Multiple sequence alignment - TraesCS1B01G466200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G466200 chr1B 100.000 3340 0 0 1 3340 676744883 676748222 0.000000e+00 6168.0
1 TraesCS1B01G466200 chr1B 89.231 455 24 9 2706 3146 167922726 167923169 2.270000e-151 545.0
2 TraesCS1B01G466200 chr1B 96.667 120 4 0 1225 1344 672866219 672866100 2.030000e-47 200.0
3 TraesCS1B01G466200 chr1B 94.030 67 4 0 1346 1412 16435123 16435057 5.900000e-18 102.0
4 TraesCS1B01G466200 chr1B 92.857 70 4 1 1346 1415 16756939 16757007 2.120000e-17 100.0
5 TraesCS1B01G466200 chr1D 91.717 1159 49 19 1 1144 486013112 486014238 0.000000e+00 1565.0
6 TraesCS1B01G466200 chr1D 85.976 1312 87 35 1409 2703 486014238 486015469 0.000000e+00 1314.0
7 TraesCS1B01G466200 chr1D 98.214 56 1 0 1350 1405 96917827 96917882 7.630000e-17 99.0
8 TraesCS1B01G466200 chr1D 95.161 62 3 0 1346 1407 114014897 114014958 7.630000e-17 99.0
9 TraesCS1B01G466200 chr1D 88.158 76 8 1 1346 1420 357463884 357463809 4.590000e-14 89.8
10 TraesCS1B01G466200 chr1D 85.393 89 9 4 1334 1420 357464058 357463972 4.590000e-14 89.8
11 TraesCS1B01G466200 chr1A 88.731 1198 83 27 1418 2600 583604499 583605659 0.000000e+00 1417.0
12 TraesCS1B01G466200 chr1A 93.121 785 33 10 1 768 583602912 583603692 0.000000e+00 1131.0
13 TraesCS1B01G466200 chr1A 94.828 348 12 2 792 1139 583604166 583604507 3.790000e-149 538.0
14 TraesCS1B01G466200 chr1A 100.000 80 0 0 1141 1220 395058080 395058001 7.470000e-32 148.0
15 TraesCS1B01G466200 chr1A 95.455 66 3 0 1346 1411 497753685 497753620 4.560000e-19 106.0
16 TraesCS1B01G466200 chr1A 93.939 66 4 0 1346 1411 572981152 572981087 2.120000e-17 100.0
17 TraesCS1B01G466200 chr1A 93.846 65 4 0 1346 1410 552145856 552145792 7.630000e-17 99.0
18 TraesCS1B01G466200 chr1A 90.411 73 6 1 1346 1417 13591446 13591518 9.870000e-16 95.3
19 TraesCS1B01G466200 chr6B 90.000 650 42 13 2705 3340 46901178 46901818 0.000000e+00 819.0
20 TraesCS1B01G466200 chr6B 87.801 582 40 19 1813 2392 527622595 527622043 0.000000e+00 652.0
21 TraesCS1B01G466200 chr6B 86.655 577 47 19 1813 2388 564720285 564720832 2.200000e-171 612.0
22 TraesCS1B01G466200 chr6B 93.077 130 8 1 1225 1354 644650308 644650180 4.400000e-44 189.0
23 TraesCS1B01G466200 chr6B 94.565 92 4 1 1130 1220 704652039 704652130 1.250000e-29 141.0
24 TraesCS1B01G466200 chrUn 86.970 637 49 21 2706 3340 309589309 309589913 0.000000e+00 686.0
25 TraesCS1B01G466200 chrUn 86.970 637 49 21 2706 3340 361599039 361598435 0.000000e+00 686.0
26 TraesCS1B01G466200 chrUn 96.610 59 2 0 1346 1404 63184987 63184929 7.630000e-17 99.0
27 TraesCS1B01G466200 chrUn 95.082 61 3 0 1346 1406 319723548 319723608 2.740000e-16 97.1
28 TraesCS1B01G466200 chrUn 95.082 61 3 0 1346 1406 319750689 319750749 2.740000e-16 97.1
29 TraesCS1B01G466200 chrUn 95.082 61 3 0 1346 1406 329305274 329305334 2.740000e-16 97.1
30 TraesCS1B01G466200 chrUn 95.000 60 3 0 1346 1405 2542776 2542717 9.870000e-16 95.3
31 TraesCS1B01G466200 chrUn 95.000 60 2 1 1346 1405 20549772 20549830 3.550000e-15 93.5
32 TraesCS1B01G466200 chrUn 94.915 59 3 0 1346 1404 76050977 76050919 3.550000e-15 93.5
33 TraesCS1B01G466200 chrUn 85.263 95 9 4 1346 1439 103517716 103517806 3.550000e-15 93.5
34 TraesCS1B01G466200 chrUn 92.188 64 5 0 1346 1409 46159769 46159706 1.280000e-14 91.6
35 TraesCS1B01G466200 chrUn 92.188 64 5 0 1346 1409 63108518 63108581 1.280000e-14 91.6
36 TraesCS1B01G466200 chrUn 90.000 70 6 1 1346 1414 371432207 371432276 4.590000e-14 89.8
37 TraesCS1B01G466200 chr3A 86.614 635 53 23 2707 3340 506475064 506475667 0.000000e+00 673.0
38 TraesCS1B01G466200 chr3A 87.674 576 39 19 1818 2392 714029003 714028459 2.810000e-180 641.0
39 TraesCS1B01G466200 chr3A 85.294 544 56 13 1558 2099 171137730 171138251 1.050000e-149 540.0
40 TraesCS1B01G466200 chr3A 81.647 583 62 26 1787 2343 171173804 171174367 3.060000e-120 442.0
41 TraesCS1B01G466200 chr3A 95.172 145 7 0 995 1139 171137512 171137656 2.590000e-56 230.0
42 TraesCS1B01G466200 chr3A 90.541 148 11 2 995 1139 171173301 171173448 3.400000e-45 193.0
43 TraesCS1B01G466200 chr3A 97.647 85 1 1 1136 1220 405078773 405078856 9.660000e-31 145.0
44 TraesCS1B01G466200 chr3A 97.015 67 1 1 1346 1411 200809637 200809571 9.800000e-21 111.0
45 TraesCS1B01G466200 chr3A 96.825 63 1 1 1346 1407 607110113 607110175 1.640000e-18 104.0
46 TraesCS1B01G466200 chr7B 86.635 636 50 23 2707 3340 439315251 439314649 0.000000e+00 671.0
47 TraesCS1B01G466200 chr7B 87.852 461 30 10 2706 3152 554168521 554168073 4.940000e-143 518.0
48 TraesCS1B01G466200 chr7B 95.902 122 5 0 1225 1346 535828527 535828406 7.310000e-47 198.0
49 TraesCS1B01G466200 chr7B 92.958 71 5 0 1346 1416 85813965 85813895 1.640000e-18 104.0
50 TraesCS1B01G466200 chr7B 95.385 65 3 0 1346 1410 124004121 124004057 1.640000e-18 104.0
51 TraesCS1B01G466200 chr3B 87.780 581 40 19 1813 2392 644434293 644433743 0.000000e+00 651.0
52 TraesCS1B01G466200 chr3B 87.608 581 42 19 1813 2392 18542348 18542899 0.000000e+00 647.0
53 TraesCS1B01G466200 chr3B 94.488 127 6 1 1225 1351 981429 981554 9.460000e-46 195.0
54 TraesCS1B01G466200 chr3B 89.583 144 15 0 1558 1701 228318464 228318321 2.050000e-42 183.0
55 TraesCS1B01G466200 chr3B 97.647 85 2 0 1136 1220 538074267 538074183 2.690000e-31 147.0
56 TraesCS1B01G466200 chr3B 81.410 156 22 4 795 948 228386408 228386258 1.630000e-23 121.0
57 TraesCS1B01G466200 chr3B 94.828 58 3 0 1081 1138 228318597 228318540 1.280000e-14 91.6
58 TraesCS1B01G466200 chr2A 87.435 581 41 19 1813 2392 617004447 617004996 1.010000e-179 640.0
59 TraesCS1B01G466200 chr7A 87.091 581 43 20 1813 2392 71731867 71732416 2.190000e-176 628.0
60 TraesCS1B01G466200 chr7A 95.200 125 6 0 1225 1349 670537944 670537820 7.310000e-47 198.0
61 TraesCS1B01G466200 chr7A 100.000 80 0 0 1141 1220 367053292 367053371 7.470000e-32 148.0
62 TraesCS1B01G466200 chr7A 100.000 80 0 0 1141 1220 653240463 653240542 7.470000e-32 148.0
63 TraesCS1B01G466200 chr4B 84.961 645 56 26 2704 3340 1176671 1176060 1.700000e-172 616.0
64 TraesCS1B01G466200 chr4B 88.503 461 29 8 2706 3152 139750148 139749698 1.360000e-148 536.0
65 TraesCS1B01G466200 chr4B 95.902 122 5 0 1225 1346 546671876 546671755 7.310000e-47 198.0
66 TraesCS1B01G466200 chr4B 100.000 80 0 0 1141 1220 123016823 123016744 7.470000e-32 148.0
67 TraesCS1B01G466200 chr4B 92.857 70 3 2 1346 1413 37856244 37856175 2.120000e-17 100.0
68 TraesCS1B01G466200 chr4B 93.939 66 4 0 1346 1411 518087648 518087583 2.120000e-17 100.0
69 TraesCS1B01G466200 chr3D 85.063 636 53 26 2707 3340 184635954 184635359 7.920000e-171 610.0
70 TraesCS1B01G466200 chr3D 83.364 541 49 14 1559 2099 157180182 157179683 2.350000e-126 462.0
71 TraesCS1B01G466200 chr3D 81.285 529 68 20 1779 2282 157102672 157102150 1.870000e-107 399.0
72 TraesCS1B01G466200 chr3D 94.483 145 8 0 995 1139 157180433 157180289 1.210000e-54 224.0
73 TraesCS1B01G466200 chr3D 75.972 283 61 7 1800 2079 389266056 389266334 4.490000e-29 139.0
74 TraesCS1B01G466200 chr3D 92.424 66 5 0 1346 1411 11337982 11337917 9.870000e-16 95.3
75 TraesCS1B01G466200 chr3D 92.537 67 4 1 1346 1411 67064842 67064776 9.870000e-16 95.3
76 TraesCS1B01G466200 chr3D 92.647 68 2 3 1346 1411 352148486 352148420 9.870000e-16 95.3
77 TraesCS1B01G466200 chr3D 100.000 32 0 0 1465 1496 179941263 179941232 3.600000e-05 60.2
78 TraesCS1B01G466200 chr3D 94.286 35 2 0 1465 1499 523844561 523844527 2.000000e-03 54.7
79 TraesCS1B01G466200 chr2B 89.912 456 22 8 2705 3146 652842529 652842974 1.740000e-157 566.0
80 TraesCS1B01G466200 chr2B 95.935 123 5 0 1225 1347 789000424 789000546 2.030000e-47 200.0
81 TraesCS1B01G466200 chr2B 95.455 66 3 0 1346 1411 13510447 13510382 4.560000e-19 106.0
82 TraesCS1B01G466200 chr2B 95.455 66 3 0 1346 1411 357910961 357910896 4.560000e-19 106.0
83 TraesCS1B01G466200 chr2B 94.118 68 4 0 1346 1413 520149967 520150034 1.640000e-18 104.0
84 TraesCS1B01G466200 chr2B 94.118 68 4 0 1346 1413 561283172 561283239 1.640000e-18 104.0
85 TraesCS1B01G466200 chr5B 89.177 462 25 9 2706 3152 56912402 56911951 1.350000e-153 553.0
86 TraesCS1B01G466200 chr5B 87.444 446 42 10 2706 3146 544509404 544509840 4.970000e-138 501.0
87 TraesCS1B01G466200 chr5B 83.333 582 50 22 1813 2392 468307298 468306762 8.320000e-136 494.0
88 TraesCS1B01G466200 chr5B 96.682 211 6 1 3130 3340 517870467 517870676 1.910000e-92 350.0
89 TraesCS1B01G466200 chr5B 95.833 120 5 0 1225 1344 692212491 692212372 9.460000e-46 195.0
90 TraesCS1B01G466200 chr4A 89.278 457 25 8 2704 3146 645405082 645405528 4.870000e-153 551.0
91 TraesCS1B01G466200 chr4A 89.231 455 25 8 2706 3146 683244739 683245183 6.300000e-152 547.0
92 TraesCS1B01G466200 chr4A 87.500 232 19 6 2161 2392 550327998 550327777 3.310000e-65 259.0
93 TraesCS1B01G466200 chr4A 98.333 60 1 0 1346 1405 199406586 199406527 4.560000e-19 106.0
94 TraesCS1B01G466200 chr7D 87.852 461 44 10 2699 3156 623785237 623785688 6.340000e-147 531.0
95 TraesCS1B01G466200 chr7D 95.735 211 8 1 3130 3340 623785628 623785837 4.130000e-89 339.0
96 TraesCS1B01G466200 chr7D 96.774 62 2 0 1346 1407 634233417 634233478 1.640000e-18 104.0
97 TraesCS1B01G466200 chr7D 96.721 61 2 0 1346 1406 394185865 394185925 5.900000e-18 102.0
98 TraesCS1B01G466200 chr7D 96.667 60 2 0 1346 1405 371790229 371790288 2.120000e-17 100.0
99 TraesCS1B01G466200 chr7D 93.846 65 4 0 1346 1410 613708117 613708053 7.630000e-17 99.0
100 TraesCS1B01G466200 chr7D 95.238 42 2 0 1462 1503 410057945 410057986 2.150000e-07 67.6
101 TraesCS1B01G466200 chr7D 93.333 45 3 0 1462 1506 444363155 444363199 2.150000e-07 67.6
102 TraesCS1B01G466200 chr7D 100.000 33 0 0 1462 1494 410057943 410057911 1.000000e-05 62.1
103 TraesCS1B01G466200 chr7D 92.857 42 3 0 1462 1503 444363153 444363112 1.000000e-05 62.1
104 TraesCS1B01G466200 chr6A 78.289 783 113 40 1564 2331 1960932 1961672 5.080000e-123 451.0
105 TraesCS1B01G466200 chr6A 95.833 120 5 0 1225 1344 15908839 15908720 9.460000e-46 195.0
106 TraesCS1B01G466200 chr6A 94.118 68 4 0 1346 1413 119610885 119610952 1.640000e-18 104.0
107 TraesCS1B01G466200 chr6A 93.023 43 3 0 1461 1503 49553757 49553799 2.780000e-06 63.9
108 TraesCS1B01G466200 chr6A 93.023 43 3 0 1461 1503 49555581 49555623 2.780000e-06 63.9
109 TraesCS1B01G466200 chr5D 90.705 312 29 0 1786 2097 62528172 62528483 1.850000e-112 416.0
110 TraesCS1B01G466200 chr5D 92.958 142 7 1 996 1134 62527723 62527864 1.570000e-48 204.0
111 TraesCS1B01G466200 chr5D 100.000 80 0 0 1141 1220 276532205 276532126 7.470000e-32 148.0
112 TraesCS1B01G466200 chr6D 85.577 312 42 1 1790 2098 3025620 3025309 1.160000e-84 324.0
113 TraesCS1B01G466200 chr6D 97.619 84 2 0 1137 1220 468308064 468308147 9.660000e-31 145.0
114 TraesCS1B01G466200 chr6D 96.610 59 2 0 1346 1404 87124529 87124471 7.630000e-17 99.0
115 TraesCS1B01G466200 chr6D 95.349 43 2 0 1461 1503 38121141 38121183 5.980000e-08 69.4
116 TraesCS1B01G466200 chr6D 100.000 28 0 0 1462 1489 426065393 426065366 6.000000e-03 52.8
117 TraesCS1B01G466200 chr4D 96.552 58 2 0 1346 1403 269290151 269290094 2.740000e-16 97.1
118 TraesCS1B01G466200 chr4D 91.176 68 4 2 1346 1412 127555059 127555125 1.280000e-14 91.6
119 TraesCS1B01G466200 chr4D 97.222 36 0 1 1462 1496 213422061 213422096 3.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G466200 chr1B 676744883 676748222 3339 False 6168.000000 6168 100.000000 1 3340 1 chr1B.!!$F3 3339
1 TraesCS1B01G466200 chr1D 486013112 486015469 2357 False 1439.500000 1565 88.846500 1 2703 2 chr1D.!!$F3 2702
2 TraesCS1B01G466200 chr1A 583602912 583605659 2747 False 1028.666667 1417 92.226667 1 2600 3 chr1A.!!$F2 2599
3 TraesCS1B01G466200 chr6B 46901178 46901818 640 False 819.000000 819 90.000000 2705 3340 1 chr6B.!!$F1 635
4 TraesCS1B01G466200 chr6B 527622043 527622595 552 True 652.000000 652 87.801000 1813 2392 1 chr6B.!!$R1 579
5 TraesCS1B01G466200 chr6B 564720285 564720832 547 False 612.000000 612 86.655000 1813 2388 1 chr6B.!!$F2 575
6 TraesCS1B01G466200 chrUn 309589309 309589913 604 False 686.000000 686 86.970000 2706 3340 1 chrUn.!!$F4 634
7 TraesCS1B01G466200 chrUn 361598435 361599039 604 True 686.000000 686 86.970000 2706 3340 1 chrUn.!!$R5 634
8 TraesCS1B01G466200 chr3A 506475064 506475667 603 False 673.000000 673 86.614000 2707 3340 1 chr3A.!!$F2 633
9 TraesCS1B01G466200 chr3A 714028459 714029003 544 True 641.000000 641 87.674000 1818 2392 1 chr3A.!!$R2 574
10 TraesCS1B01G466200 chr3A 171137512 171138251 739 False 385.000000 540 90.233000 995 2099 2 chr3A.!!$F4 1104
11 TraesCS1B01G466200 chr3A 171173301 171174367 1066 False 317.500000 442 86.094000 995 2343 2 chr3A.!!$F5 1348
12 TraesCS1B01G466200 chr7B 439314649 439315251 602 True 671.000000 671 86.635000 2707 3340 1 chr7B.!!$R3 633
13 TraesCS1B01G466200 chr3B 644433743 644434293 550 True 651.000000 651 87.780000 1813 2392 1 chr3B.!!$R3 579
14 TraesCS1B01G466200 chr3B 18542348 18542899 551 False 647.000000 647 87.608000 1813 2392 1 chr3B.!!$F2 579
15 TraesCS1B01G466200 chr2A 617004447 617004996 549 False 640.000000 640 87.435000 1813 2392 1 chr2A.!!$F1 579
16 TraesCS1B01G466200 chr7A 71731867 71732416 549 False 628.000000 628 87.091000 1813 2392 1 chr7A.!!$F1 579
17 TraesCS1B01G466200 chr4B 1176060 1176671 611 True 616.000000 616 84.961000 2704 3340 1 chr4B.!!$R1 636
18 TraesCS1B01G466200 chr3D 184635359 184635954 595 True 610.000000 610 85.063000 2707 3340 1 chr3D.!!$R5 633
19 TraesCS1B01G466200 chr3D 157102150 157102672 522 True 399.000000 399 81.285000 1779 2282 1 chr3D.!!$R3 503
20 TraesCS1B01G466200 chr3D 157179683 157180433 750 True 343.000000 462 88.923500 995 2099 2 chr3D.!!$R8 1104
21 TraesCS1B01G466200 chr5B 468306762 468307298 536 True 494.000000 494 83.333000 1813 2392 1 chr5B.!!$R2 579
22 TraesCS1B01G466200 chr7D 623785237 623785837 600 False 435.000000 531 91.793500 2699 3340 2 chr7D.!!$F6 641
23 TraesCS1B01G466200 chr6A 1960932 1961672 740 False 451.000000 451 78.289000 1564 2331 1 chr6A.!!$F1 767
24 TraesCS1B01G466200 chr5D 62527723 62528483 760 False 310.000000 416 91.831500 996 2097 2 chr5D.!!$F1 1101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 205 0.037605 GACTTCCGTCCCGTGTTGAT 60.038 55.0 0.0 0.0 33.98 2.57 F
1156 1641 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 1870 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.0 0.0 0.00 3.46 R
2999 3689 0.037046 TGCGAGCAGAATGAAGCAGA 60.037 50.0 0.0 0.0 39.69 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 7.194278 AGTTGACGACATGTATATCAGTGTAC 58.806 38.462 0.00 0.00 0.00 2.90
203 205 0.037605 GACTTCCGTCCCGTGTTGAT 60.038 55.000 0.00 0.00 33.98 2.57
204 206 0.037605 ACTTCCGTCCCGTGTTGATC 60.038 55.000 0.00 0.00 0.00 2.92
205 207 1.076533 CTTCCGTCCCGTGTTGATCG 61.077 60.000 0.00 0.00 0.00 3.69
206 208 3.186047 CCGTCCCGTGTTGATCGC 61.186 66.667 0.00 0.00 0.00 4.58
207 209 2.431771 CGTCCCGTGTTGATCGCA 60.432 61.111 0.00 0.00 0.00 5.10
223 230 7.062022 TGTTGATCGCATCACATTTTAACAATG 59.938 33.333 8.10 8.10 39.39 2.82
306 317 8.587952 AATCTACAAACCTTGCAAACAAATAC 57.412 30.769 0.00 0.00 34.74 1.89
372 390 4.221703 AGCTAATATGATCGAAGGGAGTGG 59.778 45.833 0.00 0.00 0.00 4.00
448 467 6.492087 TGCTATAAAAAGTTACAGTGGCCTTT 59.508 34.615 3.32 0.00 0.00 3.11
512 533 9.033711 TGAGATCATATCTTTATCTGGAAGGAG 57.966 37.037 0.00 0.00 40.38 3.69
628 649 3.730061 GCAATCTGCAAAGATCCGAACAG 60.730 47.826 0.00 0.00 44.26 3.16
690 711 2.485266 AACAAAACGCCTGCTTGTAC 57.515 45.000 0.00 0.00 33.05 2.90
747 768 9.915629 ACACTTTTAACTTCACTGAGACTATAG 57.084 33.333 0.00 0.00 0.00 1.31
748 769 8.865001 CACTTTTAACTTCACTGAGACTATAGC 58.135 37.037 0.00 0.00 0.00 2.97
750 771 9.646427 CTTTTAACTTCACTGAGACTATAGCTT 57.354 33.333 0.00 0.00 0.00 3.74
752 773 6.842437 AACTTCACTGAGACTATAGCTTGA 57.158 37.500 0.00 0.00 0.00 3.02
753 774 6.202516 ACTTCACTGAGACTATAGCTTGAC 57.797 41.667 0.00 0.00 0.00 3.18
805 1280 0.882042 GGCATAGCATGAGTGGACGG 60.882 60.000 0.00 0.00 0.00 4.79
841 1316 2.349755 CGGGTCGTGGATTGGGTT 59.650 61.111 0.00 0.00 0.00 4.11
910 1387 2.679837 GCGATGATGTGGTTGATCTTGT 59.320 45.455 0.00 0.00 0.00 3.16
911 1388 3.127548 GCGATGATGTGGTTGATCTTGTT 59.872 43.478 0.00 0.00 0.00 2.83
912 1389 4.728882 GCGATGATGTGGTTGATCTTGTTC 60.729 45.833 0.00 0.00 0.00 3.18
913 1390 4.633126 CGATGATGTGGTTGATCTTGTTCT 59.367 41.667 0.00 0.00 0.00 3.01
914 1391 5.812127 CGATGATGTGGTTGATCTTGTTCTA 59.188 40.000 0.00 0.00 0.00 2.10
978 1457 3.306364 CCACTCTTGGTTGAATCGAGTCT 60.306 47.826 14.66 0.00 38.23 3.24
991 1470 1.178276 CGAGTCTAGTGGAAGGCTGT 58.822 55.000 0.00 0.00 29.59 4.40
1139 1624 0.606604 GAAGAGCGGACCAAGGTACA 59.393 55.000 1.81 0.00 0.00 2.90
1143 1628 1.755380 GAGCGGACCAAGGTACATACT 59.245 52.381 1.81 0.00 0.00 2.12
1144 1629 1.755380 AGCGGACCAAGGTACATACTC 59.245 52.381 1.81 0.00 0.00 2.59
1146 1631 1.411612 CGGACCAAGGTACATACTCCC 59.588 57.143 1.81 0.00 0.00 4.30
1147 1632 2.760581 GGACCAAGGTACATACTCCCT 58.239 52.381 0.00 0.00 0.00 4.20
1148 1633 2.699321 GGACCAAGGTACATACTCCCTC 59.301 54.545 0.00 0.00 0.00 4.30
1149 1634 2.699321 GACCAAGGTACATACTCCCTCC 59.301 54.545 0.00 0.00 0.00 4.30
1150 1635 1.687123 CCAAGGTACATACTCCCTCCG 59.313 57.143 0.00 0.00 0.00 4.63
1151 1636 2.385803 CAAGGTACATACTCCCTCCGT 58.614 52.381 0.00 0.00 0.00 4.69
1152 1637 2.361438 CAAGGTACATACTCCCTCCGTC 59.639 54.545 0.00 0.00 0.00 4.79
1153 1638 1.133544 AGGTACATACTCCCTCCGTCC 60.134 57.143 0.00 0.00 0.00 4.79
1154 1639 0.950116 GTACATACTCCCTCCGTCCG 59.050 60.000 0.00 0.00 0.00 4.79
1155 1640 0.839277 TACATACTCCCTCCGTCCGA 59.161 55.000 0.00 0.00 0.00 4.55
1156 1641 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
1157 1642 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
1158 1643 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
1159 1644 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1160 1645 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1161 1646 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1162 1647 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1163 1648 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1164 1649 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1165 1650 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1166 1651 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1167 1652 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1168 1653 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1169 1654 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1170 1655 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1171 1656 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1172 1657 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1173 1658 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1174 1659 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1175 1660 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1176 1661 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1177 1662 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1178 1663 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1186 1671 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
1226 1711 8.749841 AAAATACGTCTAGATACATGAGATGC 57.250 34.615 0.00 0.00 30.69 3.91
1227 1712 7.454260 AATACGTCTAGATACATGAGATGCA 57.546 36.000 0.00 0.00 30.69 3.96
1228 1713 5.114785 ACGTCTAGATACATGAGATGCAC 57.885 43.478 0.00 0.00 30.69 4.57
1229 1714 4.154717 CGTCTAGATACATGAGATGCACG 58.845 47.826 0.00 0.00 0.00 5.34
1230 1715 3.917380 GTCTAGATACATGAGATGCACGC 59.083 47.826 0.00 0.00 0.00 5.34
1231 1716 2.896745 AGATACATGAGATGCACGCA 57.103 45.000 0.00 0.00 0.00 5.24
1232 1717 2.477825 AGATACATGAGATGCACGCAC 58.522 47.619 0.00 0.00 0.00 5.34
1233 1718 2.159057 AGATACATGAGATGCACGCACA 60.159 45.455 0.00 0.00 0.00 4.57
1234 1719 2.314323 TACATGAGATGCACGCACAT 57.686 45.000 0.00 0.00 0.00 3.21
1235 1720 2.314323 ACATGAGATGCACGCACATA 57.686 45.000 0.00 0.00 0.00 2.29
1236 1721 2.631267 ACATGAGATGCACGCACATAA 58.369 42.857 0.00 0.00 0.00 1.90
1237 1722 3.009026 ACATGAGATGCACGCACATAAA 58.991 40.909 0.00 0.00 0.00 1.40
1238 1723 3.439825 ACATGAGATGCACGCACATAAAA 59.560 39.130 0.00 0.00 0.00 1.52
1239 1724 4.096833 ACATGAGATGCACGCACATAAAAT 59.903 37.500 0.00 0.00 0.00 1.82
1240 1725 4.018649 TGAGATGCACGCACATAAAATG 57.981 40.909 0.00 0.00 0.00 2.32
1241 1726 3.439825 TGAGATGCACGCACATAAAATGT 59.560 39.130 0.00 0.00 46.22 2.71
1242 1727 4.019919 AGATGCACGCACATAAAATGTC 57.980 40.909 0.00 0.00 42.70 3.06
1243 1728 2.627863 TGCACGCACATAAAATGTCC 57.372 45.000 0.00 0.00 42.70 4.02
1251 1736 5.854157 CGCACATAAAATGTCCGGATATAC 58.146 41.667 14.71 0.00 40.59 1.47
1252 1737 5.407084 CGCACATAAAATGTCCGGATATACA 59.593 40.000 14.71 5.01 40.59 2.29
1253 1738 6.599437 GCACATAAAATGTCCGGATATACAC 58.401 40.000 14.71 0.00 42.70 2.90
1254 1739 6.617741 GCACATAAAATGTCCGGATATACACG 60.618 42.308 14.71 5.24 42.70 4.49
1255 1740 5.407387 ACATAAAATGTCCGGATATACACGC 59.593 40.000 14.71 0.00 39.92 5.34
1256 1741 2.060326 AATGTCCGGATATACACGCG 57.940 50.000 14.71 3.53 0.00 6.01
1257 1742 0.242825 ATGTCCGGATATACACGCGG 59.757 55.000 12.63 1.27 0.00 6.46
1258 1743 1.080974 GTCCGGATATACACGCGGG 60.081 63.158 6.92 6.92 0.00 6.13
1259 1744 2.260434 CCGGATATACACGCGGGG 59.740 66.667 15.46 5.78 0.00 5.73
1260 1745 2.567497 CCGGATATACACGCGGGGT 61.567 63.158 15.46 12.52 0.00 4.95
1261 1746 1.364901 CGGATATACACGCGGGGTT 59.635 57.895 15.46 0.91 0.00 4.11
1262 1747 0.249573 CGGATATACACGCGGGGTTT 60.250 55.000 15.46 7.35 0.00 3.27
1263 1748 1.807377 CGGATATACACGCGGGGTTTT 60.807 52.381 15.46 3.58 0.00 2.43
1264 1749 2.291365 GGATATACACGCGGGGTTTTT 58.709 47.619 15.46 0.00 0.00 1.94
1265 1750 2.032426 GGATATACACGCGGGGTTTTTG 59.968 50.000 15.46 0.12 0.00 2.44
1266 1751 2.181954 TATACACGCGGGGTTTTTGT 57.818 45.000 15.46 7.48 0.00 2.83
1267 1752 1.320507 ATACACGCGGGGTTTTTGTT 58.679 45.000 15.46 0.00 0.00 2.83
1268 1753 1.101331 TACACGCGGGGTTTTTGTTT 58.899 45.000 15.46 0.00 0.00 2.83
1269 1754 0.179132 ACACGCGGGGTTTTTGTTTC 60.179 50.000 15.46 0.00 0.00 2.78
1270 1755 1.064458 ACGCGGGGTTTTTGTTTCG 59.936 52.632 12.47 0.00 0.00 3.46
1271 1756 1.355916 CGCGGGGTTTTTGTTTCGA 59.644 52.632 0.00 0.00 0.00 3.71
1272 1757 0.248539 CGCGGGGTTTTTGTTTCGAA 60.249 50.000 0.00 0.00 0.00 3.71
1273 1758 1.600912 CGCGGGGTTTTTGTTTCGAAT 60.601 47.619 0.00 0.00 0.00 3.34
1274 1759 2.475818 GCGGGGTTTTTGTTTCGAATT 58.524 42.857 0.00 0.00 0.00 2.17
1275 1760 2.867368 GCGGGGTTTTTGTTTCGAATTT 59.133 40.909 0.00 0.00 0.00 1.82
1276 1761 3.310227 GCGGGGTTTTTGTTTCGAATTTT 59.690 39.130 0.00 0.00 0.00 1.82
1277 1762 4.201832 GCGGGGTTTTTGTTTCGAATTTTT 60.202 37.500 0.00 0.00 0.00 1.94
1278 1763 5.494618 CGGGGTTTTTGTTTCGAATTTTTC 58.505 37.500 0.00 0.00 0.00 2.29
1279 1764 5.063564 CGGGGTTTTTGTTTCGAATTTTTCA 59.936 36.000 0.00 0.00 0.00 2.69
1280 1765 6.402226 CGGGGTTTTTGTTTCGAATTTTTCAA 60.402 34.615 0.00 0.00 0.00 2.69
1281 1766 6.743627 GGGGTTTTTGTTTCGAATTTTTCAAC 59.256 34.615 0.00 0.00 0.00 3.18
1282 1767 7.361371 GGGGTTTTTGTTTCGAATTTTTCAACT 60.361 33.333 0.00 0.00 0.00 3.16
1283 1768 8.018520 GGGTTTTTGTTTCGAATTTTTCAACTT 58.981 29.630 0.00 0.00 0.00 2.66
1284 1769 9.388346 GGTTTTTGTTTCGAATTTTTCAACTTT 57.612 25.926 0.00 0.00 0.00 2.66
1287 1772 8.852365 TTTGTTTCGAATTTTTCAACTTTTCG 57.148 26.923 0.00 0.00 40.23 3.46
1288 1773 7.798486 TGTTTCGAATTTTTCAACTTTTCGA 57.202 28.000 0.00 2.30 44.33 3.71
1293 1778 8.401046 TCGAATTTTTCAACTTTTCGAAATGT 57.599 26.923 20.26 20.26 43.43 2.71
1294 1779 9.504710 TCGAATTTTTCAACTTTTCGAAATGTA 57.495 25.926 24.52 11.36 43.43 2.29
1312 1797 8.934973 GAAATGTATATTTCGACAATAGGTGC 57.065 34.615 8.91 0.00 41.81 5.01
1313 1798 8.445275 AAATGTATATTTCGACAATAGGTGCA 57.555 30.769 0.00 0.00 30.85 4.57
1314 1799 8.621532 AATGTATATTTCGACAATAGGTGCAT 57.378 30.769 0.00 0.00 0.00 3.96
1315 1800 9.719355 AATGTATATTTCGACAATAGGTGCATA 57.281 29.630 0.00 0.00 0.00 3.14
1316 1801 9.890629 ATGTATATTTCGACAATAGGTGCATAT 57.109 29.630 0.00 0.00 0.00 1.78
1317 1802 9.150348 TGTATATTTCGACAATAGGTGCATATG 57.850 33.333 0.00 0.00 0.00 1.78
1318 1803 4.811555 TTTCGACAATAGGTGCATATGC 57.188 40.909 21.09 21.09 42.50 3.14
1329 1814 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
1330 1815 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
1331 1816 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
1332 1817 2.749466 GCATATGCACCTAGGAGCCAAA 60.749 50.000 25.94 13.05 41.59 3.28
1333 1818 3.144506 CATATGCACCTAGGAGCCAAAG 58.855 50.000 25.94 11.57 0.00 2.77
1334 1819 0.257039 ATGCACCTAGGAGCCAAAGG 59.743 55.000 25.94 6.43 36.42 3.11
1347 1832 1.463674 CCAAAGGCAATTACCGCTCT 58.536 50.000 0.00 0.00 33.69 4.09
1348 1833 2.639065 CCAAAGGCAATTACCGCTCTA 58.361 47.619 0.00 0.00 33.69 2.43
1349 1834 2.614057 CCAAAGGCAATTACCGCTCTAG 59.386 50.000 0.00 0.00 33.69 2.43
1350 1835 3.531538 CAAAGGCAATTACCGCTCTAGA 58.468 45.455 0.00 0.00 33.69 2.43
1351 1836 4.130118 CAAAGGCAATTACCGCTCTAGAT 58.870 43.478 0.00 0.00 33.69 1.98
1352 1837 5.297547 CAAAGGCAATTACCGCTCTAGATA 58.702 41.667 0.00 0.00 33.69 1.98
1353 1838 4.522722 AGGCAATTACCGCTCTAGATAC 57.477 45.455 0.00 0.00 33.69 2.24
1354 1839 3.895656 AGGCAATTACCGCTCTAGATACA 59.104 43.478 0.00 0.00 33.69 2.29
1355 1840 4.528596 AGGCAATTACCGCTCTAGATACAT 59.471 41.667 0.00 0.00 33.69 2.29
1356 1841 5.012148 AGGCAATTACCGCTCTAGATACATT 59.988 40.000 0.00 0.00 33.69 2.71
1357 1842 5.701290 GGCAATTACCGCTCTAGATACATTT 59.299 40.000 0.00 0.00 0.00 2.32
1358 1843 6.204882 GGCAATTACCGCTCTAGATACATTTT 59.795 38.462 0.00 0.00 0.00 1.82
1359 1844 7.291567 GCAATTACCGCTCTAGATACATTTTC 58.708 38.462 0.00 0.00 0.00 2.29
1360 1845 7.171678 GCAATTACCGCTCTAGATACATTTTCT 59.828 37.037 0.00 0.00 0.00 2.52
1361 1846 9.046296 CAATTACCGCTCTAGATACATTTTCTT 57.954 33.333 0.00 0.00 0.00 2.52
1362 1847 9.614792 AATTACCGCTCTAGATACATTTTCTTT 57.385 29.630 0.00 0.00 0.00 2.52
1363 1848 9.614792 ATTACCGCTCTAGATACATTTTCTTTT 57.385 29.630 0.00 0.00 0.00 2.27
1366 1851 9.614792 ACCGCTCTAGATACATTTTCTTTTATT 57.385 29.630 0.00 0.00 0.00 1.40
1390 1875 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1391 1876 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1392 1877 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1393 1878 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1394 1879 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1395 1880 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1396 1881 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1397 1882 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1398 1883 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1399 1884 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1400 1885 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1401 1886 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1402 1887 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1403 1888 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
1404 1889 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
1405 1890 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
1406 1891 0.911769 TCGGACGGAGGGAGTACTAA 59.088 55.000 0.00 0.00 0.00 2.24
1407 1892 1.492176 TCGGACGGAGGGAGTACTAAT 59.508 52.381 0.00 0.00 0.00 1.73
1496 2022 7.404139 AAACGTCTTACATTAGTGAACAGAC 57.596 36.000 0.00 0.01 0.00 3.51
1522 2050 6.091441 GTGGTAGCAGAGTAAAGTTCTTCATG 59.909 42.308 0.00 0.00 0.00 3.07
1668 2209 1.587043 CGAGGACCAGAAGAGCGTCA 61.587 60.000 0.00 0.00 0.00 4.35
1690 2234 0.541863 CCCAAGAACTACTCCGCCAT 59.458 55.000 0.00 0.00 0.00 4.40
1726 2270 7.202526 ACAAAAATCAACACCTCAACACATAG 58.797 34.615 0.00 0.00 0.00 2.23
1729 2273 7.435068 AAATCAACACCTCAACACATAGTAC 57.565 36.000 0.00 0.00 0.00 2.73
1732 2276 6.530120 TCAACACCTCAACACATAGTACAAT 58.470 36.000 0.00 0.00 0.00 2.71
1745 2306 0.938168 GTACAATCGATCGACCGGCC 60.938 60.000 22.06 5.06 0.00 6.13
1779 2365 7.940178 AACTGAAACGAAACAAAACTTTTCT 57.060 28.000 0.00 0.00 31.82 2.52
1780 2366 7.940178 ACTGAAACGAAACAAAACTTTTCTT 57.060 28.000 0.00 0.00 31.82 2.52
1781 2367 7.783209 ACTGAAACGAAACAAAACTTTTCTTG 58.217 30.769 0.00 0.00 31.82 3.02
1782 2368 7.436970 ACTGAAACGAAACAAAACTTTTCTTGT 59.563 29.630 0.00 0.00 37.36 3.16
1783 2369 8.132604 TGAAACGAAACAAAACTTTTCTTGTT 57.867 26.923 0.00 0.00 45.35 2.83
1895 2481 3.214845 ATCTACGACCCGGACGCC 61.215 66.667 17.97 0.00 0.00 5.68
2132 2737 7.014134 TGGCAGTAATTAATTCATGGTGGTATG 59.986 37.037 3.39 0.00 0.00 2.39
2142 2747 2.572191 TGGTGGTATGTCGATCGTTC 57.428 50.000 15.94 10.24 0.00 3.95
2143 2748 1.202211 TGGTGGTATGTCGATCGTTCG 60.202 52.381 15.94 9.59 46.87 3.95
2175 2831 3.896648 ATGTTTAAGTGGTCTGCAACG 57.103 42.857 0.00 0.00 0.00 4.10
2184 2840 0.950555 GGTCTGCAACGCTGTGATGA 60.951 55.000 2.44 0.00 0.00 2.92
2185 2841 1.081892 GTCTGCAACGCTGTGATGAT 58.918 50.000 2.44 0.00 0.00 2.45
2281 2939 3.797546 GTCTGCGCCTGCTTCTGC 61.798 66.667 4.18 0.00 43.34 4.26
2282 2940 4.012811 TCTGCGCCTGCTTCTGCT 62.013 61.111 4.18 0.00 43.34 4.24
2283 2941 3.800863 CTGCGCCTGCTTCTGCTG 61.801 66.667 4.18 0.00 43.34 4.41
2286 2944 3.800863 CGCCTGCTTCTGCTGCTG 61.801 66.667 0.00 0.00 40.48 4.41
2332 2990 0.979709 TGCCCTGTGATGAGAGGAGG 60.980 60.000 0.00 0.00 34.30 4.30
2333 2991 0.689080 GCCCTGTGATGAGAGGAGGA 60.689 60.000 0.00 0.00 34.30 3.71
2334 2992 1.412079 CCCTGTGATGAGAGGAGGAG 58.588 60.000 0.00 0.00 34.30 3.69
2348 3006 2.507324 GGAGACTGAAGCGCGACC 60.507 66.667 12.10 0.00 0.00 4.79
2395 3054 8.218488 TCACTAGCTAGTATTGTCTCCAGAATA 58.782 37.037 25.63 0.00 34.13 1.75
2396 3055 8.851145 CACTAGCTAGTATTGTCTCCAGAATAA 58.149 37.037 25.63 0.00 34.13 1.40
2409 3068 6.429385 GTCTCCAGAATAAGGATTTGGCTATG 59.571 42.308 0.00 0.00 33.99 2.23
2434 3093 5.964758 TCCATGTAATGCCAAGAAATGTTC 58.035 37.500 0.00 0.00 44.97 3.18
2491 3158 8.574196 TGTTTTAAATTTTCTAGCTTCACTGC 57.426 30.769 0.00 0.00 0.00 4.40
2514 3181 7.686434 TGCTATCCCACTTCTAGTTTAACTTT 58.314 34.615 1.94 0.00 0.00 2.66
2522 3189 9.074576 CCACTTCTAGTTTAACTTTAAATGGGT 57.925 33.333 1.94 0.00 35.35 4.51
2551 3218 4.386951 CCGGTCGCACACCCATGA 62.387 66.667 0.00 0.00 43.31 3.07
2554 3221 1.078497 GGTCGCACACCCATGATCA 60.078 57.895 0.00 0.00 39.69 2.92
2568 3235 2.107950 TGATCACGATTGGTCCAACC 57.892 50.000 6.41 0.00 39.22 3.77
2590 3257 3.118738 CGTAGCTGTTTGATCCCTACCTT 60.119 47.826 0.00 0.00 0.00 3.50
2596 3263 5.174037 TGTTTGATCCCTACCTTACCTTG 57.826 43.478 0.00 0.00 0.00 3.61
2605 3272 4.081031 CCCTACCTTACCTTGTCCTCTTTC 60.081 50.000 0.00 0.00 0.00 2.62
2609 3276 3.328050 CCTTACCTTGTCCTCTTTCCACT 59.672 47.826 0.00 0.00 0.00 4.00
2610 3277 2.938956 ACCTTGTCCTCTTTCCACTG 57.061 50.000 0.00 0.00 0.00 3.66
2615 3282 1.768275 TGTCCTCTTTCCACTGCTTCA 59.232 47.619 0.00 0.00 0.00 3.02
2640 3307 4.452825 CCACTACGAGTCTTCCTCTCATA 58.547 47.826 0.00 0.00 38.11 2.15
2647 3314 4.274950 CGAGTCTTCCTCTCATACTTCTCC 59.725 50.000 0.00 0.00 38.11 3.71
2648 3315 5.445964 GAGTCTTCCTCTCATACTTCTCCT 58.554 45.833 0.00 0.00 37.22 3.69
2649 3316 5.837829 AGTCTTCCTCTCATACTTCTCCTT 58.162 41.667 0.00 0.00 0.00 3.36
2650 3317 6.260663 AGTCTTCCTCTCATACTTCTCCTTT 58.739 40.000 0.00 0.00 0.00 3.11
2651 3318 6.154363 AGTCTTCCTCTCATACTTCTCCTTTG 59.846 42.308 0.00 0.00 0.00 2.77
2652 3319 6.019748 TCTTCCTCTCATACTTCTCCTTTGT 58.980 40.000 0.00 0.00 0.00 2.83
2653 3320 5.923733 TCCTCTCATACTTCTCCTTTGTC 57.076 43.478 0.00 0.00 0.00 3.18
2654 3321 4.399618 TCCTCTCATACTTCTCCTTTGTCG 59.600 45.833 0.00 0.00 0.00 4.35
2655 3322 4.109050 CTCTCATACTTCTCCTTTGTCGC 58.891 47.826 0.00 0.00 0.00 5.19
2656 3323 3.764434 TCTCATACTTCTCCTTTGTCGCT 59.236 43.478 0.00 0.00 0.00 4.93
2657 3324 4.109050 CTCATACTTCTCCTTTGTCGCTC 58.891 47.826 0.00 0.00 0.00 5.03
2658 3325 2.631418 TACTTCTCCTTTGTCGCTCG 57.369 50.000 0.00 0.00 0.00 5.03
2659 3326 0.667792 ACTTCTCCTTTGTCGCTCGC 60.668 55.000 0.00 0.00 0.00 5.03
2660 3327 1.355066 CTTCTCCTTTGTCGCTCGCC 61.355 60.000 0.00 0.00 0.00 5.54
2661 3328 3.181967 CTCCTTTGTCGCTCGCCG 61.182 66.667 0.00 0.00 38.61 6.46
2664 3331 4.430423 CTTTGTCGCTCGCCGCAC 62.430 66.667 0.00 0.00 39.08 5.34
2679 3346 2.358737 CACCCACCTCGTGCCTTC 60.359 66.667 0.00 0.00 31.34 3.46
2680 3347 3.637273 ACCCACCTCGTGCCTTCC 61.637 66.667 0.00 0.00 31.34 3.46
2681 3348 4.410400 CCCACCTCGTGCCTTCCC 62.410 72.222 0.00 0.00 31.34 3.97
2682 3349 4.760047 CCACCTCGTGCCTTCCCG 62.760 72.222 0.00 0.00 31.34 5.14
2700 3367 2.887568 CACCTCGCCGTCATGCTC 60.888 66.667 0.00 0.00 0.00 4.26
2726 3393 6.538742 GCTGGAGTAAATTGCACAGAAGTATA 59.461 38.462 9.19 0.00 0.00 1.47
2741 3408 7.068103 CACAGAAGTATAACAATTGGGGCATTA 59.932 37.037 10.83 0.00 0.00 1.90
2742 3409 7.617723 ACAGAAGTATAACAATTGGGGCATTAA 59.382 33.333 10.83 0.00 0.00 1.40
3007 3697 4.069232 CGACCCCGCTCTGCTTCA 62.069 66.667 0.00 0.00 0.00 3.02
3012 3702 1.094073 CCCCGCTCTGCTTCATTCTG 61.094 60.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.034804 GCCTAGTAACAATGGATCAATTTTGTT 58.965 33.333 14.68 14.68 42.91 2.83
10 11 4.188462 CACGCCTAGTAACAATGGATCAA 58.812 43.478 0.00 0.00 0.00 2.57
123 124 7.816640 TCATGTGTGGAGCTAATAAAAACTTC 58.183 34.615 0.00 0.00 0.00 3.01
223 230 8.723942 ATATTTGAATCTAACTGTGAGTCCAC 57.276 34.615 0.00 0.00 43.46 4.02
438 457 6.099341 GGAAAACAATACATAAAGGCCACTG 58.901 40.000 5.01 0.00 0.00 3.66
448 467 8.458573 ACAGTTCTGTTGGAAAACAATACATA 57.541 30.769 0.00 0.00 41.95 2.29
512 533 7.303998 GGCAACATCTTGAGCTGATATATTTC 58.696 38.462 0.00 0.00 0.00 2.17
515 536 5.251764 GGGCAACATCTTGAGCTGATATAT 58.748 41.667 0.00 0.00 39.74 0.86
628 649 1.947456 GTTTGGAATCCGACTATGGCC 59.053 52.381 0.00 0.00 0.00 5.36
666 687 2.216203 GCAGGCGTTTTGTTTCTGC 58.784 52.632 0.00 0.00 42.89 4.26
775 828 1.521681 GCTATGCCACCCGTCACTC 60.522 63.158 0.00 0.00 0.00 3.51
776 829 1.626356 ATGCTATGCCACCCGTCACT 61.626 55.000 0.00 0.00 0.00 3.41
805 1280 2.125753 CTCTGCAGCGGTGAGGTC 60.126 66.667 20.69 0.22 0.00 3.85
830 1305 1.890489 GTACCCACAAACCCAATCCAC 59.110 52.381 0.00 0.00 0.00 4.02
841 1316 7.819500 AGACTAGTAGTATATGGTACCCACAA 58.180 38.462 10.07 0.00 35.80 3.33
869 1346 1.333308 CACACGTCACTGCATGGAAAA 59.667 47.619 0.00 0.00 0.00 2.29
914 1391 9.965902 ACTTGTAGGAAAAATCAGATGTAGAAT 57.034 29.630 0.00 0.00 0.00 2.40
978 1457 3.053831 GCTAACAACAGCCTTCCACTA 57.946 47.619 0.00 0.00 35.40 2.74
991 1470 1.630369 AGCAGAGTCCATGGCTAACAA 59.370 47.619 6.96 0.00 34.25 2.83
1004 1483 1.203112 TGTCTCCTCCTTCAGCAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
1139 1624 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
1143 1628 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1144 1629 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1146 1631 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1147 1632 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1148 1633 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1149 1634 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1150 1635 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
1151 1636 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
1152 1637 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1153 1638 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
1160 1645 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
1200 1685 9.841880 GCATCTCATGTATCTAGACGTATTTTA 57.158 33.333 0.00 0.00 0.00 1.52
1201 1686 8.360390 TGCATCTCATGTATCTAGACGTATTTT 58.640 33.333 0.00 0.00 0.00 1.82
1202 1687 7.810282 GTGCATCTCATGTATCTAGACGTATTT 59.190 37.037 0.00 0.00 0.00 1.40
1203 1688 7.309177 GTGCATCTCATGTATCTAGACGTATT 58.691 38.462 0.00 0.00 0.00 1.89
1204 1689 6.402658 CGTGCATCTCATGTATCTAGACGTAT 60.403 42.308 0.00 0.00 0.00 3.06
1205 1690 5.107065 CGTGCATCTCATGTATCTAGACGTA 60.107 44.000 0.00 0.00 0.00 3.57
1206 1691 4.319839 CGTGCATCTCATGTATCTAGACGT 60.320 45.833 0.00 0.00 0.00 4.34
1207 1692 4.154717 CGTGCATCTCATGTATCTAGACG 58.845 47.826 0.00 0.00 0.00 4.18
1208 1693 3.917380 GCGTGCATCTCATGTATCTAGAC 59.083 47.826 0.00 0.00 34.19 2.59
1209 1694 3.569701 TGCGTGCATCTCATGTATCTAGA 59.430 43.478 0.00 0.00 34.19 2.43
1210 1695 3.672397 GTGCGTGCATCTCATGTATCTAG 59.328 47.826 0.00 0.00 34.19 2.43
1211 1696 3.068024 TGTGCGTGCATCTCATGTATCTA 59.932 43.478 0.00 0.00 34.19 1.98
1212 1697 2.159057 TGTGCGTGCATCTCATGTATCT 60.159 45.455 0.00 0.00 34.19 1.98
1213 1698 2.204237 TGTGCGTGCATCTCATGTATC 58.796 47.619 0.00 0.00 34.19 2.24
1214 1699 2.314323 TGTGCGTGCATCTCATGTAT 57.686 45.000 0.00 0.00 34.19 2.29
1215 1700 2.314323 ATGTGCGTGCATCTCATGTA 57.686 45.000 0.00 0.00 34.19 2.29
1216 1701 2.314323 TATGTGCGTGCATCTCATGT 57.686 45.000 13.34 0.23 34.19 3.21
1217 1702 3.678915 TTTATGTGCGTGCATCTCATG 57.321 42.857 13.34 0.00 34.80 3.07
1218 1703 4.096833 ACATTTTATGTGCGTGCATCTCAT 59.903 37.500 0.00 0.63 43.01 2.90
1219 1704 3.439825 ACATTTTATGTGCGTGCATCTCA 59.560 39.130 0.00 0.00 43.01 3.27
1220 1705 4.019919 ACATTTTATGTGCGTGCATCTC 57.980 40.909 0.00 0.00 43.01 2.75
1221 1706 3.181497 GGACATTTTATGTGCGTGCATCT 60.181 43.478 0.00 0.00 45.03 2.90
1222 1707 3.108144 GGACATTTTATGTGCGTGCATC 58.892 45.455 0.00 0.00 45.03 3.91
1223 1708 3.149436 GGACATTTTATGTGCGTGCAT 57.851 42.857 0.00 0.12 45.03 3.96
1224 1709 2.627863 GGACATTTTATGTGCGTGCA 57.372 45.000 0.00 0.00 45.03 4.57
1229 1714 6.599437 GTGTATATCCGGACATTTTATGTGC 58.401 40.000 6.12 0.00 45.03 4.57
1230 1715 6.617741 GCGTGTATATCCGGACATTTTATGTG 60.618 42.308 6.12 0.00 45.03 3.21
1232 1717 5.444087 CGCGTGTATATCCGGACATTTTATG 60.444 44.000 6.12 0.00 0.00 1.90
1233 1718 4.624024 CGCGTGTATATCCGGACATTTTAT 59.376 41.667 6.12 2.53 0.00 1.40
1234 1719 3.982701 CGCGTGTATATCCGGACATTTTA 59.017 43.478 6.12 0.00 0.00 1.52
1235 1720 2.798283 CGCGTGTATATCCGGACATTTT 59.202 45.455 6.12 0.00 0.00 1.82
1236 1721 2.400399 CGCGTGTATATCCGGACATTT 58.600 47.619 6.12 0.00 0.00 2.32
1237 1722 1.336517 CCGCGTGTATATCCGGACATT 60.337 52.381 6.12 0.00 43.20 2.71
1238 1723 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.000 6.12 2.01 43.20 3.06
1239 1724 1.655885 CCGCGTGTATATCCGGACA 59.344 57.895 6.12 0.00 43.20 4.02
1240 1725 1.080974 CCCGCGTGTATATCCGGAC 60.081 63.158 6.12 0.00 43.20 4.79
1241 1726 2.270257 CCCCGCGTGTATATCCGGA 61.270 63.158 6.61 6.61 43.20 5.14
1242 1727 2.091102 AACCCCGCGTGTATATCCGG 62.091 60.000 4.92 0.00 40.39 5.14
1243 1728 0.249573 AAACCCCGCGTGTATATCCG 60.250 55.000 4.92 0.00 0.00 4.18
1244 1729 1.957668 AAAACCCCGCGTGTATATCC 58.042 50.000 4.92 0.00 0.00 2.59
1245 1730 2.679336 ACAAAAACCCCGCGTGTATATC 59.321 45.455 4.92 0.00 0.00 1.63
1246 1731 2.713877 ACAAAAACCCCGCGTGTATAT 58.286 42.857 4.92 0.00 0.00 0.86
1247 1732 2.181954 ACAAAAACCCCGCGTGTATA 57.818 45.000 4.92 0.00 0.00 1.47
1248 1733 1.320507 AACAAAAACCCCGCGTGTAT 58.679 45.000 4.92 0.00 0.00 2.29
1249 1734 1.065251 GAAACAAAAACCCCGCGTGTA 59.935 47.619 4.92 0.00 0.00 2.90
1250 1735 0.179132 GAAACAAAAACCCCGCGTGT 60.179 50.000 4.92 0.00 0.00 4.49
1251 1736 1.203600 CGAAACAAAAACCCCGCGTG 61.204 55.000 4.92 0.00 0.00 5.34
1252 1737 1.064458 CGAAACAAAAACCCCGCGT 59.936 52.632 4.92 0.00 0.00 6.01
1253 1738 0.248539 TTCGAAACAAAAACCCCGCG 60.249 50.000 0.00 0.00 0.00 6.46
1254 1739 2.143008 ATTCGAAACAAAAACCCCGC 57.857 45.000 0.00 0.00 0.00 6.13
1255 1740 5.063564 TGAAAAATTCGAAACAAAAACCCCG 59.936 36.000 0.00 0.00 0.00 5.73
1256 1741 6.424176 TGAAAAATTCGAAACAAAAACCCC 57.576 33.333 0.00 0.00 0.00 4.95
1257 1742 7.523219 AGTTGAAAAATTCGAAACAAAAACCC 58.477 30.769 0.00 0.00 0.00 4.11
1258 1743 8.942669 AAGTTGAAAAATTCGAAACAAAAACC 57.057 26.923 0.00 0.00 18.72 3.27
1261 1746 9.307451 CGAAAAGTTGAAAAATTCGAAACAAAA 57.693 25.926 0.00 0.00 39.49 2.44
1262 1747 8.700644 TCGAAAAGTTGAAAAATTCGAAACAAA 58.299 25.926 0.00 0.00 41.45 2.83
1263 1748 8.228921 TCGAAAAGTTGAAAAATTCGAAACAA 57.771 26.923 0.00 1.78 41.45 2.83
1264 1749 7.798486 TCGAAAAGTTGAAAAATTCGAAACA 57.202 28.000 0.00 0.00 41.45 2.83
1267 1752 8.865001 ACATTTCGAAAAGTTGAAAAATTCGAA 58.135 25.926 15.66 15.15 46.30 3.71
1268 1753 8.401046 ACATTTCGAAAAGTTGAAAAATTCGA 57.599 26.923 15.66 4.96 42.14 3.71
1287 1772 8.556194 TGCACCTATTGTCGAAATATACATTTC 58.444 33.333 0.00 0.00 44.44 2.17
1288 1773 8.445275 TGCACCTATTGTCGAAATATACATTT 57.555 30.769 0.00 0.00 37.06 2.32
1289 1774 8.621532 ATGCACCTATTGTCGAAATATACATT 57.378 30.769 0.00 0.00 0.00 2.71
1290 1775 9.890629 ATATGCACCTATTGTCGAAATATACAT 57.109 29.630 0.00 0.00 0.00 2.29
1291 1776 9.150348 CATATGCACCTATTGTCGAAATATACA 57.850 33.333 0.00 0.00 0.00 2.29
1292 1777 8.116753 GCATATGCACCTATTGTCGAAATATAC 58.883 37.037 22.84 0.00 41.59 1.47
1293 1778 8.196802 GCATATGCACCTATTGTCGAAATATA 57.803 34.615 22.84 0.00 41.59 0.86
1294 1779 7.076842 GCATATGCACCTATTGTCGAAATAT 57.923 36.000 22.84 0.00 41.59 1.28
1295 1780 6.480524 GCATATGCACCTATTGTCGAAATA 57.519 37.500 22.84 0.00 41.59 1.40
1296 1781 5.362556 GCATATGCACCTATTGTCGAAAT 57.637 39.130 22.84 0.00 41.59 2.17
1297 1782 4.811555 GCATATGCACCTATTGTCGAAA 57.188 40.909 22.84 0.00 41.59 3.46
1311 1796 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
1312 1797 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
1313 1798 2.107204 CCTTTGGCTCCTAGGTGCATAT 59.893 50.000 31.19 0.00 36.47 1.78
1314 1799 1.490490 CCTTTGGCTCCTAGGTGCATA 59.510 52.381 31.19 19.50 36.47 3.14
1315 1800 0.257039 CCTTTGGCTCCTAGGTGCAT 59.743 55.000 31.19 0.00 36.47 3.96
1316 1801 1.685224 CCTTTGGCTCCTAGGTGCA 59.315 57.895 31.19 17.76 36.47 4.57
1317 1802 1.750780 GCCTTTGGCTCCTAGGTGC 60.751 63.158 24.68 24.68 46.69 5.01
1318 1803 4.645809 GCCTTTGGCTCCTAGGTG 57.354 61.111 9.08 7.68 46.69 4.00
1328 1813 1.463674 AGAGCGGTAATTGCCTTTGG 58.536 50.000 11.07 0.00 0.00 3.28
1329 1814 3.531538 TCTAGAGCGGTAATTGCCTTTG 58.468 45.455 11.07 0.00 0.00 2.77
1330 1815 3.906720 TCTAGAGCGGTAATTGCCTTT 57.093 42.857 11.07 0.00 0.00 3.11
1331 1816 4.344102 TGTATCTAGAGCGGTAATTGCCTT 59.656 41.667 11.07 0.00 0.00 4.35
1332 1817 3.895656 TGTATCTAGAGCGGTAATTGCCT 59.104 43.478 11.07 0.00 0.00 4.75
1333 1818 4.252971 TGTATCTAGAGCGGTAATTGCC 57.747 45.455 1.83 1.83 0.00 4.52
1334 1819 6.787085 AAATGTATCTAGAGCGGTAATTGC 57.213 37.500 0.00 0.00 0.00 3.56
1335 1820 8.594881 AGAAAATGTATCTAGAGCGGTAATTG 57.405 34.615 0.00 0.00 0.00 2.32
1336 1821 9.614792 AAAGAAAATGTATCTAGAGCGGTAATT 57.385 29.630 0.00 0.00 0.00 1.40
1337 1822 9.614792 AAAAGAAAATGTATCTAGAGCGGTAAT 57.385 29.630 0.00 0.00 0.00 1.89
1340 1825 9.614792 AATAAAAGAAAATGTATCTAGAGCGGT 57.385 29.630 0.00 0.00 0.00 5.68
1364 1849 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
1365 1850 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1366 1851 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1367 1852 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1368 1853 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1369 1854 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1370 1855 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1371 1856 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1372 1857 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1373 1858 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1374 1859 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1375 1860 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1376 1861 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1377 1862 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1378 1863 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1379 1864 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1380 1865 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1381 1866 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1382 1867 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1383 1868 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
1384 1869 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
1385 1870 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1386 1871 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
1387 1872 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1388 1873 1.978454 ATTAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
1389 1874 5.452496 GGTTTAATTAGTACTCCCTCCGTCC 60.452 48.000 0.00 0.00 0.00 4.79
1390 1875 5.362143 AGGTTTAATTAGTACTCCCTCCGTC 59.638 44.000 0.00 0.00 0.00 4.79
1391 1876 5.128335 CAGGTTTAATTAGTACTCCCTCCGT 59.872 44.000 0.00 0.00 0.00 4.69
1392 1877 5.128335 ACAGGTTTAATTAGTACTCCCTCCG 59.872 44.000 0.00 0.00 0.00 4.63
1393 1878 6.407865 GGACAGGTTTAATTAGTACTCCCTCC 60.408 46.154 0.00 0.00 0.00 4.30
1394 1879 6.155737 TGGACAGGTTTAATTAGTACTCCCTC 59.844 42.308 0.00 0.00 0.00 4.30
1395 1880 6.027482 TGGACAGGTTTAATTAGTACTCCCT 58.973 40.000 0.00 0.00 0.00 4.20
1396 1881 6.111382 GTGGACAGGTTTAATTAGTACTCCC 58.889 44.000 0.00 0.00 0.00 4.30
1397 1882 5.809051 CGTGGACAGGTTTAATTAGTACTCC 59.191 44.000 0.00 0.00 0.00 3.85
1398 1883 5.809051 CCGTGGACAGGTTTAATTAGTACTC 59.191 44.000 0.00 0.00 0.00 2.59
1399 1884 5.246883 ACCGTGGACAGGTTTAATTAGTACT 59.753 40.000 0.00 0.00 39.29 2.73
1400 1885 5.482006 ACCGTGGACAGGTTTAATTAGTAC 58.518 41.667 0.00 0.00 39.29 2.73
1401 1886 5.622007 CGACCGTGGACAGGTTTAATTAGTA 60.622 44.000 0.00 0.00 43.01 1.82
1402 1887 4.572909 GACCGTGGACAGGTTTAATTAGT 58.427 43.478 0.00 0.00 43.01 2.24
1403 1888 3.615496 CGACCGTGGACAGGTTTAATTAG 59.385 47.826 0.00 0.00 43.01 1.73
1404 1889 3.257873 TCGACCGTGGACAGGTTTAATTA 59.742 43.478 0.00 0.00 43.01 1.40
1405 1890 2.037511 TCGACCGTGGACAGGTTTAATT 59.962 45.455 0.00 0.00 43.01 1.40
1406 1891 1.619827 TCGACCGTGGACAGGTTTAAT 59.380 47.619 0.00 0.00 43.01 1.40
1407 1892 1.039068 TCGACCGTGGACAGGTTTAA 58.961 50.000 0.00 0.00 43.01 1.52
1496 2022 4.175787 AGAACTTTACTCTGCTACCACG 57.824 45.455 0.00 0.00 0.00 4.94
1522 2050 7.010923 TGCATGTGAACAAATTTAACTTCCAAC 59.989 33.333 0.00 0.00 0.00 3.77
1668 2209 0.323957 GCGGAGTAGTTCTTGGGGTT 59.676 55.000 0.00 0.00 0.00 4.11
1690 2234 4.398358 TGTTGATTTTTGTACCGTTGGTGA 59.602 37.500 0.00 0.00 36.19 4.02
1726 2270 0.938168 GGCCGGTCGATCGATTGTAC 60.938 60.000 21.90 8.27 0.00 2.90
1729 2273 2.661866 GGGCCGGTCGATCGATTG 60.662 66.667 21.90 16.04 0.00 2.67
1732 2276 2.451928 TTTTTGGGCCGGTCGATCGA 62.452 55.000 21.90 15.15 0.00 3.59
1754 2315 9.465985 AAGAAAAGTTTTGTTTCGTTTCAGTTA 57.534 25.926 5.36 0.00 39.48 2.24
1778 2364 1.006571 CAGCCCTGCAAGCAACAAG 60.007 57.895 10.73 0.00 0.00 3.16
1779 2365 1.042003 TTCAGCCCTGCAAGCAACAA 61.042 50.000 10.73 0.00 0.00 2.83
1780 2366 1.455402 TTCAGCCCTGCAAGCAACA 60.455 52.632 10.73 0.00 0.00 3.33
1781 2367 1.288127 CTTCAGCCCTGCAAGCAAC 59.712 57.895 10.73 0.00 0.00 4.17
1782 2368 2.567497 GCTTCAGCCCTGCAAGCAA 61.567 57.895 18.71 0.00 40.29 3.91
1783 2369 2.987547 GCTTCAGCCCTGCAAGCA 60.988 61.111 18.71 0.00 40.29 3.91
1895 2481 4.477975 GCCGACTCCACCGTCTCG 62.478 72.222 0.00 0.00 0.00 4.04
2142 2747 4.840772 CACTTAAACATTCGAAGAGCAACG 59.159 41.667 3.35 0.00 38.43 4.10
2143 2748 5.147162 CCACTTAAACATTCGAAGAGCAAC 58.853 41.667 3.35 0.00 38.43 4.17
2175 2831 7.101700 TCATCAACCTATCATATCATCACAGC 58.898 38.462 0.00 0.00 0.00 4.40
2184 2840 5.846164 TGGTGTCCTCATCAACCTATCATAT 59.154 40.000 0.00 0.00 31.11 1.78
2185 2841 5.215845 TGGTGTCCTCATCAACCTATCATA 58.784 41.667 0.00 0.00 31.11 2.15
2312 2970 0.464870 CTCCTCTCATCACAGGGCAG 59.535 60.000 0.00 0.00 0.00 4.85
2332 2990 2.797866 TTCGGTCGCGCTTCAGTCTC 62.798 60.000 5.56 0.00 0.00 3.36
2333 2991 2.214181 ATTCGGTCGCGCTTCAGTCT 62.214 55.000 5.56 0.00 0.00 3.24
2334 2992 1.743855 GATTCGGTCGCGCTTCAGTC 61.744 60.000 5.56 0.00 0.00 3.51
2348 3006 2.222796 ACATGCATGTTTCGTCGATTCG 60.223 45.455 26.61 0.00 37.90 3.34
2409 3068 5.723295 ACATTTCTTGGCATTACATGGAAC 58.277 37.500 0.00 0.00 0.00 3.62
2467 3129 8.803201 AGCAGTGAAGCTAGAAAATTTAAAAC 57.197 30.769 0.00 0.00 44.50 2.43
2482 3144 2.093235 AGAAGTGGGATAGCAGTGAAGC 60.093 50.000 0.00 0.00 0.00 3.86
2483 3145 3.902881 AGAAGTGGGATAGCAGTGAAG 57.097 47.619 0.00 0.00 0.00 3.02
2485 3147 3.982516 ACTAGAAGTGGGATAGCAGTGA 58.017 45.455 0.00 0.00 0.00 3.41
2486 3148 4.744795 AACTAGAAGTGGGATAGCAGTG 57.255 45.455 0.00 0.00 0.00 3.66
2514 3181 2.254546 CGCCTAGCATCACCCATTTA 57.745 50.000 0.00 0.00 0.00 1.40
2544 3211 1.134098 GGACCAATCGTGATCATGGGT 60.134 52.381 14.91 13.62 37.26 4.51
2549 3216 1.674519 CGGTTGGACCAATCGTGATCA 60.675 52.381 28.18 0.00 42.18 2.92
2550 3217 1.006832 CGGTTGGACCAATCGTGATC 58.993 55.000 28.18 6.00 42.18 2.92
2551 3218 3.153024 CGGTTGGACCAATCGTGAT 57.847 52.632 28.18 0.00 42.18 3.06
2568 3235 2.431057 AGGTAGGGATCAAACAGCTACG 59.569 50.000 0.00 0.00 0.00 3.51
2590 3257 2.038557 GCAGTGGAAAGAGGACAAGGTA 59.961 50.000 0.00 0.00 0.00 3.08
2596 3263 2.550830 TGAAGCAGTGGAAAGAGGAC 57.449 50.000 0.00 0.00 0.00 3.85
2605 3272 1.740380 CGTAGTGGGATGAAGCAGTGG 60.740 57.143 0.00 0.00 0.00 4.00
2609 3276 1.476891 GACTCGTAGTGGGATGAAGCA 59.523 52.381 0.00 0.00 0.00 3.91
2610 3277 1.751924 AGACTCGTAGTGGGATGAAGC 59.248 52.381 0.00 0.00 0.00 3.86
2615 3282 2.657143 GAGGAAGACTCGTAGTGGGAT 58.343 52.381 0.00 0.00 36.29 3.85
2640 3307 0.667792 GCGAGCGACAAAGGAGAAGT 60.668 55.000 0.00 0.00 0.00 3.01
2662 3329 2.358737 GAAGGCACGAGGTGGGTG 60.359 66.667 0.00 0.00 38.42 4.61
2663 3330 3.637273 GGAAGGCACGAGGTGGGT 61.637 66.667 0.00 0.00 33.64 4.51
2664 3331 4.410400 GGGAAGGCACGAGGTGGG 62.410 72.222 0.00 0.00 33.64 4.61
2665 3332 4.760047 CGGGAAGGCACGAGGTGG 62.760 72.222 0.00 0.00 45.89 4.61
2683 3350 2.887568 GAGCATGACGGCGAGGTG 60.888 66.667 16.62 9.86 39.27 4.00
2684 3351 4.498520 CGAGCATGACGGCGAGGT 62.499 66.667 16.62 5.81 39.27 3.85
2686 3353 4.862092 AGCGAGCATGACGGCGAG 62.862 66.667 16.62 0.95 39.27 5.03
2689 3356 4.819761 TCCAGCGAGCATGACGGC 62.820 66.667 12.96 4.85 0.00 5.68
2690 3357 2.004808 TACTCCAGCGAGCATGACGG 62.005 60.000 12.96 1.29 40.03 4.79
2691 3358 0.179137 TTACTCCAGCGAGCATGACG 60.179 55.000 0.00 2.24 40.03 4.35
2692 3359 2.010145 TTTACTCCAGCGAGCATGAC 57.990 50.000 0.00 0.00 40.03 3.06
2693 3360 2.938451 CAATTTACTCCAGCGAGCATGA 59.062 45.455 0.00 0.00 40.03 3.07
2694 3361 2.540361 GCAATTTACTCCAGCGAGCATG 60.540 50.000 0.00 0.00 40.03 4.06
2695 3362 1.672881 GCAATTTACTCCAGCGAGCAT 59.327 47.619 0.00 0.00 40.03 3.79
2696 3363 1.086696 GCAATTTACTCCAGCGAGCA 58.913 50.000 0.00 0.00 40.03 4.26
2697 3364 1.086696 TGCAATTTACTCCAGCGAGC 58.913 50.000 0.00 0.00 40.03 5.03
2698 3365 2.076100 TGTGCAATTTACTCCAGCGAG 58.924 47.619 0.00 0.00 42.32 5.03
2699 3366 2.076100 CTGTGCAATTTACTCCAGCGA 58.924 47.619 0.00 0.00 0.00 4.93
2700 3367 2.076100 TCTGTGCAATTTACTCCAGCG 58.924 47.619 0.00 0.00 0.00 5.18
2726 3393 4.041444 TCTGCTTTTAATGCCCCAATTGTT 59.959 37.500 4.43 0.00 0.00 2.83
2741 3408 6.870769 CCAATCTTGGTATCAATCTGCTTTT 58.129 36.000 0.55 0.00 43.43 2.27
2742 3409 6.461110 CCAATCTTGGTATCAATCTGCTTT 57.539 37.500 0.55 0.00 43.43 3.51
2907 3575 4.385405 AGTCAGCGCCCAGTCAGC 62.385 66.667 2.29 0.00 0.00 4.26
2908 3576 2.433838 CAGTCAGCGCCCAGTCAG 60.434 66.667 2.29 0.00 0.00 3.51
2909 3577 4.007644 CCAGTCAGCGCCCAGTCA 62.008 66.667 2.29 0.00 0.00 3.41
2910 3578 4.767255 CCCAGTCAGCGCCCAGTC 62.767 72.222 2.29 0.00 0.00 3.51
2912 3580 4.767255 GTCCCAGTCAGCGCCCAG 62.767 72.222 2.29 0.00 0.00 4.45
2915 3583 4.803426 CTCGTCCCAGTCAGCGCC 62.803 72.222 2.29 0.00 0.00 6.53
2991 3681 1.078143 AATGAAGCAGAGCGGGGTC 60.078 57.895 0.00 0.00 0.00 4.46
2992 3682 1.078143 GAATGAAGCAGAGCGGGGT 60.078 57.895 0.00 0.00 0.00 4.95
2993 3683 1.094073 CAGAATGAAGCAGAGCGGGG 61.094 60.000 0.00 0.00 39.69 5.73
2997 3687 0.651551 CGAGCAGAATGAAGCAGAGC 59.348 55.000 0.00 0.00 39.69 4.09
2998 3688 0.651551 GCGAGCAGAATGAAGCAGAG 59.348 55.000 0.00 0.00 39.69 3.35
2999 3689 0.037046 TGCGAGCAGAATGAAGCAGA 60.037 50.000 0.00 0.00 39.69 4.26
3000 3690 0.096628 GTGCGAGCAGAATGAAGCAG 59.903 55.000 0.00 0.00 40.63 4.24
3001 3691 1.300971 GGTGCGAGCAGAATGAAGCA 61.301 55.000 0.00 0.00 39.69 3.91
3002 3692 1.427020 GGTGCGAGCAGAATGAAGC 59.573 57.895 0.00 0.00 39.69 3.86
3007 3697 2.185350 CGAGGGTGCGAGCAGAAT 59.815 61.111 0.00 0.00 0.00 2.40
3295 4051 1.206610 TCGTCCTCGCTACTGTACTCT 59.793 52.381 0.00 0.00 36.96 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.