Multiple sequence alignment - TraesCS1B01G466500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G466500 chr1B 100.000 6714 0 0 1 6714 676850803 676857516 0.000000e+00 12399.0
1 TraesCS1B01G466500 chr1B 86.032 3909 496 34 948 4831 676949743 676953626 0.000000e+00 4148.0
2 TraesCS1B01G466500 chr1B 84.737 4049 567 32 862 4883 676809919 676813943 0.000000e+00 4006.0
3 TraesCS1B01G466500 chr1B 82.002 3867 588 73 1076 4905 29823923 29827718 0.000000e+00 3186.0
4 TraesCS1B01G466500 chr1B 81.057 3653 651 25 1115 4738 29898369 29902009 0.000000e+00 2874.0
5 TraesCS1B01G466500 chr1B 97.893 1614 29 2 5101 6714 567727092 567728700 0.000000e+00 2787.0
6 TraesCS1B01G466500 chr1B 80.776 2965 504 47 1977 4905 29085866 29088800 0.000000e+00 2257.0
7 TraesCS1B01G466500 chr1B 90.862 766 31 12 5 762 676808090 676808824 0.000000e+00 990.0
8 TraesCS1B01G466500 chr1B 89.333 300 22 3 862 1161 676808835 676809124 1.060000e-97 368.0
9 TraesCS1B01G466500 chr1D 84.545 3921 519 50 1017 4910 486116065 486119925 0.000000e+00 3803.0
10 TraesCS1B01G466500 chr1D 82.389 3725 584 58 1115 4797 19341276 19344970 0.000000e+00 3179.0
11 TraesCS1B01G466500 chr1D 81.515 3484 588 40 1132 4597 19807295 19810740 0.000000e+00 2815.0
12 TraesCS1B01G466500 chr1D 90.533 507 44 4 204 708 10971864 10972368 0.000000e+00 667.0
13 TraesCS1B01G466500 chr1D 92.913 127 3 5 20 141 10971745 10971870 5.350000e-41 180.0
14 TraesCS1B01G466500 chrUn 81.395 3827 647 54 1113 4906 116819384 116823178 0.000000e+00 3062.0
15 TraesCS1B01G466500 chrUn 81.088 3548 630 25 1220 4738 180337352 180340887 0.000000e+00 2796.0
16 TraesCS1B01G466500 chrUn 79.783 3680 699 33 1134 4789 116836679 116840337 0.000000e+00 2632.0
17 TraesCS1B01G466500 chrUn 81.299 385 70 2 3865 4248 304673709 304673326 1.820000e-80 311.0
18 TraesCS1B01G466500 chr5B 97.977 1681 33 1 5035 6714 568815942 568814262 0.000000e+00 2915.0
19 TraesCS1B01G466500 chr5B 97.952 1611 30 1 5107 6714 635783205 635784815 0.000000e+00 2789.0
20 TraesCS1B01G466500 chr3B 97.628 1686 36 2 5031 6714 667641757 667640074 0.000000e+00 2889.0
21 TraesCS1B01G466500 chr3B 91.075 493 41 3 217 708 549489262 549489752 0.000000e+00 664.0
22 TraesCS1B01G466500 chr3B 92.126 127 4 5 20 141 549489129 549489254 2.490000e-39 174.0
23 TraesCS1B01G466500 chr4A 98.265 1614 25 3 5102 6714 673162781 673164392 0.000000e+00 2822.0
24 TraesCS1B01G466500 chr4A 89.899 495 46 3 217 708 455260551 455261044 9.500000e-178 634.0
25 TraesCS1B01G466500 chr2B 97.926 1591 32 1 5124 6714 662576513 662574924 0.000000e+00 2754.0
26 TraesCS1B01G466500 chr2B 96.891 1608 48 2 5107 6714 788604676 788603071 0.000000e+00 2691.0
27 TraesCS1B01G466500 chr7B 97.055 1630 47 1 5085 6714 629996092 629994464 0.000000e+00 2743.0
28 TraesCS1B01G466500 chr7B 92.126 127 4 5 20 141 300127697 300127822 2.490000e-39 174.0
29 TraesCS1B01G466500 chr6B 97.224 1621 43 2 5094 6714 572507823 572509441 0.000000e+00 2743.0
30 TraesCS1B01G466500 chr6B 89.640 222 21 2 488 708 4893349 4893129 1.430000e-71 281.0
31 TraesCS1B01G466500 chr1A 92.978 1709 87 10 5034 6714 541074757 541076460 0.000000e+00 2460.0
32 TraesCS1B01G466500 chr1A 80.070 2579 462 35 2361 4906 21076955 21079514 0.000000e+00 1868.0
33 TraesCS1B01G466500 chr1A 83.685 1091 160 9 1345 2426 21242770 21243851 0.000000e+00 1013.0
34 TraesCS1B01G466500 chr1A 78.993 1390 263 24 3490 4862 21255211 21256588 0.000000e+00 922.0
35 TraesCS1B01G466500 chr1A 73.989 1311 267 51 3344 4626 21235598 21236862 1.320000e-126 464.0
36 TraesCS1B01G466500 chr1A 86.810 326 40 3 2418 2743 21253703 21254025 1.780000e-95 361.0
37 TraesCS1B01G466500 chr2A 92.786 1705 96 12 5034 6712 720315850 720317553 0.000000e+00 2442.0
38 TraesCS1B01G466500 chr6A 92.773 1702 98 5 5036 6714 597904665 597902966 0.000000e+00 2438.0
39 TraesCS1B01G466500 chr5D 91.686 1708 112 8 5035 6714 495290030 495288325 0.000000e+00 2340.0
40 TraesCS1B01G466500 chr5D 90.877 1710 121 14 5031 6714 555505596 555507296 0.000000e+00 2261.0
41 TraesCS1B01G466500 chr5D 92.089 493 37 2 217 708 337128031 337128522 0.000000e+00 693.0
42 TraesCS1B01G466500 chr3D 88.947 1710 147 18 5036 6712 480130088 480131788 0.000000e+00 2073.0
43 TraesCS1B01G466500 chr3D 89.146 1124 92 16 5034 6132 83730719 83731837 0.000000e+00 1373.0
44 TraesCS1B01G466500 chr3D 92.133 483 36 2 227 708 59327944 59328425 0.000000e+00 680.0
45 TraesCS1B01G466500 chr3D 92.126 127 4 5 20 141 98969616 98969741 2.490000e-39 174.0
46 TraesCS1B01G466500 chr3D 93.333 60 4 0 801 860 313603874 313603933 9.270000e-14 89.8
47 TraesCS1B01G466500 chr4D 91.886 493 37 3 217 708 37823050 37822560 0.000000e+00 686.0
48 TraesCS1B01G466500 chr7D 90.872 493 42 3 217 708 55495192 55494702 0.000000e+00 658.0
49 TraesCS1B01G466500 chr7D 90.669 493 43 3 217 708 176395825 176396315 0.000000e+00 652.0
50 TraesCS1B01G466500 chr7D 92.126 127 4 5 20 141 55495325 55495200 2.490000e-39 174.0
51 TraesCS1B01G466500 chr7D 92.126 127 4 5 20 141 227705581 227705456 2.490000e-39 174.0
52 TraesCS1B01G466500 chr7D 92.126 127 4 5 20 141 537569828 537569953 2.490000e-39 174.0
53 TraesCS1B01G466500 chr3A 92.126 127 4 3 20 141 510414326 510414201 2.490000e-39 174.0
54 TraesCS1B01G466500 chr2D 88.235 68 3 5 794 859 169952901 169952965 7.220000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G466500 chr1B 676850803 676857516 6713 False 12399.0 12399 100.000000 1 6714 1 chr1B.!!$F5 6713
1 TraesCS1B01G466500 chr1B 676949743 676953626 3883 False 4148.0 4148 86.032000 948 4831 1 chr1B.!!$F6 3883
2 TraesCS1B01G466500 chr1B 29823923 29827718 3795 False 3186.0 3186 82.002000 1076 4905 1 chr1B.!!$F2 3829
3 TraesCS1B01G466500 chr1B 29898369 29902009 3640 False 2874.0 2874 81.057000 1115 4738 1 chr1B.!!$F3 3623
4 TraesCS1B01G466500 chr1B 567727092 567728700 1608 False 2787.0 2787 97.893000 5101 6714 1 chr1B.!!$F4 1613
5 TraesCS1B01G466500 chr1B 29085866 29088800 2934 False 2257.0 2257 80.776000 1977 4905 1 chr1B.!!$F1 2928
6 TraesCS1B01G466500 chr1B 676808090 676813943 5853 False 1788.0 4006 88.310667 5 4883 3 chr1B.!!$F7 4878
7 TraesCS1B01G466500 chr1D 486116065 486119925 3860 False 3803.0 3803 84.545000 1017 4910 1 chr1D.!!$F3 3893
8 TraesCS1B01G466500 chr1D 19341276 19344970 3694 False 3179.0 3179 82.389000 1115 4797 1 chr1D.!!$F1 3682
9 TraesCS1B01G466500 chr1D 19807295 19810740 3445 False 2815.0 2815 81.515000 1132 4597 1 chr1D.!!$F2 3465
10 TraesCS1B01G466500 chr1D 10971745 10972368 623 False 423.5 667 91.723000 20 708 2 chr1D.!!$F4 688
11 TraesCS1B01G466500 chrUn 116819384 116823178 3794 False 3062.0 3062 81.395000 1113 4906 1 chrUn.!!$F1 3793
12 TraesCS1B01G466500 chrUn 180337352 180340887 3535 False 2796.0 2796 81.088000 1220 4738 1 chrUn.!!$F3 3518
13 TraesCS1B01G466500 chrUn 116836679 116840337 3658 False 2632.0 2632 79.783000 1134 4789 1 chrUn.!!$F2 3655
14 TraesCS1B01G466500 chr5B 568814262 568815942 1680 True 2915.0 2915 97.977000 5035 6714 1 chr5B.!!$R1 1679
15 TraesCS1B01G466500 chr5B 635783205 635784815 1610 False 2789.0 2789 97.952000 5107 6714 1 chr5B.!!$F1 1607
16 TraesCS1B01G466500 chr3B 667640074 667641757 1683 True 2889.0 2889 97.628000 5031 6714 1 chr3B.!!$R1 1683
17 TraesCS1B01G466500 chr3B 549489129 549489752 623 False 419.0 664 91.600500 20 708 2 chr3B.!!$F1 688
18 TraesCS1B01G466500 chr4A 673162781 673164392 1611 False 2822.0 2822 98.265000 5102 6714 1 chr4A.!!$F2 1612
19 TraesCS1B01G466500 chr2B 662574924 662576513 1589 True 2754.0 2754 97.926000 5124 6714 1 chr2B.!!$R1 1590
20 TraesCS1B01G466500 chr2B 788603071 788604676 1605 True 2691.0 2691 96.891000 5107 6714 1 chr2B.!!$R2 1607
21 TraesCS1B01G466500 chr7B 629994464 629996092 1628 True 2743.0 2743 97.055000 5085 6714 1 chr7B.!!$R1 1629
22 TraesCS1B01G466500 chr6B 572507823 572509441 1618 False 2743.0 2743 97.224000 5094 6714 1 chr6B.!!$F1 1620
23 TraesCS1B01G466500 chr1A 541074757 541076460 1703 False 2460.0 2460 92.978000 5034 6714 1 chr1A.!!$F4 1680
24 TraesCS1B01G466500 chr1A 21076955 21079514 2559 False 1868.0 1868 80.070000 2361 4906 1 chr1A.!!$F1 2545
25 TraesCS1B01G466500 chr1A 21242770 21243851 1081 False 1013.0 1013 83.685000 1345 2426 1 chr1A.!!$F3 1081
26 TraesCS1B01G466500 chr1A 21253703 21256588 2885 False 641.5 922 82.901500 2418 4862 2 chr1A.!!$F5 2444
27 TraesCS1B01G466500 chr1A 21235598 21236862 1264 False 464.0 464 73.989000 3344 4626 1 chr1A.!!$F2 1282
28 TraesCS1B01G466500 chr2A 720315850 720317553 1703 False 2442.0 2442 92.786000 5034 6712 1 chr2A.!!$F1 1678
29 TraesCS1B01G466500 chr6A 597902966 597904665 1699 True 2438.0 2438 92.773000 5036 6714 1 chr6A.!!$R1 1678
30 TraesCS1B01G466500 chr5D 495288325 495290030 1705 True 2340.0 2340 91.686000 5035 6714 1 chr5D.!!$R1 1679
31 TraesCS1B01G466500 chr5D 555505596 555507296 1700 False 2261.0 2261 90.877000 5031 6714 1 chr5D.!!$F2 1683
32 TraesCS1B01G466500 chr3D 480130088 480131788 1700 False 2073.0 2073 88.947000 5036 6712 1 chr3D.!!$F5 1676
33 TraesCS1B01G466500 chr3D 83730719 83731837 1118 False 1373.0 1373 89.146000 5034 6132 1 chr3D.!!$F2 1098
34 TraesCS1B01G466500 chr7D 55494702 55495325 623 True 416.0 658 91.499000 20 708 2 chr7D.!!$R2 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 751 0.401738 CTGAACAAGGAGGCCCAAGA 59.598 55.0 0.00 0.0 33.88 3.02 F
1540 2666 0.373370 TATTGTGCGCGTCATTGAGC 59.627 50.0 8.43 0.0 35.03 4.26 F
2195 3337 0.390340 CCAGACGCTGCTGAGCTAAA 60.390 55.0 5.83 0.0 43.77 1.85 F
4123 6346 0.464013 CTGCAGCAAGCTCATAGGCT 60.464 55.0 0.00 0.0 45.94 4.58 F
4636 6868 0.179134 CTCAGCCCTTAAGACGGTCG 60.179 60.0 3.36 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2721 3885 0.542232 AGAACAGGTGGCGAGTAGGT 60.542 55.0 0.0 0.0 0.0 3.08 R
3168 4399 0.117340 AACCAGGAGTAGAGCCCACT 59.883 55.0 0.0 0.0 0.0 4.00 R
4130 6353 0.252197 AGTACGGCATCCTTTCACCC 59.748 55.0 0.0 0.0 0.0 4.61 R
5287 7562 0.546598 CTAGATTGGCGGGGAAAGGT 59.453 55.0 0.0 0.0 0.0 3.50 R
6461 8786 0.898320 GTCTCTGGTCTTAGCCTGCA 59.102 55.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 80 7.195839 AGTTTGAAGAGAATAACAAGCACTC 57.804 36.000 0.00 0.00 0.00 3.51
105 111 4.452455 CACTCTACTTTGGGCAGTTAGTTG 59.548 45.833 0.00 0.00 0.00 3.16
157 163 3.843027 ACTGATGCTAGCTATGGCCTTAT 59.157 43.478 17.23 0.00 39.73 1.73
203 209 1.638529 CCCCTACCCATCTCTGCTAG 58.361 60.000 0.00 0.00 0.00 3.42
204 210 1.148027 CCCCTACCCATCTCTGCTAGA 59.852 57.143 0.00 0.00 39.02 2.43
205 211 2.243810 CCCTACCCATCTCTGCTAGAC 58.756 57.143 0.00 0.00 36.93 2.59
206 212 2.158385 CCCTACCCATCTCTGCTAGACT 60.158 54.545 0.00 0.00 36.93 3.24
207 213 2.890311 CCTACCCATCTCTGCTAGACTG 59.110 54.545 0.00 0.00 36.93 3.51
208 214 1.118838 ACCCATCTCTGCTAGACTGC 58.881 55.000 0.00 0.00 36.93 4.40
209 215 1.342874 ACCCATCTCTGCTAGACTGCT 60.343 52.381 0.00 0.00 36.93 4.24
210 216 2.091610 ACCCATCTCTGCTAGACTGCTA 60.092 50.000 0.00 0.00 36.93 3.49
211 217 2.295909 CCCATCTCTGCTAGACTGCTAC 59.704 54.545 0.00 0.00 36.93 3.58
212 218 2.295909 CCATCTCTGCTAGACTGCTACC 59.704 54.545 0.00 0.00 36.93 3.18
230 236 8.671028 ACTGCTACCCTAAACGTAAATAATTTG 58.329 33.333 0.00 0.00 0.00 2.32
247 253 1.395826 TTGCTGGAACCCAAAACCCG 61.396 55.000 0.00 0.00 30.80 5.28
347 353 0.535335 TCGAGATGGGCACAGGTTAC 59.465 55.000 0.00 0.00 0.00 2.50
468 474 2.221169 TGATGGATCGTATTGGCTTGC 58.779 47.619 0.00 0.00 0.00 4.01
472 478 1.873591 GGATCGTATTGGCTTGCGATT 59.126 47.619 13.06 1.35 42.98 3.34
476 482 1.594518 CGTATTGGCTTGCGATTTCGG 60.595 52.381 1.75 0.00 40.23 4.30
495 501 1.098050 GTGTCCCAGACCAATCATGC 58.902 55.000 0.00 0.00 0.00 4.06
633 640 7.878127 TCTCAAACCTTAACCTATTCTGTTCTG 59.122 37.037 0.00 0.00 0.00 3.02
650 657 3.126001 TCTGCTTCTGTTTACCAGTGG 57.874 47.619 7.91 7.91 42.19 4.00
655 662 2.943036 TCTGTTTACCAGTGGTTCCC 57.057 50.000 22.49 8.91 42.19 3.97
661 668 5.134661 TGTTTACCAGTGGTTCCCTTAAAG 58.865 41.667 22.49 0.00 37.09 1.85
680 687 4.336889 AAGTAGCAGCACACAACTTCTA 57.663 40.909 0.00 0.00 0.00 2.10
681 688 4.336889 AGTAGCAGCACACAACTTCTAA 57.663 40.909 0.00 0.00 0.00 2.10
736 751 0.401738 CTGAACAAGGAGGCCCAAGA 59.598 55.000 0.00 0.00 33.88 3.02
739 754 1.889170 GAACAAGGAGGCCCAAGAAAG 59.111 52.381 0.00 0.00 33.88 2.62
762 777 5.698545 AGACTGATGAGTACAAGCAAGAAAC 59.301 40.000 0.00 0.00 30.16 2.78
763 778 4.757149 ACTGATGAGTACAAGCAAGAAACC 59.243 41.667 0.00 0.00 0.00 3.27
765 780 5.316167 TGATGAGTACAAGCAAGAAACCAT 58.684 37.500 0.00 0.00 0.00 3.55
766 781 5.181811 TGATGAGTACAAGCAAGAAACCATG 59.818 40.000 0.00 0.00 0.00 3.66
767 782 4.460263 TGAGTACAAGCAAGAAACCATGT 58.540 39.130 0.00 0.00 0.00 3.21
769 784 6.237901 TGAGTACAAGCAAGAAACCATGTAT 58.762 36.000 0.00 0.00 0.00 2.29
770 785 6.371548 TGAGTACAAGCAAGAAACCATGTATC 59.628 38.462 0.00 0.00 0.00 2.24
771 786 6.476378 AGTACAAGCAAGAAACCATGTATCT 58.524 36.000 0.00 0.00 0.00 1.98
772 787 5.886960 ACAAGCAAGAAACCATGTATCTC 57.113 39.130 0.00 0.00 0.00 2.75
773 788 4.702131 ACAAGCAAGAAACCATGTATCTCC 59.298 41.667 0.00 0.00 0.00 3.71
774 789 4.574674 AGCAAGAAACCATGTATCTCCA 57.425 40.909 0.00 0.00 0.00 3.86
775 790 5.121380 AGCAAGAAACCATGTATCTCCAT 57.879 39.130 0.00 0.00 0.00 3.41
776 791 5.128919 AGCAAGAAACCATGTATCTCCATC 58.871 41.667 0.00 0.00 0.00 3.51
777 792 4.276926 GCAAGAAACCATGTATCTCCATCC 59.723 45.833 0.00 0.00 0.00 3.51
778 793 4.713792 AGAAACCATGTATCTCCATCCC 57.286 45.455 0.00 0.00 0.00 3.85
779 794 3.395941 AGAAACCATGTATCTCCATCCCC 59.604 47.826 0.00 0.00 0.00 4.81
780 795 1.747444 ACCATGTATCTCCATCCCCC 58.253 55.000 0.00 0.00 0.00 5.40
781 796 1.060640 ACCATGTATCTCCATCCCCCA 60.061 52.381 0.00 0.00 0.00 4.96
782 797 1.352352 CCATGTATCTCCATCCCCCAC 59.648 57.143 0.00 0.00 0.00 4.61
783 798 2.342659 CATGTATCTCCATCCCCCACT 58.657 52.381 0.00 0.00 0.00 4.00
784 799 1.806496 TGTATCTCCATCCCCCACTG 58.194 55.000 0.00 0.00 0.00 3.66
785 800 1.293763 TGTATCTCCATCCCCCACTGA 59.706 52.381 0.00 0.00 0.00 3.41
786 801 2.089982 TGTATCTCCATCCCCCACTGAT 60.090 50.000 0.00 0.00 0.00 2.90
787 802 1.442773 ATCTCCATCCCCCACTGATG 58.557 55.000 0.00 0.00 39.44 3.07
796 811 2.665000 CCACTGATGGGACGCTGT 59.335 61.111 0.00 0.00 43.04 4.40
797 812 1.897423 CCACTGATGGGACGCTGTA 59.103 57.895 0.00 0.00 43.04 2.74
798 813 0.460284 CCACTGATGGGACGCTGTAC 60.460 60.000 0.00 0.00 43.04 2.90
799 814 0.532573 CACTGATGGGACGCTGTACT 59.467 55.000 0.00 0.00 0.00 2.73
800 815 0.532573 ACTGATGGGACGCTGTACTG 59.467 55.000 0.00 0.00 0.00 2.74
801 816 0.817654 CTGATGGGACGCTGTACTGA 59.182 55.000 3.61 0.00 0.00 3.41
802 817 0.817654 TGATGGGACGCTGTACTGAG 59.182 55.000 3.61 2.75 0.00 3.35
803 818 0.528684 GATGGGACGCTGTACTGAGC 60.529 60.000 3.61 0.00 35.46 4.26
804 819 0.972983 ATGGGACGCTGTACTGAGCT 60.973 55.000 3.61 0.00 36.77 4.09
805 820 1.139947 GGGACGCTGTACTGAGCTC 59.860 63.158 6.82 6.82 36.77 4.09
806 821 1.316706 GGGACGCTGTACTGAGCTCT 61.317 60.000 16.19 0.00 36.77 4.09
807 822 0.528470 GGACGCTGTACTGAGCTCTT 59.472 55.000 16.19 4.39 36.77 2.85
808 823 1.468395 GGACGCTGTACTGAGCTCTTC 60.468 57.143 16.19 3.41 36.77 2.87
809 824 1.470890 GACGCTGTACTGAGCTCTTCT 59.529 52.381 16.19 0.00 36.77 2.85
810 825 1.889829 ACGCTGTACTGAGCTCTTCTT 59.110 47.619 16.19 0.00 36.77 2.52
811 826 2.094957 ACGCTGTACTGAGCTCTTCTTC 60.095 50.000 16.19 2.71 36.77 2.87
812 827 2.733858 CGCTGTACTGAGCTCTTCTTCC 60.734 54.545 16.19 0.00 36.77 3.46
813 828 2.495669 GCTGTACTGAGCTCTTCTTCCT 59.504 50.000 16.19 0.00 35.95 3.36
814 829 3.056179 GCTGTACTGAGCTCTTCTTCCTT 60.056 47.826 16.19 0.00 35.95 3.36
815 830 4.562552 GCTGTACTGAGCTCTTCTTCCTTT 60.563 45.833 16.19 0.00 35.95 3.11
816 831 5.140747 TGTACTGAGCTCTTCTTCCTTTC 57.859 43.478 16.19 0.00 0.00 2.62
817 832 4.588951 TGTACTGAGCTCTTCTTCCTTTCA 59.411 41.667 16.19 0.00 0.00 2.69
818 833 4.696479 ACTGAGCTCTTCTTCCTTTCAA 57.304 40.909 16.19 0.00 0.00 2.69
819 834 5.240013 ACTGAGCTCTTCTTCCTTTCAAT 57.760 39.130 16.19 0.00 0.00 2.57
820 835 5.002516 ACTGAGCTCTTCTTCCTTTCAATG 58.997 41.667 16.19 0.00 0.00 2.82
821 836 5.221803 ACTGAGCTCTTCTTCCTTTCAATGA 60.222 40.000 16.19 0.00 0.00 2.57
822 837 5.624159 TGAGCTCTTCTTCCTTTCAATGAA 58.376 37.500 16.19 0.00 0.00 2.57
823 838 6.064060 TGAGCTCTTCTTCCTTTCAATGAAA 58.936 36.000 16.19 8.25 0.00 2.69
824 839 6.718454 TGAGCTCTTCTTCCTTTCAATGAAAT 59.282 34.615 16.19 0.00 30.85 2.17
825 840 6.921914 AGCTCTTCTTCCTTTCAATGAAATG 58.078 36.000 9.02 6.76 30.85 2.32
826 841 6.718454 AGCTCTTCTTCCTTTCAATGAAATGA 59.282 34.615 9.02 9.09 30.85 2.57
827 842 7.232127 AGCTCTTCTTCCTTTCAATGAAATGAA 59.768 33.333 19.88 19.88 35.18 2.57
828 843 7.869429 GCTCTTCTTCCTTTCAATGAAATGAAA 59.131 33.333 20.89 10.91 44.68 2.69
829 844 9.924650 CTCTTCTTCCTTTCAATGAAATGAAAT 57.075 29.630 20.89 0.00 45.45 2.17
830 845 9.701098 TCTTCTTCCTTTCAATGAAATGAAATG 57.299 29.630 20.89 13.63 45.45 2.32
831 846 7.894376 TCTTCCTTTCAATGAAATGAAATGC 57.106 32.000 20.89 0.00 45.45 3.56
832 847 7.443477 TCTTCCTTTCAATGAAATGAAATGCA 58.557 30.769 20.89 8.23 45.45 3.96
833 848 7.932491 TCTTCCTTTCAATGAAATGAAATGCAA 59.068 29.630 20.89 4.91 45.45 4.08
834 849 8.447924 TTCCTTTCAATGAAATGAAATGCAAA 57.552 26.923 19.19 1.09 45.45 3.68
835 850 8.447924 TCCTTTCAATGAAATGAAATGCAAAA 57.552 26.923 9.02 0.00 45.45 2.44
836 851 9.069082 TCCTTTCAATGAAATGAAATGCAAAAT 57.931 25.926 9.02 0.00 45.45 1.82
837 852 9.337091 CCTTTCAATGAAATGAAATGCAAAATC 57.663 29.630 9.02 0.00 45.45 2.17
853 868 6.467140 GCAAAATCTTTTTGCGTTTTCTTG 57.533 33.333 18.52 0.00 44.13 3.02
854 869 6.247176 GCAAAATCTTTTTGCGTTTTCTTGA 58.753 32.000 18.52 0.00 44.13 3.02
855 870 6.740453 GCAAAATCTTTTTGCGTTTTCTTGAA 59.260 30.769 18.52 0.00 44.13 2.69
856 871 7.270151 GCAAAATCTTTTTGCGTTTTCTTGAAA 59.730 29.630 18.52 0.00 44.13 2.69
857 872 9.111702 CAAAATCTTTTTGCGTTTTCTTGAAAA 57.888 25.926 4.61 4.61 0.00 2.29
858 873 9.670719 AAAATCTTTTTGCGTTTTCTTGAAAAA 57.329 22.222 9.71 0.00 0.00 1.94
885 900 4.138290 AGCAGAGTCTAGCGAGCTAATTA 58.862 43.478 6.27 0.00 35.48 1.40
894 909 7.224949 AGTCTAGCGAGCTAATTAAATTGGAAC 59.775 37.037 6.27 0.00 0.00 3.62
895 910 5.500645 AGCGAGCTAATTAAATTGGAACC 57.499 39.130 0.00 0.00 0.00 3.62
896 911 5.193679 AGCGAGCTAATTAAATTGGAACCT 58.806 37.500 0.00 0.00 0.00 3.50
897 912 5.066505 AGCGAGCTAATTAAATTGGAACCTG 59.933 40.000 0.00 0.00 0.00 4.00
970 985 6.274579 GGAGCAGGTCTTGTCTTATACTAAC 58.725 44.000 0.00 0.00 0.00 2.34
996 1011 3.644606 CTGCTCACCTGCCCCACT 61.645 66.667 0.00 0.00 0.00 4.00
1032 1047 1.070758 AGTCAACACACGCCTCATCTT 59.929 47.619 0.00 0.00 0.00 2.40
1094 1109 8.806146 ACATTTACCATTTCTCTTTTGCATAGT 58.194 29.630 0.00 0.00 0.00 2.12
1109 1132 2.875672 GCATAGTGCTTTCCCTGTGTCA 60.876 50.000 0.00 0.00 40.96 3.58
1149 1172 0.401356 TGAGAGCAACCATGGCTGAA 59.599 50.000 19.49 0.00 42.78 3.02
1312 2438 1.142965 GCGGAGGAGAAAGGAGCTC 59.857 63.158 4.71 4.71 0.00 4.09
1332 2458 2.818274 CGTTCTGGGGTAAGCGCC 60.818 66.667 2.29 0.00 46.74 6.53
1480 2606 1.763770 CTCTTCCCTGCCCACAACT 59.236 57.895 0.00 0.00 0.00 3.16
1521 2647 1.900498 GGGCAAGAAGCTGTGCAGT 60.900 57.895 16.50 0.00 42.74 4.40
1540 2666 0.373370 TATTGTGCGCGTCATTGAGC 59.627 50.000 8.43 0.00 35.03 4.26
1658 2785 4.945246 TCCGAGAAGGATATTGTTAGCAC 58.055 43.478 0.00 0.00 45.98 4.40
1710 2840 8.144478 GTGAGTATATTGGTTGATCAAGCTAGA 58.856 37.037 31.37 24.09 39.38 2.43
1713 2843 8.584157 AGTATATTGGTTGATCAAGCTAGAGAG 58.416 37.037 31.37 0.00 39.38 3.20
1755 2885 1.643310 CCATTGTTGGAATGGGTGGT 58.357 50.000 5.64 0.00 46.92 4.16
1805 2935 5.569355 TGTGTACAATGACCCTGAAATCAT 58.431 37.500 0.00 0.00 37.14 2.45
1816 2946 6.078456 ACCCTGAAATCATGGAGTATTTCA 57.922 37.500 15.56 15.56 45.26 2.69
1845 2975 1.552337 AGGTGGTGCTGTGTATCAGAG 59.448 52.381 0.00 0.00 46.27 3.35
1857 2987 5.168569 TGTGTATCAGAGGATTTTGACGTC 58.831 41.667 9.11 9.11 34.89 4.34
1863 2993 5.291178 TCAGAGGATTTTGACGTCGTTAAA 58.709 37.500 11.62 10.90 0.00 1.52
1887 3017 1.944892 GCAAGCAGCATCTGTCAGACT 60.945 52.381 4.21 0.00 44.79 3.24
1894 3024 3.023119 AGCATCTGTCAGACTAGTGAGG 58.977 50.000 4.21 0.00 0.00 3.86
1917 3047 0.523072 ATCGTGACAAGGCATTGCAC 59.477 50.000 20.92 20.92 40.27 4.57
1969 3099 9.159254 AGAGATACCTTATTGTGTTGGATGATA 57.841 33.333 0.00 0.00 0.00 2.15
2043 3173 1.073025 TGGCAAGGGTAGTGCAGTG 59.927 57.895 3.69 0.00 44.07 3.66
2047 3177 0.957395 CAAGGGTAGTGCAGTGCTGG 60.957 60.000 17.60 0.00 0.00 4.85
2195 3337 0.390340 CCAGACGCTGCTGAGCTAAA 60.390 55.000 5.83 0.00 43.77 1.85
2244 3386 1.229820 TGGGGGCTCTCCTTTAGCA 60.230 57.895 0.00 0.00 41.93 3.49
2301 3443 4.946157 ACTAGCATGAAAGAATGGGTGAAG 59.054 41.667 0.00 0.00 0.00 3.02
2406 3548 5.495502 CACTTGAAACAATGCTTTGCTTTC 58.504 37.500 20.66 20.66 36.22 2.62
2415 3557 3.564235 TGCTTTGCTTTCTGTGCTATG 57.436 42.857 0.00 0.00 0.00 2.23
2568 3711 6.207417 GGAGGTCATTCTTTCAAGATGTCAAA 59.793 38.462 0.00 0.00 34.49 2.69
2607 3771 9.875691 CATAAAGGATATAATGAGATCCGTTCA 57.124 33.333 8.05 0.00 46.47 3.18
2610 3774 6.402222 AGGATATAATGAGATCCGTTCAAGC 58.598 40.000 0.00 0.00 46.47 4.01
2667 3831 3.420893 TGCCTTGTCTGTTATGGGAAAG 58.579 45.455 0.00 0.00 0.00 2.62
2721 3885 6.957631 TCAAAAGGAGTTATTATCAGCAGGA 58.042 36.000 0.00 0.00 0.00 3.86
2743 3907 0.601558 TACTCGCCACCTGTTCTCAC 59.398 55.000 0.00 0.00 0.00 3.51
2763 3982 2.170397 ACCATATGAGTGCATCGGAACA 59.830 45.455 3.65 0.00 35.94 3.18
2795 4014 8.203485 GGATGATTATCTGAAGAAACAGTCTCT 58.797 37.037 0.00 0.00 38.79 3.10
2814 4033 6.100569 AGTCTCTAGCTCTCCAGACACTATTA 59.899 42.308 13.71 0.00 38.20 0.98
2868 4090 5.417894 ACCATTGTCGAAGTACAGTCATCTA 59.582 40.000 0.00 0.00 0.00 1.98
2878 4100 2.437413 ACAGTCATCTACGAGCACTGA 58.563 47.619 4.44 0.00 38.28 3.41
2910 4138 2.235898 GCTGAGAGAACTTCCACTCCAT 59.764 50.000 9.61 0.00 34.13 3.41
2916 4144 3.251484 AGAACTTCCACTCCATCCAAGA 58.749 45.455 0.00 0.00 0.00 3.02
2991 4222 3.956848 AGCTTCCCAAGGAAATAAGCATC 59.043 43.478 7.96 0.00 43.87 3.91
3148 4379 1.819288 TCGGGCAACTCACTTCTCTAG 59.181 52.381 0.00 0.00 0.00 2.43
3156 4387 5.391950 GCAACTCACTTCTCTAGAGACTCTG 60.392 48.000 22.25 16.00 37.14 3.35
3161 4392 6.112734 TCACTTCTCTAGAGACTCTGACATC 58.887 44.000 22.25 0.00 37.14 3.06
3168 4399 8.103935 TCTCTAGAGACTCTGACATCTTTTGTA 58.896 37.037 18.76 0.00 33.43 2.41
3207 4438 4.631813 GGTTGCAGTACTATTGGAGAACTG 59.368 45.833 0.00 0.00 40.38 3.16
3229 4460 3.007635 CGGGACTTAAATCTTGGTGGTC 58.992 50.000 0.00 0.00 0.00 4.02
3242 4473 6.313519 TCTTGGTGGTCAATTAGAGCTATT 57.686 37.500 0.00 0.00 44.98 1.73
3351 4582 3.187227 GTGATGACAGCATTGACGAACTT 59.813 43.478 0.00 0.00 34.11 2.66
3477 5677 5.560724 AGTCCTACTTTTCTGCAGCATTTA 58.439 37.500 9.47 0.00 0.00 1.40
3479 5679 6.660949 AGTCCTACTTTTCTGCAGCATTTAAT 59.339 34.615 9.47 0.00 0.00 1.40
3480 5680 6.749118 GTCCTACTTTTCTGCAGCATTTAATG 59.251 38.462 9.47 0.00 0.00 1.90
3540 5752 9.528018 GAATTTCCACAGTTCAGTCAATTTAAA 57.472 29.630 0.00 0.00 0.00 1.52
3635 5847 6.514947 CATTTCCAACATTGAAAGACCTCAA 58.485 36.000 0.00 0.00 39.56 3.02
3647 5859 8.661352 TTGAAAGACCTCAAATTGGAAAATTC 57.339 30.769 0.00 0.00 32.39 2.17
3670 5882 4.623886 CGGAGATTTTTGAGAGATGGGTGA 60.624 45.833 0.00 0.00 0.00 4.02
3671 5883 5.444176 GGAGATTTTTGAGAGATGGGTGAT 58.556 41.667 0.00 0.00 0.00 3.06
3685 5900 5.306678 AGATGGGTGATATCAGAAGGAGAAC 59.693 44.000 5.42 0.00 0.00 3.01
3770 5985 3.865164 CCTGAAGCACCAAAACTCAAAAC 59.135 43.478 0.00 0.00 0.00 2.43
3832 6047 6.375455 GGCAATATTAAGATCCAGGTACATGG 59.625 42.308 20.57 20.57 42.11 3.66
3856 6071 6.535508 GGCTTACTTGTCTGAGTTAGTTATGG 59.464 42.308 0.00 0.00 30.93 2.74
3871 6089 5.155278 AGTTATGGTTGTCGGTGATACAA 57.845 39.130 0.00 0.00 34.56 2.41
3886 6104 5.288804 GTGATACAAAAGCAACACCAACAT 58.711 37.500 0.00 0.00 0.00 2.71
3891 6109 5.184711 ACAAAAGCAACACCAACATTGAAT 58.815 33.333 0.00 0.00 0.00 2.57
3916 6134 4.871822 TGATCAAGATCCTGGAGTGTCTA 58.128 43.478 1.52 0.00 37.02 2.59
3930 6148 5.710099 TGGAGTGTCTATTTTGGAAATGGAC 59.290 40.000 17.63 17.63 38.24 4.02
3935 6153 7.175641 AGTGTCTATTTTGGAAATGGACTTGAG 59.824 37.037 22.04 2.63 38.47 3.02
3957 6175 1.930503 GGTTGCAACTTTTTGTTCCCG 59.069 47.619 27.64 0.00 36.63 5.14
4011 6232 3.552890 GGAAATGGTTTGGTCAGCTTGTC 60.553 47.826 0.00 0.00 0.00 3.18
4057 6278 1.804372 CGCTCATCTACTGGCCTGAAC 60.804 57.143 17.64 0.00 0.00 3.18
4116 6339 1.233019 TCAGAAACTGCAGCAAGCTC 58.767 50.000 15.27 3.32 45.94 4.09
4123 6346 0.464013 CTGCAGCAAGCTCATAGGCT 60.464 55.000 0.00 0.00 45.94 4.58
4130 6353 1.690219 AAGCTCATAGGCTCCACCCG 61.690 60.000 0.00 0.00 42.24 5.28
4158 6387 1.291132 GATGCCGTACTCAAGGAAGC 58.709 55.000 0.00 0.00 0.00 3.86
4159 6388 0.905357 ATGCCGTACTCAAGGAAGCT 59.095 50.000 0.00 0.00 0.00 3.74
4192 6421 6.279513 TGCCCAATCTAACAAAACTAATGG 57.720 37.500 0.00 0.00 0.00 3.16
4194 6423 6.268847 TGCCCAATCTAACAAAACTAATGGTT 59.731 34.615 0.00 0.00 40.28 3.67
4218 6447 3.558931 TCTTGTGGAAGCTTGACAGAA 57.441 42.857 2.10 6.91 0.00 3.02
4255 6484 1.040339 ATCTCTCACGAGCCTGACCC 61.040 60.000 0.00 0.00 37.19 4.46
4286 6515 5.419542 GTGCCATAGTCTTGAGTTCATACA 58.580 41.667 0.00 0.00 0.00 2.29
4288 6517 5.187772 TGCCATAGTCTTGAGTTCATACAGT 59.812 40.000 0.00 0.00 0.00 3.55
4289 6518 6.109359 GCCATAGTCTTGAGTTCATACAGTT 58.891 40.000 0.00 0.00 0.00 3.16
4335 6564 2.032117 TGTGCAACACTTTGATACAGCG 60.032 45.455 0.00 0.00 45.67 5.18
4357 6586 2.475187 GCATCGTCAGAACACTGCAATC 60.475 50.000 0.00 0.00 34.32 2.67
4373 6602 3.788333 CAATCACCTTGCATCCGAAAT 57.212 42.857 0.00 0.00 0.00 2.17
4394 6623 1.839191 TGCCAGAGCAGTCACCTTT 59.161 52.632 0.00 0.00 46.52 3.11
4414 6643 6.183361 ACCTTTACCCAGAGTTAATCCTTTGT 60.183 38.462 0.00 0.00 0.00 2.83
4447 6676 7.544915 TCATGTTTTTGCATATACATGGTTGTG 59.455 33.333 27.27 12.58 44.88 3.33
4527 6756 1.294780 CAGTGGGCTGGAGTCACTC 59.705 63.158 0.00 0.00 39.43 3.51
4631 6863 3.118702 GGGAACTACTCAGCCCTTAAGAC 60.119 52.174 3.36 0.00 37.59 3.01
4633 6865 2.100989 ACTACTCAGCCCTTAAGACGG 58.899 52.381 3.36 0.00 0.00 4.79
4636 6868 0.179134 CTCAGCCCTTAAGACGGTCG 60.179 60.000 3.36 0.00 0.00 4.79
4663 6895 3.459598 TGGATACTGCCCAGCTCTAAATT 59.540 43.478 0.00 0.00 37.61 1.82
4696 6928 1.666872 GGACACCTCAAACGACGGG 60.667 63.158 0.00 0.00 0.00 5.28
4743 6975 2.977914 TCTCATGCTGGTTCAAGCTAC 58.022 47.619 0.81 0.00 43.90 3.58
4748 6980 1.278127 TGCTGGTTCAAGCTACCCTAC 59.722 52.381 1.64 0.00 43.90 3.18
4760 6992 4.544683 AGCTACCCTACTAAAGGTACCTG 58.455 47.826 17.14 5.59 44.90 4.00
4813 7060 3.517296 TTCCCTTGCCTATTGTGTTGA 57.483 42.857 0.00 0.00 0.00 3.18
4845 7101 3.583383 GCGGTCTGCAGCTTGAAT 58.417 55.556 9.47 0.00 45.45 2.57
4848 7104 1.730446 GCGGTCTGCAGCTTGAATTTC 60.730 52.381 9.47 0.00 45.45 2.17
4873 7129 9.793259 TCTATTCAACTCTCCTTATGTTTTTGT 57.207 29.630 0.00 0.00 0.00 2.83
4883 7139 9.898152 TCTCCTTATGTTTTTGTTTTTGGAAAT 57.102 25.926 0.00 0.00 0.00 2.17
4930 7186 9.653287 TTCTATTCTACGATGTTCTCATTTTGT 57.347 29.630 0.00 0.00 34.06 2.83
4931 7187 9.653287 TCTATTCTACGATGTTCTCATTTTGTT 57.347 29.630 0.00 0.00 34.06 2.83
4939 7195 9.436957 ACGATGTTCTCATTTTGTTAATAGAGT 57.563 29.630 0.00 0.00 34.06 3.24
4954 7210 9.613428 TGTTAATAGAGTTTCCTCATGTATTGG 57.387 33.333 0.00 0.00 40.40 3.16
4955 7211 9.057089 GTTAATAGAGTTTCCTCATGTATTGGG 57.943 37.037 0.00 0.00 40.40 4.12
4956 7212 3.891049 AGAGTTTCCTCATGTATTGGGC 58.109 45.455 0.00 0.00 40.40 5.36
4957 7213 3.266772 AGAGTTTCCTCATGTATTGGGCA 59.733 43.478 0.00 0.00 40.40 5.36
4958 7214 4.016444 GAGTTTCCTCATGTATTGGGCAA 58.984 43.478 0.00 0.00 37.67 4.52
4959 7215 4.019174 AGTTTCCTCATGTATTGGGCAAG 58.981 43.478 0.00 0.00 0.00 4.01
4960 7216 3.737559 TTCCTCATGTATTGGGCAAGT 57.262 42.857 0.00 0.00 0.00 3.16
4961 7217 4.853468 TTCCTCATGTATTGGGCAAGTA 57.147 40.909 0.00 0.00 0.00 2.24
4962 7218 4.422073 TCCTCATGTATTGGGCAAGTAG 57.578 45.455 0.00 0.00 0.00 2.57
4963 7219 4.037222 TCCTCATGTATTGGGCAAGTAGA 58.963 43.478 0.00 0.00 0.00 2.59
4964 7220 4.101585 TCCTCATGTATTGGGCAAGTAGAG 59.898 45.833 0.00 0.00 0.00 2.43
4965 7221 4.101585 CCTCATGTATTGGGCAAGTAGAGA 59.898 45.833 0.00 0.00 0.00 3.10
4966 7222 5.396772 CCTCATGTATTGGGCAAGTAGAGAA 60.397 44.000 0.00 0.00 0.00 2.87
4967 7223 5.674525 TCATGTATTGGGCAAGTAGAGAAG 58.325 41.667 0.00 0.00 0.00 2.85
4968 7224 5.189736 TCATGTATTGGGCAAGTAGAGAAGT 59.810 40.000 0.00 0.00 0.00 3.01
4969 7225 4.832248 TGTATTGGGCAAGTAGAGAAGTG 58.168 43.478 0.00 0.00 0.00 3.16
4970 7226 2.859165 TTGGGCAAGTAGAGAAGTGG 57.141 50.000 0.00 0.00 0.00 4.00
4971 7227 1.729586 TGGGCAAGTAGAGAAGTGGT 58.270 50.000 0.00 0.00 0.00 4.16
4972 7228 2.054799 TGGGCAAGTAGAGAAGTGGTT 58.945 47.619 0.00 0.00 0.00 3.67
4973 7229 2.441750 TGGGCAAGTAGAGAAGTGGTTT 59.558 45.455 0.00 0.00 0.00 3.27
4974 7230 2.814336 GGGCAAGTAGAGAAGTGGTTTG 59.186 50.000 0.00 0.00 0.00 2.93
4975 7231 2.226674 GGCAAGTAGAGAAGTGGTTTGC 59.773 50.000 0.00 0.00 38.85 3.68
4976 7232 3.142174 GCAAGTAGAGAAGTGGTTTGCT 58.858 45.455 0.00 0.00 37.17 3.91
4977 7233 3.565902 GCAAGTAGAGAAGTGGTTTGCTT 59.434 43.478 0.00 0.00 37.17 3.91
4978 7234 4.036852 GCAAGTAGAGAAGTGGTTTGCTTT 59.963 41.667 0.00 0.00 37.17 3.51
4979 7235 5.752712 CAAGTAGAGAAGTGGTTTGCTTTC 58.247 41.667 0.00 0.00 0.00 2.62
4980 7236 5.036117 AGTAGAGAAGTGGTTTGCTTTCA 57.964 39.130 0.00 0.00 0.00 2.69
4981 7237 5.059833 AGTAGAGAAGTGGTTTGCTTTCAG 58.940 41.667 0.00 0.00 0.00 3.02
4982 7238 3.891049 AGAGAAGTGGTTTGCTTTCAGT 58.109 40.909 0.00 0.00 0.00 3.41
4983 7239 5.036117 AGAGAAGTGGTTTGCTTTCAGTA 57.964 39.130 0.00 0.00 0.00 2.74
4984 7240 4.816925 AGAGAAGTGGTTTGCTTTCAGTAC 59.183 41.667 0.00 0.00 0.00 2.73
4985 7241 3.560068 AGAAGTGGTTTGCTTTCAGTACG 59.440 43.478 0.00 0.00 0.00 3.67
4986 7242 3.188159 AGTGGTTTGCTTTCAGTACGA 57.812 42.857 0.00 0.00 0.00 3.43
4987 7243 3.740115 AGTGGTTTGCTTTCAGTACGAT 58.260 40.909 0.00 0.00 0.00 3.73
4988 7244 3.498397 AGTGGTTTGCTTTCAGTACGATG 59.502 43.478 0.00 0.00 0.00 3.84
4989 7245 3.496884 GTGGTTTGCTTTCAGTACGATGA 59.503 43.478 0.00 0.00 0.00 2.92
4990 7246 4.154195 GTGGTTTGCTTTCAGTACGATGAT 59.846 41.667 0.00 0.00 0.00 2.45
4991 7247 5.350365 GTGGTTTGCTTTCAGTACGATGATA 59.650 40.000 0.00 0.00 0.00 2.15
4992 7248 5.580691 TGGTTTGCTTTCAGTACGATGATAG 59.419 40.000 0.00 0.00 33.08 2.08
4996 7252 5.071955 GCTTTCAGTACGATGATAGCAAC 57.928 43.478 17.12 0.00 46.92 4.17
4997 7253 4.806247 GCTTTCAGTACGATGATAGCAACT 59.194 41.667 17.12 0.00 46.92 3.16
4998 7254 5.276584 GCTTTCAGTACGATGATAGCAACTG 60.277 44.000 17.12 4.51 46.92 3.16
4999 7255 4.983671 TCAGTACGATGATAGCAACTGT 57.016 40.909 9.64 0.42 36.56 3.55
5000 7256 6.445357 TTCAGTACGATGATAGCAACTGTA 57.555 37.500 9.64 0.00 36.56 2.74
5001 7257 6.635030 TCAGTACGATGATAGCAACTGTAT 57.365 37.500 9.64 0.00 36.56 2.29
5002 7258 6.669278 TCAGTACGATGATAGCAACTGTATC 58.331 40.000 9.64 0.00 36.56 2.24
5003 7259 5.565638 CAGTACGATGATAGCAACTGTATCG 59.434 44.000 2.98 0.00 42.04 2.92
5004 7260 4.569761 ACGATGATAGCAACTGTATCGT 57.430 40.909 6.67 6.67 43.75 3.73
5005 7261 5.684550 ACGATGATAGCAACTGTATCGTA 57.315 39.130 9.90 0.00 45.79 3.43
5006 7262 5.450171 ACGATGATAGCAACTGTATCGTAC 58.550 41.667 9.90 0.00 45.79 3.67
5007 7263 4.852104 CGATGATAGCAACTGTATCGTACC 59.148 45.833 0.00 0.00 34.43 3.34
5008 7264 5.562113 CGATGATAGCAACTGTATCGTACCA 60.562 44.000 0.00 0.00 34.43 3.25
5009 7265 5.585820 TGATAGCAACTGTATCGTACCAA 57.414 39.130 0.00 0.00 30.59 3.67
5010 7266 5.345702 TGATAGCAACTGTATCGTACCAAC 58.654 41.667 0.00 0.00 30.59 3.77
5011 7267 3.671008 AGCAACTGTATCGTACCAACA 57.329 42.857 0.00 0.00 0.00 3.33
5012 7268 4.202245 AGCAACTGTATCGTACCAACAT 57.798 40.909 0.00 0.00 0.00 2.71
5013 7269 5.333299 AGCAACTGTATCGTACCAACATA 57.667 39.130 0.00 0.00 0.00 2.29
5014 7270 5.914033 AGCAACTGTATCGTACCAACATAT 58.086 37.500 0.00 0.00 0.00 1.78
5015 7271 6.346096 AGCAACTGTATCGTACCAACATATT 58.654 36.000 0.00 0.00 0.00 1.28
5016 7272 6.821665 AGCAACTGTATCGTACCAACATATTT 59.178 34.615 0.00 0.00 0.00 1.40
5017 7273 7.335924 AGCAACTGTATCGTACCAACATATTTT 59.664 33.333 0.00 0.00 0.00 1.82
5018 7274 7.966204 GCAACTGTATCGTACCAACATATTTTT 59.034 33.333 0.00 0.00 0.00 1.94
5022 7278 9.646336 CTGTATCGTACCAACATATTTTTAAGC 57.354 33.333 0.00 0.00 0.00 3.09
5023 7279 9.386010 TGTATCGTACCAACATATTTTTAAGCT 57.614 29.630 0.00 0.00 0.00 3.74
5024 7280 9.646336 GTATCGTACCAACATATTTTTAAGCTG 57.354 33.333 0.00 0.00 0.00 4.24
5025 7281 7.675962 TCGTACCAACATATTTTTAAGCTGT 57.324 32.000 0.00 0.00 0.00 4.40
5026 7282 8.774890 TCGTACCAACATATTTTTAAGCTGTA 57.225 30.769 0.00 0.00 0.00 2.74
5027 7283 9.386010 TCGTACCAACATATTTTTAAGCTGTAT 57.614 29.630 0.00 0.00 0.00 2.29
5028 7284 9.646336 CGTACCAACATATTTTTAAGCTGTATC 57.354 33.333 0.00 0.00 0.00 2.24
5029 7285 9.946165 GTACCAACATATTTTTAAGCTGTATCC 57.054 33.333 0.00 0.00 0.00 2.59
5287 7562 2.504274 CCTTACCCGCCGATAGCCA 61.504 63.158 0.00 0.00 38.78 4.75
5383 7680 0.754217 CCGTCTTCACCCGGGATCTA 60.754 60.000 32.02 8.41 40.54 1.98
5587 7904 5.464389 TGTAAGCCTTCTAGTTCGTCAAAAC 59.536 40.000 0.00 0.00 0.00 2.43
5635 7954 8.668353 TGTGCAATCACTTGTTAGATAAGAATC 58.332 33.333 0.00 0.00 43.49 2.52
5907 8230 5.958321 AGGATTTTGAAAAGAAGGAGGAGT 58.042 37.500 0.00 0.00 0.00 3.85
6170 8495 2.807676 AGGCTAACTTTGATGGTTGGG 58.192 47.619 0.00 0.00 0.00 4.12
6649 8974 4.100279 TCACCAGATAGCCGAGATCTTA 57.900 45.455 0.00 0.00 31.05 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.544685 CAACAATGCCAAAAACACGGA 58.455 42.857 0.00 0.00 0.00 4.69
105 111 7.281100 AGCATCTCTAGTAGCAAAATTTACACC 59.719 37.037 0.00 0.00 0.00 4.16
157 163 0.327924 CACAGTATGGTTGCCCCTCA 59.672 55.000 0.00 0.00 43.62 3.86
203 209 8.429493 AATTATTTACGTTTAGGGTAGCAGTC 57.571 34.615 0.00 0.00 0.00 3.51
204 210 8.671028 CAAATTATTTACGTTTAGGGTAGCAGT 58.329 33.333 0.00 0.00 0.00 4.40
205 211 7.642586 GCAAATTATTTACGTTTAGGGTAGCAG 59.357 37.037 0.00 0.00 0.00 4.24
206 212 7.337436 AGCAAATTATTTACGTTTAGGGTAGCA 59.663 33.333 0.00 0.00 0.00 3.49
207 213 7.642586 CAGCAAATTATTTACGTTTAGGGTAGC 59.357 37.037 0.00 0.00 0.00 3.58
208 214 8.126700 CCAGCAAATTATTTACGTTTAGGGTAG 58.873 37.037 0.00 0.00 0.00 3.18
209 215 7.828223 TCCAGCAAATTATTTACGTTTAGGGTA 59.172 33.333 0.00 0.00 0.00 3.69
210 216 6.660094 TCCAGCAAATTATTTACGTTTAGGGT 59.340 34.615 0.00 0.00 0.00 4.34
211 217 7.090953 TCCAGCAAATTATTTACGTTTAGGG 57.909 36.000 0.00 0.00 0.00 3.53
212 218 7.486870 GGTTCCAGCAAATTATTTACGTTTAGG 59.513 37.037 0.00 0.00 0.00 2.69
230 236 1.830847 ACGGGTTTTGGGTTCCAGC 60.831 57.895 0.00 0.00 33.81 4.85
247 253 1.717194 TCGCTGTTTTCGTATCCCAC 58.283 50.000 0.00 0.00 0.00 4.61
347 353 4.083110 CCAATGTCTCCACTTGCAGTTAAG 60.083 45.833 0.00 0.00 0.00 1.85
468 474 0.739813 GGTCTGGGACACCGAAATCG 60.740 60.000 0.00 0.00 40.75 3.34
472 478 0.323629 GATTGGTCTGGGACACCGAA 59.676 55.000 0.14 0.00 40.75 4.30
476 482 1.098050 GCATGATTGGTCTGGGACAC 58.902 55.000 0.00 0.00 33.68 3.67
541 547 7.094631 GTGTTGTTTTAATAGGGGTCCAATTC 58.905 38.462 0.00 0.00 0.00 2.17
606 612 8.437575 AGAACAGAATAGGTTAAGGTTTGAGAA 58.562 33.333 0.00 0.00 0.00 2.87
613 619 5.763876 AGCAGAACAGAATAGGTTAAGGT 57.236 39.130 0.00 0.00 0.00 3.50
624 630 4.776349 TGGTAAACAGAAGCAGAACAGAA 58.224 39.130 0.00 0.00 0.00 3.02
650 657 3.188667 GTGTGCTGCTACTTTAAGGGAAC 59.811 47.826 0.00 0.00 0.00 3.62
655 662 5.237344 AGAAGTTGTGTGCTGCTACTTTAAG 59.763 40.000 0.00 0.00 0.00 1.85
661 668 3.807622 TGTTAGAAGTTGTGTGCTGCTAC 59.192 43.478 0.00 0.77 0.00 3.58
680 687 5.518848 TTGTTGCTGATTGAAGTCATGTT 57.481 34.783 0.00 0.00 0.00 2.71
681 688 5.518848 TTTGTTGCTGATTGAAGTCATGT 57.481 34.783 0.00 0.00 0.00 3.21
722 737 1.074566 AGTCTTTCTTGGGCCTCCTTG 59.925 52.381 4.53 0.00 0.00 3.61
727 742 1.988107 TCATCAGTCTTTCTTGGGCCT 59.012 47.619 4.53 0.00 0.00 5.19
736 751 5.858381 TCTTGCTTGTACTCATCAGTCTTT 58.142 37.500 0.00 0.00 33.62 2.52
739 754 5.106908 GGTTTCTTGCTTGTACTCATCAGTC 60.107 44.000 0.00 0.00 33.62 3.51
762 777 1.352352 GTGGGGGATGGAGATACATGG 59.648 57.143 0.00 0.00 0.00 3.66
763 778 2.039480 CAGTGGGGGATGGAGATACATG 59.961 54.545 0.00 0.00 0.00 3.21
765 780 1.293763 TCAGTGGGGGATGGAGATACA 59.706 52.381 0.00 0.00 0.00 2.29
766 781 2.103153 TCAGTGGGGGATGGAGATAC 57.897 55.000 0.00 0.00 0.00 2.24
767 782 2.624495 CATCAGTGGGGGATGGAGATA 58.376 52.381 0.00 0.00 38.74 1.98
769 784 2.935348 CATCAGTGGGGGATGGAGA 58.065 57.895 0.00 0.00 38.74 3.71
779 794 0.460284 GTACAGCGTCCCATCAGTGG 60.460 60.000 0.00 0.00 45.61 4.00
780 795 0.532573 AGTACAGCGTCCCATCAGTG 59.467 55.000 0.00 0.00 0.00 3.66
781 796 0.532573 CAGTACAGCGTCCCATCAGT 59.467 55.000 0.00 0.00 0.00 3.41
782 797 0.817654 TCAGTACAGCGTCCCATCAG 59.182 55.000 0.00 0.00 0.00 2.90
783 798 0.817654 CTCAGTACAGCGTCCCATCA 59.182 55.000 0.00 0.00 0.00 3.07
784 799 0.528684 GCTCAGTACAGCGTCCCATC 60.529 60.000 0.00 0.00 0.00 3.51
785 800 0.972983 AGCTCAGTACAGCGTCCCAT 60.973 55.000 0.00 0.00 44.82 4.00
786 801 1.595993 GAGCTCAGTACAGCGTCCCA 61.596 60.000 9.40 0.00 44.82 4.37
787 802 1.139947 GAGCTCAGTACAGCGTCCC 59.860 63.158 9.40 0.00 44.82 4.46
788 803 0.528470 AAGAGCTCAGTACAGCGTCC 59.472 55.000 17.77 0.00 44.82 4.79
789 804 1.470890 AGAAGAGCTCAGTACAGCGTC 59.529 52.381 17.77 0.00 44.82 5.19
790 805 1.540267 AGAAGAGCTCAGTACAGCGT 58.460 50.000 17.77 0.00 44.82 5.07
791 806 2.525055 GAAGAAGAGCTCAGTACAGCG 58.475 52.381 17.77 0.00 44.82 5.18
792 807 2.495669 AGGAAGAAGAGCTCAGTACAGC 59.504 50.000 17.77 0.00 39.99 4.40
793 808 4.799564 AAGGAAGAAGAGCTCAGTACAG 57.200 45.455 17.77 0.00 0.00 2.74
794 809 4.588951 TGAAAGGAAGAAGAGCTCAGTACA 59.411 41.667 17.77 0.00 0.00 2.90
795 810 5.140747 TGAAAGGAAGAAGAGCTCAGTAC 57.859 43.478 17.77 4.00 0.00 2.73
796 811 5.808366 TTGAAAGGAAGAAGAGCTCAGTA 57.192 39.130 17.77 0.00 0.00 2.74
797 812 4.696479 TTGAAAGGAAGAAGAGCTCAGT 57.304 40.909 17.77 2.52 0.00 3.41
798 813 5.243981 TCATTGAAAGGAAGAAGAGCTCAG 58.756 41.667 17.77 0.00 0.00 3.35
799 814 5.233083 TCATTGAAAGGAAGAAGAGCTCA 57.767 39.130 17.77 0.00 0.00 4.26
800 815 6.566197 TTTCATTGAAAGGAAGAAGAGCTC 57.434 37.500 5.27 5.27 29.77 4.09
801 816 6.718454 TCATTTCATTGAAAGGAAGAAGAGCT 59.282 34.615 20.65 0.00 38.96 4.09
802 817 6.917533 TCATTTCATTGAAAGGAAGAAGAGC 58.082 36.000 20.65 0.00 38.96 4.09
809 824 8.447924 TTTGCATTTCATTTCATTGAAAGGAA 57.552 26.923 26.63 26.63 45.89 3.36
810 825 8.447924 TTTTGCATTTCATTTCATTGAAAGGA 57.552 26.923 19.43 19.43 45.47 3.36
811 826 9.337091 GATTTTGCATTTCATTTCATTGAAAGG 57.663 29.630 15.74 15.74 45.83 3.11
831 846 8.652592 TTTCAAGAAAACGCAAAAAGATTTTG 57.347 26.923 10.42 10.42 0.00 2.44
832 847 9.670719 TTTTTCAAGAAAACGCAAAAAGATTTT 57.329 22.222 7.44 0.00 39.70 1.82
855 870 3.508012 TCGCTAGACTCTGCTCTCTTTTT 59.492 43.478 0.00 0.00 0.00 1.94
856 871 3.085533 TCGCTAGACTCTGCTCTCTTTT 58.914 45.455 0.00 0.00 0.00 2.27
857 872 2.682856 CTCGCTAGACTCTGCTCTCTTT 59.317 50.000 0.00 0.00 0.00 2.52
858 873 2.288666 CTCGCTAGACTCTGCTCTCTT 58.711 52.381 0.00 0.00 0.00 2.85
859 874 1.953559 CTCGCTAGACTCTGCTCTCT 58.046 55.000 0.00 0.00 0.00 3.10
860 875 0.307760 GCTCGCTAGACTCTGCTCTC 59.692 60.000 0.00 0.00 0.00 3.20
872 887 6.260050 CAGGTTCCAATTTAATTAGCTCGCTA 59.740 38.462 0.00 0.00 0.00 4.26
885 900 1.202879 TCTCGGTGCAGGTTCCAATTT 60.203 47.619 0.00 0.00 0.00 1.82
946 961 6.127423 TGTTAGTATAAGACAAGACCTGCTCC 60.127 42.308 0.00 0.00 0.00 4.70
976 991 2.436109 GGGGCAGGTGAGCAGAAA 59.564 61.111 0.00 0.00 35.83 2.52
980 995 3.640407 GAGTGGGGCAGGTGAGCA 61.640 66.667 0.00 0.00 35.83 4.26
1009 1024 0.529773 TGAGGCGTGTGTTGACTGAC 60.530 55.000 0.00 0.00 0.00 3.51
1032 1047 4.467438 TGCAGATCTAGATCAAGGACAACA 59.533 41.667 29.83 14.70 40.22 3.33
1094 1109 0.535780 CAGCTGACACAGGGAAAGCA 60.536 55.000 8.42 0.00 36.32 3.91
1109 1132 1.072159 GCTCCCAACTCACACAGCT 59.928 57.895 0.00 0.00 0.00 4.24
1208 2334 0.036765 GTCCATCACCTTGTACCGCA 60.037 55.000 0.00 0.00 0.00 5.69
1266 2392 2.133281 TGATGTTCAAGATGGCTGGG 57.867 50.000 0.00 0.00 0.00 4.45
1312 2438 1.740296 CGCTTACCCCAGAACGGTG 60.740 63.158 0.00 0.00 34.66 4.94
1332 2458 0.952497 TCTTGAGCGCTTTGAGCCAG 60.952 55.000 13.26 0.00 38.18 4.85
1480 2606 4.074627 TCCTGTAACGAAACACAATGGA 57.925 40.909 0.00 0.00 0.00 3.41
1521 2647 0.373370 GCTCAATGACGCGCACAATA 59.627 50.000 5.73 0.00 0.00 1.90
1540 2666 7.627298 ATTCATTCATCTCTTTGACAAGGAG 57.373 36.000 18.68 18.68 0.00 3.69
1658 2785 4.397730 TCTTCTTCTCTTCGTCTCTGGATG 59.602 45.833 0.00 0.00 0.00 3.51
1710 2840 1.296523 ACAATGAGATCCCTCCCCTCT 59.703 52.381 0.00 0.00 38.66 3.69
1713 2843 0.767998 GGACAATGAGATCCCTCCCC 59.232 60.000 0.00 0.00 38.66 4.81
1755 2885 1.761174 GAAGGTGGTCTTGCCCAGA 59.239 57.895 0.00 0.00 35.50 3.86
1816 2946 2.032681 GCACCACCTTCGGAGCTT 59.967 61.111 0.00 0.00 39.33 3.74
1833 2963 5.171476 ACGTCAAAATCCTCTGATACACAG 58.829 41.667 0.00 0.00 46.97 3.66
1839 2969 3.594603 ACGACGTCAAAATCCTCTGAT 57.405 42.857 17.16 0.00 0.00 2.90
1845 2975 5.399892 TGCAATTTTAACGACGTCAAAATCC 59.600 36.000 19.45 14.47 32.22 3.01
1887 3017 3.444034 CCTTGTCACGATCTTCCTCACTA 59.556 47.826 0.00 0.00 0.00 2.74
1894 3024 2.476854 GCAATGCCTTGTCACGATCTTC 60.477 50.000 3.59 0.00 34.69 2.87
1940 3070 6.338146 TCCAACACAATAAGGTATCTCTTCG 58.662 40.000 0.00 0.00 0.00 3.79
1969 3099 6.262496 CACTTGTCAGCATCTTCATTCCATAT 59.738 38.462 0.00 0.00 0.00 1.78
2007 3137 1.004745 CCACCATACTTCAGGCAGGTT 59.995 52.381 0.00 0.00 0.00 3.50
2043 3173 1.270147 ACTTTACGAGTGGTCACCAGC 60.270 52.381 0.00 0.00 37.17 4.85
2047 3177 6.128982 GCTACTTTTACTTTACGAGTGGTCAC 60.129 42.308 0.00 0.00 39.48 3.67
2301 3443 4.213482 CACTTGTTGCTTCTGGTTAGTACC 59.787 45.833 0.00 0.00 45.26 3.34
2321 3463 4.595762 ATTTCTGTCTTTGCATTGCACT 57.404 36.364 11.66 0.00 38.71 4.40
2322 3464 5.662211 AAATTTCTGTCTTTGCATTGCAC 57.338 34.783 11.66 0.00 38.71 4.57
2406 3548 8.461222 TCATAATCTTTTGGAAACATAGCACAG 58.539 33.333 0.00 0.00 42.32 3.66
2484 3626 6.506500 TCAAGATTTTCATCTTCCTTCAGC 57.493 37.500 0.00 0.00 45.26 4.26
2512 3654 6.606395 AGCTCATCAAAAATTTCTCTGCCTAT 59.394 34.615 0.00 0.00 0.00 2.57
2590 3733 5.912892 TGTGCTTGAACGGATCTCATTATA 58.087 37.500 0.00 0.00 0.00 0.98
2667 3831 8.035984 GGCCTATCAACTATAGTAAGACAATCC 58.964 40.741 5.65 4.76 36.57 3.01
2712 3876 1.395826 GGCGAGTAGGTCCTGCTGAT 61.396 60.000 15.04 0.00 0.00 2.90
2721 3885 0.542232 AGAACAGGTGGCGAGTAGGT 60.542 55.000 0.00 0.00 0.00 3.08
2743 3907 2.545526 GTGTTCCGATGCACTCATATGG 59.454 50.000 2.13 0.00 31.96 2.74
2753 3972 2.487762 TCATCCAAAAGTGTTCCGATGC 59.512 45.455 0.00 0.00 0.00 3.91
2763 3982 9.300681 TGTTTCTTCAGATAATCATCCAAAAGT 57.699 29.630 0.00 0.00 0.00 2.66
2868 4090 3.179443 TGAAAGAGTTTCAGTGCTCGT 57.821 42.857 0.00 0.00 44.21 4.18
2878 4100 5.289083 AGTTCTCTCAGCTGAAAGAGTTT 57.711 39.130 24.52 11.73 39.99 2.66
2910 4138 2.047061 AGGTGCTGTAAGTGTCTTGGA 58.953 47.619 0.00 0.00 35.30 3.53
2916 4144 1.424638 ACCTCAGGTGCTGTAAGTGT 58.575 50.000 0.00 0.00 32.98 3.55
3148 4379 5.866633 CCACTACAAAAGATGTCAGAGTCTC 59.133 44.000 0.00 0.00 42.70 3.36
3156 4387 3.944087 AGAGCCCACTACAAAAGATGTC 58.056 45.455 0.00 0.00 42.70 3.06
3161 4392 3.515901 AGGAGTAGAGCCCACTACAAAAG 59.484 47.826 13.22 0.00 43.38 2.27
3168 4399 0.117340 AACCAGGAGTAGAGCCCACT 59.883 55.000 0.00 0.00 0.00 4.00
3207 4438 1.743394 CCACCAAGATTTAAGTCCCGC 59.257 52.381 0.00 0.00 0.00 6.13
3242 4473 8.721478 GCTCTTCAGTTACATATTCAAGACAAA 58.279 33.333 0.00 0.00 0.00 2.83
3270 4501 2.019984 CCAAGACTGGATGCTTTAGCC 58.980 52.381 0.00 0.00 46.92 3.93
3303 4534 8.217131 TCCATTCAAGAGATAAATGTGTGATG 57.783 34.615 0.00 0.00 0.00 3.07
3304 4535 8.051535 ACTCCATTCAAGAGATAAATGTGTGAT 58.948 33.333 0.00 0.00 35.27 3.06
3378 4609 2.226437 CAGCGCAACATGAGGTTTAAGT 59.774 45.455 11.47 0.00 37.72 2.24
3430 5280 3.190878 CCATGTCGGGAAAGCAGC 58.809 61.111 0.00 0.00 0.00 5.25
3453 5653 3.045601 TGCTGCAGAAAAGTAGGACTC 57.954 47.619 20.43 0.00 0.00 3.36
3492 5704 2.068837 CACACATTGTGCAACCATCC 57.931 50.000 16.62 0.00 41.89 3.51
3540 5752 2.618709 CAAAACGAGAACTTCAAGGGCT 59.381 45.455 0.00 0.00 0.00 5.19
3635 5847 8.367156 TCTCAAAAATCTCCGAATTTTCCAATT 58.633 29.630 4.37 0.00 37.75 2.32
3647 5859 3.624861 CACCCATCTCTCAAAAATCTCCG 59.375 47.826 0.00 0.00 0.00 4.63
3712 5927 5.567423 GCTTTGGGCAGTTCTCAATTACAAT 60.567 40.000 0.00 0.00 41.35 2.71
3770 5985 5.546526 CCTTGCCTTCCTCTAGCTTTATAG 58.453 45.833 0.00 0.00 0.00 1.31
3808 6023 6.127897 GCCATGTACCTGGATCTTAATATTGC 60.128 42.308 20.20 0.00 38.69 3.56
3832 6047 7.097834 ACCATAACTAACTCAGACAAGTAAGC 58.902 38.462 0.00 0.00 0.00 3.09
3856 6071 3.889196 TGCTTTTGTATCACCGACAAC 57.111 42.857 0.00 0.00 36.55 3.32
3871 6089 5.280654 AGATTCAATGTTGGTGTTGCTTT 57.719 34.783 0.00 0.00 0.00 3.51
3908 6126 7.174946 TCAAGTCCATTTCCAAAATAGACACTC 59.825 37.037 11.63 0.00 0.00 3.51
3916 6134 4.901250 ACCACTCAAGTCCATTTCCAAAAT 59.099 37.500 0.00 0.00 0.00 1.82
3930 6148 4.244862 ACAAAAAGTTGCAACCACTCAAG 58.755 39.130 25.62 12.27 38.39 3.02
3957 6175 0.524862 CTGGCTGCAATGGACTTGAC 59.475 55.000 0.50 0.00 36.97 3.18
3987 6208 2.676748 AGCTGACCAAACCATTTCCAA 58.323 42.857 0.00 0.00 0.00 3.53
4011 6232 9.941664 GTATCACAAGAAATGATATTCAACCTG 57.058 33.333 0.00 0.00 40.32 4.00
4116 6339 2.768344 ACCCGGGTGGAGCCTATG 60.768 66.667 29.69 0.00 37.49 2.23
4123 6346 1.540367 ATCCTTTCACCCGGGTGGA 60.540 57.895 45.13 39.42 45.43 4.02
4130 6353 0.252197 AGTACGGCATCCTTTCACCC 59.748 55.000 0.00 0.00 0.00 4.61
4158 6387 2.731572 AGATTGGGCAGGAATTGACAG 58.268 47.619 0.00 0.00 36.08 3.51
4159 6388 2.905415 AGATTGGGCAGGAATTGACA 57.095 45.000 0.00 0.00 36.08 3.58
4192 6421 6.017109 TCTGTCAAGCTTCCACAAGAATTAAC 60.017 38.462 0.00 0.00 32.82 2.01
4194 6423 5.620206 TCTGTCAAGCTTCCACAAGAATTA 58.380 37.500 0.00 0.00 32.82 1.40
4199 6428 3.209410 AGTTCTGTCAAGCTTCCACAAG 58.791 45.455 0.00 0.00 0.00 3.16
4218 6447 2.375509 AGATGGGGGAAGAACGAAAAGT 59.624 45.455 0.00 0.00 0.00 2.66
4286 6515 3.069872 CAGCTCTCTATCATCCTGCAACT 59.930 47.826 0.00 0.00 0.00 3.16
4288 6517 2.367894 CCAGCTCTCTATCATCCTGCAA 59.632 50.000 0.00 0.00 0.00 4.08
4289 6518 1.969208 CCAGCTCTCTATCATCCTGCA 59.031 52.381 0.00 0.00 0.00 4.41
4335 6564 0.950555 TGCAGTGTTCTGACGATGCC 60.951 55.000 0.00 0.00 43.76 4.40
4357 6586 3.374745 GCATAATTTCGGATGCAAGGTG 58.625 45.455 6.12 0.00 46.29 4.00
4394 6623 6.012858 ACATGACAAAGGATTAACTCTGGGTA 60.013 38.462 0.00 0.00 0.00 3.69
4414 6643 8.278729 TGTATATGCAAAAACATGAGACATGA 57.721 30.769 16.86 0.00 0.00 3.07
4447 6676 2.143122 TGGCACAGAACGAATCTTGTC 58.857 47.619 0.00 0.00 35.73 3.18
4527 6756 2.081462 GGTAGGTCACCCAAACAATCG 58.919 52.381 0.00 0.00 42.07 3.34
4631 6863 2.132762 GGCAGTATCCAATTACGACCG 58.867 52.381 0.00 0.00 0.00 4.79
4633 6865 3.131396 CTGGGCAGTATCCAATTACGAC 58.869 50.000 0.00 0.00 33.36 4.34
4636 6868 3.142174 GAGCTGGGCAGTATCCAATTAC 58.858 50.000 0.00 0.00 33.36 1.89
4687 6919 2.202837 GCTATCGCCCCGTCGTTT 60.203 61.111 0.00 0.00 0.00 3.60
4710 6942 5.245751 ACCAGCATGAGATAGATCCTTGTAG 59.754 44.000 0.00 0.00 39.69 2.74
4748 6980 6.796705 AACGAAATTGACAGGTACCTTTAG 57.203 37.500 13.15 3.60 0.00 1.85
4831 7086 6.187125 TGAATAGAAATTCAAGCTGCAGAC 57.813 37.500 20.43 9.11 46.64 3.51
4873 7129 9.757227 CAGACATACCAACTTTATTTCCAAAAA 57.243 29.630 0.00 0.00 0.00 1.94
4913 7169 9.436957 ACTCTATTAACAAAATGAGAACATCGT 57.563 29.630 0.00 0.00 35.50 3.73
4938 7194 3.763897 ACTTGCCCAATACATGAGGAAAC 59.236 43.478 0.00 0.00 0.00 2.78
4939 7195 4.046286 ACTTGCCCAATACATGAGGAAA 57.954 40.909 0.00 0.00 0.00 3.13
4940 7196 3.737559 ACTTGCCCAATACATGAGGAA 57.262 42.857 0.00 0.00 0.00 3.36
4941 7197 4.037222 TCTACTTGCCCAATACATGAGGA 58.963 43.478 0.00 0.00 0.00 3.71
4942 7198 4.101585 TCTCTACTTGCCCAATACATGAGG 59.898 45.833 0.00 0.00 0.00 3.86
4943 7199 5.282055 TCTCTACTTGCCCAATACATGAG 57.718 43.478 0.00 0.00 0.00 2.90
4944 7200 5.189736 ACTTCTCTACTTGCCCAATACATGA 59.810 40.000 0.00 0.00 0.00 3.07
4945 7201 5.295292 CACTTCTCTACTTGCCCAATACATG 59.705 44.000 0.00 0.00 0.00 3.21
4946 7202 5.431765 CACTTCTCTACTTGCCCAATACAT 58.568 41.667 0.00 0.00 0.00 2.29
4947 7203 4.323485 CCACTTCTCTACTTGCCCAATACA 60.323 45.833 0.00 0.00 0.00 2.29
4948 7204 4.192317 CCACTTCTCTACTTGCCCAATAC 58.808 47.826 0.00 0.00 0.00 1.89
4949 7205 3.844211 ACCACTTCTCTACTTGCCCAATA 59.156 43.478 0.00 0.00 0.00 1.90
4950 7206 2.644798 ACCACTTCTCTACTTGCCCAAT 59.355 45.455 0.00 0.00 0.00 3.16
4951 7207 2.054799 ACCACTTCTCTACTTGCCCAA 58.945 47.619 0.00 0.00 0.00 4.12
4952 7208 1.729586 ACCACTTCTCTACTTGCCCA 58.270 50.000 0.00 0.00 0.00 5.36
4953 7209 2.814336 CAAACCACTTCTCTACTTGCCC 59.186 50.000 0.00 0.00 0.00 5.36
4954 7210 2.226674 GCAAACCACTTCTCTACTTGCC 59.773 50.000 0.00 0.00 33.31 4.52
4955 7211 3.142174 AGCAAACCACTTCTCTACTTGC 58.858 45.455 0.00 0.00 38.33 4.01
4956 7212 5.296780 TGAAAGCAAACCACTTCTCTACTTG 59.703 40.000 0.00 0.00 0.00 3.16
4957 7213 5.437060 TGAAAGCAAACCACTTCTCTACTT 58.563 37.500 0.00 0.00 0.00 2.24
4958 7214 5.036117 TGAAAGCAAACCACTTCTCTACT 57.964 39.130 0.00 0.00 0.00 2.57
4959 7215 4.816925 ACTGAAAGCAAACCACTTCTCTAC 59.183 41.667 0.00 0.00 37.60 2.59
4960 7216 5.036117 ACTGAAAGCAAACCACTTCTCTA 57.964 39.130 0.00 0.00 37.60 2.43
4961 7217 3.891049 ACTGAAAGCAAACCACTTCTCT 58.109 40.909 0.00 0.00 37.60 3.10
4962 7218 4.318831 CGTACTGAAAGCAAACCACTTCTC 60.319 45.833 0.00 0.00 37.60 2.87
4963 7219 3.560068 CGTACTGAAAGCAAACCACTTCT 59.440 43.478 0.00 0.00 37.60 2.85
4964 7220 3.558418 TCGTACTGAAAGCAAACCACTTC 59.442 43.478 0.00 0.00 37.60 3.01
4965 7221 3.537580 TCGTACTGAAAGCAAACCACTT 58.462 40.909 0.00 0.00 37.60 3.16
4966 7222 3.188159 TCGTACTGAAAGCAAACCACT 57.812 42.857 0.00 0.00 37.60 4.00
4967 7223 3.496884 TCATCGTACTGAAAGCAAACCAC 59.503 43.478 0.00 0.00 37.60 4.16
4968 7224 3.734463 TCATCGTACTGAAAGCAAACCA 58.266 40.909 0.00 0.00 37.60 3.67
4969 7225 4.946784 ATCATCGTACTGAAAGCAAACC 57.053 40.909 0.00 0.00 37.60 3.27
4970 7226 5.063438 TGCTATCATCGTACTGAAAGCAAAC 59.937 40.000 0.00 0.00 37.60 2.93
4971 7227 5.175127 TGCTATCATCGTACTGAAAGCAAA 58.825 37.500 0.00 0.00 37.60 3.68
4972 7228 4.754322 TGCTATCATCGTACTGAAAGCAA 58.246 39.130 0.00 0.00 37.60 3.91
4973 7229 4.385358 TGCTATCATCGTACTGAAAGCA 57.615 40.909 0.00 0.00 37.60 3.91
4974 7230 4.806247 AGTTGCTATCATCGTACTGAAAGC 59.194 41.667 0.00 0.00 37.60 3.51
4975 7231 5.807520 ACAGTTGCTATCATCGTACTGAAAG 59.192 40.000 0.00 0.00 37.15 2.62
4976 7232 5.720202 ACAGTTGCTATCATCGTACTGAAA 58.280 37.500 0.00 0.00 37.15 2.69
4977 7233 5.324784 ACAGTTGCTATCATCGTACTGAA 57.675 39.130 0.00 0.00 37.15 3.02
4978 7234 4.983671 ACAGTTGCTATCATCGTACTGA 57.016 40.909 0.00 0.00 37.15 3.41
4979 7235 5.565638 CGATACAGTTGCTATCATCGTACTG 59.434 44.000 0.00 0.00 39.03 2.74
4980 7236 5.238868 ACGATACAGTTGCTATCATCGTACT 59.761 40.000 5.69 0.00 44.59 2.73
4981 7237 5.450171 ACGATACAGTTGCTATCATCGTAC 58.550 41.667 5.69 0.00 44.59 3.67
4982 7238 5.684550 ACGATACAGTTGCTATCATCGTA 57.315 39.130 5.69 0.00 44.59 3.43
4983 7239 4.569761 ACGATACAGTTGCTATCATCGT 57.430 40.909 1.88 1.88 42.45 3.73
4984 7240 4.852104 GGTACGATACAGTTGCTATCATCG 59.148 45.833 0.00 0.00 40.68 3.84
4985 7241 5.769367 TGGTACGATACAGTTGCTATCATC 58.231 41.667 0.00 0.00 0.00 2.92
4986 7242 5.784578 TGGTACGATACAGTTGCTATCAT 57.215 39.130 0.00 0.00 0.00 2.45
4987 7243 5.105675 TGTTGGTACGATACAGTTGCTATCA 60.106 40.000 0.00 0.00 0.00 2.15
4988 7244 5.345702 TGTTGGTACGATACAGTTGCTATC 58.654 41.667 0.00 0.00 0.00 2.08
4989 7245 5.333299 TGTTGGTACGATACAGTTGCTAT 57.667 39.130 0.00 0.00 0.00 2.97
4990 7246 4.787260 TGTTGGTACGATACAGTTGCTA 57.213 40.909 0.00 0.00 0.00 3.49
4991 7247 3.671008 TGTTGGTACGATACAGTTGCT 57.329 42.857 0.00 0.00 0.00 3.91
4992 7248 6.598753 AATATGTTGGTACGATACAGTTGC 57.401 37.500 0.00 0.00 0.00 4.17
4996 7252 9.646336 GCTTAAAAATATGTTGGTACGATACAG 57.354 33.333 0.00 0.00 0.00 2.74
4997 7253 9.386010 AGCTTAAAAATATGTTGGTACGATACA 57.614 29.630 0.00 0.00 0.00 2.29
4998 7254 9.646336 CAGCTTAAAAATATGTTGGTACGATAC 57.354 33.333 0.00 0.00 0.00 2.24
4999 7255 9.386010 ACAGCTTAAAAATATGTTGGTACGATA 57.614 29.630 0.00 0.00 0.00 2.92
5000 7256 8.276252 ACAGCTTAAAAATATGTTGGTACGAT 57.724 30.769 0.00 0.00 0.00 3.73
5001 7257 7.675962 ACAGCTTAAAAATATGTTGGTACGA 57.324 32.000 0.00 0.00 0.00 3.43
5002 7258 9.646336 GATACAGCTTAAAAATATGTTGGTACG 57.354 33.333 0.00 0.00 0.00 3.67
5003 7259 9.946165 GGATACAGCTTAAAAATATGTTGGTAC 57.054 33.333 0.00 0.00 0.00 3.34
5004 7260 9.914834 AGGATACAGCTTAAAAATATGTTGGTA 57.085 29.630 0.00 0.00 41.41 3.25
5005 7261 8.823220 AGGATACAGCTTAAAAATATGTTGGT 57.177 30.769 0.00 0.00 41.41 3.67
5014 7270 9.043548 ACCTCTTACTAGGATACAGCTTAAAAA 57.956 33.333 0.00 0.00 39.15 1.94
5015 7271 8.605325 ACCTCTTACTAGGATACAGCTTAAAA 57.395 34.615 0.00 0.00 39.15 1.52
5016 7272 8.060075 AGACCTCTTACTAGGATACAGCTTAAA 58.940 37.037 0.00 0.00 39.15 1.52
5017 7273 7.502895 CAGACCTCTTACTAGGATACAGCTTAA 59.497 40.741 0.00 0.00 39.15 1.85
5018 7274 6.999272 CAGACCTCTTACTAGGATACAGCTTA 59.001 42.308 0.00 0.00 39.15 3.09
5019 7275 5.830991 CAGACCTCTTACTAGGATACAGCTT 59.169 44.000 0.00 0.00 39.15 3.74
5020 7276 5.381757 CAGACCTCTTACTAGGATACAGCT 58.618 45.833 0.00 0.00 39.15 4.24
5021 7277 4.022676 GCAGACCTCTTACTAGGATACAGC 60.023 50.000 0.00 0.00 39.15 4.40
5022 7278 5.381757 AGCAGACCTCTTACTAGGATACAG 58.618 45.833 0.00 0.00 39.15 2.74
5023 7279 5.390087 AGCAGACCTCTTACTAGGATACA 57.610 43.478 0.00 0.00 39.15 2.29
5024 7280 5.049267 CGAAGCAGACCTCTTACTAGGATAC 60.049 48.000 0.00 0.00 39.15 2.24
5025 7281 5.064558 CGAAGCAGACCTCTTACTAGGATA 58.935 45.833 0.00 0.00 39.15 2.59
5026 7282 3.886505 CGAAGCAGACCTCTTACTAGGAT 59.113 47.826 0.00 0.00 39.15 3.24
5027 7283 3.280295 CGAAGCAGACCTCTTACTAGGA 58.720 50.000 0.00 0.00 39.15 2.94
5028 7284 2.359531 CCGAAGCAGACCTCTTACTAGG 59.640 54.545 0.00 0.00 42.82 3.02
5029 7285 3.018149 ACCGAAGCAGACCTCTTACTAG 58.982 50.000 0.00 0.00 0.00 2.57
5287 7562 0.546598 CTAGATTGGCGGGGAAAGGT 59.453 55.000 0.00 0.00 0.00 3.50
5635 7954 7.659652 TGTACTACGATCATACAGATGAGAG 57.340 40.000 0.00 0.00 45.29 3.20
5746 8066 6.443792 GTGTCCAAAAACAGATCCGTAAATT 58.556 36.000 0.00 0.00 0.00 1.82
5907 8230 4.871557 ACTTACGTTTTCACTACAAGCACA 59.128 37.500 0.00 0.00 0.00 4.57
6170 8495 3.181451 TGCTCATATCCATCTTCACCACC 60.181 47.826 0.00 0.00 0.00 4.61
6461 8786 0.898320 GTCTCTGGTCTTAGCCTGCA 59.102 55.000 0.00 0.00 0.00 4.41
6649 8974 2.739996 CCCAGCTCCTTCCATCGCT 61.740 63.158 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.