTTCACTTT 59.770 33.333 1.96 0.00 40.48 2.66
2810 2880 7.510549 TTACTCTGCTTATGCTTTCACTTTT 57.489 32.000 1.96 0.00 40.48 2.27
2811 2881 8.615878 TTACTCTGCTTATGCTTTCACTTTTA 57.384 30.769 1.96 0.00 40.48 1.52
2812 2882 7.138692 ACTCTGCTTATGCTTTCACTTTTAG 57.861 36.000 1.96 0.00 40.48 1.85
2814 2884 6.237901 TCTGCTTATGCTTTCACTTTTAGGA 58.762 36.000 1.96 0.00 40.48 2.94
2819 2889 7.575414 TTATGCTTTCACTTTTAGGAACACA 57.425 32.000 0.00 0.00 0.00 3.72
2825 2895 6.783708 TTCACTTTTAGGAACACATTTGGT 57.216 33.333 0.00 0.00 0.00 3.67
2829 2899 5.537295 ACTTTTAGGAACACATTTGGTACCC 59.463 40.000 10.07 0.00 0.00 3.69
2830 2900 4.726035 TTAGGAACACATTTGGTACCCA 57.274 40.909 10.07 0.00 0.00 4.51
2837 2907 7.236640 AGGAACACATTTGGTACCCATATTTTT 59.763 33.333 10.07 0.00 31.53 1.94
2838 2908 7.547722 GGAACACATTTGGTACCCATATTTTTC 59.452 37.037 10.07 5.00 31.53 2.29
2839 2909 7.790782 ACACATTTGGTACCCATATTTTTCT 57.209 32.000 10.07 0.00 31.53 2.52
2840 2910 7.610865 ACACATTTGGTACCCATATTTTTCTG 58.389 34.615 10.07 0.00 31.53 3.02
2841 2911 7.234577 ACACATTTGGTACCCATATTTTTCTGT 59.765 33.333 10.07 0.00 31.53 3.41
2842 2912 8.093927 CACATTTGGTACCCATATTTTTCTGTT 58.906 33.333 10.07 0.00 31.53 3.16
2843 2913 8.655901 ACATTTGGTACCCATATTTTTCTGTTT 58.344 29.630 10.07 0.00 31.53 2.83
2844 2914 8.934825 CATTTGGTACCCATATTTTTCTGTTTG 58.065 33.333 10.07 0.00 31.53 2.93
2845 2915 7.604657 TTGGTACCCATATTTTTCTGTTTGT 57.395 32.000 10.07 0.00 31.53 2.83
2846 2916 7.604657 TGGTACCCATATTTTTCTGTTTGTT 57.395 32.000 10.07 0.00 0.00 2.83
2847 2917 8.707796 TGGTACCCATATTTTTCTGTTTGTTA 57.292 30.769 10.07 0.00 0.00 2.41
2848 2918 9.144298 TGGTACCCATATTTTTCTGTTTGTTAA 57.856 29.630 10.07 0.00 0.00 2.01
2859 2929 9.936759 TTTTTCTGTTTGTTAATTCAAGGAAGT 57.063 25.926 0.00 0.00 0.00 3.01
2860 2930 8.925161 TTTCTGTTTGTTAATTCAAGGAAGTG 57.075 30.769 0.00 0.00 0.00 3.16
2861 2931 7.639113 TCTGTTTGTTAATTCAAGGAAGTGT 57.361 32.000 0.00 0.00 0.00 3.55
2862 2932 8.062065 TCTGTTTGTTAATTCAAGGAAGTGTT 57.938 30.769 0.00 0.00 0.00 3.32
2863 2933 8.188139 TCTGTTTGTTAATTCAAGGAAGTGTTC 58.812 33.333 0.00 0.00 0.00 3.18
2864 2934 7.831753 TGTTTGTTAATTCAAGGAAGTGTTCA 58.168 30.769 0.00 0.00 0.00 3.18
2865 2935 8.474025 TGTTTGTTAATTCAAGGAAGTGTTCAT 58.526 29.630 0.00 0.00 0.00 2.57
2866 2936 9.959749 GTTTGTTAATTCAAGGAAGTGTTCATA 57.040 29.630 0.00 0.00 0.00 2.15
2868 2938 9.567776 TTGTTAATTCAAGGAAGTGTTCATAGA 57.432 29.630 0.00 0.00 0.00 1.98
2869 2939 9.219603 TGTTAATTCAAGGAAGTGTTCATAGAG 57.780 33.333 0.00 0.00 0.00 2.43
2870 2940 9.220767 GTTAATTCAAGGAAGTGTTCATAGAGT 57.779 33.333 0.00 0.00 0.00 3.24
2871 2941 9.793259 TTAATTCAAGGAAGTGTTCATAGAGTT 57.207 29.630 0.00 0.00 0.00 3.01
2872 2942 8.697507 AATTCAAGGAAGTGTTCATAGAGTTT 57.302 30.769 0.00 0.00 0.00 2.66
2873 2943 8.697507 ATTCAAGGAAGTGTTCATAGAGTTTT 57.302 30.769 0.00 0.00 0.00 2.43
2874 2944 7.730364 TCAAGGAAGTGTTCATAGAGTTTTC 57.270 36.000 0.00 0.00 0.00 2.29
2875 2945 7.509546 TCAAGGAAGTGTTCATAGAGTTTTCT 58.490 34.615 0.00 0.00 37.46 2.52
2876 2946 7.657761 TCAAGGAAGTGTTCATAGAGTTTTCTC 59.342 37.037 0.00 0.00 46.50 2.87
2890 2960 6.862944 GAGTTTTCTCATGTCTCGAGTAAG 57.137 41.667 13.13 4.38 45.53 2.34
2891 2961 6.334102 AGTTTTCTCATGTCTCGAGTAAGT 57.666 37.500 13.13 0.00 0.00 2.24
2892 2962 7.450124 AGTTTTCTCATGTCTCGAGTAAGTA 57.550 36.000 13.13 0.00 0.00 2.24
2893 2963 7.531716 AGTTTTCTCATGTCTCGAGTAAGTAG 58.468 38.462 13.13 6.44 0.00 2.57
2894 2964 7.390996 AGTTTTCTCATGTCTCGAGTAAGTAGA 59.609 37.037 13.13 8.64 0.00 2.59
2895 2965 6.912203 TTCTCATGTCTCGAGTAAGTAGAG 57.088 41.667 13.13 12.80 0.00 2.43
2896 2966 5.361427 TCTCATGTCTCGAGTAAGTAGAGG 58.639 45.833 13.13 0.00 33.16 3.69
2897 2967 5.100344 TCATGTCTCGAGTAAGTAGAGGT 57.900 43.478 13.13 0.00 33.16 3.85
2898 2968 4.876679 TCATGTCTCGAGTAAGTAGAGGTG 59.123 45.833 13.13 0.00 33.16 4.00
2899 2969 3.008330 TGTCTCGAGTAAGTAGAGGTGC 58.992 50.000 13.13 0.00 33.16 5.01
2900 2970 3.008330 GTCTCGAGTAAGTAGAGGTGCA 58.992 50.000 13.13 0.00 33.16 4.57
2901 2971 3.064271 GTCTCGAGTAAGTAGAGGTGCAG 59.936 52.174 13.13 0.00 33.16 4.41
2902 2972 3.011119 CTCGAGTAAGTAGAGGTGCAGT 58.989 50.000 3.62 0.00 0.00 4.40
2903 2973 3.418995 TCGAGTAAGTAGAGGTGCAGTT 58.581 45.455 0.00 0.00 0.00 3.16
2904 2974 3.825014 TCGAGTAAGTAGAGGTGCAGTTT 59.175 43.478 0.00 0.00 0.00 2.66
2905 2975 5.005740 TCGAGTAAGTAGAGGTGCAGTTTA 58.994 41.667 0.00 0.00 0.00 2.01
2906 2976 5.094134 CGAGTAAGTAGAGGTGCAGTTTAC 58.906 45.833 0.00 0.00 0.00 2.01
2907 2977 5.402997 AGTAAGTAGAGGTGCAGTTTACC 57.597 43.478 0.00 0.00 38.52 2.85
2908 2978 3.697619 AAGTAGAGGTGCAGTTTACCC 57.302 47.619 0.00 0.00 39.05 3.69
2909 2979 2.616524 AGTAGAGGTGCAGTTTACCCA 58.383 47.619 0.00 0.00 39.05 4.51
2910 2980 3.182152 AGTAGAGGTGCAGTTTACCCAT 58.818 45.455 0.00 0.00 39.05 4.00
2911 2981 4.359105 AGTAGAGGTGCAGTTTACCCATA 58.641 43.478 0.00 0.00 39.05 2.74
2912 2982 4.781087 AGTAGAGGTGCAGTTTACCCATAA 59.219 41.667 0.00 0.00 39.05 1.90
2913 2983 4.862641 AGAGGTGCAGTTTACCCATAAT 57.137 40.909 0.00 0.00 39.05 1.28
2914 2984 4.781934 AGAGGTGCAGTTTACCCATAATC 58.218 43.478 0.00 0.00 39.05 1.75
2915 2985 3.883489 GAGGTGCAGTTTACCCATAATCC 59.117 47.826 0.00 0.00 39.05 3.01
2916 2986 3.268334 AGGTGCAGTTTACCCATAATCCA 59.732 43.478 0.00 0.00 39.05 3.41
2917 2987 4.020543 GGTGCAGTTTACCCATAATCCAA 58.979 43.478 0.00 0.00 31.89 3.53
2918 2988 4.464597 GGTGCAGTTTACCCATAATCCAAA 59.535 41.667 0.00 0.00 31.89 3.28
2919 2989 5.394115 GGTGCAGTTTACCCATAATCCAAAG 60.394 44.000 0.00 0.00 31.89 2.77
2920 2990 5.185056 GTGCAGTTTACCCATAATCCAAAGT 59.815 40.000 0.00 0.00 0.00 2.66
2921 2991 5.777732 TGCAGTTTACCCATAATCCAAAGTT 59.222 36.000 0.00 0.00 0.00 2.66
2922 2992 6.948886 TGCAGTTTACCCATAATCCAAAGTTA 59.051 34.615 0.00 0.00 0.00 2.24
2923 2993 7.122055 TGCAGTTTACCCATAATCCAAAGTTAG 59.878 37.037 0.00 0.00 0.00 2.34
2924 2994 7.416326 GCAGTTTACCCATAATCCAAAGTTAGG 60.416 40.741 0.00 0.00 0.00 2.69
2925 2995 6.605995 AGTTTACCCATAATCCAAAGTTAGGC 59.394 38.462 0.00 0.00 0.00 3.93
2926 2996 4.601406 ACCCATAATCCAAAGTTAGGCA 57.399 40.909 0.00 0.00 0.00 4.75
2927 2997 4.278310 ACCCATAATCCAAAGTTAGGCAC 58.722 43.478 0.00 0.00 0.00 5.01
2928 2998 4.017499 ACCCATAATCCAAAGTTAGGCACT 60.017 41.667 0.00 0.00 46.37 4.40
2929 2999 5.192923 ACCCATAATCCAAAGTTAGGCACTA 59.807 40.000 0.00 0.00 41.75 2.74
2930 3000 6.126185 ACCCATAATCCAAAGTTAGGCACTAT 60.126 38.462 0.00 0.00 42.38 2.12
2931 3001 7.073215 ACCCATAATCCAAAGTTAGGCACTATA 59.927 37.037 0.00 0.00 42.38 1.31
2932 3002 8.109634 CCCATAATCCAAAGTTAGGCACTATAT 58.890 37.037 0.00 0.00 42.38 0.86
2933 3003 9.167311 CCATAATCCAAAGTTAGGCACTATATC 57.833 37.037 0.00 0.00 42.38 1.63
2934 3004 9.725019 CATAATCCAAAGTTAGGCACTATATCA 57.275 33.333 0.00 0.00 42.38 2.15
2937 3007 9.950496 AATCCAAAGTTAGGCACTATATCATAG 57.050 33.333 0.00 0.00 42.38 2.23
2938 3008 8.721133 TCCAAAGTTAGGCACTATATCATAGA 57.279 34.615 0.30 0.00 42.38 1.98
2939 3009 9.154632 TCCAAAGTTAGGCACTATATCATAGAA 57.845 33.333 0.30 0.00 42.38 2.10
2940 3010 9.778741 CCAAAGTTAGGCACTATATCATAGAAA 57.221 33.333 0.30 0.00 42.38 2.52
2956 3026 8.779354 ATCATAGAAATAAATCGAAGGTAGCC 57.221 34.615 0.00 0.00 0.00 3.93
2957 3027 7.732025 TCATAGAAATAAATCGAAGGTAGCCA 58.268 34.615 0.00 0.00 0.00 4.75
2958 3028 8.375506 TCATAGAAATAAATCGAAGGTAGCCAT 58.624 33.333 0.00 0.00 0.00 4.40
2959 3029 6.867662 AGAAATAAATCGAAGGTAGCCATG 57.132 37.500 0.00 0.00 0.00 3.66
2960 3030 5.239525 AGAAATAAATCGAAGGTAGCCATGC 59.760 40.000 0.00 0.00 0.00 4.06
2961 3031 1.680338 AAATCGAAGGTAGCCATGCC 58.320 50.000 0.00 0.00 0.00 4.40
2962 3032 0.546122 AATCGAAGGTAGCCATGCCA 59.454 50.000 0.00 0.00 32.66 4.92
2963 3033 0.767375 ATCGAAGGTAGCCATGCCAT 59.233 50.000 0.00 0.00 32.66 4.40
2964 3034 0.546122 TCGAAGGTAGCCATGCCATT 59.454 50.000 0.00 0.00 32.66 3.16
2965 3035 1.765904 TCGAAGGTAGCCATGCCATTA 59.234 47.619 0.00 0.00 32.66 1.90
2966 3036 2.171659 TCGAAGGTAGCCATGCCATTAA 59.828 45.455 0.00 0.00 32.66 1.40
2967 3037 3.149196 CGAAGGTAGCCATGCCATTAAT 58.851 45.455 0.00 0.00 32.66 1.40
2968 3038 3.569701 CGAAGGTAGCCATGCCATTAATT 59.430 43.478 0.00 0.00 32.66 1.40
2969 3039 4.037923 CGAAGGTAGCCATGCCATTAATTT 59.962 41.667 0.00 0.00 32.66 1.82
2970 3040 5.451798 CGAAGGTAGCCATGCCATTAATTTT 60.452 40.000 0.00 0.00 32.66 1.82
2971 3041 5.280654 AGGTAGCCATGCCATTAATTTTG 57.719 39.130 0.00 0.00 32.66 2.44
2972 3042 4.961730 AGGTAGCCATGCCATTAATTTTGA 59.038 37.500 0.00 0.00 32.66 2.69
2973 3043 5.603813 AGGTAGCCATGCCATTAATTTTGAT 59.396 36.000 0.00 0.00 32.66 2.57
2974 3044 5.928264 GGTAGCCATGCCATTAATTTTGATC 59.072 40.000 0.00 0.00 0.00 2.92
2975 3045 4.964593 AGCCATGCCATTAATTTTGATCC 58.035 39.130 0.00 0.00 0.00 3.36
2976 3046 4.657039 AGCCATGCCATTAATTTTGATCCT 59.343 37.500 0.00 0.00 0.00 3.24
2977 3047 5.840149 AGCCATGCCATTAATTTTGATCCTA 59.160 36.000 0.00 0.00 0.00 2.94
2978 3048 5.928264 GCCATGCCATTAATTTTGATCCTAC 59.072 40.000 0.00 0.00 0.00 3.18
2979 3049 6.462768 GCCATGCCATTAATTTTGATCCTACA 60.463 38.462 0.00 0.00 0.00 2.74
2980 3050 7.499292 CCATGCCATTAATTTTGATCCTACAA 58.501 34.615 0.00 0.00 0.00 2.41
2981 3051 7.986320 CCATGCCATTAATTTTGATCCTACAAA 59.014 33.333 0.00 0.00 37.87 2.83
2982 3052 9.550406 CATGCCATTAATTTTGATCCTACAAAT 57.450 29.630 0.00 0.00 39.09 2.32
2984 3054 9.956640 TGCCATTAATTTTGATCCTACAAATTT 57.043 25.926 0.00 0.00 39.09 1.82
3006 3076 8.879427 ATTTGTATTACCTAAATAGATGGGCC 57.121 34.615 0.00 0.00 30.55 5.80
3007 3077 7.395525 TTGTATTACCTAAATAGATGGGCCA 57.604 36.000 9.61 9.61 30.55 5.36
3008 3078 7.582909 TGTATTACCTAAATAGATGGGCCAT 57.417 36.000 21.39 21.39 30.55 4.40
3009 3079 7.402054 TGTATTACCTAAATAGATGGGCCATG 58.598 38.462 26.77 9.33 30.55 3.66
3010 3080 5.922960 TTACCTAAATAGATGGGCCATGT 57.077 39.130 26.77 23.58 0.00 3.21
3011 3081 4.373156 ACCTAAATAGATGGGCCATGTC 57.627 45.455 26.77 11.97 0.00 3.06
3012 3082 3.074538 ACCTAAATAGATGGGCCATGTCC 59.925 47.826 26.77 9.95 0.00 4.02
3013 3083 3.331889 CCTAAATAGATGGGCCATGTCCT 59.668 47.826 26.77 17.38 0.00 3.85
3014 3084 2.965671 AATAGATGGGCCATGTCCTG 57.034 50.000 26.77 0.00 0.00 3.86
3023 3093 3.254629 CCATGTCCTGGTTCCAGTG 57.745 57.895 16.33 8.66 40.49 3.66
3024 3094 0.322816 CCATGTCCTGGTTCCAGTGG 60.323 60.000 16.33 1.40 40.49 4.00
3025 3095 0.401738 CATGTCCTGGTTCCAGTGGT 59.598 55.000 16.33 0.00 32.56 4.16
3026 3096 1.149101 ATGTCCTGGTTCCAGTGGTT 58.851 50.000 16.33 0.00 32.56 3.67
3027 3097 1.809133 TGTCCTGGTTCCAGTGGTTA 58.191 50.000 16.33 0.00 32.56 2.85
3028 3098 2.344592 TGTCCTGGTTCCAGTGGTTAT 58.655 47.619 16.33 0.00 32.56 1.89
3029 3099 2.714250 TGTCCTGGTTCCAGTGGTTATT 59.286 45.455 16.33 0.00 32.56 1.40
3030 3100 3.081804 GTCCTGGTTCCAGTGGTTATTG 58.918 50.000 16.33 0.00 32.56 1.90
3031 3101 1.818674 CCTGGTTCCAGTGGTTATTGC 59.181 52.381 16.33 0.00 32.56 3.56
3032 3102 2.513753 CTGGTTCCAGTGGTTATTGCA 58.486 47.619 9.54 0.00 0.00 4.08
3033 3103 3.091545 CTGGTTCCAGTGGTTATTGCAT 58.908 45.455 9.54 0.00 0.00 3.96
3034 3104 3.505386 TGGTTCCAGTGGTTATTGCATT 58.495 40.909 9.54 0.00 0.00 3.56
3035 3105 3.900601 TGGTTCCAGTGGTTATTGCATTT 59.099 39.130 9.54 0.00 0.00 2.32
3036 3106 5.080337 TGGTTCCAGTGGTTATTGCATTTA 58.920 37.500 9.54 0.00 0.00 1.40
3037 3107 5.719085 TGGTTCCAGTGGTTATTGCATTTAT 59.281 36.000 9.54 0.00 0.00 1.40
3038 3108 6.042143 GGTTCCAGTGGTTATTGCATTTATG 58.958 40.000 9.54 0.00 0.00 1.90
3054 3124 6.281056 GCATTTATGCGTTAACAAATATGCG 58.719 36.000 6.39 0.00 44.67 4.73
3055 3125 6.075099 GCATTTATGCGTTAACAAATATGCGT 60.075 34.615 6.39 3.86 44.67 5.24
3056 3126 7.112287 GCATTTATGCGTTAACAAATATGCGTA 59.888 33.333 6.39 2.90 44.67 4.42
3057 3127 7.879962 TTTATGCGTTAACAAATATGCGTAC 57.120 32.000 6.39 0.00 0.00 3.67
3058 3128 4.923264 TGCGTTAACAAATATGCGTACA 57.077 36.364 6.39 0.00 0.00 2.90
3059 3129 4.639959 TGCGTTAACAAATATGCGTACAC 58.360 39.130 6.39 0.00 0.00 2.90
3060 3130 4.151867 TGCGTTAACAAATATGCGTACACA 59.848 37.500 6.39 0.00 0.00 3.72
3061 3131 5.163844 TGCGTTAACAAATATGCGTACACAT 60.164 36.000 6.39 1.40 0.00 3.21
3062 3132 6.035758 TGCGTTAACAAATATGCGTACACATA 59.964 34.615 6.07 6.07 36.96 2.29
3063 3133 7.067116 GCGTTAACAAATATGCGTACACATAT 58.933 34.615 10.03 10.03 43.49 1.78
3064 3134 7.057903 GCGTTAACAAATATGCGTACACATATG 59.942 37.037 15.36 9.31 41.35 1.78
3065 3135 8.059502 CGTTAACAAATATGCGTACACATATGT 58.940 33.333 15.36 8.62 41.35 2.29
3066 3136 9.153952 GTTAACAAATATGCGTACACATATGTG 57.846 33.333 29.97 29.97 46.84 3.21
3067 3137 7.546778 AACAAATATGCGTACACATATGTGA 57.453 32.000 36.36 20.00 45.39 3.58
3068 3138 6.943981 ACAAATATGCGTACACATATGTGAC 58.056 36.000 36.36 26.90 45.39 3.67
3069 3139 6.018262 ACAAATATGCGTACACATATGTGACC 60.018 38.462 36.36 24.65 45.39 4.02
3070 3140 6.018343 CAAATATGCGTACACATATGTGACCA 60.018 38.462 36.36 25.53 45.39 4.02
3071 3141 7.987565 CAAATATGCGTACACATATGTGACCAC 60.988 40.741 36.36 27.04 45.39 4.16
3129 3199 8.663209 ACACTATAGAGATGGAATTATGCTCT 57.337 34.615 6.78 0.00 39.17 4.09
3130 3200 9.099071 ACACTATAGAGATGGAATTATGCTCTT 57.901 33.333 6.78 0.00 37.20 2.85
3131 3201 9.585099 CACTATAGAGATGGAATTATGCTCTTC 57.415 37.037 6.78 0.00 37.20 2.87
3132 3202 9.545928 ACTATAGAGATGGAATTATGCTCTTCT 57.454 33.333 6.78 0.00 37.20 2.85
3135 3205 6.897986 AGAGATGGAATTATGCTCTTCTTGT 58.102 36.000 0.00 0.00 32.35 3.16
3136 3206 6.766944 AGAGATGGAATTATGCTCTTCTTGTG 59.233 38.462 0.00 0.00 32.35 3.33
3137 3207 6.421485 AGATGGAATTATGCTCTTCTTGTGT 58.579 36.000 0.00 0.00 0.00 3.72
3138 3208 5.885230 TGGAATTATGCTCTTCTTGTGTG 57.115 39.130 0.00 0.00 0.00 3.82
3139 3209 4.701651 TGGAATTATGCTCTTCTTGTGTGG 59.298 41.667 0.00 0.00 0.00 4.17
3140 3210 4.439289 GGAATTATGCTCTTCTTGTGTGGC 60.439 45.833 0.00 0.00 0.00 5.01
3141 3211 2.113860 TATGCTCTTCTTGTGTGGCC 57.886 50.000 0.00 0.00 0.00 5.36
3142 3212 0.111061 ATGCTCTTCTTGTGTGGCCA 59.889 50.000 0.00 0.00 0.00 5.36
3143 3213 0.819259 TGCTCTTCTTGTGTGGCCAC 60.819 55.000 29.67 29.67 42.19 5.01
3144 3214 0.536006 GCTCTTCTTGTGTGGCCACT 60.536 55.000 34.75 0.00 42.34 4.00
3145 3215 1.233019 CTCTTCTTGTGTGGCCACTG 58.767 55.000 34.75 21.47 42.34 3.66
3146 3216 0.546122 TCTTCTTGTGTGGCCACTGT 59.454 50.000 34.75 0.00 42.34 3.55
3147 3217 0.664761 CTTCTTGTGTGGCCACTGTG 59.335 55.000 34.75 21.47 42.34 3.66
3148 3218 0.034574 TTCTTGTGTGGCCACTGTGT 60.035 50.000 34.75 0.00 42.34 3.72
3149 3219 0.833949 TCTTGTGTGGCCACTGTGTA 59.166 50.000 34.75 13.35 42.34 2.90
3150 3220 0.944386 CTTGTGTGGCCACTGTGTAC 59.056 55.000 34.75 24.27 42.34 2.90
3151 3221 0.253327 TTGTGTGGCCACTGTGTACA 59.747 50.000 34.75 26.49 42.34 2.90
3152 3222 0.462937 TGTGTGGCCACTGTGTACAC 60.463 55.000 34.75 22.92 42.34 2.90
3153 3223 0.462937 GTGTGGCCACTGTGTACACA 60.463 55.000 34.75 26.37 40.84 3.72
3154 3224 0.253327 TGTGGCCACTGTGTACACAA 59.747 50.000 34.75 10.72 41.33 3.33
3155 3225 1.340114 TGTGGCCACTGTGTACACAAA 60.340 47.619 34.75 8.78 41.33 2.83
3156 3226 1.953686 GTGGCCACTGTGTACACAAAT 59.046 47.619 29.12 16.91 41.33 2.32
3157 3227 2.360801 GTGGCCACTGTGTACACAAATT 59.639 45.455 29.12 13.41 41.33 1.82
3158 3228 2.360483 TGGCCACTGTGTACACAAATTG 59.640 45.455 27.66 22.42 41.33 2.32
3159 3229 2.360801 GGCCACTGTGTACACAAATTGT 59.639 45.455 27.66 19.27 41.33 2.71
3160 3230 3.181480 GGCCACTGTGTACACAAATTGTT 60.181 43.478 27.66 7.04 41.33 2.83
3161 3231 3.796178 GCCACTGTGTACACAAATTGTTG 59.204 43.478 27.66 18.22 41.33 3.33
3175 3245 6.446318 ACAAATTGTTGTGACATGTGTATCC 58.554 36.000 1.15 0.00 46.40 2.59
3176 3246 6.265196 ACAAATTGTTGTGACATGTGTATCCT 59.735 34.615 1.15 0.00 46.40 3.24
3177 3247 5.885230 ATTGTTGTGACATGTGTATCCTG 57.115 39.130 1.15 0.00 35.29 3.86
3178 3248 4.350368 TGTTGTGACATGTGTATCCTGT 57.650 40.909 1.15 0.00 0.00 4.00
3179 3249 4.713553 TGTTGTGACATGTGTATCCTGTT 58.286 39.130 1.15 0.00 0.00 3.16
3180 3250 4.754618 TGTTGTGACATGTGTATCCTGTTC 59.245 41.667 1.15 0.00 0.00 3.18
3181 3251 4.890158 TGTGACATGTGTATCCTGTTCT 57.110 40.909 1.15 0.00 0.00 3.01
3182 3252 4.820897 TGTGACATGTGTATCCTGTTCTC 58.179 43.478 1.15 0.00 0.00 2.87
3183 3253 4.283212 TGTGACATGTGTATCCTGTTCTCA 59.717 41.667 1.15 0.00 0.00 3.27
3184 3254 5.046376 TGTGACATGTGTATCCTGTTCTCAT 60.046 40.000 1.15 0.00 0.00 2.90
3185 3255 5.877012 GTGACATGTGTATCCTGTTCTCATT 59.123 40.000 1.15 0.00 0.00 2.57
3186 3256 6.372659 GTGACATGTGTATCCTGTTCTCATTT 59.627 38.462 1.15 0.00 0.00 2.32
3187 3257 6.372381 TGACATGTGTATCCTGTTCTCATTTG 59.628 38.462 1.15 0.00 0.00 2.32
3188 3258 6.240894 ACATGTGTATCCTGTTCTCATTTGT 58.759 36.000 0.00 0.00 0.00 2.83
3189 3259 6.716628 ACATGTGTATCCTGTTCTCATTTGTT 59.283 34.615 0.00 0.00 0.00 2.83
3190 3260 7.231317 ACATGTGTATCCTGTTCTCATTTGTTT 59.769 33.333 0.00 0.00 0.00 2.83
3191 3261 6.969366 TGTGTATCCTGTTCTCATTTGTTTG 58.031 36.000 0.00 0.00 0.00 2.93
3192 3262 6.545666 TGTGTATCCTGTTCTCATTTGTTTGT 59.454 34.615 0.00 0.00 0.00 2.83
3193 3263 7.068103 TGTGTATCCTGTTCTCATTTGTTTGTT 59.932 33.333 0.00 0.00 0.00 2.83
3194 3264 7.920682 GTGTATCCTGTTCTCATTTGTTTGTTT 59.079 33.333 0.00 0.00 0.00 2.83
3195 3265 8.474025 TGTATCCTGTTCTCATTTGTTTGTTTT 58.526 29.630 0.00 0.00 0.00 2.43
3196 3266 9.313118 GTATCCTGTTCTCATTTGTTTGTTTTT 57.687 29.630 0.00 0.00 0.00 1.94
3221 3291 3.619233 CGGGAATGTTCTCGTTTGTTT 57.381 42.857 6.85 0.00 45.69 2.83
3222 3292 3.551551 CGGGAATGTTCTCGTTTGTTTC 58.448 45.455 6.85 0.00 45.69 2.78
3223 3293 3.250040 CGGGAATGTTCTCGTTTGTTTCT 59.750 43.478 6.85 0.00 45.69 2.52
3224 3294 4.449743 CGGGAATGTTCTCGTTTGTTTCTA 59.550 41.667 6.85 0.00 45.69 2.10
3225 3295 5.121768 CGGGAATGTTCTCGTTTGTTTCTAT 59.878 40.000 6.85 0.00 45.69 1.98
3226 3296 6.314784 GGGAATGTTCTCGTTTGTTTCTATG 58.685 40.000 0.00 0.00 0.00 2.23
3227 3297 6.072673 GGGAATGTTCTCGTTTGTTTCTATGT 60.073 38.462 0.00 0.00 0.00 2.29
3228 3298 7.360361 GGAATGTTCTCGTTTGTTTCTATGTT 58.640 34.615 0.00 0.00 0.00 2.71
3229 3299 7.534239 GGAATGTTCTCGTTTGTTTCTATGTTC 59.466 37.037 0.00 0.00 0.00 3.18
3230 3300 6.295039 TGTTCTCGTTTGTTTCTATGTTCC 57.705 37.500 0.00 0.00 0.00 3.62
3231 3301 6.053005 TGTTCTCGTTTGTTTCTATGTTCCT 58.947 36.000 0.00 0.00 0.00 3.36
3232 3302 6.018262 TGTTCTCGTTTGTTTCTATGTTCCTG 60.018 38.462 0.00 0.00 0.00 3.86
3233 3303 5.607477 TCTCGTTTGTTTCTATGTTCCTGT 58.393 37.500 0.00 0.00 0.00 4.00
3234 3304 6.751157 TCTCGTTTGTTTCTATGTTCCTGTA 58.249 36.000 0.00 0.00 0.00 2.74
3235 3305 7.211573 TCTCGTTTGTTTCTATGTTCCTGTAA 58.788 34.615 0.00 0.00 0.00 2.41
3236 3306 7.876068 TCTCGTTTGTTTCTATGTTCCTGTAAT 59.124 33.333 0.00 0.00 0.00 1.89
3237 3307 8.385898 TCGTTTGTTTCTATGTTCCTGTAATT 57.614 30.769 0.00 0.00 0.00 1.40
3238 3308 8.842280 TCGTTTGTTTCTATGTTCCTGTAATTT 58.158 29.630 0.00 0.00 0.00 1.82
3239 3309 9.458374 CGTTTGTTTCTATGTTCCTGTAATTTT 57.542 29.630 0.00 0.00 0.00 1.82
3242 3312 9.959749 TTGTTTCTATGTTCCTGTAATTTTGAC 57.040 29.630 0.00 0.00 0.00 3.18
3243 3313 9.349713 TGTTTCTATGTTCCTGTAATTTTGACT 57.650 29.630 0.00 0.00 0.00 3.41
3246 3316 8.335532 TCTATGTTCCTGTAATTTTGACTTGG 57.664 34.615 0.00 0.00 0.00 3.61
3247 3317 8.160765 TCTATGTTCCTGTAATTTTGACTTGGA 58.839 33.333 0.00 0.00 0.00 3.53
3248 3318 7.781324 ATGTTCCTGTAATTTTGACTTGGAT 57.219 32.000 0.00 0.00 0.00 3.41
3249 3319 6.980593 TGTTCCTGTAATTTTGACTTGGATG 58.019 36.000 0.00 0.00 0.00 3.51
3250 3320 5.643379 TCCTGTAATTTTGACTTGGATGC 57.357 39.130 0.00 0.00 0.00 3.91
3251 3321 5.076182 TCCTGTAATTTTGACTTGGATGCA 58.924 37.500 0.00 0.00 0.00 3.96
3252 3322 5.716228 TCCTGTAATTTTGACTTGGATGCAT 59.284 36.000 0.00 0.00 0.00 3.96
3253 3323 6.211184 TCCTGTAATTTTGACTTGGATGCATT 59.789 34.615 0.00 0.00 0.00 3.56
3254 3324 6.875195 CCTGTAATTTTGACTTGGATGCATTT 59.125 34.615 0.00 0.00 0.00 2.32
3255 3325 8.034215 CCTGTAATTTTGACTTGGATGCATTTA 58.966 33.333 0.00 0.00 0.00 1.40
3256 3326 9.421806 CTGTAATTTTGACTTGGATGCATTTAA 57.578 29.630 0.00 0.00 0.00 1.52
3257 3327 9.941325 TGTAATTTTGACTTGGATGCATTTAAT 57.059 25.926 0.00 0.00 0.00 1.40
3290 3360 9.892130 AGAGATATCCTGACGTTTTATTTTTCT 57.108 29.630 0.00 0.00 0.00 2.52
3297 3367 9.491675 TCCTGACGTTTTATTTTTCTATGTACA 57.508 29.630 0.00 0.00 0.00 2.90
3298 3368 9.755064 CCTGACGTTTTATTTTTCTATGTACAG 57.245 33.333 0.33 0.00 0.00 2.74
3299 3369 9.755064 CTGACGTTTTATTTTTCTATGTACAGG 57.245 33.333 0.33 0.00 0.00 4.00
3300 3370 8.723311 TGACGTTTTATTTTTCTATGTACAGGG 58.277 33.333 0.33 0.00 0.00 4.45
3301 3371 7.532571 ACGTTTTATTTTTCTATGTACAGGGC 58.467 34.615 0.33 0.00 0.00 5.19
3302 3372 6.970613 CGTTTTATTTTTCTATGTACAGGGCC 59.029 38.462 0.33 0.00 0.00 5.80
3303 3373 7.148137 CGTTTTATTTTTCTATGTACAGGGCCT 60.148 37.037 0.00 0.00 0.00 5.19
3304 3374 7.875327 TTTATTTTTCTATGTACAGGGCCTC 57.125 36.000 0.95 0.00 0.00 4.70
3305 3375 4.919774 TTTTTCTATGTACAGGGCCTCA 57.080 40.909 0.95 0.00 0.00 3.86
3306 3376 4.919774 TTTTCTATGTACAGGGCCTCAA 57.080 40.909 0.95 0.00 0.00 3.02
3307 3377 3.906720 TTCTATGTACAGGGCCTCAAC 57.093 47.619 0.95 5.31 0.00 3.18
3308 3378 3.116096 TCTATGTACAGGGCCTCAACT 57.884 47.619 0.95 0.00 0.00 3.16
3309 3379 4.259933 TCTATGTACAGGGCCTCAACTA 57.740 45.455 0.95 0.00 0.00 2.24
3310 3380 4.816126 TCTATGTACAGGGCCTCAACTAT 58.184 43.478 0.95 4.31 0.00 2.12
3311 3381 3.845781 ATGTACAGGGCCTCAACTATG 57.154 47.619 0.95 0.00 0.00 2.23
3312 3382 1.837439 TGTACAGGGCCTCAACTATGG 59.163 52.381 0.95 0.00 0.00 2.74
3313 3383 1.141053 GTACAGGGCCTCAACTATGGG 59.859 57.143 0.95 0.00 0.00 4.00
3314 3384 0.550147 ACAGGGCCTCAACTATGGGT 60.550 55.000 0.95 0.00 0.00 4.51
3315 3385 0.107017 CAGGGCCTCAACTATGGGTG 60.107 60.000 0.95 0.00 0.00 4.61
3316 3386 1.453928 GGGCCTCAACTATGGGTGC 60.454 63.158 0.84 0.00 0.00 5.01
3317 3387 1.453928 GGCCTCAACTATGGGTGCC 60.454 63.158 0.00 0.00 36.59 5.01
3318 3388 1.302949 GCCTCAACTATGGGTGCCA 59.697 57.895 0.00 0.00 38.19 4.92
3319 3389 0.323360 GCCTCAACTATGGGTGCCAA 60.323 55.000 0.00 0.00 36.95 4.52
3320 3390 1.890573 GCCTCAACTATGGGTGCCAAA 60.891 52.381 0.00 0.00 36.95 3.28
3321 3391 2.094675 CCTCAACTATGGGTGCCAAAG 58.905 52.381 0.00 0.00 36.95 2.77
3322 3392 2.555227 CCTCAACTATGGGTGCCAAAGT 60.555 50.000 0.00 0.00 36.95 2.66
3323 3393 2.749621 CTCAACTATGGGTGCCAAAGTC 59.250 50.000 0.00 0.00 36.95 3.01
3324 3394 2.375174 TCAACTATGGGTGCCAAAGTCT 59.625 45.455 0.00 0.00 36.95 3.24
3325 3395 3.157087 CAACTATGGGTGCCAAAGTCTT 58.843 45.455 0.00 0.00 36.95 3.01
3326 3396 2.795329 ACTATGGGTGCCAAAGTCTTG 58.205 47.619 0.00 0.00 36.95 3.02
3342 3412 8.230472 CAAAGTCTTGGAAATATGCTATTCCT 57.770 34.615 6.16 0.00 44.43 3.36
3343 3413 7.814264 AAGTCTTGGAAATATGCTATTCCTG 57.186 36.000 6.16 0.46 44.43 3.86
3344 3414 5.767168 AGTCTTGGAAATATGCTATTCCTGC 59.233 40.000 6.16 0.00 44.43 4.85
3345 3415 5.532406 GTCTTGGAAATATGCTATTCCTGCA 59.468 40.000 6.16 0.00 44.43 4.41
3346 3416 5.532406 TCTTGGAAATATGCTATTCCTGCAC 59.468 40.000 6.16 0.00 44.43 4.57
3347 3417 5.052693 TGGAAATATGCTATTCCTGCACT 57.947 39.130 6.16 0.00 44.43 4.40
3348 3418 5.448654 TGGAAATATGCTATTCCTGCACTT 58.551 37.500 6.16 0.00 44.43 3.16
3349 3419 5.532406 TGGAAATATGCTATTCCTGCACTTC 59.468 40.000 6.16 0.00 44.43 3.01
3350 3420 5.334414 GGAAATATGCTATTCCTGCACTTCG 60.334 44.000 0.00 0.00 43.59 3.79
3351 3421 1.959042 ATGCTATTCCTGCACTTCGG 58.041 50.000 0.00 0.00 43.59 4.30
3352 3422 0.901827 TGCTATTCCTGCACTTCGGA 59.098 50.000 0.00 0.00 35.31 4.55
3353 3423 1.291132 GCTATTCCTGCACTTCGGAC 58.709 55.000 0.00 0.00 0.00 4.79
3354 3424 1.560923 CTATTCCTGCACTTCGGACG 58.439 55.000 0.00 0.00 0.00 4.79
3355 3425 0.459585 TATTCCTGCACTTCGGACGC 60.460 55.000 0.00 0.00 0.00 5.19
3356 3426 4.717629 TCCTGCACTTCGGACGCG 62.718 66.667 3.53 3.53 0.00 6.01
3362 3432 3.367743 ACTTCGGACGCGCCAGTA 61.368 61.111 5.73 0.00 35.94 2.74
3363 3433 2.879462 CTTCGGACGCGCCAGTAC 60.879 66.667 5.73 0.00 35.94 2.73
3364 3434 4.424566 TTCGGACGCGCCAGTACC 62.425 66.667 5.73 0.00 35.94 3.34
3368 3438 4.424566 GACGCGCCAGTACCGGAA 62.425 66.667 9.46 0.00 0.00 4.30
3369 3439 3.919973 GACGCGCCAGTACCGGAAA 62.920 63.158 9.46 0.00 0.00 3.13
3370 3440 2.510691 CGCGCCAGTACCGGAAAT 60.511 61.111 9.46 0.00 0.00 2.17
3371 3441 1.227031 CGCGCCAGTACCGGAAATA 60.227 57.895 9.46 0.00 0.00 1.40
3372 3442 1.213094 CGCGCCAGTACCGGAAATAG 61.213 60.000 9.46 0.00 0.00 1.73
3373 3443 1.496403 GCGCCAGTACCGGAAATAGC 61.496 60.000 9.46 4.24 0.00 2.97
3374 3444 0.104304 CGCCAGTACCGGAAATAGCT 59.896 55.000 9.46 0.00 0.00 3.32
3375 3445 1.338973 CGCCAGTACCGGAAATAGCTA 59.661 52.381 9.46 0.00 0.00 3.32
3376 3446 2.029290 CGCCAGTACCGGAAATAGCTAT 60.029 50.000 9.46 0.00 0.00 2.97
3377 3447 3.554337 CGCCAGTACCGGAAATAGCTATT 60.554 47.826 13.37 13.37 0.00 1.73
3378 3448 4.321452 CGCCAGTACCGGAAATAGCTATTA 60.321 45.833 19.14 0.00 0.00 0.98
3379 3449 5.623824 CGCCAGTACCGGAAATAGCTATTAT 60.624 44.000 19.14 9.67 0.00 1.28
3380 3450 5.581085 GCCAGTACCGGAAATAGCTATTATG 59.419 44.000 19.14 11.48 0.00 1.90
3381 3451 6.698380 CCAGTACCGGAAATAGCTATTATGT 58.302 40.000 19.14 14.83 0.00 2.29
3382 3452 7.578189 GCCAGTACCGGAAATAGCTATTATGTA 60.578 40.741 19.14 13.98 0.00 2.29
3383 3453 8.475639 CCAGTACCGGAAATAGCTATTATGTAT 58.524 37.037 19.14 3.32 0.00 2.29
3384 3454 9.302345 CAGTACCGGAAATAGCTATTATGTATG 57.698 37.037 19.14 8.74 0.00 2.39
3385 3455 9.032624 AGTACCGGAAATAGCTATTATGTATGT 57.967 33.333 19.14 13.34 0.00 2.29
3388 3458 9.817809 ACCGGAAATAGCTATTATGTATGTATG 57.182 33.333 19.14 3.53 0.00 2.39
3389 3459 9.817809 CCGGAAATAGCTATTATGTATGTATGT 57.182 33.333 19.14 0.00 0.00 2.29
3409 3479 9.892130 TGTATGTATGTATGTATGTTTGTGGAA 57.108 29.630 0.00 0.00 0.00 3.53
3413 3483 9.454859 TGTATGTATGTATGTTTGTGGAATTGA 57.545 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 206 2.550180 TCTTCGTCTCAGCATAGATCCG 59.450 50.000 0.00 0.00 0.00 4.18
216 224 5.065731 CACCCATTCTTTCATGCTAGTCTTC 59.934 44.000 0.00 0.00 0.00 2.87
381 389 5.277974 CCATAGCTGGATTAACATTTCCACG 60.278 44.000 0.00 0.00 46.37 4.94
473 481 0.895530 TGACCTCCAAGTTAGCTCGG 59.104 55.000 0.00 0.00 0.00 4.63
524 532 3.238441 CGGTTCTCGTTCTCTTCTCTTG 58.762 50.000 0.00 0.00 0.00 3.02
537 560 5.323105 GTTCTAGTTCTAGAACGGTTCTCG 58.677 45.833 25.51 19.55 44.15 4.04
548 571 9.239002 GTATGTTGCATACTGTTCTAGTTCTAG 57.761 37.037 10.90 0.83 40.89 2.43
549 572 8.745590 TGTATGTTGCATACTGTTCTAGTTCTA 58.254 33.333 16.93 0.00 40.89 2.10
550 573 7.611770 TGTATGTTGCATACTGTTCTAGTTCT 58.388 34.615 16.93 0.00 40.89 3.01
551 574 7.827819 TGTATGTTGCATACTGTTCTAGTTC 57.172 36.000 16.93 0.00 40.89 3.01
552 575 8.040727 TCATGTATGTTGCATACTGTTCTAGTT 58.959 33.333 16.93 0.00 40.89 2.24
553 576 7.555965 TCATGTATGTTGCATACTGTTCTAGT 58.444 34.615 16.93 0.00 43.56 2.57
637 660 2.041620 ACAGCTCCTTTTGATTAGGCCA 59.958 45.455 5.01 0.00 32.59 5.36
672 695 2.167693 TGAAGTGAACAGGTGACGAGTT 59.832 45.455 0.00 0.00 36.41 3.01
688 711 0.036010 CCGCTGAACCCAGATGAAGT 60.036 55.000 0.00 0.00 43.02 3.01
690 713 0.690192 TTCCGCTGAACCCAGATGAA 59.310 50.000 0.00 0.00 43.02 2.57
704 727 0.532115 ATCATGCAAAAGGGTTCCGC 59.468 50.000 0.00 0.00 0.00 5.54
742 765 2.804572 GCAACAGTGTCTGAAGAGCTGA 60.805 50.000 14.92 0.00 35.18 4.26
798 824 4.623167 GCTCGCATATGATTGTACTTCGAT 59.377 41.667 6.97 0.00 0.00 3.59
814 840 1.004080 AGAGTTGCAGTGCTCGCAT 60.004 52.632 17.60 0.00 39.58 4.73
837 863 4.881850 GGTTGAAGTGGAAGTTCTCTCAAA 59.118 41.667 2.25 0.00 46.43 2.69
865 897 6.440647 TCAAGATACCTCAGGTGATGTAAGTT 59.559 38.462 6.61 0.00 36.19 2.66
873 905 4.646945 GTGAGATCAAGATACCTCAGGTGA 59.353 45.833 6.61 0.00 36.19 4.02
895 927 9.178758 GGGAAGATATTTGATAGAACTGTTTGT 57.821 33.333 0.00 0.00 0.00 2.83
913 951 6.073447 TGTGCTTATTTCCTTGGGAAGATA 57.927 37.500 0.00 0.03 43.06 1.98
915 953 4.380843 TGTGCTTATTTCCTTGGGAAGA 57.619 40.909 0.00 0.00 43.06 2.87
966 1004 3.684788 GTCAACCAAGTCTCGTGCAATAT 59.315 43.478 0.00 0.00 0.00 1.28
1021 1059 7.234577 TGTGCATCCATTAGTATATAGGTGACA 59.765 37.037 0.00 0.00 0.00 3.58
1029 1067 8.330993 TCCAATGATGTGCATCCATTAGTATAT 58.669 33.333 9.39 0.00 35.78 0.86
1179 1217 8.608317 GTTACATATTCAAGAGAAGAAAGCTCC 58.392 37.037 0.00 0.00 37.14 4.70
1190 1228 8.549548 CATGCTCTTCAGTTACATATTCAAGAG 58.450 37.037 0.00 0.00 38.84 2.85
1229 1267 7.694093 AGTGAGTTTCTCCTTATTTCCAAGAT 58.306 34.615 0.00 0.00 0.00 2.40
1283 1321 0.168348 CTGGTCCAGTACGTCAGTCG 59.832 60.000 11.09 0.00 46.00 4.18
1284 1322 0.109226 GCTGGTCCAGTACGTCAGTC 60.109 60.000 20.24 0.00 33.43 3.51
1292 1330 2.292257 ACACTCCTATGCTGGTCCAGTA 60.292 50.000 20.24 16.57 33.43 2.74
1339 1377 7.071698 TGAAGATATTCCTAGAAACTCCAGCAT 59.928 37.037 0.00 0.00 0.00 3.79
1340 1378 6.384015 TGAAGATATTCCTAGAAACTCCAGCA 59.616 38.462 0.00 0.00 0.00 4.41
1361 1399 5.368989 GGAAACCAGTACCTCCATATGAAG 58.631 45.833 3.65 0.00 0.00 3.02
1476 1519 6.581171 AGAACTTCAAGAGCCTTAAATTGG 57.419 37.500 0.00 0.00 0.00 3.16
1506 1549 5.065090 GCTCTGCAATTTGTTCAACCTTTTT 59.935 36.000 0.00 0.00 0.00 1.94
1527 1570 6.423302 CAGATGAATTGTGACTACATAGGCTC 59.577 42.308 0.00 0.00 36.53 4.70
1573 1616 6.652062 GCATCCAAATTTTCCAAACTGAGATT 59.348 34.615 0.00 0.00 0.00 2.40
1581 1624 7.052873 TCTCAAAAGCATCCAAATTTTCCAAA 58.947 30.769 0.00 0.00 0.00 3.28
1596 1639 0.677731 CCGCCCATCTCTCAAAAGCA 60.678 55.000 0.00 0.00 0.00 3.91
1597 1640 1.997928 GCCGCCCATCTCTCAAAAGC 61.998 60.000 0.00 0.00 0.00 3.51
1620 1666 6.364945 GGAAATGTTAATTCCTCTCCTTCG 57.635 41.667 0.00 0.00 42.53 3.79
1653 1699 4.685628 GGGCAGTTCACAATTACAACATTG 59.314 41.667 0.00 0.00 39.67 2.82
1667 1713 0.106769 TGTCAGCTTTGGGCAGTTCA 60.107 50.000 0.00 0.00 44.79 3.18
1721 1767 0.979665 AGCCTTGTCTTCTGCTAGCA 59.020 50.000 18.22 18.22 30.97 3.49
1754 1800 7.573710 AGGCATGTAATTGGATCTTAACACTA 58.426 34.615 0.00 0.00 0.00 2.74
1758 1804 8.451908 AGTAAGGCATGTAATTGGATCTTAAC 57.548 34.615 0.00 0.00 0.00 2.01
1769 1815 4.018415 ACCCAGACAAGTAAGGCATGTAAT 60.018 41.667 0.00 0.00 0.00 1.89
1770 1816 3.329520 ACCCAGACAAGTAAGGCATGTAA 59.670 43.478 0.00 0.00 0.00 2.41
1842 1891 5.353678 GGAAAGAGACACTTCATGATCTTGG 59.646 44.000 7.56 0.00 37.69 3.61
1850 1899 4.021104 TCATGACGGAAAGAGACACTTCAT 60.021 41.667 0.00 0.00 37.93 2.57
1868 1917 3.305539 GCTGCAACCAGTCAAATTCATGA 60.306 43.478 0.00 0.00 41.26 3.07
1875 1924 3.260740 CAAAAAGCTGCAACCAGTCAAA 58.739 40.909 1.02 0.00 41.26 2.69
1918 1967 2.930019 CCAGACCCCACCTGCTGA 60.930 66.667 0.00 0.00 0.00 4.26
1925 1974 1.618343 CAAACCATTTCCAGACCCCAC 59.382 52.381 0.00 0.00 0.00 4.61
2000 2049 3.134458 ACCAAGCTTCGAAACTCTTCTG 58.866 45.455 0.75 0.00 0.00 3.02
2029 2078 9.270576 GCTGCAATTTCGAATTATCATACTATG 57.729 33.333 0.00 0.00 0.00 2.23
2040 2089 3.308438 AGCTTGCTGCAATTTCGAATT 57.692 38.095 16.38 0.00 45.94 2.17
2044 2093 4.285292 CCTATTAGCTTGCTGCAATTTCG 58.715 43.478 16.38 5.25 45.94 3.46
2127 2184 4.225042 CCACAACCAGCTATATATAGGGCA 59.775 45.833 19.19 0.00 0.00 5.36
2129 2186 5.030147 TCCCACAACCAGCTATATATAGGG 58.970 45.833 19.19 15.07 0.00 3.53
2130 2187 6.213600 AGTTCCCACAACCAGCTATATATAGG 59.786 42.308 19.19 8.14 0.00 2.57
2179 2236 1.340248 GTTCAGAGTCGTGAGGGACAA 59.660 52.381 0.00 0.00 39.42 3.18
2180 2237 0.959553 GTTCAGAGTCGTGAGGGACA 59.040 55.000 0.00 0.00 39.42 4.02
2181 2238 0.959553 TGTTCAGAGTCGTGAGGGAC 59.040 55.000 0.00 0.00 37.19 4.46
2184 2241 5.410924 TCATAAATGTTCAGAGTCGTGAGG 58.589 41.667 0.00 0.00 0.00 3.86
2212 2269 5.629133 GCCCCAGTATGAACTCAAGATTACA 60.629 44.000 0.00 0.00 39.69 2.41
2216 2273 2.846206 TGCCCCAGTATGAACTCAAGAT 59.154 45.455 0.00 0.00 39.69 2.40
2299 2356 0.817013 TTTTCGGATGCAAGGCCATC 59.183 50.000 5.01 0.00 40.65 3.51
2318 2375 0.833287 AGGCGACTGTTCTGGCATAT 59.167 50.000 0.00 0.00 41.13 1.78
2328 2385 1.407656 TTCTGGGTGAAGGCGACTGT 61.408 55.000 0.00 0.00 42.68 3.55
2334 2391 3.903467 AGGATTAATTCTGGGTGAAGGC 58.097 45.455 0.00 0.00 38.18 4.35
2358 2415 8.977412 TGTATAGTTAAAGACATGAGACATGGA 58.023 33.333 14.70 0.00 0.00 3.41
2386 2443 5.404366 GCACTGAACGAATCTTGTTACAGTA 59.596 40.000 0.00 0.00 36.49 2.74
2406 2463 3.865745 GTGCATCTAACTATGTTCGCACT 59.134 43.478 0.00 0.00 43.84 4.40
2411 2468 5.004821 CGTGTGAGTGCATCTAACTATGTTC 59.995 44.000 0.00 0.00 0.00 3.18
2416 2473 3.756963 AGACGTGTGAGTGCATCTAACTA 59.243 43.478 0.00 0.00 0.00 2.24
2432 2489 5.109210 TGCAATCCTTAATACTCAGACGTG 58.891 41.667 0.00 0.00 0.00 4.49
2460 2517 3.480470 CAAACAATCCAGTGACTCCAGT 58.520 45.455 0.00 0.00 0.00 4.00
2501 2558 9.922305 GTTTGCAGTTCAATATGACTAATCTAC 57.078 33.333 0.00 0.00 34.12 2.59
2504 2561 9.443283 GATGTTTGCAGTTCAATATGACTAATC 57.557 33.333 0.00 0.00 34.12 1.75
2512 2572 4.463539 TGCCAGATGTTTGCAGTTCAATAT 59.536 37.500 0.00 0.00 34.12 1.28
2514 2574 2.629137 TGCCAGATGTTTGCAGTTCAAT 59.371 40.909 0.00 0.00 34.12 2.57
2520 2580 1.816835 ACAGATGCCAGATGTTTGCAG 59.183 47.619 0.00 0.00 38.58 4.41
2544 2604 3.614092 TGAGTAGTTCCCAGTACTACCG 58.386 50.000 0.00 0.00 45.79 4.02
2631 2693 1.899814 AGGCTATGACACCGTCTTTGA 59.100 47.619 0.00 0.00 33.15 2.69
2635 2697 0.108138 GCAAGGCTATGACACCGTCT 60.108 55.000 0.00 0.00 33.15 4.18
2654 2716 3.118702 AGCATCAGACAGATCCTTGAGTG 60.119 47.826 0.00 0.00 33.72 3.51
2722 2784 9.109393 GGCAAGGAAAGAAAAGAAACTAAATTT 57.891 29.630 0.00 0.00 0.00 1.82
2741 2811 2.584835 AGCAACACAATAGGCAAGGA 57.415 45.000 0.00 0.00 0.00 3.36
2766 2836 0.033504 ACTGTAGGTCGCAAGGTGTG 59.966 55.000 0.00 0.00 38.47 3.82
2769 2839 2.631545 AGTAAACTGTAGGTCGCAAGGT 59.368 45.455 0.00 0.00 38.47 3.50
2777 2847 5.187967 AGCATAAGCAGAGTAAACTGTAGGT 59.812 40.000 0.00 0.00 45.49 3.08
2778 2848 5.665459 AGCATAAGCAGAGTAAACTGTAGG 58.335 41.667 0.00 0.00 45.49 3.18
2779 2849 7.331934 TGAAAGCATAAGCAGAGTAAACTGTAG 59.668 37.037 0.00 0.00 45.49 2.74
2780 2850 7.117812 GTGAAAGCATAAGCAGAGTAAACTGTA 59.882 37.037 0.00 0.00 45.49 2.74
2781 2851 5.997746 TGAAAGCATAAGCAGAGTAAACTGT 59.002 36.000 0.00 0.00 45.49 3.55
2782 2852 6.148480 AGTGAAAGCATAAGCAGAGTAAACTG 59.852 38.462 0.00 0.00 45.49 3.16
2783 2853 6.234177 AGTGAAAGCATAAGCAGAGTAAACT 58.766 36.000 0.00 0.00 45.49 2.66
2784 2854 6.487689 AGTGAAAGCATAAGCAGAGTAAAC 57.512 37.500 0.00 0.00 45.49 2.01
2785 2855 7.510549 AAAGTGAAAGCATAAGCAGAGTAAA 57.489 32.000 0.00 0.00 45.49 2.01
2786 2856 7.510549 AAAAGTGAAAGCATAAGCAGAGTAA 57.489 32.000 0.00 0.00 45.49 2.24
2787 2857 7.334421 CCTAAAAGTGAAAGCATAAGCAGAGTA 59.666 37.037 0.00 0.00 45.49 2.59
2788 2858 6.150140 CCTAAAAGTGAAAGCATAAGCAGAGT 59.850 38.462 0.00 0.00 45.49 3.24
2789 2859 6.372659 TCCTAAAAGTGAAAGCATAAGCAGAG 59.627 38.462 0.00 0.00 45.49 3.35
2790 2860 6.237901 TCCTAAAAGTGAAAGCATAAGCAGA 58.762 36.000 0.00 0.00 45.49 4.26
2791 2861 6.500684 TCCTAAAAGTGAAAGCATAAGCAG 57.499 37.500 0.00 0.00 45.49 4.24
2792 2862 6.264292 TGTTCCTAAAAGTGAAAGCATAAGCA 59.736 34.615 0.00 0.00 45.49 3.91
2793 2863 6.582672 GTGTTCCTAAAAGTGAAAGCATAAGC 59.417 38.462 0.00 0.00 42.56 3.09
2794 2864 7.648142 TGTGTTCCTAAAAGTGAAAGCATAAG 58.352 34.615 0.00 0.00 0.00 1.73
2795 2865 7.575414 TGTGTTCCTAAAAGTGAAAGCATAA 57.425 32.000 0.00 0.00 0.00 1.90
2796 2866 7.759489 ATGTGTTCCTAAAAGTGAAAGCATA 57.241 32.000 0.00 0.00 0.00 3.14
2797 2867 6.655078 ATGTGTTCCTAAAAGTGAAAGCAT 57.345 33.333 0.00 0.00 0.00 3.79
2798 2868 6.463995 AATGTGTTCCTAAAAGTGAAAGCA 57.536 33.333 0.00 0.00 0.00 3.91
2799 2869 6.200854 CCAAATGTGTTCCTAAAAGTGAAAGC 59.799 38.462 0.00 0.00 0.00 3.51
2800 2870 7.264947 ACCAAATGTGTTCCTAAAAGTGAAAG 58.735 34.615 0.00 0.00 0.00 2.62
2801 2871 7.176589 ACCAAATGTGTTCCTAAAAGTGAAA 57.823 32.000 0.00 0.00 0.00 2.69
2802 2872 6.783708 ACCAAATGTGTTCCTAAAAGTGAA 57.216 33.333 0.00 0.00 0.00 3.18
2803 2873 6.263617 GGTACCAAATGTGTTCCTAAAAGTGA 59.736 38.462 7.15 0.00 0.00 3.41
2804 2874 6.443792 GGTACCAAATGTGTTCCTAAAAGTG 58.556 40.000 7.15 0.00 0.00 3.16
2805 2875 6.644248 GGTACCAAATGTGTTCCTAAAAGT 57.356 37.500 7.15 0.00 0.00 2.66
2837 2907 7.639113 ACACTTCCTTGAATTAACAAACAGA 57.361 32.000 0.00 0.00 0.00 3.41
2838 2908 7.973388 TGAACACTTCCTTGAATTAACAAACAG 59.027 33.333 0.00 0.00 0.00 3.16
2839 2909 7.831753 TGAACACTTCCTTGAATTAACAAACA 58.168 30.769 0.00 0.00 0.00 2.83
2840 2910 8.871686 ATGAACACTTCCTTGAATTAACAAAC 57.128 30.769 0.00 0.00 0.00 2.93
2842 2912 9.567776 TCTATGAACACTTCCTTGAATTAACAA 57.432 29.630 0.00 0.00 0.00 2.83
2843 2913 9.219603 CTCTATGAACACTTCCTTGAATTAACA 57.780 33.333 0.00 0.00 0.00 2.41
2844 2914 9.220767 ACTCTATGAACACTTCCTTGAATTAAC 57.779 33.333 0.00 0.00 0.00 2.01
2845 2915 9.793259 AACTCTATGAACACTTCCTTGAATTAA 57.207 29.630 0.00 0.00 0.00 1.40
2846 2916 9.793259 AAACTCTATGAACACTTCCTTGAATTA 57.207 29.630 0.00 0.00 0.00 1.40
2847 2917 8.697507 AAACTCTATGAACACTTCCTTGAATT 57.302 30.769 0.00 0.00 0.00 2.17
2848 2918 8.697507 AAAACTCTATGAACACTTCCTTGAAT 57.302 30.769 0.00 0.00 0.00 2.57
2849 2919 7.993183 AGAAAACTCTATGAACACTTCCTTGAA 59.007 33.333 0.00 0.00 0.00 2.69
2850 2920 7.509546 AGAAAACTCTATGAACACTTCCTTGA 58.490 34.615 0.00 0.00 0.00 3.02
2851 2921 7.442364 TGAGAAAACTCTATGAACACTTCCTTG 59.558 37.037 0.00 0.00 0.00 3.61
2852 2922 7.509546 TGAGAAAACTCTATGAACACTTCCTT 58.490 34.615 0.00 0.00 0.00 3.36
2853 2923 7.067496 TGAGAAAACTCTATGAACACTTCCT 57.933 36.000 0.00 0.00 0.00 3.36
2854 2924 7.389053 ACATGAGAAAACTCTATGAACACTTCC 59.611 37.037 0.00 0.00 0.00 3.46
2855 2925 8.316640 ACATGAGAAAACTCTATGAACACTTC 57.683 34.615 0.00 0.00 0.00 3.01
2856 2926 8.153550 AGACATGAGAAAACTCTATGAACACTT 58.846 33.333 0.00 0.00 0.00 3.16
2857 2927 7.675062 AGACATGAGAAAACTCTATGAACACT 58.325 34.615 0.00 0.00 0.00 3.55
2858 2928 7.201393 CGAGACATGAGAAAACTCTATGAACAC 60.201 40.741 0.00 0.00 0.00 3.32
2859 2929 6.808704 CGAGACATGAGAAAACTCTATGAACA 59.191 38.462 0.00 0.00 0.00 3.18
2860 2930 7.030165 TCGAGACATGAGAAAACTCTATGAAC 58.970 38.462 0.00 0.00 0.00 3.18
2861 2931 7.094162 ACTCGAGACATGAGAAAACTCTATGAA 60.094 37.037 21.68 0.00 36.93 2.57
2862 2932 6.375736 ACTCGAGACATGAGAAAACTCTATGA 59.624 38.462 21.68 0.00 36.93 2.15
2863 2933 6.559810 ACTCGAGACATGAGAAAACTCTATG 58.440 40.000 21.68 0.00 36.93 2.23
2864 2934 6.767524 ACTCGAGACATGAGAAAACTCTAT 57.232 37.500 21.68 0.00 36.93 1.98
2865 2935 7.390996 ACTTACTCGAGACATGAGAAAACTCTA 59.609 37.037 21.68 0.00 36.93 2.43
2866 2936 6.207810 ACTTACTCGAGACATGAGAAAACTCT 59.792 38.462 21.68 0.00 36.93 3.24
2867 2937 6.383415 ACTTACTCGAGACATGAGAAAACTC 58.617 40.000 21.68 0.00 36.93 3.01
2868 2938 6.334102 ACTTACTCGAGACATGAGAAAACT 57.666 37.500 21.68 0.00 36.93 2.66
2869 2939 7.528307 TCTACTTACTCGAGACATGAGAAAAC 58.472 38.462 21.68 0.00 36.93 2.43
2870 2940 7.148222 CCTCTACTTACTCGAGACATGAGAAAA 60.148 40.741 21.68 0.00 36.93 2.29
2871 2941 6.316640 CCTCTACTTACTCGAGACATGAGAAA 59.683 42.308 21.68 0.00 36.93 2.52
2872 2942 5.818336 CCTCTACTTACTCGAGACATGAGAA 59.182 44.000 21.68 0.60 36.93 2.87
2873 2943 5.104859 ACCTCTACTTACTCGAGACATGAGA 60.105 44.000 21.68 14.00 36.93 3.27
2874 2944 5.007234 CACCTCTACTTACTCGAGACATGAG 59.993 48.000 21.68 16.29 39.40 2.90
2875 2945 4.876679 CACCTCTACTTACTCGAGACATGA 59.123 45.833 21.68 8.23 0.00 3.07
2876 2946 4.496673 GCACCTCTACTTACTCGAGACATG 60.497 50.000 21.68 10.78 0.00 3.21
2877 2947 3.628487 GCACCTCTACTTACTCGAGACAT 59.372 47.826 21.68 0.00 0.00 3.06
2878 2948 3.008330 GCACCTCTACTTACTCGAGACA 58.992 50.000 21.68 3.07 0.00 3.41
2879 2949 3.008330 TGCACCTCTACTTACTCGAGAC 58.992 50.000 21.68 0.00 0.00 3.36
2880 2950 3.271729 CTGCACCTCTACTTACTCGAGA 58.728 50.000 21.68 0.00 0.00 4.04
2881 2951 3.011119 ACTGCACCTCTACTTACTCGAG 58.989 50.000 11.84 11.84 0.00 4.04
2882 2952 3.069079 ACTGCACCTCTACTTACTCGA 57.931 47.619 0.00 0.00 0.00 4.04
2883 2953 3.851976 AACTGCACCTCTACTTACTCG 57.148 47.619 0.00 0.00 0.00 4.18
2884 2954 5.409211 GGTAAACTGCACCTCTACTTACTC 58.591 45.833 0.00 0.00 32.98 2.59
2885 2955 4.222366 GGGTAAACTGCACCTCTACTTACT 59.778 45.833 0.00 0.00 36.25 2.24
2886 2956 4.020839 TGGGTAAACTGCACCTCTACTTAC 60.021 45.833 0.00 0.00 36.25 2.34
2887 2957 4.161876 TGGGTAAACTGCACCTCTACTTA 58.838 43.478 0.00 0.00 36.25 2.24
2888 2958 2.976882 TGGGTAAACTGCACCTCTACTT 59.023 45.455 0.00 0.00 36.25 2.24
2889 2959 2.616524 TGGGTAAACTGCACCTCTACT 58.383 47.619 0.00 0.00 36.25 2.57
2890 2960 3.629142 ATGGGTAAACTGCACCTCTAC 57.371 47.619 0.00 0.00 36.25 2.59
2891 2961 5.163237 GGATTATGGGTAAACTGCACCTCTA 60.163 44.000 0.00 0.00 36.25 2.43
2892 2962 4.385310 GGATTATGGGTAAACTGCACCTCT 60.385 45.833 0.00 0.00 36.25 3.69
2893 2963 3.883489 GGATTATGGGTAAACTGCACCTC 59.117 47.826 0.00 0.00 36.25 3.85
2894 2964 3.268334 TGGATTATGGGTAAACTGCACCT 59.732 43.478 0.00 0.00 36.25 4.00
2895 2965 3.626930 TGGATTATGGGTAAACTGCACC 58.373 45.455 0.00 0.00 35.15 5.01
2896 2966 5.185056 ACTTTGGATTATGGGTAAACTGCAC 59.815 40.000 0.00 0.00 0.00 4.57
2897 2967 5.329399 ACTTTGGATTATGGGTAAACTGCA 58.671 37.500 0.00 0.00 0.00 4.41
2898 2968 5.914898 ACTTTGGATTATGGGTAAACTGC 57.085 39.130 0.00 0.00 0.00 4.40
2899 2969 7.416326 GCCTAACTTTGGATTATGGGTAAACTG 60.416 40.741 0.00 0.00 0.00 3.16
2900 2970 6.605995 GCCTAACTTTGGATTATGGGTAAACT 59.394 38.462 0.00 0.00 0.00 2.66
2901 2971 6.378848 TGCCTAACTTTGGATTATGGGTAAAC 59.621 38.462 0.00 0.00 0.00 2.01
2902 2972 6.378848 GTGCCTAACTTTGGATTATGGGTAAA 59.621 38.462 0.00 0.00 0.00 2.01
2903 2973 5.889289 GTGCCTAACTTTGGATTATGGGTAA 59.111 40.000 0.00 0.00 0.00 2.85
2904 2974 5.192923 AGTGCCTAACTTTGGATTATGGGTA 59.807 40.000 0.00 0.00 34.57 3.69
2905 2975 4.017499 AGTGCCTAACTTTGGATTATGGGT 60.017 41.667 0.00 0.00 34.57 4.51
2906 2976 4.536765 AGTGCCTAACTTTGGATTATGGG 58.463 43.478 0.00 0.00 34.57 4.00
2907 2977 9.167311 GATATAGTGCCTAACTTTGGATTATGG 57.833 37.037 0.00 0.00 40.56 2.74
2908 2978 9.725019 TGATATAGTGCCTAACTTTGGATTATG 57.275 33.333 0.00 0.00 40.56 1.90
2911 2981 9.950496 CTATGATATAGTGCCTAACTTTGGATT 57.050 33.333 0.00 0.00 40.56 3.01
2912 2982 9.326489 TCTATGATATAGTGCCTAACTTTGGAT 57.674 33.333 0.00 0.00 40.56 3.41
2913 2983 8.721133 TCTATGATATAGTGCCTAACTTTGGA 57.279 34.615 0.00 0.00 40.56 3.53
2914 2984 9.778741 TTTCTATGATATAGTGCCTAACTTTGG 57.221 33.333 0.00 0.00 40.56 3.28
2930 3000 9.871238 GGCTACCTTCGATTTATTTCTATGATA 57.129 33.333 0.00 0.00 0.00 2.15
2931 3001 8.375506 TGGCTACCTTCGATTTATTTCTATGAT 58.624 33.333 0.00 0.00 0.00 2.45
2932 3002 7.732025 TGGCTACCTTCGATTTATTTCTATGA 58.268 34.615 0.00 0.00 0.00 2.15
2933 3003 7.962964 TGGCTACCTTCGATTTATTTCTATG 57.037 36.000 0.00 0.00 0.00 2.23
2934 3004 7.119846 GCATGGCTACCTTCGATTTATTTCTAT 59.880 37.037 0.00 0.00 0.00 1.98
2935 3005 6.426937 GCATGGCTACCTTCGATTTATTTCTA 59.573 38.462 0.00 0.00 0.00 2.10
2936 3006 5.239525 GCATGGCTACCTTCGATTTATTTCT 59.760 40.000 0.00 0.00 0.00 2.52
2937 3007 5.452777 GCATGGCTACCTTCGATTTATTTC 58.547 41.667 0.00 0.00 0.00 2.17
2938 3008 4.278419 GGCATGGCTACCTTCGATTTATTT 59.722 41.667 12.86 0.00 0.00 1.40
2939 3009 3.821033 GGCATGGCTACCTTCGATTTATT 59.179 43.478 12.86 0.00 0.00 1.40
2940 3010 3.181445 TGGCATGGCTACCTTCGATTTAT 60.181 43.478 21.08 0.00 0.00 1.40
2941 3011 2.171659 TGGCATGGCTACCTTCGATTTA 59.828 45.455 21.08 0.00 0.00 1.40
2942 3012 1.064758 TGGCATGGCTACCTTCGATTT 60.065 47.619 21.08 0.00 0.00 2.17
2943 3013 0.546122 TGGCATGGCTACCTTCGATT 59.454 50.000 21.08 0.00 0.00 3.34
2944 3014 0.767375 ATGGCATGGCTACCTTCGAT 59.233 50.000 21.08 0.00 0.00 3.59
2945 3015 0.546122 AATGGCATGGCTACCTTCGA 59.454 50.000 21.08 0.00 0.00 3.71
2946 3016 2.254546 TAATGGCATGGCTACCTTCG 57.745 50.000 21.08 0.00 0.00 3.79
2947 3017 5.535753 AAATTAATGGCATGGCTACCTTC 57.464 39.130 21.08 0.00 0.00 3.46
2948 3018 5.424895 TCAAAATTAATGGCATGGCTACCTT 59.575 36.000 21.08 10.76 0.00 3.50
2949 3019 4.961730 TCAAAATTAATGGCATGGCTACCT 59.038 37.500 21.08 4.66 0.00 3.08
2950 3020 5.275067 TCAAAATTAATGGCATGGCTACC 57.725 39.130 21.08 0.00 0.00 3.18
2951 3021 5.928264 GGATCAAAATTAATGGCATGGCTAC 59.072 40.000 21.08 0.00 0.00 3.58
2952 3022 5.840149 AGGATCAAAATTAATGGCATGGCTA 59.160 36.000 21.08 7.33 0.00 3.93
2953 3023 4.657039 AGGATCAAAATTAATGGCATGGCT 59.343 37.500 21.08 3.30 0.00 4.75
2954 3024 4.964593 AGGATCAAAATTAATGGCATGGC 58.035 39.130 13.29 13.29 0.00 4.40
2955 3025 7.053316 TGTAGGATCAAAATTAATGGCATGG 57.947 36.000 0.00 0.00 0.00 3.66
2956 3026 8.945481 TTTGTAGGATCAAAATTAATGGCATG 57.055 30.769 0.00 0.00 34.90 4.06
2958 3028 9.956640 AAATTTGTAGGATCAAAATTAATGGCA 57.043 25.926 0.00 0.00 40.05 4.92
2980 3050 9.309224 GGCCCATCTATTTAGGTAATACAAATT 57.691 33.333 0.00 0.00 0.00 1.82
2981 3051 8.452868 TGGCCCATCTATTTAGGTAATACAAAT 58.547 33.333 0.00 0.00 0.00 2.32
2982 3052 7.817440 TGGCCCATCTATTTAGGTAATACAAA 58.183 34.615 0.00 0.00 0.00 2.83
2983 3053 7.395525 TGGCCCATCTATTTAGGTAATACAA 57.604 36.000 0.00 0.00 0.00 2.41
2984 3054 7.018149 ACATGGCCCATCTATTTAGGTAATACA 59.982 37.037 0.00 0.00 0.00 2.29
2985 3055 7.402862 ACATGGCCCATCTATTTAGGTAATAC 58.597 38.462 0.00 0.00 0.00 1.89
2986 3056 7.311675 GGACATGGCCCATCTATTTAGGTAATA 60.312 40.741 6.20 0.00 0.00 0.98
2987 3057 6.468972 ACATGGCCCATCTATTTAGGTAAT 57.531 37.500 0.00 0.00 0.00 1.89
2988 3058 5.222048 GGACATGGCCCATCTATTTAGGTAA 60.222 44.000 6.20 0.00 0.00 2.85
2989 3059 4.288626 GGACATGGCCCATCTATTTAGGTA 59.711 45.833 6.20 0.00 0.00 3.08
2990 3060 3.074538 GGACATGGCCCATCTATTTAGGT 59.925 47.826 6.20 0.00 0.00 3.08
2991 3061 3.331889 AGGACATGGCCCATCTATTTAGG 59.668 47.826 16.13 0.00 0.00 2.69
2992 3062 4.330250 CAGGACATGGCCCATCTATTTAG 58.670 47.826 16.13 0.00 0.00 1.85
2993 3063 3.074390 CCAGGACATGGCCCATCTATTTA 59.926 47.826 16.13 0.00 43.83 1.40
2994 3064 2.158415 CCAGGACATGGCCCATCTATTT 60.158 50.000 16.13 0.00 43.83 1.40
2995 3065 1.426598 CCAGGACATGGCCCATCTATT 59.573 52.381 16.13 0.00 43.83 1.73
2996 3066 1.070604 CCAGGACATGGCCCATCTAT 58.929 55.000 16.13 0.00 43.83 1.98
2997 3067 2.543569 CCAGGACATGGCCCATCTA 58.456 57.895 16.13 0.00 43.83 1.98
2998 3068 3.339042 CCAGGACATGGCCCATCT 58.661 61.111 16.13 0.00 43.83 2.90
3013 3083 2.666272 TGCAATAACCACTGGAACCA 57.334 45.000 0.71 0.00 0.00 3.67
3014 3084 4.535526 AAATGCAATAACCACTGGAACC 57.464 40.909 0.71 0.00 0.00 3.62
3031 3101 7.375230 ACGCATATTTGTTAACGCATAAATG 57.625 32.000 10.37 6.53 0.00 2.32
3032 3102 8.123575 TGTACGCATATTTGTTAACGCATAAAT 58.876 29.630 0.26 4.27 0.00 1.40
3033 3103 7.425882 GTGTACGCATATTTGTTAACGCATAAA 59.574 33.333 0.39 0.00 0.00 1.40
3034 3104 6.900828 GTGTACGCATATTTGTTAACGCATAA 59.099 34.615 0.39 0.00 0.00 1.90
3035 3105 6.035758 TGTGTACGCATATTTGTTAACGCATA 59.964 34.615 4.65 0.33 0.00 3.14
3036 3106 5.163844 TGTGTACGCATATTTGTTAACGCAT 60.164 36.000 4.65 0.00 0.00 4.73
3037 3107 4.151867 TGTGTACGCATATTTGTTAACGCA 59.848 37.500 4.65 0.00 0.00 5.24
3038 3108 4.639959 TGTGTACGCATATTTGTTAACGC 58.360 39.130 4.65 0.00 0.00 4.84
3039 3109 8.059502 ACATATGTGTACGCATATTTGTTAACG 58.940 33.333 30.43 21.21 39.31 3.18
3040 3110 9.153952 CACATATGTGTACGCATATTTGTTAAC 57.846 33.333 30.28 0.00 39.31 2.01
3041 3111 9.099454 TCACATATGTGTACGCATATTTGTTAA 57.901 29.630 33.52 22.36 45.76 2.01
3042 3112 8.544597 GTCACATATGTGTACGCATATTTGTTA 58.455 33.333 33.52 23.09 45.76 2.41
3043 3113 7.406553 GTCACATATGTGTACGCATATTTGTT 58.593 34.615 33.52 20.40 45.76 2.83
3044 3114 6.018262 GGTCACATATGTGTACGCATATTTGT 60.018 38.462 33.52 28.09 45.76 2.83
3045 3115 6.018343 TGGTCACATATGTGTACGCATATTTG 60.018 38.462 31.61 31.61 45.76 2.32
3046 3116 6.018262 GTGGTCACATATGTGTACGCATATTT 60.018 38.462 30.43 24.32 45.76 1.40
3047 3117 5.465390 GTGGTCACATATGTGTACGCATATT 59.535 40.000 30.43 21.22 45.76 1.28
3048 3118 4.988540 GTGGTCACATATGTGTACGCATAT 59.011 41.667 28.33 28.33 45.76 1.78
3049 3119 4.142138 TGTGGTCACATATGTGTACGCATA 60.142 41.667 30.03 26.70 45.76 3.14
3050 3120 3.194861 GTGGTCACATATGTGTACGCAT 58.805 45.455 30.03 24.28 45.76 4.73
3051 3121 2.028930 TGTGGTCACATATGTGTACGCA 60.029 45.455 30.03 28.92 45.76 5.24
3052 3122 2.612604 TGTGGTCACATATGTGTACGC 58.387 47.619 30.03 27.23 45.76 4.42
3103 3173 9.760926 AGAGCATAATTCCATCTCTATAGTGTA 57.239 33.333 0.00 0.00 32.86 2.90
3104 3174 8.663209 AGAGCATAATTCCATCTCTATAGTGT 57.337 34.615 0.00 0.00 32.86 3.55
3105 3175 9.585099 GAAGAGCATAATTCCATCTCTATAGTG 57.415 37.037 0.00 0.00 34.10 2.74
3106 3176 9.545928 AGAAGAGCATAATTCCATCTCTATAGT 57.454 33.333 0.00 0.00 34.10 2.12
3109 3179 8.658619 ACAAGAAGAGCATAATTCCATCTCTAT 58.341 33.333 0.00 0.00 34.10 1.98
3110 3180 7.930325 CACAAGAAGAGCATAATTCCATCTCTA 59.070 37.037 0.00 0.00 34.10 2.43
3111 3181 6.766944 CACAAGAAGAGCATAATTCCATCTCT 59.233 38.462 0.00 0.00 35.82 3.10
3112 3182 6.541641 ACACAAGAAGAGCATAATTCCATCTC 59.458 38.462 0.00 0.00 0.00 2.75
3113 3183 6.318144 CACACAAGAAGAGCATAATTCCATCT 59.682 38.462 0.00 0.00 0.00 2.90
3114 3184 6.459298 CCACACAAGAAGAGCATAATTCCATC 60.459 42.308 0.00 0.00 0.00 3.51
3115 3185 5.359009 CCACACAAGAAGAGCATAATTCCAT 59.641 40.000 0.00 0.00 0.00 3.41
3116 3186 4.701651 CCACACAAGAAGAGCATAATTCCA 59.298 41.667 0.00 0.00 0.00 3.53
3117 3187 4.439289 GCCACACAAGAAGAGCATAATTCC 60.439 45.833 0.00 0.00 0.00 3.01
3118 3188 4.439289 GGCCACACAAGAAGAGCATAATTC 60.439 45.833 0.00 0.00 0.00 2.17
3119 3189 3.445096 GGCCACACAAGAAGAGCATAATT 59.555 43.478 0.00 0.00 0.00 1.40
3120 3190 3.019564 GGCCACACAAGAAGAGCATAAT 58.980 45.455 0.00 0.00 0.00 1.28
3121 3191 2.224744 TGGCCACACAAGAAGAGCATAA 60.225 45.455 0.00 0.00 0.00 1.90
3122 3192 1.350684 TGGCCACACAAGAAGAGCATA 59.649 47.619 0.00 0.00 0.00 3.14
3123 3193 0.111061 TGGCCACACAAGAAGAGCAT 59.889 50.000 0.00 0.00 0.00 3.79
3124 3194 0.819259 GTGGCCACACAAGAAGAGCA 60.819 55.000 31.23 0.00 46.90 4.26
3125 3195 1.952263 GTGGCCACACAAGAAGAGC 59.048 57.895 31.23 0.00 46.90 4.09
3135 3205 0.253327 TTGTGTACACAGTGGCCACA 59.747 50.000 36.39 18.57 42.94 4.17
3136 3206 1.384525 TTTGTGTACACAGTGGCCAC 58.615 50.000 29.22 29.22 42.94 5.01
3137 3207 2.356665 ATTTGTGTACACAGTGGCCA 57.643 45.000 26.52 0.00 42.94 5.36
3138 3208 2.360801 ACAATTTGTGTACACAGTGGCC 59.639 45.455 26.52 0.00 42.94 5.36
3139 3209 3.708563 ACAATTTGTGTACACAGTGGC 57.291 42.857 26.52 0.17 42.94 5.01
3140 3210 4.992688 ACAACAATTTGTGTACACAGTGG 58.007 39.130 26.52 20.37 44.66 4.00
3151 3221 6.265196 AGGATACACATGTCACAACAATTTGT 59.735 34.615 0.00 0.00 43.57 2.83
3152 3222 6.583427 CAGGATACACATGTCACAACAATTTG 59.417 38.462 0.00 0.00 37.92 2.32
3153 3223 6.265196 ACAGGATACACATGTCACAACAATTT 59.735 34.615 0.00 0.00 39.37 1.82
3154 3224 5.769662 ACAGGATACACATGTCACAACAATT 59.230 36.000 0.00 0.00 39.37 2.32
3155 3225 5.316167 ACAGGATACACATGTCACAACAAT 58.684 37.500 0.00 0.00 39.37 2.71
3156 3226 4.713553 ACAGGATACACATGTCACAACAA 58.286 39.130 0.00 0.00 39.37 2.83
3157 3227 4.350368 ACAGGATACACATGTCACAACA 57.650 40.909 0.00 0.00 39.37 3.33
3158 3228 4.997395 AGAACAGGATACACATGTCACAAC 59.003 41.667 0.00 0.00 42.83 3.32
3159 3229 5.221621 TGAGAACAGGATACACATGTCACAA 60.222 40.000 0.00 0.00 42.83 3.33
3160 3230 4.283212 TGAGAACAGGATACACATGTCACA 59.717 41.667 0.00 0.00 42.83 3.58
3161 3231 4.820897 TGAGAACAGGATACACATGTCAC 58.179 43.478 0.00 0.00 42.83 3.67
3162 3232 5.682234 ATGAGAACAGGATACACATGTCA 57.318 39.130 0.00 0.00 42.83 3.58
3163 3233 6.372659 ACAAATGAGAACAGGATACACATGTC 59.627 38.462 0.00 0.00 42.83 3.06
3164 3234 6.240894 ACAAATGAGAACAGGATACACATGT 58.759 36.000 0.00 0.00 45.64 3.21
3165 3235 6.748333 ACAAATGAGAACAGGATACACATG 57.252 37.500 0.00 0.00 41.41 3.21
3166 3236 7.231317 ACAAACAAATGAGAACAGGATACACAT 59.769 33.333 0.00 0.00 41.41 3.21
3167 3237 6.545666 ACAAACAAATGAGAACAGGATACACA 59.454 34.615 0.00 0.00 41.41 3.72
3168 3238 6.970484 ACAAACAAATGAGAACAGGATACAC 58.030 36.000 0.00 0.00 41.41 2.90
3169 3239 7.581213 AACAAACAAATGAGAACAGGATACA 57.419 32.000 0.00 0.00 41.41 2.29
3170 3240 8.871686 AAAACAAACAAATGAGAACAGGATAC 57.128 30.769 0.00 0.00 0.00 2.24
3195 3265 1.950909 ACGAGAACATTCCCGCAAAAA 59.049 42.857 0.00 0.00 31.11 1.94
3196 3266 1.600023 ACGAGAACATTCCCGCAAAA 58.400 45.000 0.00 0.00 31.11 2.44
3197 3267 1.600023 AACGAGAACATTCCCGCAAA 58.400 45.000 0.00 0.00 31.11 3.68
3198 3268 1.265635 CAAACGAGAACATTCCCGCAA 59.734 47.619 0.00 0.00 31.11 4.85
3199 3269 0.871722 CAAACGAGAACATTCCCGCA 59.128 50.000 0.00 0.00 31.11 5.69
3200 3270 0.872388 ACAAACGAGAACATTCCCGC 59.128 50.000 0.00 0.00 31.11 6.13
3201 3271 3.250040 AGAAACAAACGAGAACATTCCCG 59.750 43.478 0.00 0.00 34.40 5.14
3202 3272 4.830826 AGAAACAAACGAGAACATTCCC 57.169 40.909 0.00 0.00 0.00 3.97
3203 3273 6.899114 ACATAGAAACAAACGAGAACATTCC 58.101 36.000 0.00 0.00 0.00 3.01
3204 3274 7.534239 GGAACATAGAAACAAACGAGAACATTC 59.466 37.037 0.00 0.00 0.00 2.67
3205 3275 7.228706 AGGAACATAGAAACAAACGAGAACATT 59.771 33.333 0.00 0.00 0.00 2.71
3206 3276 6.710744 AGGAACATAGAAACAAACGAGAACAT 59.289 34.615 0.00 0.00 0.00 2.71
3207 3277 6.018262 CAGGAACATAGAAACAAACGAGAACA 60.018 38.462 0.00 0.00 0.00 3.18
3208 3278 6.018180 ACAGGAACATAGAAACAAACGAGAAC 60.018 38.462 0.00 0.00 0.00 3.01
3209 3279 6.053005 ACAGGAACATAGAAACAAACGAGAA 58.947 36.000 0.00 0.00 0.00 2.87
3210 3280 5.607477 ACAGGAACATAGAAACAAACGAGA 58.393 37.500 0.00 0.00 0.00 4.04
3211 3281 5.924475 ACAGGAACATAGAAACAAACGAG 57.076 39.130 0.00 0.00 0.00 4.18
3212 3282 7.972832 ATTACAGGAACATAGAAACAAACGA 57.027 32.000 0.00 0.00 0.00 3.85
3213 3283 9.458374 AAAATTACAGGAACATAGAAACAAACG 57.542 29.630 0.00 0.00 0.00 3.60
3216 3286 9.959749 GTCAAAATTACAGGAACATAGAAACAA 57.040 29.630 0.00 0.00 0.00 2.83
3217 3287 9.349713 AGTCAAAATTACAGGAACATAGAAACA 57.650 29.630 0.00 0.00 0.00 2.83
3220 3290 8.792633 CCAAGTCAAAATTACAGGAACATAGAA 58.207 33.333 0.00 0.00 0.00 2.10
3221 3291 8.160765 TCCAAGTCAAAATTACAGGAACATAGA 58.839 33.333 0.00 0.00 0.00 1.98
3222 3292 8.335532 TCCAAGTCAAAATTACAGGAACATAG 57.664 34.615 0.00 0.00 0.00 2.23
3223 3293 8.739039 CATCCAAGTCAAAATTACAGGAACATA 58.261 33.333 0.00 0.00 30.38 2.29
3224 3294 7.605449 CATCCAAGTCAAAATTACAGGAACAT 58.395 34.615 0.00 0.00 30.38 2.71
3225 3295 6.516527 GCATCCAAGTCAAAATTACAGGAACA 60.517 38.462 0.00 0.00 30.38 3.18
3226 3296 5.863935 GCATCCAAGTCAAAATTACAGGAAC 59.136 40.000 0.00 0.00 30.38 3.62
3227 3297 5.538053 TGCATCCAAGTCAAAATTACAGGAA 59.462 36.000 0.00 0.00 30.38 3.36
3228 3298 5.076182 TGCATCCAAGTCAAAATTACAGGA 58.924 37.500 0.00 0.00 0.00 3.86
3229 3299 5.389859 TGCATCCAAGTCAAAATTACAGG 57.610 39.130 0.00 0.00 0.00 4.00
3230 3300 7.894376 AAATGCATCCAAGTCAAAATTACAG 57.106 32.000 0.00 0.00 0.00 2.74
3231 3301 9.941325 ATTAAATGCATCCAAGTCAAAATTACA 57.059 25.926 0.00 0.00 0.00 2.41
3264 3334 9.892130 AGAAAAATAAAACGTCAGGATATCTCT 57.108 29.630 2.05 0.00 0.00 3.10
3271 3341 9.491675 TGTACATAGAAAAATAAAACGTCAGGA 57.508 29.630 0.00 0.00 0.00 3.86
3272 3342 9.755064 CTGTACATAGAAAAATAAAACGTCAGG 57.245 33.333 0.00 0.00 0.00 3.86
3273 3343 9.755064 CCTGTACATAGAAAAATAAAACGTCAG 57.245 33.333 0.00 0.00 0.00 3.51
3274 3344 8.723311 CCCTGTACATAGAAAAATAAAACGTCA 58.277 33.333 0.00 0.00 0.00 4.35
3275 3345 7.695201 GCCCTGTACATAGAAAAATAAAACGTC 59.305 37.037 0.00 0.00 0.00 4.34
3276 3346 7.362315 GGCCCTGTACATAGAAAAATAAAACGT 60.362 37.037 0.00 0.00 0.00 3.99
3277 3347 6.970613 GGCCCTGTACATAGAAAAATAAAACG 59.029 38.462 0.00 0.00 0.00 3.60
3278 3348 8.063200 AGGCCCTGTACATAGAAAAATAAAAC 57.937 34.615 0.00 0.00 0.00 2.43
3279 3349 7.891183 TGAGGCCCTGTACATAGAAAAATAAAA 59.109 33.333 0.00 0.00 0.00 1.52
3280 3350 7.406916 TGAGGCCCTGTACATAGAAAAATAAA 58.593 34.615 0.00 0.00 0.00 1.40
3281 3351 6.964464 TGAGGCCCTGTACATAGAAAAATAA 58.036 36.000 0.00 0.00 0.00 1.40
3282 3352 6.569127 TGAGGCCCTGTACATAGAAAAATA 57.431 37.500 0.00 0.00 0.00 1.40
3283 3353 5.450818 TGAGGCCCTGTACATAGAAAAAT 57.549 39.130 0.00 0.00 0.00 1.82
3284 3354 4.919774 TGAGGCCCTGTACATAGAAAAA 57.080 40.909 0.00 0.00 0.00 1.94
3285 3355 4.288626 AGTTGAGGCCCTGTACATAGAAAA 59.711 41.667 0.00 0.00 0.00 2.29
3286 3356 3.844211 AGTTGAGGCCCTGTACATAGAAA 59.156 43.478 0.00 0.00 0.00 2.52
3287 3357 3.450904 AGTTGAGGCCCTGTACATAGAA 58.549 45.455 0.00 0.00 0.00 2.10
3288 3358 3.116096 AGTTGAGGCCCTGTACATAGA 57.884 47.619 0.00 0.00 0.00 1.98
3289 3359 4.262635 CCATAGTTGAGGCCCTGTACATAG 60.263 50.000 0.00 0.00 0.00 2.23
3290 3360 3.646162 CCATAGTTGAGGCCCTGTACATA 59.354 47.826 0.00 0.00 0.00 2.29
3291 3361 2.439507 CCATAGTTGAGGCCCTGTACAT 59.560 50.000 0.00 0.00 0.00 2.29
3292 3362 1.837439 CCATAGTTGAGGCCCTGTACA 59.163 52.381 0.00 0.00 0.00 2.90
3293 3363 1.141053 CCCATAGTTGAGGCCCTGTAC 59.859 57.143 0.00 0.00 0.00 2.90
3294 3364 1.274184 ACCCATAGTTGAGGCCCTGTA 60.274 52.381 0.00 0.00 0.00 2.74
3295 3365 0.550147 ACCCATAGTTGAGGCCCTGT 60.550 55.000 0.00 0.00 0.00 4.00
3296 3366 0.107017 CACCCATAGTTGAGGCCCTG 60.107 60.000 0.00 0.00 0.00 4.45
3297 3367 1.926426 GCACCCATAGTTGAGGCCCT 61.926 60.000 0.00 0.00 0.00 5.19
3298 3368 1.453928 GCACCCATAGTTGAGGCCC 60.454 63.158 0.00 0.00 0.00 5.80
3299 3369 1.453928 GGCACCCATAGTTGAGGCC 60.454 63.158 0.00 0.00 0.00 5.19
3300 3370 0.323360 TTGGCACCCATAGTTGAGGC 60.323 55.000 0.00 0.00 31.53 4.70
3301 3371 2.094675 CTTTGGCACCCATAGTTGAGG 58.905 52.381 0.00 0.00 31.53 3.86
3302 3372 2.749621 GACTTTGGCACCCATAGTTGAG 59.250 50.000 8.42 0.00 43.74 3.02
3303 3373 2.375174 AGACTTTGGCACCCATAGTTGA 59.625 45.455 8.42 0.00 43.74 3.18
3304 3374 2.795329 AGACTTTGGCACCCATAGTTG 58.205 47.619 8.42 0.00 43.74 3.16
3305 3375 3.157087 CAAGACTTTGGCACCCATAGTT 58.843 45.455 8.42 0.00 43.74 2.24
3306 3376 2.555227 CCAAGACTTTGGCACCCATAGT 60.555 50.000 7.01 7.01 46.84 2.12
3307 3377 2.094675 CCAAGACTTTGGCACCCATAG 58.905 52.381 0.00 0.96 46.84 2.23
3308 3378 2.214376 CCAAGACTTTGGCACCCATA 57.786 50.000 0.00 0.00 46.84 2.74
3309 3379 3.056213 CCAAGACTTTGGCACCCAT 57.944 52.632 0.00 0.00 46.84 4.00
3310 3380 4.597032 CCAAGACTTTGGCACCCA 57.403 55.556 0.00 0.00 46.84 4.51
3317 3387 8.133627 CAGGAATAGCATATTTCCAAGACTTTG 58.866 37.037 6.66 0.00 43.21 2.77
3318 3388 7.201857 GCAGGAATAGCATATTTCCAAGACTTT 60.202 37.037 6.66 0.00 43.21 2.66
3319 3389 6.264067 GCAGGAATAGCATATTTCCAAGACTT 59.736 38.462 6.66 0.00 43.21 3.01
3320 3390 5.767168 GCAGGAATAGCATATTTCCAAGACT 59.233 40.000 6.66 0.00 43.21 3.24
3321 3391 5.532406 TGCAGGAATAGCATATTTCCAAGAC 59.468 40.000 6.66 0.00 43.21 3.01
3322 3392 5.532406 GTGCAGGAATAGCATATTTCCAAGA 59.468 40.000 6.66 0.00 44.79 3.02
3323 3393 5.533903 AGTGCAGGAATAGCATATTTCCAAG 59.466 40.000 6.66 1.02 44.79 3.61
3324 3394 5.448654 AGTGCAGGAATAGCATATTTCCAA 58.551 37.500 6.66 0.00 44.79 3.53
3325 3395 5.052693 AGTGCAGGAATAGCATATTTCCA 57.947 39.130 6.66 0.00 44.79 3.53
3326 3396 5.334414 CGAAGTGCAGGAATAGCATATTTCC 60.334 44.000 0.00 0.00 44.79 3.13
3327 3397 5.334414 CCGAAGTGCAGGAATAGCATATTTC 60.334 44.000 0.00 0.00 44.79 2.17
3328 3398 4.516698 CCGAAGTGCAGGAATAGCATATTT 59.483 41.667 0.00 0.00 44.79 1.40
3329 3399 4.067896 CCGAAGTGCAGGAATAGCATATT 58.932 43.478 0.00 0.00 44.79 1.28
3330 3400 3.324846 TCCGAAGTGCAGGAATAGCATAT 59.675 43.478 0.00 0.00 44.79 1.78
3331 3401 2.698274 TCCGAAGTGCAGGAATAGCATA 59.302 45.455 0.00 0.00 44.79 3.14
3332 3402 1.486310 TCCGAAGTGCAGGAATAGCAT 59.514 47.619 0.00 0.00 44.79 3.79
3333 3403 0.901827 TCCGAAGTGCAGGAATAGCA 59.098 50.000 0.00 0.00 40.19 3.49
3334 3404 1.291132 GTCCGAAGTGCAGGAATAGC 58.709 55.000 0.00 0.00 38.41 2.97
3335 3405 1.560923 CGTCCGAAGTGCAGGAATAG 58.439 55.000 0.00 0.00 38.41 1.73
3336 3406 0.459585 GCGTCCGAAGTGCAGGAATA 60.460 55.000 0.00 0.00 38.41 1.75
3337 3407 1.741770 GCGTCCGAAGTGCAGGAAT 60.742 57.895 0.00 0.00 38.41 3.01
3338 3408 2.357034 GCGTCCGAAGTGCAGGAA 60.357 61.111 0.00 0.00 38.41 3.36
3339 3409 4.717629 CGCGTCCGAAGTGCAGGA 62.718 66.667 0.00 0.00 36.29 3.86
3344 3414 3.620300 TACTGGCGCGTCCGAAGTG 62.620 63.158 8.89 2.11 37.80 3.16
3345 3415 3.367743 TACTGGCGCGTCCGAAGT 61.368 61.111 8.89 7.98 37.80 3.01
3346 3416 2.879462 GTACTGGCGCGTCCGAAG 60.879 66.667 8.89 0.46 37.80 3.79
3347 3417 4.424566 GGTACTGGCGCGTCCGAA 62.425 66.667 8.89 0.00 37.80 4.30
3351 3421 3.797145 TATTTCCGGTACTGGCGCGTC 62.797 57.143 16.58 2.29 0.00 5.19
3352 3422 1.947597 TATTTCCGGTACTGGCGCGT 61.948 55.000 16.58 4.60 0.00 6.01
3353 3423 1.213094 CTATTTCCGGTACTGGCGCG 61.213 60.000 16.58 0.00 0.00 6.86
3354 3424 1.496403 GCTATTTCCGGTACTGGCGC 61.496 60.000 16.58 0.00 0.00 6.53
3355 3425 0.104304 AGCTATTTCCGGTACTGGCG 59.896 55.000 16.58 0.00 0.00 5.69
3356 3426 3.679824 ATAGCTATTTCCGGTACTGGC 57.320 47.619 16.58 0.00 0.00 4.85
3357 3427 6.698380 ACATAATAGCTATTTCCGGTACTGG 58.302 40.000 23.47 15.21 0.00 4.00
3358 3428 9.302345 CATACATAATAGCTATTTCCGGTACTG 57.698 37.037 23.47 14.52 0.00 2.74
3359 3429 9.032624 ACATACATAATAGCTATTTCCGGTACT 57.967 33.333 23.47 7.94 0.00 2.73
3362 3432 9.817809 CATACATACATAATAGCTATTTCCGGT 57.182 33.333 23.47 17.17 0.00 5.28
3363 3433 9.817809 ACATACATACATAATAGCTATTTCCGG 57.182 33.333 23.47 12.92 0.00 5.14
3383 3453 9.892130 TTCCACAAACATACATACATACATACA 57.108 29.630 0.00 0.00 0.00 2.29
3387 3457 9.454859 TCAATTCCACAAACATACATACATACA 57.545 29.630 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.