Multiple sequence alignment - TraesCS1B01G466700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G466700 chr1B 100.000 3230 0 0 1 3230 676948850 676952079 0.000000e+00 5965
1 TraesCS1B01G466700 chr1B 88.563 2352 238 19 894 3229 676851750 676854086 0.000000e+00 2824
2 TraesCS1B01G466700 chr1B 87.897 2363 252 26 887 3229 676809999 676812347 0.000000e+00 2748
3 TraesCS1B01G466700 chr1B 84.712 2224 303 22 1019 3226 29823923 29826125 0.000000e+00 2189
4 TraesCS1B01G466700 chr1B 83.692 2183 315 28 1071 3226 29898385 29900553 0.000000e+00 2021
5 TraesCS1B01G466700 chr1B 82.597 2172 331 30 1074 3226 31125234 31127377 0.000000e+00 1873
6 TraesCS1B01G466700 chr1B 83.915 1318 189 14 1920 3226 29085866 29087171 0.000000e+00 1238
7 TraesCS1B01G466700 chr1B 73.192 567 84 36 570 1101 676808591 676809124 3.360000e-30 143
8 TraesCS1B01G466700 chr1D 87.183 2286 263 16 962 3229 486116065 486118338 0.000000e+00 2571
9 TraesCS1B01G466700 chr1D 85.312 2165 292 22 1074 3226 19341295 19343445 0.000000e+00 2213
10 TraesCS1B01G466700 chr1D 82.741 2167 321 28 1074 3226 19807297 19809424 0.000000e+00 1881
11 TraesCS1B01G466700 chrUn 83.660 2191 327 24 1051 3226 116819380 116821554 0.000000e+00 2034
12 TraesCS1B01G466700 chrUn 83.906 2094 296 28 1160 3226 180337352 180339431 0.000000e+00 1962
13 TraesCS1B01G466700 chrUn 82.895 2169 341 15 1072 3226 116836677 116838829 0.000000e+00 1923
14 TraesCS1B01G466700 chr1A 81.118 948 152 22 2303 3226 21076955 21077899 0.000000e+00 734


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G466700 chr1B 676948850 676952079 3229 False 5965.0 5965 100.0000 1 3230 1 chr1B.!!$F6 3229
1 TraesCS1B01G466700 chr1B 676851750 676854086 2336 False 2824.0 2824 88.5630 894 3229 1 chr1B.!!$F5 2335
2 TraesCS1B01G466700 chr1B 29823923 29826125 2202 False 2189.0 2189 84.7120 1019 3226 1 chr1B.!!$F2 2207
3 TraesCS1B01G466700 chr1B 29898385 29900553 2168 False 2021.0 2021 83.6920 1071 3226 1 chr1B.!!$F3 2155
4 TraesCS1B01G466700 chr1B 31125234 31127377 2143 False 1873.0 1873 82.5970 1074 3226 1 chr1B.!!$F4 2152
5 TraesCS1B01G466700 chr1B 676808591 676812347 3756 False 1445.5 2748 80.5445 570 3229 2 chr1B.!!$F7 2659
6 TraesCS1B01G466700 chr1B 29085866 29087171 1305 False 1238.0 1238 83.9150 1920 3226 1 chr1B.!!$F1 1306
7 TraesCS1B01G466700 chr1D 486116065 486118338 2273 False 2571.0 2571 87.1830 962 3229 1 chr1D.!!$F3 2267
8 TraesCS1B01G466700 chr1D 19341295 19343445 2150 False 2213.0 2213 85.3120 1074 3226 1 chr1D.!!$F1 2152
9 TraesCS1B01G466700 chr1D 19807297 19809424 2127 False 1881.0 1881 82.7410 1074 3226 1 chr1D.!!$F2 2152
10 TraesCS1B01G466700 chrUn 116819380 116821554 2174 False 2034.0 2034 83.6600 1051 3226 1 chrUn.!!$F1 2175
11 TraesCS1B01G466700 chrUn 180337352 180339431 2079 False 1962.0 1962 83.9060 1160 3226 1 chrUn.!!$F3 2066
12 TraesCS1B01G466700 chrUn 116836677 116838829 2152 False 1923.0 1923 82.8950 1072 3226 1 chrUn.!!$F2 2154
13 TraesCS1B01G466700 chr1A 21076955 21077899 944 False 734.0 734 81.1180 2303 3226 1 chr1A.!!$F1 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.030101 CCGCGAGATTCCTCTGACTC 59.970 60.0 8.23 0.0 37.28 3.36 F
374 375 0.108992 CTGTGCGCATTTGGCATTCT 60.109 50.0 15.91 0.0 45.17 2.40 F
1265 2404 0.032815 GGAGCTTATCGACCTGGAGC 59.967 60.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 1093 1.003355 CTCCCAACTCACACCGCAT 60.003 57.895 0.00 0.0 0.0 4.73 R
1816 2959 1.184970 TCACGGGTCTGACAGATGCA 61.185 55.000 8.73 0.0 0.0 3.96 R
2779 3950 0.035152 TAATGGTGGTGCTGAGCCTG 60.035 55.000 0.23 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.978674 TTATCTCTAATCTGAATCCACGGT 57.021 37.500 0.00 0.00 0.00 4.83
33 34 8.473358 TTTATCTCTAATCTGAATCCACGGTA 57.527 34.615 0.00 0.00 0.00 4.02
34 35 5.769484 TCTCTAATCTGAATCCACGGTAC 57.231 43.478 0.00 0.00 0.00 3.34
35 36 5.446860 TCTCTAATCTGAATCCACGGTACT 58.553 41.667 0.00 0.00 0.00 2.73
36 37 6.598503 TCTCTAATCTGAATCCACGGTACTA 58.401 40.000 0.00 0.00 0.00 1.82
37 38 6.711194 TCTCTAATCTGAATCCACGGTACTAG 59.289 42.308 0.00 0.00 0.00 2.57
38 39 6.363065 TCTAATCTGAATCCACGGTACTAGT 58.637 40.000 0.00 0.00 0.00 2.57
39 40 5.934402 AATCTGAATCCACGGTACTAGTT 57.066 39.130 0.00 0.00 0.00 2.24
40 41 7.994911 TCTAATCTGAATCCACGGTACTAGTTA 59.005 37.037 0.00 0.00 0.00 2.24
41 42 6.636562 ATCTGAATCCACGGTACTAGTTAG 57.363 41.667 0.00 0.00 0.00 2.34
42 43 5.748402 TCTGAATCCACGGTACTAGTTAGA 58.252 41.667 0.00 0.00 0.00 2.10
43 44 6.182627 TCTGAATCCACGGTACTAGTTAGAA 58.817 40.000 0.00 0.00 0.00 2.10
44 45 6.660521 TCTGAATCCACGGTACTAGTTAGAAA 59.339 38.462 0.00 0.00 0.00 2.52
45 46 7.177216 TCTGAATCCACGGTACTAGTTAGAAAA 59.823 37.037 0.00 0.00 0.00 2.29
46 47 7.669427 TGAATCCACGGTACTAGTTAGAAAAA 58.331 34.615 0.00 0.00 0.00 1.94
66 67 2.202295 AAAACGCTTTTCGCACATGT 57.798 40.000 0.00 0.00 43.23 3.21
67 68 1.753956 AAACGCTTTTCGCACATGTC 58.246 45.000 0.00 0.00 43.23 3.06
68 69 0.040425 AACGCTTTTCGCACATGTCC 60.040 50.000 0.00 0.00 43.23 4.02
69 70 1.163420 ACGCTTTTCGCACATGTCCA 61.163 50.000 0.00 0.00 43.23 4.02
70 71 0.453282 CGCTTTTCGCACATGTCCAG 60.453 55.000 0.00 0.00 39.08 3.86
71 72 0.109597 GCTTTTCGCACATGTCCAGG 60.110 55.000 0.00 0.00 38.92 4.45
72 73 1.238439 CTTTTCGCACATGTCCAGGT 58.762 50.000 0.00 0.00 0.00 4.00
73 74 1.608590 CTTTTCGCACATGTCCAGGTT 59.391 47.619 0.00 0.00 0.00 3.50
74 75 1.686355 TTTCGCACATGTCCAGGTTT 58.314 45.000 0.00 0.00 0.00 3.27
75 76 1.234821 TTCGCACATGTCCAGGTTTC 58.765 50.000 0.00 0.00 0.00 2.78
76 77 0.605319 TCGCACATGTCCAGGTTTCC 60.605 55.000 0.00 0.00 0.00 3.13
77 78 0.888736 CGCACATGTCCAGGTTTCCA 60.889 55.000 0.00 0.00 0.00 3.53
78 79 0.598065 GCACATGTCCAGGTTTCCAC 59.402 55.000 0.00 0.00 0.00 4.02
79 80 1.819305 GCACATGTCCAGGTTTCCACT 60.819 52.381 0.00 0.00 0.00 4.00
80 81 2.154462 CACATGTCCAGGTTTCCACTC 58.846 52.381 0.00 0.00 0.00 3.51
81 82 2.057922 ACATGTCCAGGTTTCCACTCT 58.942 47.619 0.00 0.00 0.00 3.24
82 83 2.039084 ACATGTCCAGGTTTCCACTCTC 59.961 50.000 0.00 0.00 0.00 3.20
83 84 1.056660 TGTCCAGGTTTCCACTCTCC 58.943 55.000 0.00 0.00 0.00 3.71
84 85 1.056660 GTCCAGGTTTCCACTCTCCA 58.943 55.000 0.00 0.00 0.00 3.86
85 86 1.056660 TCCAGGTTTCCACTCTCCAC 58.943 55.000 0.00 0.00 0.00 4.02
86 87 0.764890 CCAGGTTTCCACTCTCCACA 59.235 55.000 0.00 0.00 0.00 4.17
87 88 1.271054 CCAGGTTTCCACTCTCCACAG 60.271 57.143 0.00 0.00 0.00 3.66
88 89 1.417890 CAGGTTTCCACTCTCCACAGT 59.582 52.381 0.00 0.00 0.00 3.55
89 90 1.417890 AGGTTTCCACTCTCCACAGTG 59.582 52.381 0.00 0.00 43.13 3.66
90 91 1.416401 GGTTTCCACTCTCCACAGTGA 59.584 52.381 0.62 0.00 45.92 3.41
91 92 2.548920 GGTTTCCACTCTCCACAGTGAG 60.549 54.545 0.62 0.00 45.92 3.51
92 93 1.342074 TTCCACTCTCCACAGTGAGG 58.658 55.000 0.62 0.00 45.92 3.86
93 94 0.482887 TCCACTCTCCACAGTGAGGA 59.517 55.000 9.12 9.12 45.92 3.71
94 95 0.605589 CCACTCTCCACAGTGAGGAC 59.394 60.000 5.03 0.00 45.92 3.85
95 96 1.626686 CACTCTCCACAGTGAGGACT 58.373 55.000 5.03 0.00 45.92 3.85
96 97 1.967066 CACTCTCCACAGTGAGGACTT 59.033 52.381 5.03 0.00 45.92 3.01
97 98 2.029470 CACTCTCCACAGTGAGGACTTC 60.029 54.545 5.03 0.00 45.92 3.01
98 99 2.158385 ACTCTCCACAGTGAGGACTTCT 60.158 50.000 5.03 0.00 37.83 2.85
99 100 2.491693 CTCTCCACAGTGAGGACTTCTC 59.508 54.545 5.03 0.00 42.74 2.87
100 101 1.201181 CTCCACAGTGAGGACTTCTCG 59.799 57.143 5.03 0.00 45.32 4.04
101 102 0.244994 CCACAGTGAGGACTTCTCGG 59.755 60.000 0.62 0.00 45.32 4.63
102 103 0.389166 CACAGTGAGGACTTCTCGGC 60.389 60.000 0.00 0.00 45.32 5.54
103 104 1.216710 CAGTGAGGACTTCTCGGCC 59.783 63.158 0.00 0.00 45.32 6.13
104 105 2.182030 GTGAGGACTTCTCGGCCG 59.818 66.667 22.12 22.12 45.32 6.13
105 106 3.068691 TGAGGACTTCTCGGCCGG 61.069 66.667 27.83 16.54 45.32 6.13
106 107 4.516195 GAGGACTTCTCGGCCGGC 62.516 72.222 27.83 21.18 32.18 6.13
155 156 4.823419 CACCGCGCCACCCGATAA 62.823 66.667 0.00 0.00 40.02 1.75
156 157 4.524318 ACCGCGCCACCCGATAAG 62.524 66.667 0.00 0.00 40.02 1.73
158 159 4.891727 CGCGCCACCCGATAAGCT 62.892 66.667 0.00 0.00 40.02 3.74
159 160 2.967615 GCGCCACCCGATAAGCTC 60.968 66.667 0.00 0.00 40.02 4.09
160 161 2.280186 CGCCACCCGATAAGCTCC 60.280 66.667 0.00 0.00 40.02 4.70
161 162 2.908015 GCCACCCGATAAGCTCCA 59.092 61.111 0.00 0.00 0.00 3.86
162 163 1.523938 GCCACCCGATAAGCTCCAC 60.524 63.158 0.00 0.00 0.00 4.02
163 164 1.146263 CCACCCGATAAGCTCCACC 59.854 63.158 0.00 0.00 0.00 4.61
164 165 1.146263 CACCCGATAAGCTCCACCC 59.854 63.158 0.00 0.00 0.00 4.61
165 166 2.070650 ACCCGATAAGCTCCACCCC 61.071 63.158 0.00 0.00 0.00 4.95
166 167 1.766461 CCCGATAAGCTCCACCCCT 60.766 63.158 0.00 0.00 0.00 4.79
167 168 1.749033 CCGATAAGCTCCACCCCTC 59.251 63.158 0.00 0.00 0.00 4.30
168 169 1.749033 CGATAAGCTCCACCCCTCC 59.251 63.158 0.00 0.00 0.00 4.30
169 170 1.759459 CGATAAGCTCCACCCCTCCC 61.759 65.000 0.00 0.00 0.00 4.30
170 171 1.759459 GATAAGCTCCACCCCTCCCG 61.759 65.000 0.00 0.00 0.00 5.14
171 172 3.995809 TAAGCTCCACCCCTCCCGG 62.996 68.421 0.00 0.00 0.00 5.73
191 192 4.237207 GGACCCCCGCGAGATTCC 62.237 72.222 8.23 4.13 0.00 3.01
192 193 3.155167 GACCCCCGCGAGATTCCT 61.155 66.667 8.23 0.00 0.00 3.36
193 194 3.153270 GACCCCCGCGAGATTCCTC 62.153 68.421 8.23 0.00 36.08 3.71
194 195 2.840102 CCCCCGCGAGATTCCTCT 60.840 66.667 8.23 0.00 37.28 3.69
195 196 2.419198 CCCCGCGAGATTCCTCTG 59.581 66.667 8.23 0.00 37.28 3.35
196 197 2.127869 CCCCGCGAGATTCCTCTGA 61.128 63.158 8.23 0.00 37.28 3.27
197 198 1.066587 CCCGCGAGATTCCTCTGAC 59.933 63.158 8.23 0.00 37.28 3.51
198 199 1.388065 CCCGCGAGATTCCTCTGACT 61.388 60.000 8.23 0.00 37.28 3.41
199 200 0.030101 CCGCGAGATTCCTCTGACTC 59.970 60.000 8.23 0.00 37.28 3.36
200 201 1.021202 CGCGAGATTCCTCTGACTCT 58.979 55.000 0.00 0.00 37.28 3.24
201 202 1.268488 CGCGAGATTCCTCTGACTCTG 60.268 57.143 0.00 0.00 37.28 3.35
202 203 1.535860 GCGAGATTCCTCTGACTCTGC 60.536 57.143 0.00 0.00 37.28 4.26
203 204 1.268488 CGAGATTCCTCTGACTCTGCG 60.268 57.143 0.00 0.00 37.28 5.18
204 205 1.066908 GAGATTCCTCTGACTCTGCGG 59.933 57.143 0.00 0.00 36.50 5.69
205 206 0.820871 GATTCCTCTGACTCTGCGGT 59.179 55.000 0.00 0.00 0.00 5.68
206 207 0.820871 ATTCCTCTGACTCTGCGGTC 59.179 55.000 0.00 0.00 36.81 4.79
207 208 1.587043 TTCCTCTGACTCTGCGGTCG 61.587 60.000 0.00 0.00 38.91 4.79
208 209 2.487428 CTCTGACTCTGCGGTCGG 59.513 66.667 6.74 6.74 42.24 4.79
209 210 2.033602 TCTGACTCTGCGGTCGGA 59.966 61.111 10.43 10.43 45.79 4.55
210 211 1.587043 CTCTGACTCTGCGGTCGGAA 61.587 60.000 13.93 3.00 46.74 4.30
211 212 1.176619 TCTGACTCTGCGGTCGGAAA 61.177 55.000 11.62 0.00 45.24 3.13
212 213 0.734253 CTGACTCTGCGGTCGGAAAG 60.734 60.000 7.14 0.00 43.20 2.62
213 214 1.446272 GACTCTGCGGTCGGAAAGG 60.446 63.158 0.00 0.00 0.00 3.11
214 215 2.156051 GACTCTGCGGTCGGAAAGGT 62.156 60.000 0.00 0.00 0.00 3.50
215 216 1.738099 CTCTGCGGTCGGAAAGGTG 60.738 63.158 0.00 0.00 0.00 4.00
216 217 3.423154 CTGCGGTCGGAAAGGTGC 61.423 66.667 0.00 0.00 0.00 5.01
222 223 3.311110 TCGGAAAGGTGCGAGCCT 61.311 61.111 0.00 0.00 43.25 4.58
223 224 2.815647 CGGAAAGGTGCGAGCCTC 60.816 66.667 0.00 0.00 41.88 4.70
224 225 2.665603 GGAAAGGTGCGAGCCTCT 59.334 61.111 0.00 0.00 38.03 3.69
225 226 1.448717 GGAAAGGTGCGAGCCTCTC 60.449 63.158 0.00 0.00 38.03 3.20
226 227 1.594310 GAAAGGTGCGAGCCTCTCT 59.406 57.895 0.00 0.00 38.03 3.10
227 228 0.739112 GAAAGGTGCGAGCCTCTCTG 60.739 60.000 0.00 0.00 38.03 3.35
228 229 2.794820 AAAGGTGCGAGCCTCTCTGC 62.795 60.000 0.00 0.00 38.03 4.26
229 230 4.074526 GGTGCGAGCCTCTCTGCA 62.075 66.667 8.46 8.46 37.55 4.41
230 231 2.508887 GTGCGAGCCTCTCTGCAG 60.509 66.667 7.63 7.63 39.26 4.41
231 232 2.677875 TGCGAGCCTCTCTGCAGA 60.678 61.111 17.19 17.19 36.05 4.26
232 233 2.278330 TGCGAGCCTCTCTGCAGAA 61.278 57.895 18.85 8.05 36.05 3.02
233 234 1.079543 GCGAGCCTCTCTGCAGAAA 60.080 57.895 18.85 3.05 33.08 2.52
234 235 1.083242 GCGAGCCTCTCTGCAGAAAG 61.083 60.000 18.85 14.51 33.08 2.62
235 236 0.459934 CGAGCCTCTCTGCAGAAAGG 60.460 60.000 28.82 28.82 0.00 3.11
236 237 0.612744 GAGCCTCTCTGCAGAAAGGT 59.387 55.000 31.85 20.78 0.00 3.50
237 238 0.324285 AGCCTCTCTGCAGAAAGGTG 59.676 55.000 31.85 14.82 0.00 4.00
238 239 1.304509 GCCTCTCTGCAGAAAGGTGC 61.305 60.000 31.85 18.08 44.27 5.01
244 245 4.451652 GCAGAAAGGTGCGCGCTC 62.452 66.667 33.29 28.51 32.74 5.03
245 246 2.740055 CAGAAAGGTGCGCGCTCT 60.740 61.111 33.29 25.20 0.00 4.09
246 247 2.740055 AGAAAGGTGCGCGCTCTG 60.740 61.111 33.29 0.00 0.00 3.35
247 248 4.451652 GAAAGGTGCGCGCTCTGC 62.452 66.667 33.29 16.54 41.47 4.26
248 249 4.996434 AAAGGTGCGCGCTCTGCT 62.996 61.111 33.29 18.61 43.27 4.24
252 253 3.418068 GTGCGCGCTCTGCTCTTT 61.418 61.111 33.29 0.00 43.27 2.52
253 254 3.417224 TGCGCGCTCTGCTCTTTG 61.417 61.111 33.29 0.00 43.27 2.77
254 255 4.157958 GCGCGCTCTGCTCTTTGG 62.158 66.667 26.67 0.00 43.27 3.28
255 256 2.740055 CGCGCTCTGCTCTTTGGT 60.740 61.111 5.56 0.00 43.27 3.67
256 257 2.866028 GCGCTCTGCTCTTTGGTG 59.134 61.111 0.00 0.00 41.73 4.17
257 258 1.963338 GCGCTCTGCTCTTTGGTGT 60.963 57.895 0.00 0.00 41.73 4.16
258 259 1.864862 CGCTCTGCTCTTTGGTGTG 59.135 57.895 0.00 0.00 0.00 3.82
259 260 1.578423 GCTCTGCTCTTTGGTGTGC 59.422 57.895 0.00 0.00 0.00 4.57
260 261 1.864862 CTCTGCTCTTTGGTGTGCG 59.135 57.895 0.00 0.00 0.00 5.34
261 262 1.572085 CTCTGCTCTTTGGTGTGCGG 61.572 60.000 0.00 0.00 35.04 5.69
262 263 2.594303 TGCTCTTTGGTGTGCGGG 60.594 61.111 0.00 0.00 0.00 6.13
263 264 4.043200 GCTCTTTGGTGTGCGGGC 62.043 66.667 0.00 0.00 0.00 6.13
264 265 2.594303 CTCTTTGGTGTGCGGGCA 60.594 61.111 0.00 0.00 0.00 5.36
265 266 2.124109 TCTTTGGTGTGCGGGCAA 60.124 55.556 0.00 0.00 0.00 4.52
266 267 2.027460 CTTTGGTGTGCGGGCAAC 59.973 61.111 0.00 0.00 0.00 4.17
276 277 4.988598 CGGGCAACGGAGTGCACT 62.989 66.667 21.88 21.88 45.00 4.40
277 278 3.050275 GGGCAACGGAGTGCACTC 61.050 66.667 34.25 34.25 45.00 3.51
290 291 3.772636 CACTCCATGTGCTCGACG 58.227 61.111 0.00 0.00 40.06 5.12
291 292 1.212751 CACTCCATGTGCTCGACGA 59.787 57.895 0.00 0.00 40.06 4.20
292 293 0.388520 CACTCCATGTGCTCGACGAA 60.389 55.000 0.00 0.00 40.06 3.85
293 294 0.317160 ACTCCATGTGCTCGACGAAA 59.683 50.000 0.00 0.00 0.00 3.46
294 295 1.066858 ACTCCATGTGCTCGACGAAAT 60.067 47.619 0.00 0.00 0.00 2.17
295 296 1.325640 CTCCATGTGCTCGACGAAATG 59.674 52.381 0.00 1.17 0.00 2.32
296 297 0.247814 CCATGTGCTCGACGAAATGC 60.248 55.000 0.00 0.00 0.00 3.56
297 298 0.247814 CATGTGCTCGACGAAATGCC 60.248 55.000 0.00 0.00 0.00 4.40
298 299 1.369091 ATGTGCTCGACGAAATGCCC 61.369 55.000 0.00 0.00 0.00 5.36
299 300 2.435938 TGCTCGACGAAATGCCCC 60.436 61.111 0.00 0.00 0.00 5.80
300 301 2.125106 GCTCGACGAAATGCCCCT 60.125 61.111 0.00 0.00 0.00 4.79
301 302 2.464459 GCTCGACGAAATGCCCCTG 61.464 63.158 0.00 0.00 0.00 4.45
302 303 1.218047 CTCGACGAAATGCCCCTGA 59.782 57.895 0.00 0.00 0.00 3.86
303 304 0.807667 CTCGACGAAATGCCCCTGAG 60.808 60.000 0.00 0.00 0.00 3.35
304 305 1.218047 CGACGAAATGCCCCTGAGA 59.782 57.895 0.00 0.00 0.00 3.27
305 306 1.084370 CGACGAAATGCCCCTGAGAC 61.084 60.000 0.00 0.00 0.00 3.36
306 307 0.250513 GACGAAATGCCCCTGAGACT 59.749 55.000 0.00 0.00 0.00 3.24
307 308 0.250513 ACGAAATGCCCCTGAGACTC 59.749 55.000 0.00 0.00 0.00 3.36
308 309 0.250234 CGAAATGCCCCTGAGACTCA 59.750 55.000 4.78 4.78 0.00 3.41
309 310 1.741732 CGAAATGCCCCTGAGACTCAG 60.742 57.143 23.34 23.34 43.91 3.35
319 320 2.110901 TGAGACTCAGAGGGACGTAC 57.889 55.000 0.00 0.00 0.00 3.67
320 321 1.350019 TGAGACTCAGAGGGACGTACA 59.650 52.381 0.00 0.00 0.00 2.90
321 322 2.011222 GAGACTCAGAGGGACGTACAG 58.989 57.143 0.00 0.00 0.00 2.74
322 323 1.096416 GACTCAGAGGGACGTACAGG 58.904 60.000 0.00 0.00 0.00 4.00
323 324 0.404812 ACTCAGAGGGACGTACAGGT 59.595 55.000 0.00 0.00 0.00 4.00
324 325 1.632409 ACTCAGAGGGACGTACAGGTA 59.368 52.381 0.00 0.00 0.00 3.08
325 326 2.015587 CTCAGAGGGACGTACAGGTAC 58.984 57.143 0.00 0.00 0.00 3.34
326 327 1.101331 CAGAGGGACGTACAGGTACC 58.899 60.000 2.73 2.73 41.60 3.34
346 347 8.379457 GGTACCTTACCTTAATGACATCATTC 57.621 38.462 10.34 0.00 43.88 2.67
347 348 7.990886 GGTACCTTACCTTAATGACATCATTCA 59.009 37.037 10.34 0.00 43.88 2.57
348 349 9.046296 GTACCTTACCTTAATGACATCATTCAG 57.954 37.037 10.34 9.19 44.67 3.02
349 350 7.633789 ACCTTACCTTAATGACATCATTCAGT 58.366 34.615 10.34 9.13 44.67 3.41
350 351 8.768397 ACCTTACCTTAATGACATCATTCAGTA 58.232 33.333 10.34 8.30 44.67 2.74
351 352 9.784531 CCTTACCTTAATGACATCATTCAGTAT 57.215 33.333 10.34 3.52 44.67 2.12
354 355 8.442632 ACCTTAATGACATCATTCAGTATGTG 57.557 34.615 10.34 0.34 44.67 3.21
355 356 7.012704 ACCTTAATGACATCATTCAGTATGTGC 59.987 37.037 10.34 0.00 44.67 4.57
356 357 7.228108 CCTTAATGACATCATTCAGTATGTGCT 59.772 37.037 10.34 0.00 44.67 4.40
357 358 6.373186 AATGACATCATTCAGTATGTGCTG 57.627 37.500 1.11 0.00 42.45 4.41
358 359 4.835678 TGACATCATTCAGTATGTGCTGT 58.164 39.130 0.00 0.00 36.48 4.40
359 360 4.632688 TGACATCATTCAGTATGTGCTGTG 59.367 41.667 0.00 0.00 36.48 3.66
360 361 3.376234 ACATCATTCAGTATGTGCTGTGC 59.624 43.478 0.00 0.00 35.06 4.57
361 362 2.001872 TCATTCAGTATGTGCTGTGCG 58.998 47.619 0.00 0.00 37.70 5.34
362 363 0.729116 ATTCAGTATGTGCTGTGCGC 59.271 50.000 0.00 0.00 39.75 6.09
370 371 3.603671 TGCTGTGCGCATTTGGCA 61.604 55.556 15.91 18.43 45.47 4.92
371 372 2.125832 GCTGTGCGCATTTGGCAT 60.126 55.556 15.91 0.00 45.17 4.40
372 373 1.738830 GCTGTGCGCATTTGGCATT 60.739 52.632 15.91 0.00 45.17 3.56
373 374 1.689352 GCTGTGCGCATTTGGCATTC 61.689 55.000 15.91 0.00 45.17 2.67
374 375 0.108992 CTGTGCGCATTTGGCATTCT 60.109 50.000 15.91 0.00 45.17 2.40
375 376 0.317799 TGTGCGCATTTGGCATTCTT 59.682 45.000 15.91 0.00 45.17 2.52
376 377 0.717224 GTGCGCATTTGGCATTCTTG 59.283 50.000 15.91 0.00 45.17 3.02
387 388 2.165282 GCATTCTTGCGCTAGAACAC 57.835 50.000 31.37 23.00 39.49 3.32
388 389 1.734465 GCATTCTTGCGCTAGAACACT 59.266 47.619 31.37 16.64 39.49 3.55
389 390 2.475187 GCATTCTTGCGCTAGAACACTG 60.475 50.000 31.37 25.88 39.49 3.66
390 391 2.812358 TTCTTGCGCTAGAACACTGA 57.188 45.000 26.72 7.33 0.00 3.41
391 392 2.354109 TCTTGCGCTAGAACACTGAG 57.646 50.000 19.24 0.00 0.00 3.35
392 393 1.886542 TCTTGCGCTAGAACACTGAGA 59.113 47.619 19.24 0.00 0.00 3.27
393 394 2.296190 TCTTGCGCTAGAACACTGAGAA 59.704 45.455 19.24 0.00 0.00 2.87
394 395 2.065993 TGCGCTAGAACACTGAGAAC 57.934 50.000 9.73 0.00 0.00 3.01
395 396 1.339929 TGCGCTAGAACACTGAGAACA 59.660 47.619 9.73 0.00 0.00 3.18
396 397 2.223947 TGCGCTAGAACACTGAGAACAA 60.224 45.455 9.73 0.00 0.00 2.83
397 398 2.800544 GCGCTAGAACACTGAGAACAAA 59.199 45.455 0.00 0.00 0.00 2.83
398 399 3.120854 GCGCTAGAACACTGAGAACAAAG 60.121 47.826 0.00 0.00 0.00 2.77
399 400 3.430218 CGCTAGAACACTGAGAACAAAGG 59.570 47.826 0.00 0.00 0.00 3.11
400 401 4.381411 GCTAGAACACTGAGAACAAAGGT 58.619 43.478 0.00 0.00 0.00 3.50
401 402 4.816925 GCTAGAACACTGAGAACAAAGGTT 59.183 41.667 0.00 0.00 40.76 3.50
413 414 4.965119 AACAAAGGTTCAGAGACAACAC 57.035 40.909 0.00 0.00 29.00 3.32
414 415 3.950397 ACAAAGGTTCAGAGACAACACA 58.050 40.909 0.00 0.00 0.00 3.72
415 416 4.331968 ACAAAGGTTCAGAGACAACACAA 58.668 39.130 0.00 0.00 0.00 3.33
416 417 4.764823 ACAAAGGTTCAGAGACAACACAAA 59.235 37.500 0.00 0.00 0.00 2.83
417 418 5.106157 ACAAAGGTTCAGAGACAACACAAAG 60.106 40.000 0.00 0.00 0.00 2.77
418 419 2.945668 AGGTTCAGAGACAACACAAAGC 59.054 45.455 0.00 0.00 0.00 3.51
419 420 2.945668 GGTTCAGAGACAACACAAAGCT 59.054 45.455 0.00 0.00 0.00 3.74
420 421 3.002759 GGTTCAGAGACAACACAAAGCTC 59.997 47.826 0.00 0.00 0.00 4.09
421 422 2.838736 TCAGAGACAACACAAAGCTCC 58.161 47.619 0.00 0.00 0.00 4.70
422 423 1.876156 CAGAGACAACACAAAGCTCCC 59.124 52.381 0.00 0.00 0.00 4.30
423 424 0.868406 GAGACAACACAAAGCTCCCG 59.132 55.000 0.00 0.00 0.00 5.14
424 425 1.166531 AGACAACACAAAGCTCCCGC 61.167 55.000 0.00 0.00 0.00 6.13
437 438 4.082523 CCCGCTCCCGCTCAGAAA 62.083 66.667 0.00 0.00 0.00 2.52
438 439 2.047274 CCGCTCCCGCTCAGAAAA 60.047 61.111 0.00 0.00 0.00 2.29
439 440 1.671054 CCGCTCCCGCTCAGAAAAA 60.671 57.895 0.00 0.00 0.00 1.94
440 441 1.639298 CCGCTCCCGCTCAGAAAAAG 61.639 60.000 0.00 0.00 0.00 2.27
441 442 0.670546 CGCTCCCGCTCAGAAAAAGA 60.671 55.000 0.00 0.00 0.00 2.52
442 443 1.523758 GCTCCCGCTCAGAAAAAGAA 58.476 50.000 0.00 0.00 0.00 2.52
443 444 1.466558 GCTCCCGCTCAGAAAAAGAAG 59.533 52.381 0.00 0.00 0.00 2.85
444 445 2.872038 GCTCCCGCTCAGAAAAAGAAGA 60.872 50.000 0.00 0.00 0.00 2.87
445 446 2.999355 CTCCCGCTCAGAAAAAGAAGAG 59.001 50.000 0.00 0.00 0.00 2.85
446 447 2.632996 TCCCGCTCAGAAAAAGAAGAGA 59.367 45.455 0.00 0.00 0.00 3.10
447 448 2.739379 CCCGCTCAGAAAAAGAAGAGAC 59.261 50.000 0.00 0.00 0.00 3.36
448 449 2.739379 CCGCTCAGAAAAAGAAGAGACC 59.261 50.000 0.00 0.00 0.00 3.85
449 450 3.393800 CGCTCAGAAAAAGAAGAGACCA 58.606 45.455 0.00 0.00 0.00 4.02
450 451 3.185391 CGCTCAGAAAAAGAAGAGACCAC 59.815 47.826 0.00 0.00 0.00 4.16
451 452 4.384940 GCTCAGAAAAAGAAGAGACCACT 58.615 43.478 0.00 0.00 0.00 4.00
452 453 4.450757 GCTCAGAAAAAGAAGAGACCACTC 59.549 45.833 0.00 0.00 42.90 3.51
466 467 5.394224 AGACCACTCTAACTTGAGTAAGC 57.606 43.478 0.00 0.00 44.56 3.09
467 468 4.833380 AGACCACTCTAACTTGAGTAAGCA 59.167 41.667 0.00 0.00 44.56 3.91
468 469 5.047660 AGACCACTCTAACTTGAGTAAGCAG 60.048 44.000 0.00 0.00 44.56 4.24
469 470 4.589374 ACCACTCTAACTTGAGTAAGCAGT 59.411 41.667 0.00 0.00 44.56 4.40
470 471 5.070580 ACCACTCTAACTTGAGTAAGCAGTT 59.929 40.000 0.00 0.00 44.56 3.16
471 472 6.267014 ACCACTCTAACTTGAGTAAGCAGTTA 59.733 38.462 0.00 0.00 44.56 2.24
472 473 6.586844 CCACTCTAACTTGAGTAAGCAGTTAC 59.413 42.308 0.00 0.00 44.56 2.50
473 474 7.145985 CACTCTAACTTGAGTAAGCAGTTACA 58.854 38.462 0.00 0.00 44.56 2.41
474 475 7.327275 CACTCTAACTTGAGTAAGCAGTTACAG 59.673 40.741 0.00 0.00 44.56 2.74
475 476 7.014422 ACTCTAACTTGAGTAAGCAGTTACAGT 59.986 37.037 0.00 0.00 44.53 3.55
476 477 7.723324 TCTAACTTGAGTAAGCAGTTACAGTT 58.277 34.615 0.00 3.18 41.06 3.16
477 478 8.202137 TCTAACTTGAGTAAGCAGTTACAGTTT 58.798 33.333 5.80 0.00 41.06 2.66
478 479 7.625828 AACTTGAGTAAGCAGTTACAGTTTT 57.374 32.000 0.00 0.00 41.06 2.43
479 480 7.625828 ACTTGAGTAAGCAGTTACAGTTTTT 57.374 32.000 0.00 0.00 41.06 1.94
480 481 7.472543 ACTTGAGTAAGCAGTTACAGTTTTTG 58.527 34.615 0.00 0.00 41.06 2.44
481 482 6.371809 TGAGTAAGCAGTTACAGTTTTTGG 57.628 37.500 0.00 0.00 41.06 3.28
482 483 5.883673 TGAGTAAGCAGTTACAGTTTTTGGT 59.116 36.000 0.00 0.00 41.06 3.67
483 484 7.049133 TGAGTAAGCAGTTACAGTTTTTGGTA 58.951 34.615 0.00 0.00 41.06 3.25
484 485 7.717875 TGAGTAAGCAGTTACAGTTTTTGGTAT 59.282 33.333 0.00 0.00 41.06 2.73
485 486 8.459911 AGTAAGCAGTTACAGTTTTTGGTATT 57.540 30.769 0.00 0.00 41.06 1.89
486 487 8.349983 AGTAAGCAGTTACAGTTTTTGGTATTG 58.650 33.333 0.00 0.00 41.06 1.90
487 488 5.528870 AGCAGTTACAGTTTTTGGTATTGC 58.471 37.500 0.00 0.00 33.89 3.56
488 489 5.301805 AGCAGTTACAGTTTTTGGTATTGCT 59.698 36.000 0.00 0.00 36.65 3.91
489 490 6.488683 AGCAGTTACAGTTTTTGGTATTGCTA 59.511 34.615 0.00 0.00 38.19 3.49
490 491 6.581166 GCAGTTACAGTTTTTGGTATTGCTAC 59.419 38.462 0.00 0.00 32.38 3.58
491 492 7.081976 CAGTTACAGTTTTTGGTATTGCTACC 58.918 38.462 0.00 0.00 46.65 3.18
500 501 3.760580 GGTATTGCTACCAGAGATGCT 57.239 47.619 0.00 0.00 45.88 3.79
501 502 4.873746 GGTATTGCTACCAGAGATGCTA 57.126 45.455 0.00 0.00 45.88 3.49
502 503 5.413309 GGTATTGCTACCAGAGATGCTAT 57.587 43.478 0.00 0.00 45.88 2.97
503 504 5.174395 GGTATTGCTACCAGAGATGCTATG 58.826 45.833 0.00 0.00 45.88 2.23
505 506 1.345741 TGCTACCAGAGATGCTATGGC 59.654 52.381 7.94 0.00 45.72 4.40
506 507 1.338579 GCTACCAGAGATGCTATGGCC 60.339 57.143 7.94 0.00 45.72 5.36
507 508 2.255406 CTACCAGAGATGCTATGGCCT 58.745 52.381 3.32 0.00 45.72 5.19
508 509 1.516110 ACCAGAGATGCTATGGCCTT 58.484 50.000 3.32 0.00 45.72 4.35
509 510 2.694397 ACCAGAGATGCTATGGCCTTA 58.306 47.619 3.32 0.02 45.72 2.69
510 511 3.048600 ACCAGAGATGCTATGGCCTTAA 58.951 45.455 3.32 0.00 45.72 1.85
511 512 3.654806 ACCAGAGATGCTATGGCCTTAAT 59.345 43.478 3.32 0.00 45.72 1.40
512 513 4.260170 CCAGAGATGCTATGGCCTTAATC 58.740 47.826 3.32 3.27 36.03 1.75
513 514 4.019501 CCAGAGATGCTATGGCCTTAATCT 60.020 45.833 3.32 8.38 36.03 2.40
514 515 5.177326 CAGAGATGCTATGGCCTTAATCTC 58.823 45.833 21.89 21.89 41.03 2.75
515 516 4.224818 AGAGATGCTATGGCCTTAATCTCC 59.775 45.833 23.92 13.75 41.34 3.71
516 517 3.265479 AGATGCTATGGCCTTAATCTCCC 59.735 47.826 3.32 0.00 37.74 4.30
517 518 2.417652 TGCTATGGCCTTAATCTCCCA 58.582 47.619 3.32 0.00 37.74 4.37
518 519 2.373169 TGCTATGGCCTTAATCTCCCAG 59.627 50.000 3.32 0.00 37.74 4.45
519 520 2.639839 GCTATGGCCTTAATCTCCCAGA 59.360 50.000 3.32 0.00 0.00 3.86
520 521 3.558109 GCTATGGCCTTAATCTCCCAGAC 60.558 52.174 3.32 0.00 0.00 3.51
521 522 1.213296 TGGCCTTAATCTCCCAGACC 58.787 55.000 3.32 0.00 0.00 3.85
522 523 1.213296 GGCCTTAATCTCCCAGACCA 58.787 55.000 0.00 0.00 0.00 4.02
523 524 1.134068 GGCCTTAATCTCCCAGACCAC 60.134 57.143 0.00 0.00 0.00 4.16
524 525 1.134068 GCCTTAATCTCCCAGACCACC 60.134 57.143 0.00 0.00 0.00 4.61
525 526 1.490910 CCTTAATCTCCCAGACCACCC 59.509 57.143 0.00 0.00 0.00 4.61
526 527 2.196595 CTTAATCTCCCAGACCACCCA 58.803 52.381 0.00 0.00 0.00 4.51
527 528 2.587060 TAATCTCCCAGACCACCCAT 57.413 50.000 0.00 0.00 0.00 4.00
528 529 2.587060 AATCTCCCAGACCACCCATA 57.413 50.000 0.00 0.00 0.00 2.74
529 530 1.807814 ATCTCCCAGACCACCCATAC 58.192 55.000 0.00 0.00 0.00 2.39
530 531 0.716591 TCTCCCAGACCACCCATACT 59.283 55.000 0.00 0.00 0.00 2.12
531 532 0.833287 CTCCCAGACCACCCATACTG 59.167 60.000 0.00 0.00 0.00 2.74
532 533 1.224592 CCCAGACCACCCATACTGC 59.775 63.158 0.00 0.00 0.00 4.40
533 534 1.274703 CCCAGACCACCCATACTGCT 61.275 60.000 0.00 0.00 0.00 4.24
534 535 0.179000 CCAGACCACCCATACTGCTC 59.821 60.000 0.00 0.00 0.00 4.26
535 536 0.904649 CAGACCACCCATACTGCTCA 59.095 55.000 0.00 0.00 0.00 4.26
536 537 1.487976 CAGACCACCCATACTGCTCAT 59.512 52.381 0.00 0.00 0.00 2.90
537 538 1.487976 AGACCACCCATACTGCTCATG 59.512 52.381 0.00 0.00 0.00 3.07
538 539 1.486310 GACCACCCATACTGCTCATGA 59.514 52.381 0.00 0.00 0.00 3.07
539 540 1.915489 ACCACCCATACTGCTCATGAA 59.085 47.619 0.00 0.00 0.00 2.57
540 541 2.308570 ACCACCCATACTGCTCATGAAA 59.691 45.455 0.00 0.00 0.00 2.69
541 542 3.053395 ACCACCCATACTGCTCATGAAAT 60.053 43.478 0.00 0.00 0.00 2.17
590 591 8.429641 TCATTACTGTATCAAATTAGACCCCTC 58.570 37.037 0.00 0.00 0.00 4.30
594 595 8.024145 ACTGTATCAAATTAGACCCCTCTTAG 57.976 38.462 0.00 0.00 0.00 2.18
599 600 7.510675 TCAAATTAGACCCCTCTTAGAACAT 57.489 36.000 0.00 0.00 0.00 2.71
600 601 8.618240 TCAAATTAGACCCCTCTTAGAACATA 57.382 34.615 0.00 0.00 0.00 2.29
601 602 9.053472 TCAAATTAGACCCCTCTTAGAACATAA 57.947 33.333 0.00 0.00 0.00 1.90
602 603 9.110502 CAAATTAGACCCCTCTTAGAACATAAC 57.889 37.037 0.00 0.00 0.00 1.89
603 604 7.989947 ATTAGACCCCTCTTAGAACATAACA 57.010 36.000 0.00 0.00 0.00 2.41
604 605 5.678955 AGACCCCTCTTAGAACATAACAC 57.321 43.478 0.00 0.00 0.00 3.32
605 606 5.342866 AGACCCCTCTTAGAACATAACACT 58.657 41.667 0.00 0.00 0.00 3.55
606 607 5.422650 AGACCCCTCTTAGAACATAACACTC 59.577 44.000 0.00 0.00 0.00 3.51
607 608 5.091552 ACCCCTCTTAGAACATAACACTCA 58.908 41.667 0.00 0.00 0.00 3.41
608 609 5.046520 ACCCCTCTTAGAACATAACACTCAC 60.047 44.000 0.00 0.00 0.00 3.51
609 610 5.187967 CCCCTCTTAGAACATAACACTCACT 59.812 44.000 0.00 0.00 0.00 3.41
615 616 5.276461 AGAACATAACACTCACTCACACA 57.724 39.130 0.00 0.00 0.00 3.72
630 631 6.071391 TCACTCACACAGCAATACTAATCTCA 60.071 38.462 0.00 0.00 0.00 3.27
634 635 7.161404 TCACACAGCAATACTAATCTCAAAGT 58.839 34.615 0.00 0.00 0.00 2.66
655 656 9.712305 CAAAGTTCTTATCTCTTAACTTCCTCA 57.288 33.333 0.00 0.00 40.35 3.86
656 657 9.936759 AAAGTTCTTATCTCTTAACTTCCTCAG 57.063 33.333 0.00 0.00 40.35 3.35
657 658 8.658840 AGTTCTTATCTCTTAACTTCCTCAGT 57.341 34.615 0.00 0.00 37.30 3.41
659 660 9.713713 GTTCTTATCTCTTAACTTCCTCAGTTT 57.286 33.333 0.00 0.00 43.89 2.66
660 661 9.930693 TTCTTATCTCTTAACTTCCTCAGTTTC 57.069 33.333 0.00 0.00 43.89 2.78
661 662 9.315363 TCTTATCTCTTAACTTCCTCAGTTTCT 57.685 33.333 0.00 0.00 43.89 2.52
662 663 9.581099 CTTATCTCTTAACTTCCTCAGTTTCTC 57.419 37.037 0.00 0.00 43.89 2.87
668 669 5.622346 AACTTCCTCAGTTTCTCTCAAGT 57.378 39.130 0.00 0.00 43.89 3.16
669 670 6.732896 AACTTCCTCAGTTTCTCTCAAGTA 57.267 37.500 0.00 0.00 43.89 2.24
676 677 6.819146 CCTCAGTTTCTCTCAAGTATTAACCC 59.181 42.308 0.00 0.00 0.00 4.11
686 687 7.331026 TCTCAAGTATTAACCCATCTGTTCTG 58.669 38.462 0.00 0.00 0.00 3.02
692 693 5.755409 TTAACCCATCTGTTCTGCTTCTA 57.245 39.130 0.00 0.00 0.00 2.10
693 694 4.851639 AACCCATCTGTTCTGCTTCTAT 57.148 40.909 0.00 0.00 0.00 1.98
694 695 5.957771 AACCCATCTGTTCTGCTTCTATA 57.042 39.130 0.00 0.00 0.00 1.31
698 699 7.349598 ACCCATCTGTTCTGCTTCTATATTTT 58.650 34.615 0.00 0.00 0.00 1.82
702 703 8.896744 CATCTGTTCTGCTTCTATATTTTCCAA 58.103 33.333 0.00 0.00 0.00 3.53
704 705 9.466497 TCTGTTCTGCTTCTATATTTTCCAATT 57.534 29.630 0.00 0.00 0.00 2.32
705 706 9.512435 CTGTTCTGCTTCTATATTTTCCAATTG 57.488 33.333 0.00 0.00 0.00 2.32
710 711 8.359875 TGCTTCTATATTTTCCAATTGTTCCA 57.640 30.769 4.43 0.00 0.00 3.53
721 722 6.855763 TCCAATTGTTCCATTAAATGAGCT 57.144 33.333 4.43 0.00 0.00 4.09
726 727 3.119884 TGTTCCATTAAATGAGCTGCACG 60.120 43.478 1.02 0.00 0.00 5.34
735 736 1.224069 TGAGCTGCACGCAACTTCTC 61.224 55.000 1.02 0.90 42.61 2.87
736 737 1.224069 GAGCTGCACGCAACTTCTCA 61.224 55.000 1.02 0.00 42.61 3.27
738 739 1.775039 GCTGCACGCAACTTCTCACA 61.775 55.000 0.00 0.00 38.92 3.58
758 759 2.913777 TGAGTCCATGACTAACGTCG 57.086 50.000 0.00 0.00 43.53 5.12
759 760 2.429478 TGAGTCCATGACTAACGTCGA 58.571 47.619 0.00 0.00 43.53 4.20
762 763 2.161808 AGTCCATGACTAACGTCGACAG 59.838 50.000 17.16 10.90 41.51 3.51
772 773 6.091123 ACTAACGTCGACAGCAAAATAATC 57.909 37.500 17.16 0.00 0.00 1.75
782 783 7.061752 GACAGCAAAATAATCTGTCGTAGTT 57.938 36.000 5.95 0.00 44.60 2.24
783 784 7.435068 ACAGCAAAATAATCTGTCGTAGTTT 57.565 32.000 0.00 0.00 36.42 2.66
785 786 8.440833 ACAGCAAAATAATCTGTCGTAGTTTAC 58.559 33.333 0.00 0.00 36.42 2.01
790 791 9.715121 AAAATAATCTGTCGTAGTTTACAAGGA 57.285 29.630 0.00 0.00 0.00 3.36
792 793 4.170292 TCTGTCGTAGTTTACAAGGAGC 57.830 45.455 0.00 0.00 0.00 4.70
793 794 3.570975 TCTGTCGTAGTTTACAAGGAGCA 59.429 43.478 0.00 0.00 0.00 4.26
802 803 3.806949 TTACAAGGAGCACCAAGGAAT 57.193 42.857 2.07 0.00 38.94 3.01
806 807 3.074538 ACAAGGAGCACCAAGGAATACTT 59.925 43.478 2.07 0.00 41.00 2.24
811 812 5.191722 AGGAGCACCAAGGAATACTTATGAA 59.808 40.000 2.07 0.00 37.29 2.57
818 819 8.840321 CACCAAGGAATACTTATGAATACAAGG 58.160 37.037 0.00 0.00 37.29 3.61
819 820 8.557450 ACCAAGGAATACTTATGAATACAAGGT 58.443 33.333 0.00 0.00 37.29 3.50
833 834 8.259049 TGAATACAAGGTAGAAATAACCAACG 57.741 34.615 0.00 0.00 39.64 4.10
841 842 2.484264 AGAAATAACCAACGCAGAGCAC 59.516 45.455 0.00 0.00 0.00 4.40
844 845 1.227999 TAACCAACGCAGAGCACAGC 61.228 55.000 0.00 0.00 0.00 4.40
845 846 2.667536 CCAACGCAGAGCACAGCT 60.668 61.111 0.00 0.00 43.88 4.24
868 870 6.545504 TGAGCGAGCTATTAAATTGGAATC 57.454 37.500 0.00 0.00 0.00 2.52
873 875 6.294176 GCGAGCTATTAAATTGGAATCCACAT 60.294 38.462 0.00 0.00 30.78 3.21
875 877 7.530426 AGCTATTAAATTGGAATCCACATCC 57.470 36.000 0.00 0.00 37.48 3.51
883 885 1.106285 GAATCCACATCCAGGTTGGC 58.894 55.000 2.45 0.00 37.47 4.52
884 886 0.706433 AATCCACATCCAGGTTGGCT 59.294 50.000 2.45 0.00 37.47 4.75
887 889 0.251297 CCACATCCAGGTTGGCTGAA 60.251 55.000 5.99 0.00 35.77 3.02
889 891 1.542915 CACATCCAGGTTGGCTGAAAG 59.457 52.381 5.99 0.00 35.77 2.62
890 892 1.425066 ACATCCAGGTTGGCTGAAAGA 59.575 47.619 5.99 0.00 35.77 2.52
925 954 6.319658 TCTTGCCTTATGCTAGGATTTTCTTG 59.680 38.462 0.65 0.00 42.26 3.02
934 963 0.179189 GGATTTTCTTGCGCTCACCG 60.179 55.000 9.73 0.00 40.75 4.94
966 996 3.138283 TCCTGGGAAATTCAGTCAACACT 59.862 43.478 0.00 0.00 0.00 3.55
967 997 3.891366 CCTGGGAAATTCAGTCAACACTT 59.109 43.478 0.00 0.00 0.00 3.16
970 1000 3.319122 GGGAAATTCAGTCAACACTTGCT 59.681 43.478 0.00 0.00 0.00 3.91
971 1001 4.540824 GGAAATTCAGTCAACACTTGCTC 58.459 43.478 0.00 0.00 0.00 4.26
972 1002 4.036734 GGAAATTCAGTCAACACTTGCTCA 59.963 41.667 0.00 0.00 0.00 4.26
973 1003 4.558538 AATTCAGTCAACACTTGCTCAC 57.441 40.909 0.00 0.00 0.00 3.51
974 1004 1.953559 TCAGTCAACACTTGCTCACC 58.046 50.000 0.00 0.00 0.00 4.02
988 1020 1.808945 GCTCACCAGTTGTCCTTGATG 59.191 52.381 0.00 0.00 0.00 3.07
989 1021 1.808945 CTCACCAGTTGTCCTTGATGC 59.191 52.381 0.00 0.00 0.00 3.91
997 1029 3.008813 AGTTGTCCTTGATGCAGATCTGT 59.991 43.478 23.38 4.98 0.00 3.41
1057 1093 2.418197 GCGCTTGTATTCCCTGTGTCTA 60.418 50.000 0.00 0.00 0.00 2.59
1059 1095 3.804325 CGCTTGTATTCCCTGTGTCTATG 59.196 47.826 0.00 0.00 0.00 2.23
1061 1097 3.452755 TGTATTCCCTGTGTCTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
1182 2321 1.228228 GGATGGCATGGAGGAGCAA 59.772 57.895 3.81 0.00 0.00 3.91
1200 2339 1.949847 AACGTGAGATCCTGGAGCGG 61.950 60.000 6.27 0.37 0.00 5.52
1227 2366 1.954382 CCAGCCATCTTGGACATCATG 59.046 52.381 0.00 0.00 40.96 3.07
1254 2393 1.414550 GCGGAGGAGAAAGGAGCTTAT 59.585 52.381 0.00 0.00 0.00 1.73
1265 2404 0.032815 GGAGCTTATCGACCTGGAGC 59.967 60.000 0.00 0.00 0.00 4.70
1329 2468 4.549680 GCGAATGATGTCTTCGATGAGTTG 60.550 45.833 9.40 0.00 46.36 3.16
1365 2504 2.736995 CGCGACGCCAAGGAGAAA 60.737 61.111 15.34 0.00 0.00 2.52
1413 2552 1.745489 GGTAAGCCTGTTCCCTGCG 60.745 63.158 0.00 0.00 0.00 5.18
1446 2585 2.369203 TGTGTTTCGTTACAGGATGGGA 59.631 45.455 0.00 0.00 43.62 4.37
1513 2652 5.884792 ACAGAGATGAATGACTTTGGATTCC 59.115 40.000 0.00 0.00 0.00 3.01
1567 2707 2.248487 GGCGTATCACGGATTCGATAC 58.752 52.381 0.00 0.00 42.82 2.24
1620 2760 5.090139 AGGTCCAGAGATGAAGAGAAGAAA 58.910 41.667 0.00 0.00 0.00 2.52
1680 2823 3.044894 GAGGGATCTCATTGTCCTTCCT 58.955 50.000 0.00 0.00 39.74 3.36
1734 2877 2.065993 TCGCTCAGCTTGTCTACAAC 57.934 50.000 0.00 0.00 0.00 3.32
1738 2881 2.862530 GCTCAGCTTGTCTACAACGACA 60.863 50.000 0.00 0.00 41.82 4.35
1816 2959 5.493133 TGACGTTGTTAAGATTGCAAACT 57.507 34.783 1.71 2.40 0.00 2.66
1831 2974 1.808945 CAAACTGCATCTGTCAGACCC 59.191 52.381 4.21 0.00 35.61 4.46
1928 3071 6.243148 TGGATGATGTATGGAATGAAGATGG 58.757 40.000 0.00 0.00 0.00 3.51
2216 3366 2.351253 CCTTCGGATCTATGCTGAGACG 60.351 54.545 0.00 0.00 0.00 4.18
2473 3623 3.010420 AGGTAGGCAGAGAAATTTTCGC 58.990 45.455 4.88 4.88 34.02 4.70
2542 3710 3.058155 CGTCCAAGAGAAGAGAACGAGAA 60.058 47.826 0.00 0.00 0.00 2.87
2672 3840 2.113774 CTGTTGTCAGCAGGCCCA 59.886 61.111 8.73 0.00 34.79 5.36
2688 3856 0.105964 CCCAACTCGTCACCTGTTCA 59.894 55.000 0.00 0.00 0.00 3.18
2690 3858 1.202533 CCAACTCGTCACCTGTTCACT 60.203 52.381 0.00 0.00 0.00 3.41
2695 3863 2.989840 CTCGTCACCTGTTCACTTCATC 59.010 50.000 0.00 0.00 0.00 2.92
2704 3872 3.743521 TGTTCACTTCATCTGGGTTCAG 58.256 45.455 0.00 0.00 42.21 3.02
2763 3931 1.530293 CAGCTCTTCAGACACTGTTGC 59.470 52.381 0.00 0.00 32.61 4.17
2798 3969 0.035152 CAGGCTCAGCACCACCATTA 60.035 55.000 0.00 0.00 0.00 1.90
2814 3985 7.655732 CACCACCATTATCGAAGTACAATCATA 59.344 37.037 0.00 0.00 0.00 2.15
2837 4008 2.341257 CGAGCACTGCAACTCTGTAAT 58.659 47.619 3.30 0.00 0.00 1.89
2865 4042 3.202151 AGAACTTCCACTTCAACCAAGGA 59.798 43.478 0.00 0.00 36.26 3.36
2895 4072 4.871822 TCACCTGAGGTATCTTGATCTCA 58.128 43.478 2.59 0.00 32.11 3.27
2913 4096 8.853077 TGATCTCACAAACAGTTCTATCAAAT 57.147 30.769 0.00 0.00 0.00 2.32
2985 4168 3.937814 TCATATTGCACGAGACTTGGTT 58.062 40.909 0.00 0.00 0.00 3.67
3083 4266 1.831652 CTCCAGACCTCGGGCAACTT 61.832 60.000 0.00 0.00 0.00 2.66
3114 4297 9.645059 CTCTTCAGACTCTAACATATTTTGTGA 57.355 33.333 0.00 0.00 38.99 3.58
3134 4317 1.115467 CGGGCTCTAGTCCTGATTGT 58.885 55.000 0.00 0.00 37.76 2.71
3179 4362 6.209391 AGGACTTAAATCTTGGTGGTGAATTG 59.791 38.462 0.00 0.00 0.00 2.32
3190 4373 3.057245 GGTGGTGAATTGGAGCTTTCTTC 60.057 47.826 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.090103 ACCGTGGATTCAGATTAGAGATAAATA 57.910 33.333 0.00 0.00 0.00 1.40
7 8 7.967908 ACCGTGGATTCAGATTAGAGATAAAT 58.032 34.615 0.00 0.00 0.00 1.40
8 9 7.361457 ACCGTGGATTCAGATTAGAGATAAA 57.639 36.000 0.00 0.00 0.00 1.40
9 10 6.978674 ACCGTGGATTCAGATTAGAGATAA 57.021 37.500 0.00 0.00 0.00 1.75
10 11 7.232188 AGTACCGTGGATTCAGATTAGAGATA 58.768 38.462 0.00 0.00 0.00 1.98
11 12 6.071984 AGTACCGTGGATTCAGATTAGAGAT 58.928 40.000 0.00 0.00 0.00 2.75
12 13 5.446860 AGTACCGTGGATTCAGATTAGAGA 58.553 41.667 0.00 0.00 0.00 3.10
13 14 5.776173 AGTACCGTGGATTCAGATTAGAG 57.224 43.478 0.00 0.00 0.00 2.43
14 15 6.363065 ACTAGTACCGTGGATTCAGATTAGA 58.637 40.000 0.00 0.00 0.00 2.10
15 16 6.636562 ACTAGTACCGTGGATTCAGATTAG 57.363 41.667 0.00 0.00 0.00 1.73
16 17 7.994911 TCTAACTAGTACCGTGGATTCAGATTA 59.005 37.037 0.00 0.00 0.00 1.75
17 18 5.934402 AACTAGTACCGTGGATTCAGATT 57.066 39.130 0.00 0.00 0.00 2.40
18 19 6.363065 TCTAACTAGTACCGTGGATTCAGAT 58.637 40.000 0.00 0.00 0.00 2.90
19 20 5.748402 TCTAACTAGTACCGTGGATTCAGA 58.252 41.667 0.00 0.00 0.00 3.27
20 21 6.446781 TTCTAACTAGTACCGTGGATTCAG 57.553 41.667 0.00 0.00 0.00 3.02
21 22 6.839124 TTTCTAACTAGTACCGTGGATTCA 57.161 37.500 0.00 0.00 0.00 2.57
53 54 1.238439 ACCTGGACATGTGCGAAAAG 58.762 50.000 13.03 4.24 0.00 2.27
54 55 1.686355 AACCTGGACATGTGCGAAAA 58.314 45.000 13.03 0.00 0.00 2.29
55 56 1.606668 GAAACCTGGACATGTGCGAAA 59.393 47.619 13.03 0.00 0.00 3.46
56 57 1.234821 GAAACCTGGACATGTGCGAA 58.765 50.000 13.03 0.00 0.00 4.70
57 58 0.605319 GGAAACCTGGACATGTGCGA 60.605 55.000 13.03 1.36 0.00 5.10
58 59 0.888736 TGGAAACCTGGACATGTGCG 60.889 55.000 13.03 7.46 0.00 5.34
59 60 0.598065 GTGGAAACCTGGACATGTGC 59.402 55.000 10.90 10.90 0.00 4.57
60 61 2.154462 GAGTGGAAACCTGGACATGTG 58.846 52.381 1.15 0.00 0.00 3.21
61 62 2.039084 GAGAGTGGAAACCTGGACATGT 59.961 50.000 0.00 0.00 0.00 3.21
62 63 2.616510 GGAGAGTGGAAACCTGGACATG 60.617 54.545 0.00 0.00 0.00 3.21
63 64 1.630878 GGAGAGTGGAAACCTGGACAT 59.369 52.381 0.00 0.00 0.00 3.06
64 65 1.056660 GGAGAGTGGAAACCTGGACA 58.943 55.000 0.00 0.00 0.00 4.02
65 66 1.056660 TGGAGAGTGGAAACCTGGAC 58.943 55.000 0.00 0.00 0.00 4.02
66 67 1.056660 GTGGAGAGTGGAAACCTGGA 58.943 55.000 0.00 0.00 0.00 3.86
67 68 0.764890 TGTGGAGAGTGGAAACCTGG 59.235 55.000 0.00 0.00 0.00 4.45
68 69 1.417890 ACTGTGGAGAGTGGAAACCTG 59.582 52.381 0.00 0.00 0.00 4.00
69 70 1.417890 CACTGTGGAGAGTGGAAACCT 59.582 52.381 0.00 0.00 39.85 3.50
70 71 1.416401 TCACTGTGGAGAGTGGAAACC 59.584 52.381 8.11 0.00 43.16 3.27
71 72 2.548920 CCTCACTGTGGAGAGTGGAAAC 60.549 54.545 8.11 0.00 43.16 2.78
72 73 1.694150 CCTCACTGTGGAGAGTGGAAA 59.306 52.381 8.11 0.00 43.16 3.13
73 74 1.133167 TCCTCACTGTGGAGAGTGGAA 60.133 52.381 8.11 0.00 43.16 3.53
74 75 0.482887 TCCTCACTGTGGAGAGTGGA 59.517 55.000 8.11 4.16 43.16 4.02
75 76 0.605589 GTCCTCACTGTGGAGAGTGG 59.394 60.000 8.11 1.98 43.16 4.00
76 77 1.626686 AGTCCTCACTGTGGAGAGTG 58.373 55.000 8.11 0.00 44.14 3.51
77 78 2.158385 AGAAGTCCTCACTGTGGAGAGT 60.158 50.000 8.11 5.35 37.05 3.24
78 79 2.491693 GAGAAGTCCTCACTGTGGAGAG 59.508 54.545 8.11 0.00 41.58 3.20
79 80 2.520069 GAGAAGTCCTCACTGTGGAGA 58.480 52.381 8.11 2.33 41.58 3.71
80 81 1.201181 CGAGAAGTCCTCACTGTGGAG 59.799 57.143 8.11 4.34 42.06 3.86
81 82 1.248486 CGAGAAGTCCTCACTGTGGA 58.752 55.000 8.11 0.00 42.06 4.02
82 83 0.244994 CCGAGAAGTCCTCACTGTGG 59.755 60.000 8.11 0.00 42.06 4.17
83 84 0.389166 GCCGAGAAGTCCTCACTGTG 60.389 60.000 0.17 0.17 42.06 3.66
84 85 1.536943 GGCCGAGAAGTCCTCACTGT 61.537 60.000 0.00 0.00 42.06 3.55
85 86 1.216710 GGCCGAGAAGTCCTCACTG 59.783 63.158 0.00 0.00 42.06 3.66
86 87 2.344203 CGGCCGAGAAGTCCTCACT 61.344 63.158 24.07 0.00 42.06 3.41
87 88 2.182030 CGGCCGAGAAGTCCTCAC 59.818 66.667 24.07 0.00 42.06 3.51
88 89 3.068691 CCGGCCGAGAAGTCCTCA 61.069 66.667 30.73 0.00 42.06 3.86
89 90 4.516195 GCCGGCCGAGAAGTCCTC 62.516 72.222 30.73 0.00 38.55 3.71
138 139 4.823419 TTATCGGGTGGCGCGGTG 62.823 66.667 8.83 0.00 40.17 4.94
139 140 4.524318 CTTATCGGGTGGCGCGGT 62.524 66.667 8.83 1.30 40.17 5.68
141 142 4.891727 AGCTTATCGGGTGGCGCG 62.892 66.667 0.00 0.00 41.10 6.86
142 143 2.967615 GAGCTTATCGGGTGGCGC 60.968 66.667 0.00 0.00 0.00 6.53
143 144 2.280186 GGAGCTTATCGGGTGGCG 60.280 66.667 0.00 0.00 0.00 5.69
144 145 1.523938 GTGGAGCTTATCGGGTGGC 60.524 63.158 0.00 0.00 0.00 5.01
145 146 1.146263 GGTGGAGCTTATCGGGTGG 59.854 63.158 0.00 0.00 0.00 4.61
146 147 1.146263 GGGTGGAGCTTATCGGGTG 59.854 63.158 0.00 0.00 0.00 4.61
147 148 2.070650 GGGGTGGAGCTTATCGGGT 61.071 63.158 0.00 0.00 0.00 5.28
148 149 1.759459 GAGGGGTGGAGCTTATCGGG 61.759 65.000 0.00 0.00 0.00 5.14
149 150 1.749033 GAGGGGTGGAGCTTATCGG 59.251 63.158 0.00 0.00 0.00 4.18
150 151 1.749033 GGAGGGGTGGAGCTTATCG 59.251 63.158 0.00 0.00 0.00 2.92
151 152 1.759459 CGGGAGGGGTGGAGCTTATC 61.759 65.000 0.00 0.00 0.00 1.75
152 153 1.766461 CGGGAGGGGTGGAGCTTAT 60.766 63.158 0.00 0.00 0.00 1.73
153 154 2.365105 CGGGAGGGGTGGAGCTTA 60.365 66.667 0.00 0.00 0.00 3.09
174 175 4.237207 GGAATCTCGCGGGGGTCC 62.237 72.222 5.94 9.89 0.00 4.46
175 176 3.153270 GAGGAATCTCGCGGGGGTC 62.153 68.421 5.94 3.31 0.00 4.46
176 177 3.155167 GAGGAATCTCGCGGGGGT 61.155 66.667 5.94 0.00 0.00 4.95
177 178 2.840102 AGAGGAATCTCGCGGGGG 60.840 66.667 5.94 0.00 44.47 5.40
178 179 2.127869 TCAGAGGAATCTCGCGGGG 61.128 63.158 5.94 0.00 44.47 5.73
179 180 1.066587 GTCAGAGGAATCTCGCGGG 59.933 63.158 6.13 1.01 44.47 6.13
180 181 0.030101 GAGTCAGAGGAATCTCGCGG 59.970 60.000 6.13 0.00 44.47 6.46
181 182 1.021202 AGAGTCAGAGGAATCTCGCG 58.979 55.000 0.00 0.00 44.65 5.87
182 183 1.535860 GCAGAGTCAGAGGAATCTCGC 60.536 57.143 0.00 0.00 44.65 5.03
183 184 1.268488 CGCAGAGTCAGAGGAATCTCG 60.268 57.143 0.00 0.00 44.65 4.04
184 185 1.066908 CCGCAGAGTCAGAGGAATCTC 59.933 57.143 0.00 0.00 44.65 2.75
186 187 0.820871 ACCGCAGAGTCAGAGGAATC 59.179 55.000 12.26 0.00 38.38 2.52
187 188 0.820871 GACCGCAGAGTCAGAGGAAT 59.179 55.000 12.26 0.00 36.73 3.01
188 189 1.587043 CGACCGCAGAGTCAGAGGAA 61.587 60.000 12.26 0.00 36.52 3.36
189 190 2.041115 CGACCGCAGAGTCAGAGGA 61.041 63.158 12.26 0.00 36.52 3.71
190 191 2.487428 CGACCGCAGAGTCAGAGG 59.513 66.667 3.70 3.70 36.52 3.69
191 192 1.587043 TTCCGACCGCAGAGTCAGAG 61.587 60.000 0.00 0.00 36.52 3.35
192 193 1.176619 TTTCCGACCGCAGAGTCAGA 61.177 55.000 0.00 0.00 36.52 3.27
193 194 0.734253 CTTTCCGACCGCAGAGTCAG 60.734 60.000 0.00 0.00 36.52 3.51
194 195 1.289066 CTTTCCGACCGCAGAGTCA 59.711 57.895 0.00 0.00 36.52 3.41
195 196 1.446272 CCTTTCCGACCGCAGAGTC 60.446 63.158 0.00 0.00 0.00 3.36
196 197 2.207924 ACCTTTCCGACCGCAGAGT 61.208 57.895 0.00 0.00 0.00 3.24
197 198 1.738099 CACCTTTCCGACCGCAGAG 60.738 63.158 0.00 0.00 0.00 3.35
198 199 2.342279 CACCTTTCCGACCGCAGA 59.658 61.111 0.00 0.00 0.00 4.26
199 200 3.423154 GCACCTTTCCGACCGCAG 61.423 66.667 0.00 0.00 0.00 5.18
202 203 2.809601 CTCGCACCTTTCCGACCG 60.810 66.667 0.00 0.00 0.00 4.79
203 204 3.119096 GCTCGCACCTTTCCGACC 61.119 66.667 0.00 0.00 0.00 4.79
204 205 3.119096 GGCTCGCACCTTTCCGAC 61.119 66.667 0.00 0.00 0.00 4.79
205 206 3.296709 GAGGCTCGCACCTTTCCGA 62.297 63.158 0.00 0.00 41.32 4.55
206 207 2.815647 GAGGCTCGCACCTTTCCG 60.816 66.667 0.00 0.00 41.32 4.30
207 208 1.448717 GAGAGGCTCGCACCTTTCC 60.449 63.158 13.67 0.00 41.32 3.13
208 209 0.739112 CAGAGAGGCTCGCACCTTTC 60.739 60.000 20.44 5.33 41.32 2.62
209 210 1.294780 CAGAGAGGCTCGCACCTTT 59.705 57.895 20.44 0.00 41.32 3.11
210 211 2.977178 CAGAGAGGCTCGCACCTT 59.023 61.111 20.44 0.00 41.32 3.50
211 212 3.768922 GCAGAGAGGCTCGCACCT 61.769 66.667 20.44 8.28 45.04 4.00
212 213 4.074526 TGCAGAGAGGCTCGCACC 62.075 66.667 20.44 10.60 36.05 5.01
213 214 2.498291 TTCTGCAGAGAGGCTCGCAC 62.498 60.000 20.44 12.06 36.05 5.34
214 215 1.820010 TTTCTGCAGAGAGGCTCGCA 61.820 55.000 20.44 16.76 37.55 5.10
215 216 1.079543 TTTCTGCAGAGAGGCTCGC 60.080 57.895 17.43 10.52 35.36 5.03
216 217 0.459934 CCTTTCTGCAGAGAGGCTCG 60.460 60.000 33.39 15.22 39.21 5.03
217 218 0.612744 ACCTTTCTGCAGAGAGGCTC 59.387 55.000 39.77 6.34 46.99 4.70
218 219 0.324285 CACCTTTCTGCAGAGAGGCT 59.676 55.000 39.77 28.10 46.99 4.58
219 220 1.304509 GCACCTTTCTGCAGAGAGGC 61.305 60.000 39.77 28.04 46.99 4.70
221 222 1.633852 GCGCACCTTTCTGCAGAGAG 61.634 60.000 23.95 23.95 36.94 3.20
222 223 1.669115 GCGCACCTTTCTGCAGAGA 60.669 57.895 17.43 12.00 36.94 3.10
223 224 2.866028 GCGCACCTTTCTGCAGAG 59.134 61.111 17.43 8.25 36.94 3.35
224 225 3.043713 CGCGCACCTTTCTGCAGA 61.044 61.111 13.74 13.74 36.94 4.26
225 226 4.748679 GCGCGCACCTTTCTGCAG 62.749 66.667 29.10 7.63 36.94 4.41
227 228 4.451652 GAGCGCGCACCTTTCTGC 62.452 66.667 35.10 6.53 0.00 4.26
228 229 2.740055 AGAGCGCGCACCTTTCTG 60.740 61.111 35.10 0.00 0.00 3.02
229 230 2.740055 CAGAGCGCGCACCTTTCT 60.740 61.111 35.10 23.54 0.00 2.52
230 231 4.451652 GCAGAGCGCGCACCTTTC 62.452 66.667 35.10 21.49 0.00 2.62
239 240 1.963338 ACACCAAAGAGCAGAGCGC 60.963 57.895 0.00 0.00 42.91 5.92
240 241 1.864862 CACACCAAAGAGCAGAGCG 59.135 57.895 0.00 0.00 0.00 5.03
241 242 1.578423 GCACACCAAAGAGCAGAGC 59.422 57.895 0.00 0.00 0.00 4.09
242 243 1.572085 CCGCACACCAAAGAGCAGAG 61.572 60.000 0.00 0.00 0.00 3.35
243 244 1.597854 CCGCACACCAAAGAGCAGA 60.598 57.895 0.00 0.00 0.00 4.26
244 245 2.620112 CCCGCACACCAAAGAGCAG 61.620 63.158 0.00 0.00 0.00 4.24
245 246 2.594303 CCCGCACACCAAAGAGCA 60.594 61.111 0.00 0.00 0.00 4.26
246 247 4.043200 GCCCGCACACCAAAGAGC 62.043 66.667 0.00 0.00 0.00 4.09
247 248 2.192861 TTGCCCGCACACCAAAGAG 61.193 57.895 0.00 0.00 0.00 2.85
248 249 2.124109 TTGCCCGCACACCAAAGA 60.124 55.556 0.00 0.00 0.00 2.52
249 250 2.027460 GTTGCCCGCACACCAAAG 59.973 61.111 0.00 0.00 0.00 2.77
250 251 3.893763 CGTTGCCCGCACACCAAA 61.894 61.111 0.00 0.00 0.00 3.28
259 260 4.988598 AGTGCACTCCGTTGCCCG 62.989 66.667 15.25 0.00 42.25 6.13
260 261 3.050275 GAGTGCACTCCGTTGCCC 61.050 66.667 32.55 8.84 42.25 5.36
274 275 0.317160 TTTCGTCGAGCACATGGAGT 59.683 50.000 0.00 0.00 0.00 3.85
275 276 1.325640 CATTTCGTCGAGCACATGGAG 59.674 52.381 0.00 0.00 0.00 3.86
276 277 1.358877 CATTTCGTCGAGCACATGGA 58.641 50.000 0.00 0.00 0.00 3.41
277 278 0.247814 GCATTTCGTCGAGCACATGG 60.248 55.000 0.00 0.00 0.00 3.66
278 279 0.247814 GGCATTTCGTCGAGCACATG 60.248 55.000 7.20 0.00 0.00 3.21
279 280 1.369091 GGGCATTTCGTCGAGCACAT 61.369 55.000 7.20 0.00 0.00 3.21
280 281 2.032634 GGGCATTTCGTCGAGCACA 61.033 57.895 7.20 0.00 0.00 4.57
281 282 2.750888 GGGGCATTTCGTCGAGCAC 61.751 63.158 7.20 3.26 0.00 4.40
282 283 2.435938 GGGGCATTTCGTCGAGCA 60.436 61.111 7.20 0.00 0.00 4.26
283 284 2.125106 AGGGGCATTTCGTCGAGC 60.125 61.111 0.00 0.00 0.00 5.03
284 285 0.807667 CTCAGGGGCATTTCGTCGAG 60.808 60.000 0.00 0.00 0.00 4.04
285 286 1.218047 CTCAGGGGCATTTCGTCGA 59.782 57.895 0.00 0.00 0.00 4.20
286 287 1.084370 GTCTCAGGGGCATTTCGTCG 61.084 60.000 0.00 0.00 0.00 5.12
287 288 0.250513 AGTCTCAGGGGCATTTCGTC 59.749 55.000 0.00 0.00 0.00 4.20
288 289 0.250513 GAGTCTCAGGGGCATTTCGT 59.749 55.000 0.00 0.00 0.00 3.85
289 290 0.250234 TGAGTCTCAGGGGCATTTCG 59.750 55.000 0.00 0.00 0.00 3.46
290 291 1.556911 TCTGAGTCTCAGGGGCATTTC 59.443 52.381 26.16 0.00 44.39 2.17
291 292 1.558756 CTCTGAGTCTCAGGGGCATTT 59.441 52.381 26.16 0.00 41.25 2.32
292 293 1.202330 CTCTGAGTCTCAGGGGCATT 58.798 55.000 26.16 0.00 41.25 3.56
293 294 2.913463 CTCTGAGTCTCAGGGGCAT 58.087 57.895 26.16 0.00 41.25 4.40
294 295 4.449638 CTCTGAGTCTCAGGGGCA 57.550 61.111 26.16 9.05 41.25 5.36
297 298 1.034838 CGTCCCTCTGAGTCTCAGGG 61.035 65.000 26.16 23.81 44.51 4.45
298 299 0.322997 ACGTCCCTCTGAGTCTCAGG 60.323 60.000 26.16 17.45 44.39 3.86
299 300 2.011222 GTACGTCCCTCTGAGTCTCAG 58.989 57.143 21.95 21.95 45.59 3.35
300 301 1.350019 TGTACGTCCCTCTGAGTCTCA 59.650 52.381 1.78 1.78 0.00 3.27
301 302 2.011222 CTGTACGTCCCTCTGAGTCTC 58.989 57.143 3.66 0.00 0.00 3.36
302 303 1.340211 CCTGTACGTCCCTCTGAGTCT 60.340 57.143 3.66 0.00 0.00 3.24
303 304 1.096416 CCTGTACGTCCCTCTGAGTC 58.904 60.000 3.66 0.00 0.00 3.36
304 305 0.404812 ACCTGTACGTCCCTCTGAGT 59.595 55.000 3.66 0.00 0.00 3.41
305 306 2.015587 GTACCTGTACGTCCCTCTGAG 58.984 57.143 0.00 0.00 0.00 3.35
306 307 1.340405 GGTACCTGTACGTCCCTCTGA 60.340 57.143 4.06 0.00 36.94 3.27
307 308 1.101331 GGTACCTGTACGTCCCTCTG 58.899 60.000 4.06 0.00 36.94 3.35
308 309 0.998145 AGGTACCTGTACGTCCCTCT 59.002 55.000 15.42 0.00 36.94 3.69
309 310 1.844687 AAGGTACCTGTACGTCCCTC 58.155 55.000 17.14 0.00 36.94 4.30
310 311 2.621668 GGTAAGGTACCTGTACGTCCCT 60.622 54.545 17.14 0.00 45.52 4.20
311 312 1.751351 GGTAAGGTACCTGTACGTCCC 59.249 57.143 17.14 4.20 45.52 4.46
318 319 7.127339 ATGATGTCATTAAGGTAAGGTACCTGT 59.873 37.037 17.14 8.46 45.70 4.00
319 320 7.509546 ATGATGTCATTAAGGTAAGGTACCTG 58.490 38.462 17.14 0.00 45.70 4.00
321 322 7.990886 TGAATGATGTCATTAAGGTAAGGTACC 59.009 37.037 2.73 2.73 45.72 3.34
322 323 8.958119 TGAATGATGTCATTAAGGTAAGGTAC 57.042 34.615 8.14 0.00 45.72 3.34
323 324 8.768397 ACTGAATGATGTCATTAAGGTAAGGTA 58.232 33.333 19.48 0.00 45.20 3.08
324 325 7.633789 ACTGAATGATGTCATTAAGGTAAGGT 58.366 34.615 19.48 1.43 45.20 3.50
325 326 9.784531 ATACTGAATGATGTCATTAAGGTAAGG 57.215 33.333 19.48 0.93 45.20 2.69
328 329 9.546428 CACATACTGAATGATGTCATTAAGGTA 57.454 33.333 19.48 15.70 45.20 3.08
329 330 7.012704 GCACATACTGAATGATGTCATTAAGGT 59.987 37.037 19.48 14.52 45.20 3.50
330 331 7.228108 AGCACATACTGAATGATGTCATTAAGG 59.772 37.037 19.48 10.77 45.20 2.69
331 332 8.068380 CAGCACATACTGAATGATGTCATTAAG 58.932 37.037 15.53 15.53 45.72 1.85
332 333 7.553760 ACAGCACATACTGAATGATGTCATTAA 59.446 33.333 8.14 0.76 45.72 1.40
333 334 7.011669 CACAGCACATACTGAATGATGTCATTA 59.988 37.037 8.14 0.00 45.72 1.90
335 336 5.296035 CACAGCACATACTGAATGATGTCAT 59.704 40.000 0.00 0.00 40.25 3.06
336 337 4.632688 CACAGCACATACTGAATGATGTCA 59.367 41.667 0.00 0.00 40.25 3.58
337 338 4.495349 GCACAGCACATACTGAATGATGTC 60.495 45.833 0.00 0.00 40.25 3.06
338 339 3.376234 GCACAGCACATACTGAATGATGT 59.624 43.478 0.00 0.00 40.25 3.06
339 340 3.545426 CGCACAGCACATACTGAATGATG 60.545 47.826 0.00 0.00 40.25 3.07
340 341 2.610833 CGCACAGCACATACTGAATGAT 59.389 45.455 0.00 0.00 40.25 2.45
341 342 2.001872 CGCACAGCACATACTGAATGA 58.998 47.619 0.00 0.00 40.25 2.57
342 343 2.447089 CGCACAGCACATACTGAATG 57.553 50.000 0.00 0.00 40.25 2.67
354 355 1.689352 GAATGCCAAATGCGCACAGC 61.689 55.000 14.90 14.27 45.60 4.40
355 356 0.108992 AGAATGCCAAATGCGCACAG 60.109 50.000 14.90 5.23 45.60 3.66
356 357 0.317799 AAGAATGCCAAATGCGCACA 59.682 45.000 14.90 6.07 45.60 4.57
357 358 0.717224 CAAGAATGCCAAATGCGCAC 59.283 50.000 14.90 0.00 45.60 5.34
358 359 3.125200 CAAGAATGCCAAATGCGCA 57.875 47.368 14.96 14.96 45.60 6.09
369 370 2.995939 TCAGTGTTCTAGCGCAAGAATG 59.004 45.455 11.47 3.46 37.78 2.67
370 371 3.056536 TCTCAGTGTTCTAGCGCAAGAAT 60.057 43.478 11.47 0.00 37.78 2.40
371 372 2.296190 TCTCAGTGTTCTAGCGCAAGAA 59.704 45.455 11.47 0.00 43.02 2.52
372 373 1.886542 TCTCAGTGTTCTAGCGCAAGA 59.113 47.619 11.47 0.00 43.02 3.02
373 374 2.354109 TCTCAGTGTTCTAGCGCAAG 57.646 50.000 11.47 0.00 43.44 4.01
374 375 2.223947 TGTTCTCAGTGTTCTAGCGCAA 60.224 45.455 11.47 0.00 0.00 4.85
375 376 1.339929 TGTTCTCAGTGTTCTAGCGCA 59.660 47.619 11.47 0.00 0.00 6.09
376 377 2.065993 TGTTCTCAGTGTTCTAGCGC 57.934 50.000 0.00 0.00 0.00 5.92
377 378 3.430218 CCTTTGTTCTCAGTGTTCTAGCG 59.570 47.826 0.00 0.00 0.00 4.26
378 379 4.381411 ACCTTTGTTCTCAGTGTTCTAGC 58.619 43.478 0.00 0.00 0.00 3.42
379 380 6.532365 GAACCTTTGTTCTCAGTGTTCTAG 57.468 41.667 0.00 0.00 46.03 2.43
392 393 4.331968 TGTGTTGTCTCTGAACCTTTGTT 58.668 39.130 0.00 0.00 37.42 2.83
393 394 3.950397 TGTGTTGTCTCTGAACCTTTGT 58.050 40.909 0.00 0.00 0.00 2.83
394 395 4.963276 TTGTGTTGTCTCTGAACCTTTG 57.037 40.909 0.00 0.00 0.00 2.77
395 396 4.142381 GCTTTGTGTTGTCTCTGAACCTTT 60.142 41.667 0.00 0.00 0.00 3.11
396 397 3.378427 GCTTTGTGTTGTCTCTGAACCTT 59.622 43.478 0.00 0.00 0.00 3.50
397 398 2.945668 GCTTTGTGTTGTCTCTGAACCT 59.054 45.455 0.00 0.00 0.00 3.50
398 399 2.945668 AGCTTTGTGTTGTCTCTGAACC 59.054 45.455 0.00 0.00 0.00 3.62
399 400 3.002759 GGAGCTTTGTGTTGTCTCTGAAC 59.997 47.826 0.00 0.00 0.00 3.18
400 401 3.206150 GGAGCTTTGTGTTGTCTCTGAA 58.794 45.455 0.00 0.00 0.00 3.02
401 402 2.485479 GGGAGCTTTGTGTTGTCTCTGA 60.485 50.000 0.00 0.00 0.00 3.27
402 403 1.876156 GGGAGCTTTGTGTTGTCTCTG 59.124 52.381 0.00 0.00 0.00 3.35
403 404 1.541233 CGGGAGCTTTGTGTTGTCTCT 60.541 52.381 0.00 0.00 0.00 3.10
404 405 0.868406 CGGGAGCTTTGTGTTGTCTC 59.132 55.000 0.00 0.00 0.00 3.36
405 406 3.006672 CGGGAGCTTTGTGTTGTCT 57.993 52.632 0.00 0.00 0.00 3.41
424 425 2.999355 CTCTTCTTTTTCTGAGCGGGAG 59.001 50.000 0.00 0.00 0.00 4.30
425 426 2.632996 TCTCTTCTTTTTCTGAGCGGGA 59.367 45.455 0.00 0.00 0.00 5.14
426 427 2.739379 GTCTCTTCTTTTTCTGAGCGGG 59.261 50.000 0.00 0.00 0.00 6.13
427 428 2.739379 GGTCTCTTCTTTTTCTGAGCGG 59.261 50.000 0.00 0.00 0.00 5.52
428 429 3.185391 GTGGTCTCTTCTTTTTCTGAGCG 59.815 47.826 0.00 0.00 0.00 5.03
429 430 4.384940 AGTGGTCTCTTCTTTTTCTGAGC 58.615 43.478 0.00 0.00 0.00 4.26
450 451 7.371936 ACTGTAACTGCTTACTCAAGTTAGAG 58.628 38.462 14.05 14.05 40.15 2.43
451 452 7.286215 ACTGTAACTGCTTACTCAAGTTAGA 57.714 36.000 0.56 0.00 34.38 2.10
452 453 7.948278 AACTGTAACTGCTTACTCAAGTTAG 57.052 36.000 0.00 0.00 34.38 2.34
453 454 8.726870 AAAACTGTAACTGCTTACTCAAGTTA 57.273 30.769 0.00 0.00 30.74 2.24
454 455 7.625828 AAAACTGTAACTGCTTACTCAAGTT 57.374 32.000 0.00 0.00 32.17 2.66
455 456 7.415206 CCAAAAACTGTAACTGCTTACTCAAGT 60.415 37.037 0.00 0.00 34.38 3.16
456 457 6.912591 CCAAAAACTGTAACTGCTTACTCAAG 59.087 38.462 0.00 0.00 34.38 3.02
457 458 6.376018 ACCAAAAACTGTAACTGCTTACTCAA 59.624 34.615 0.00 0.00 34.38 3.02
458 459 5.883673 ACCAAAAACTGTAACTGCTTACTCA 59.116 36.000 0.00 0.00 34.38 3.41
459 460 6.373186 ACCAAAAACTGTAACTGCTTACTC 57.627 37.500 0.00 0.00 34.38 2.59
460 461 8.349983 CAATACCAAAAACTGTAACTGCTTACT 58.650 33.333 0.00 0.00 34.38 2.24
461 462 7.114388 GCAATACCAAAAACTGTAACTGCTTAC 59.886 37.037 0.00 0.00 31.91 2.34
462 463 7.013846 AGCAATACCAAAAACTGTAACTGCTTA 59.986 33.333 0.00 0.00 37.10 3.09
463 464 5.983118 GCAATACCAAAAACTGTAACTGCTT 59.017 36.000 0.00 0.00 31.91 3.91
464 465 5.301805 AGCAATACCAAAAACTGTAACTGCT 59.698 36.000 0.00 0.00 36.32 4.24
465 466 5.528870 AGCAATACCAAAAACTGTAACTGC 58.471 37.500 0.00 0.00 33.45 4.40
466 467 7.081976 GGTAGCAATACCAAAAACTGTAACTG 58.918 38.462 0.00 0.00 39.85 3.16
467 468 6.773685 TGGTAGCAATACCAAAAACTGTAACT 59.226 34.615 4.67 0.00 46.26 2.24
468 469 6.972722 TGGTAGCAATACCAAAAACTGTAAC 58.027 36.000 4.67 0.00 46.26 2.50
480 481 3.760580 AGCATCTCTGGTAGCAATACC 57.239 47.619 0.00 0.00 40.48 2.73
481 482 5.174395 CCATAGCATCTCTGGTAGCAATAC 58.826 45.833 0.00 0.00 38.65 1.89
482 483 4.323028 GCCATAGCATCTCTGGTAGCAATA 60.323 45.833 0.00 0.00 38.65 1.90
483 484 3.558746 GCCATAGCATCTCTGGTAGCAAT 60.559 47.826 0.00 0.00 38.65 3.56
484 485 2.224378 GCCATAGCATCTCTGGTAGCAA 60.224 50.000 0.00 0.00 38.65 3.91
485 486 1.345741 GCCATAGCATCTCTGGTAGCA 59.654 52.381 0.00 0.00 38.65 3.49
486 487 1.338579 GGCCATAGCATCTCTGGTAGC 60.339 57.143 0.00 0.00 42.56 3.58
487 488 2.255406 AGGCCATAGCATCTCTGGTAG 58.745 52.381 5.01 0.00 42.56 3.18
488 489 2.405618 AGGCCATAGCATCTCTGGTA 57.594 50.000 5.01 0.00 42.56 3.25
489 490 1.516110 AAGGCCATAGCATCTCTGGT 58.484 50.000 5.01 0.00 42.56 4.00
490 491 3.777106 TTAAGGCCATAGCATCTCTGG 57.223 47.619 5.01 0.00 42.56 3.86
491 492 5.163281 AGATTAAGGCCATAGCATCTCTG 57.837 43.478 5.01 0.00 42.56 3.35
492 493 4.224818 GGAGATTAAGGCCATAGCATCTCT 59.775 45.833 20.94 7.28 41.34 3.10
493 494 4.512484 GGAGATTAAGGCCATAGCATCTC 58.488 47.826 16.42 16.42 41.08 2.75
494 495 3.265479 GGGAGATTAAGGCCATAGCATCT 59.735 47.826 5.01 3.44 42.56 2.90
495 496 3.009473 TGGGAGATTAAGGCCATAGCATC 59.991 47.826 5.01 0.00 42.56 3.91
496 497 2.988859 TGGGAGATTAAGGCCATAGCAT 59.011 45.455 5.01 0.00 42.56 3.79
497 498 2.373169 CTGGGAGATTAAGGCCATAGCA 59.627 50.000 5.01 0.00 42.56 3.49
498 499 2.639839 TCTGGGAGATTAAGGCCATAGC 59.360 50.000 5.01 0.00 38.76 2.97
499 500 3.008485 GGTCTGGGAGATTAAGGCCATAG 59.992 52.174 5.01 0.00 35.68 2.23
500 501 2.979678 GGTCTGGGAGATTAAGGCCATA 59.020 50.000 5.01 0.00 35.68 2.74
501 502 1.777272 GGTCTGGGAGATTAAGGCCAT 59.223 52.381 5.01 0.00 35.68 4.40
502 503 1.213296 GGTCTGGGAGATTAAGGCCA 58.787 55.000 5.01 0.00 35.68 5.36
503 504 1.134068 GTGGTCTGGGAGATTAAGGCC 60.134 57.143 0.00 0.00 36.19 5.19
504 505 1.134068 GGTGGTCTGGGAGATTAAGGC 60.134 57.143 0.00 0.00 0.00 4.35
505 506 1.490910 GGGTGGTCTGGGAGATTAAGG 59.509 57.143 0.00 0.00 0.00 2.69
506 507 2.196595 TGGGTGGTCTGGGAGATTAAG 58.803 52.381 0.00 0.00 0.00 1.85
507 508 2.352561 TGGGTGGTCTGGGAGATTAA 57.647 50.000 0.00 0.00 0.00 1.40
508 509 2.587060 ATGGGTGGTCTGGGAGATTA 57.413 50.000 0.00 0.00 0.00 1.75
509 510 2.127708 GTATGGGTGGTCTGGGAGATT 58.872 52.381 0.00 0.00 0.00 2.40
510 511 1.295292 AGTATGGGTGGTCTGGGAGAT 59.705 52.381 0.00 0.00 0.00 2.75
511 512 0.716591 AGTATGGGTGGTCTGGGAGA 59.283 55.000 0.00 0.00 0.00 3.71
512 513 0.833287 CAGTATGGGTGGTCTGGGAG 59.167 60.000 0.00 0.00 0.00 4.30
513 514 1.271840 GCAGTATGGGTGGTCTGGGA 61.272 60.000 0.00 0.00 35.86 4.37
514 515 1.224592 GCAGTATGGGTGGTCTGGG 59.775 63.158 0.00 0.00 35.86 4.45
515 516 0.179000 GAGCAGTATGGGTGGTCTGG 59.821 60.000 0.00 0.00 38.99 3.86
516 517 0.904649 TGAGCAGTATGGGTGGTCTG 59.095 55.000 4.16 0.00 41.92 3.51
517 518 1.487976 CATGAGCAGTATGGGTGGTCT 59.512 52.381 4.16 0.00 41.92 3.85
518 519 1.486310 TCATGAGCAGTATGGGTGGTC 59.514 52.381 0.00 0.00 41.79 4.02
519 520 1.583556 TCATGAGCAGTATGGGTGGT 58.416 50.000 0.00 0.00 35.86 4.16
520 521 2.715749 TTCATGAGCAGTATGGGTGG 57.284 50.000 0.00 0.00 35.86 4.61
521 522 4.201657 TCATTTCATGAGCAGTATGGGTG 58.798 43.478 0.00 0.00 32.56 4.61
522 523 4.508551 TCATTTCATGAGCAGTATGGGT 57.491 40.909 0.00 0.00 32.56 4.51
523 524 5.840243 TTTCATTTCATGAGCAGTATGGG 57.160 39.130 0.00 0.00 40.94 4.00
524 525 7.485810 TGATTTTCATTTCATGAGCAGTATGG 58.514 34.615 0.00 0.00 40.94 2.74
554 555 7.482169 TTGATACAGTAATGAAGACCAGTCT 57.518 36.000 0.00 0.00 42.75 3.24
555 556 8.723942 ATTTGATACAGTAATGAAGACCAGTC 57.276 34.615 0.00 0.00 0.00 3.51
561 562 9.832445 GGGTCTAATTTGATACAGTAATGAAGA 57.168 33.333 0.00 0.00 0.00 2.87
562 563 9.057089 GGGGTCTAATTTGATACAGTAATGAAG 57.943 37.037 0.00 0.00 0.00 3.02
563 564 8.778059 AGGGGTCTAATTTGATACAGTAATGAA 58.222 33.333 0.00 0.00 0.00 2.57
564 565 8.331931 AGGGGTCTAATTTGATACAGTAATGA 57.668 34.615 0.00 0.00 0.00 2.57
565 566 8.432805 AGAGGGGTCTAATTTGATACAGTAATG 58.567 37.037 0.00 0.00 0.00 1.90
566 567 8.568617 AGAGGGGTCTAATTTGATACAGTAAT 57.431 34.615 0.00 0.00 0.00 1.89
567 568 7.989947 AGAGGGGTCTAATTTGATACAGTAA 57.010 36.000 0.00 0.00 0.00 2.24
568 569 7.989947 AAGAGGGGTCTAATTTGATACAGTA 57.010 36.000 0.00 0.00 0.00 2.74
582 583 5.342866 AGTGTTATGTTCTAAGAGGGGTCT 58.657 41.667 0.00 0.00 0.00 3.85
590 591 6.923508 TGTGTGAGTGAGTGTTATGTTCTAAG 59.076 38.462 0.00 0.00 0.00 2.18
594 595 4.084328 GCTGTGTGAGTGAGTGTTATGTTC 60.084 45.833 0.00 0.00 0.00 3.18
599 600 3.535280 TTGCTGTGTGAGTGAGTGTTA 57.465 42.857 0.00 0.00 0.00 2.41
600 601 2.401583 TTGCTGTGTGAGTGAGTGTT 57.598 45.000 0.00 0.00 0.00 3.32
601 602 2.627515 ATTGCTGTGTGAGTGAGTGT 57.372 45.000 0.00 0.00 0.00 3.55
602 603 3.657634 AGTATTGCTGTGTGAGTGAGTG 58.342 45.455 0.00 0.00 0.00 3.51
603 604 5.468540 TTAGTATTGCTGTGTGAGTGAGT 57.531 39.130 0.00 0.00 0.00 3.41
604 605 6.336566 AGATTAGTATTGCTGTGTGAGTGAG 58.663 40.000 0.00 0.00 0.00 3.51
605 606 6.071391 TGAGATTAGTATTGCTGTGTGAGTGA 60.071 38.462 0.00 0.00 0.00 3.41
606 607 6.101997 TGAGATTAGTATTGCTGTGTGAGTG 58.898 40.000 0.00 0.00 0.00 3.51
607 608 6.286240 TGAGATTAGTATTGCTGTGTGAGT 57.714 37.500 0.00 0.00 0.00 3.41
608 609 7.332926 ACTTTGAGATTAGTATTGCTGTGTGAG 59.667 37.037 0.00 0.00 0.00 3.51
609 610 7.161404 ACTTTGAGATTAGTATTGCTGTGTGA 58.839 34.615 0.00 0.00 0.00 3.58
630 631 9.936759 CTGAGGAAGTTAAGAGATAAGAACTTT 57.063 33.333 0.00 0.00 41.10 2.66
655 656 8.043710 CAGATGGGTTAATACTTGAGAGAAACT 58.956 37.037 0.00 0.00 0.00 2.66
656 657 7.824779 ACAGATGGGTTAATACTTGAGAGAAAC 59.175 37.037 0.00 0.00 0.00 2.78
657 658 7.918076 ACAGATGGGTTAATACTTGAGAGAAA 58.082 34.615 0.00 0.00 0.00 2.52
658 659 7.496346 ACAGATGGGTTAATACTTGAGAGAA 57.504 36.000 0.00 0.00 0.00 2.87
659 660 7.400339 AGAACAGATGGGTTAATACTTGAGAGA 59.600 37.037 0.00 0.00 0.00 3.10
660 661 7.493971 CAGAACAGATGGGTTAATACTTGAGAG 59.506 40.741 0.00 0.00 0.00 3.20
661 662 7.331026 CAGAACAGATGGGTTAATACTTGAGA 58.669 38.462 0.00 0.00 0.00 3.27
662 663 6.037610 GCAGAACAGATGGGTTAATACTTGAG 59.962 42.308 0.00 0.00 0.00 3.02
668 669 6.313519 AGAAGCAGAACAGATGGGTTAATA 57.686 37.500 0.00 0.00 0.00 0.98
669 670 5.184892 AGAAGCAGAACAGATGGGTTAAT 57.815 39.130 0.00 0.00 0.00 1.40
676 677 8.442632 TGGAAAATATAGAAGCAGAACAGATG 57.557 34.615 0.00 0.00 0.00 2.90
704 705 6.675000 GCGTGCAGCTCATTTAATGGAACA 62.675 45.833 5.02 0.00 43.93 3.18
705 706 3.429085 CGTGCAGCTCATTTAATGGAAC 58.571 45.455 5.02 0.00 0.00 3.62
721 722 0.587768 CATGTGAGAAGTTGCGTGCA 59.412 50.000 0.00 0.00 0.00 4.57
726 727 2.771089 TGGACTCATGTGAGAAGTTGC 58.229 47.619 16.41 0.59 44.74 4.17
752 753 4.451096 ACAGATTATTTTGCTGTCGACGTT 59.549 37.500 11.62 0.00 38.41 3.99
753 754 3.994392 ACAGATTATTTTGCTGTCGACGT 59.006 39.130 11.62 0.00 38.41 4.34
754 755 4.569029 GACAGATTATTTTGCTGTCGACG 58.431 43.478 11.62 7.05 45.99 5.12
759 760 7.435068 AAACTACGACAGATTATTTTGCTGT 57.565 32.000 0.00 0.00 44.87 4.40
762 763 9.262472 CTTGTAAACTACGACAGATTATTTTGC 57.738 33.333 0.00 0.00 0.00 3.68
772 773 3.673809 GTGCTCCTTGTAAACTACGACAG 59.326 47.826 0.00 0.00 0.00 3.51
776 777 3.034721 TGGTGCTCCTTGTAAACTACG 57.965 47.619 6.34 0.00 34.23 3.51
777 778 3.751698 CCTTGGTGCTCCTTGTAAACTAC 59.248 47.826 6.34 0.00 34.23 2.73
780 781 2.858745 TCCTTGGTGCTCCTTGTAAAC 58.141 47.619 6.34 0.00 34.23 2.01
782 783 3.806949 ATTCCTTGGTGCTCCTTGTAA 57.193 42.857 6.34 0.00 34.23 2.41
783 784 3.844211 AGTATTCCTTGGTGCTCCTTGTA 59.156 43.478 6.34 0.00 34.23 2.41
785 786 3.356529 AGTATTCCTTGGTGCTCCTTG 57.643 47.619 6.34 0.00 34.23 3.61
790 791 7.573710 TGTATTCATAAGTATTCCTTGGTGCT 58.426 34.615 0.00 0.00 34.46 4.40
792 793 8.840321 CCTTGTATTCATAAGTATTCCTTGGTG 58.160 37.037 0.00 0.00 34.46 4.17
793 794 8.557450 ACCTTGTATTCATAAGTATTCCTTGGT 58.443 33.333 0.00 0.00 34.46 3.67
811 812 6.174760 TGCGTTGGTTATTTCTACCTTGTAT 58.825 36.000 0.00 0.00 36.60 2.29
818 819 3.682858 TGCTCTGCGTTGGTTATTTCTAC 59.317 43.478 0.00 0.00 0.00 2.59
819 820 3.682858 GTGCTCTGCGTTGGTTATTTCTA 59.317 43.478 0.00 0.00 0.00 2.10
833 834 3.488978 CGCTCAGCTGTGCTCTGC 61.489 66.667 31.37 17.54 36.40 4.26
844 845 5.991328 TTCCAATTTAATAGCTCGCTCAG 57.009 39.130 0.00 0.00 0.00 3.35
845 846 5.470098 GGATTCCAATTTAATAGCTCGCTCA 59.530 40.000 0.00 0.00 0.00 4.26
858 860 4.065214 ACCTGGATGTGGATTCCAATTT 57.935 40.909 7.05 0.00 42.56 1.82
873 875 0.843309 TGTCTTTCAGCCAACCTGGA 59.157 50.000 0.00 0.00 40.96 3.86
875 877 2.149578 CTCTGTCTTTCAGCCAACCTG 58.850 52.381 0.00 0.00 43.32 4.00
878 880 1.534595 CTGCTCTGTCTTTCAGCCAAC 59.465 52.381 0.00 0.00 43.32 3.77
905 934 4.555511 GCGCAAGAAAATCCTAGCATAAGG 60.556 45.833 0.30 0.00 43.02 2.69
911 940 2.009774 TGAGCGCAAGAAAATCCTAGC 58.990 47.619 11.47 0.00 43.02 3.42
915 944 0.179189 CGGTGAGCGCAAGAAAATCC 60.179 55.000 11.47 0.00 43.02 3.01
943 972 3.888930 GTGTTGACTGAATTTCCCAGGAA 59.111 43.478 0.00 0.00 36.03 3.36
944 973 3.138283 AGTGTTGACTGAATTTCCCAGGA 59.862 43.478 0.00 0.00 36.03 3.86
946 975 4.794003 GCAAGTGTTGACTGAATTTCCCAG 60.794 45.833 0.00 0.00 37.64 4.45
954 984 2.288666 GGTGAGCAAGTGTTGACTGAA 58.711 47.619 0.00 0.00 30.61 3.02
966 996 1.211703 TCAAGGACAACTGGTGAGCAA 59.788 47.619 0.00 0.00 0.00 3.91
967 997 0.836606 TCAAGGACAACTGGTGAGCA 59.163 50.000 0.00 0.00 0.00 4.26
970 1000 1.142667 TGCATCAAGGACAACTGGTGA 59.857 47.619 0.00 0.00 0.00 4.02
971 1001 1.538512 CTGCATCAAGGACAACTGGTG 59.461 52.381 0.00 0.00 0.00 4.17
972 1002 1.421268 TCTGCATCAAGGACAACTGGT 59.579 47.619 0.00 0.00 0.00 4.00
973 1003 2.189594 TCTGCATCAAGGACAACTGG 57.810 50.000 0.00 0.00 0.00 4.00
974 1004 3.374367 CAGATCTGCATCAAGGACAACTG 59.626 47.826 10.38 0.00 0.00 3.16
997 1029 1.849977 ATATGGGTGTTGTGCATGCA 58.150 45.000 18.46 18.46 0.00 3.96
1001 1033 3.660970 ATGGTATATGGGTGTTGTGCA 57.339 42.857 0.00 0.00 0.00 4.57
1002 1034 4.644685 AGAAATGGTATATGGGTGTTGTGC 59.355 41.667 0.00 0.00 0.00 4.57
1008 1040 5.471456 GCAGAAGAGAAATGGTATATGGGTG 59.529 44.000 0.00 0.00 0.00 4.61
1009 1041 5.132648 TGCAGAAGAGAAATGGTATATGGGT 59.867 40.000 0.00 0.00 0.00 4.51
1057 1093 1.003355 CTCCCAACTCACACCGCAT 60.003 57.895 0.00 0.00 0.00 4.73
1059 1095 3.050275 GCTCCCAACTCACACCGC 61.050 66.667 0.00 0.00 0.00 5.68
1061 1097 2.331265 GTTGCTCCCAACTCACACC 58.669 57.895 0.00 0.00 46.13 4.16
1182 2321 2.418910 CCGCTCCAGGATCTCACGT 61.419 63.158 0.00 0.00 0.00 4.49
1200 2339 1.664321 CCAAGATGGCTGGCAGCTTC 61.664 60.000 35.73 29.85 41.99 3.86
1227 2366 1.474143 CCTTTCTCCTCCGCATCTTCC 60.474 57.143 0.00 0.00 0.00 3.46
1254 2393 4.742201 GCGCTTGCTCCAGGTCGA 62.742 66.667 0.00 0.00 35.07 4.20
1329 2468 1.728672 CCGGAGAGCCTCGTACTTC 59.271 63.158 0.00 0.00 0.00 3.01
1350 2489 1.741770 CCCTTTCTCCTTGGCGTCG 60.742 63.158 0.00 0.00 0.00 5.12
1365 2504 1.271597 CCAAGCTTCTTGTAGTGCCCT 60.272 52.381 0.00 0.00 0.00 5.19
1395 2534 1.745489 CGCAGGGAACAGGCTTACC 60.745 63.158 0.00 0.00 0.00 2.85
1404 2543 3.670377 GGGTTGTGCGCAGGGAAC 61.670 66.667 12.22 14.28 0.00 3.62
1446 2585 3.491447 GCACAATCCTGCACAACTTCTTT 60.491 43.478 0.00 0.00 37.11 2.52
1513 2652 2.337532 GGCTTGCTGCAGGTGTTG 59.662 61.111 17.12 0.00 45.15 3.33
1567 2707 2.231529 ATCCCTGTCGGAGTCGATTAG 58.768 52.381 0.00 0.00 46.60 1.73
1581 2721 5.839063 TCTGGACCTACTAACAATATCCCTG 59.161 44.000 0.00 0.00 0.00 4.45
1583 2723 6.075984 TCTCTGGACCTACTAACAATATCCC 58.924 44.000 0.00 0.00 0.00 3.85
1620 2760 9.987272 TGATCAATCAATATACTCACGATCTTT 57.013 29.630 0.00 0.00 33.08 2.52
1655 2798 1.846439 GGACAATGAGATCCCTCCCAA 59.154 52.381 0.00 0.00 38.66 4.12
1680 2823 1.360852 AGCCCACCCATTCCAACAATA 59.639 47.619 0.00 0.00 0.00 1.90
1734 2877 1.800805 ACTCCTTGATTGCAGTGTCG 58.199 50.000 0.00 0.00 0.00 4.35
1738 2881 4.922206 TGGAAATACTCCTTGATTGCAGT 58.078 39.130 0.00 0.00 45.64 4.40
1774 2917 5.277490 CGTCAAAATCATCTGACACACAACT 60.277 40.000 3.39 0.00 41.71 3.16
1816 2959 1.184970 TCACGGGTCTGACAGATGCA 61.185 55.000 8.73 0.00 0.00 3.96
1831 2974 2.663602 CCTTGTCACGATCTTTCTCACG 59.336 50.000 0.00 0.00 0.00 4.35
1928 3071 3.066760 CCTGAGTTTTTCCCACTTGTCAC 59.933 47.826 0.00 0.00 0.00 3.67
2199 3348 2.550180 TCTTCGTCTCAGCATAGATCCG 59.450 50.000 0.00 0.00 0.00 4.18
2216 3366 5.065731 CACCCATTCTTTCATGCTAGTCTTC 59.934 44.000 0.00 0.00 0.00 2.87
2381 3531 5.277974 CCATAGCTGGATTAACATTTCCACG 60.278 44.000 0.00 0.00 46.37 4.94
2473 3623 0.895530 TGACCTCCAAGTTAGCTCGG 59.104 55.000 0.00 0.00 0.00 4.63
2524 3674 3.238441 CGGTTCTCGTTCTCTTCTCTTG 58.762 50.000 0.00 0.00 0.00 3.02
2537 3705 5.323105 GTTCTAGTTCTAGAACGGTTCTCG 58.677 45.833 25.51 19.55 44.15 4.04
2548 3716 9.239002 GTATGTTGCATACTGTTCTAGTTCTAG 57.761 37.037 10.90 0.83 40.89 2.43
2549 3717 8.745590 TGTATGTTGCATACTGTTCTAGTTCTA 58.254 33.333 16.93 0.00 40.89 2.10
2550 3718 7.611770 TGTATGTTGCATACTGTTCTAGTTCT 58.388 34.615 16.93 0.00 40.89 3.01
2551 3719 7.827819 TGTATGTTGCATACTGTTCTAGTTC 57.172 36.000 16.93 0.00 40.89 3.01
2552 3720 8.040727 TCATGTATGTTGCATACTGTTCTAGTT 58.959 33.333 16.93 0.00 40.89 2.24
2553 3721 7.555965 TCATGTATGTTGCATACTGTTCTAGT 58.444 34.615 16.93 0.00 43.56 2.57
2637 3805 2.041620 ACAGCTCCTTTTGATTAGGCCA 59.958 45.455 5.01 0.00 32.59 5.36
2672 3840 2.167693 TGAAGTGAACAGGTGACGAGTT 59.832 45.455 0.00 0.00 36.41 3.01
2688 3856 0.036010 CCGCTGAACCCAGATGAAGT 60.036 55.000 0.00 0.00 43.02 3.01
2690 3858 0.690192 TTCCGCTGAACCCAGATGAA 59.310 50.000 0.00 0.00 43.02 2.57
2704 3872 0.532115 ATCATGCAAAAGGGTTCCGC 59.468 50.000 0.00 0.00 0.00 5.54
2742 3910 2.804572 GCAACAGTGTCTGAAGAGCTGA 60.805 50.000 14.92 0.00 35.18 4.26
2779 3950 0.035152 TAATGGTGGTGCTGAGCCTG 60.035 55.000 0.23 0.00 0.00 4.85
2798 3969 4.623167 GCTCGCATATGATTGTACTTCGAT 59.377 41.667 6.97 0.00 0.00 3.59
2814 3985 1.004080 AGAGTTGCAGTGCTCGCAT 60.004 52.632 17.60 0.00 39.58 4.73
2837 4008 4.881850 GGTTGAAGTGGAAGTTCTCTCAAA 59.118 41.667 2.25 0.00 46.43 2.69
2865 4042 6.440647 TCAAGATACCTCAGGTGATGTAAGTT 59.559 38.462 6.61 0.00 36.19 2.66
2873 4050 4.646945 GTGAGATCAAGATACCTCAGGTGA 59.353 45.833 6.61 0.00 36.19 4.02
2895 4072 9.178758 GGGAAGATATTTGATAGAACTGTTTGT 57.821 33.333 0.00 0.00 0.00 2.83
2913 4096 6.073447 TGTGCTTATTTCCTTGGGAAGATA 57.927 37.500 0.00 0.03 43.06 1.98
2915 4098 4.380843 TGTGCTTATTTCCTTGGGAAGA 57.619 40.909 0.00 0.00 43.06 2.87
2966 4149 3.684788 GTCAACCAAGTCTCGTGCAATAT 59.315 43.478 0.00 0.00 0.00 1.28
3021 4204 7.234577 TGTGCATCCATTAGTATATAGGTGACA 59.765 37.037 0.00 0.00 0.00 3.58
3029 4212 8.330993 TCCAATGATGTGCATCCATTAGTATAT 58.669 33.333 9.39 0.00 35.78 0.86
3114 4297 1.115467 CAATCAGGACTAGAGCCCGT 58.885 55.000 0.00 0.00 0.00 5.28
3179 4362 8.608317 GTTACATATTCAAGAGAAGAAAGCTCC 58.392 37.037 0.00 0.00 37.14 4.70
3190 4373 8.549548 CATGCTCTTCAGTTACATATTCAAGAG 58.450 37.037 0.00 0.00 38.84 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.