Multiple sequence alignment - TraesCS1B01G466100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G466100 chr1B 100.000 2640 0 0 1 2640 676740598 676737959 0.000000e+00 4876.0
1 TraesCS1B01G466100 chr1B 85.106 235 19 10 1648 1867 676774997 676774764 2.640000e-55 226.0
2 TraesCS1B01G466100 chr1A 81.878 905 77 42 1015 1849 583587705 583586818 0.000000e+00 682.0
3 TraesCS1B01G466100 chr1A 88.840 457 42 5 1950 2397 583586738 583586282 1.070000e-153 553.0
4 TraesCS1B01G466100 chr1A 86.468 436 48 6 1 428 583590273 583589841 3.980000e-128 468.0
5 TraesCS1B01G466100 chr1A 88.770 187 16 3 2411 2597 583586145 583585964 9.510000e-55 224.0
6 TraesCS1B01G466100 chr1A 83.051 236 22 10 1648 1867 583659517 583659284 5.760000e-47 198.0
7 TraesCS1B01G466100 chr1A 94.118 85 2 1 1681 1765 537817736 537817817 2.760000e-25 126.0
8 TraesCS1B01G466100 chr1A 81.579 114 11 7 1761 1867 583658992 583658882 4.680000e-13 86.1
9 TraesCS1B01G466100 chr1D 86.042 523 43 15 1019 1532 486007468 486006967 3.870000e-148 534.0
10 TraesCS1B01G466100 chr1D 85.435 460 41 11 1950 2397 486006472 486006027 3.100000e-124 455.0
11 TraesCS1B01G466100 chr1D 87.843 255 30 1 122 376 486007966 486007713 5.520000e-77 298.0
12 TraesCS1B01G466100 chr1D 83.387 313 34 10 1648 1953 486006801 486006500 9.310000e-70 274.0
13 TraesCS1B01G466100 chr1D 90.148 203 11 4 816 1014 486007700 486007503 3.370000e-64 255.0
14 TraesCS1B01G466100 chr1D 88.770 187 15 4 2411 2597 486005865 486005685 9.510000e-55 224.0
15 TraesCS1B01G466100 chr1D 84.141 227 16 12 1657 1867 486065964 486065742 4.460000e-48 202.0
16 TraesCS1B01G466100 chr3D 82.058 379 51 12 1056 1418 157216426 157216803 9.180000e-80 307.0
17 TraesCS1B01G466100 chr2D 100.000 77 0 0 1681 1757 510217090 510217166 2.740000e-30 143.0
18 TraesCS1B01G466100 chr3B 97.436 78 2 0 1678 1755 519858197 519858120 1.650000e-27 134.0
19 TraesCS1B01G466100 chr3B 97.872 47 0 1 2594 2640 762402890 762402845 2.180000e-11 80.5
20 TraesCS1B01G466100 chr3A 98.649 74 1 0 1684 1757 514622408 514622335 5.930000e-27 132.0
21 TraesCS1B01G466100 chr4A 80.000 150 22 5 510 653 543335486 543335633 1.290000e-18 104.0
22 TraesCS1B01G466100 chr5A 97.917 48 1 0 2593 2640 614328932 614328885 1.680000e-12 84.2
23 TraesCS1B01G466100 chrUn 97.872 47 1 0 2593 2639 66391588 66391542 6.060000e-12 82.4
24 TraesCS1B01G466100 chr7B 97.872 47 1 0 2594 2640 639285568 639285614 6.060000e-12 82.4
25 TraesCS1B01G466100 chr7B 95.918 49 0 1 2591 2639 729813492 729813538 7.830000e-11 78.7
26 TraesCS1B01G466100 chr5B 97.917 48 0 1 2593 2640 21638066 21638020 6.060000e-12 82.4
27 TraesCS1B01G466100 chr2B 97.872 47 1 0 2594 2640 128340175 128340129 6.060000e-12 82.4
28 TraesCS1B01G466100 chr2B 97.826 46 1 0 2595 2640 449165798 449165753 2.180000e-11 80.5
29 TraesCS1B01G466100 chr6B 97.872 47 0 1 2594 2640 680510257 680510302 2.180000e-11 80.5
30 TraesCS1B01G466100 chr4D 92.308 52 2 2 520 570 53843258 53843208 3.650000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G466100 chr1B 676737959 676740598 2639 True 4876.00 4876 100.0000 1 2640 1 chr1B.!!$R1 2639
1 TraesCS1B01G466100 chr1A 583585964 583590273 4309 True 481.75 682 86.4890 1 2597 4 chr1A.!!$R1 2596
2 TraesCS1B01G466100 chr1D 486005685 486007966 2281 True 340.00 534 86.9375 122 2597 6 chr1D.!!$R2 2475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 393 0.102481 CGAGGTCCTTATCCGTGGTG 59.898 60.0 0.0 0.0 0.0 4.17 F
431 440 0.176680 CGGACTGGGAGACATTGGAG 59.823 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 2867 0.254178 CAGTACTGAGGGCAAGCCAT 59.746 55.0 18.45 5.49 37.98 4.40 R
2100 3830 0.618458 CCTGAGATTCCCCGGTCAAA 59.382 55.0 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.562609 GGGTTGGGCCTTATCTGTGTTTA 60.563 47.826 4.53 0.00 37.43 2.01
63 64 7.710676 TTTACTAGGCTGCCAAATTATTTCA 57.289 32.000 22.65 0.00 0.00 2.69
68 69 3.384467 GGCTGCCAAATTATTTCAGGCTA 59.616 43.478 15.17 7.73 45.42 3.93
71 72 6.051074 GCTGCCAAATTATTTCAGGCTATTT 58.949 36.000 16.48 0.00 45.42 1.40
77 78 7.926018 CCAAATTATTTCAGGCTATTTGGGTAC 59.074 37.037 21.59 0.00 45.77 3.34
79 80 7.823745 ATTATTTCAGGCTATTTGGGTACTG 57.176 36.000 0.00 0.00 0.00 2.74
85 94 2.017049 GCTATTTGGGTACTGTGGCTG 58.983 52.381 0.00 0.00 0.00 4.85
92 101 0.392595 GGTACTGTGGCTGCTTACCC 60.393 60.000 0.00 0.00 0.00 3.69
101 110 2.237643 TGGCTGCTTACCCGAATTTCTA 59.762 45.455 0.00 0.00 0.00 2.10
103 112 3.692593 GGCTGCTTACCCGAATTTCTAAA 59.307 43.478 0.00 0.00 0.00 1.85
105 114 5.336134 GGCTGCTTACCCGAATTTCTAAAAA 60.336 40.000 0.00 0.00 0.00 1.94
153 162 0.103208 CGATCTAGTGCTCGGGCTTT 59.897 55.000 9.62 0.00 39.59 3.51
189 198 2.112190 TGGGTTTGGGTTCAGGTTTTC 58.888 47.619 0.00 0.00 0.00 2.29
218 227 2.172082 AGGCTTAGGGTATCGGGTTTTC 59.828 50.000 0.00 0.00 0.00 2.29
261 270 1.065551 GGTTTTATGCCCATCGTGAGC 59.934 52.381 0.00 0.00 0.00 4.26
312 321 4.250464 CGTTATCAACCTTTGCTCCAGTA 58.750 43.478 0.00 0.00 0.00 2.74
322 331 1.334160 TGCTCCAGTAACTCCGACAA 58.666 50.000 0.00 0.00 0.00 3.18
323 332 1.899814 TGCTCCAGTAACTCCGACAAT 59.100 47.619 0.00 0.00 0.00 2.71
330 339 2.818432 AGTAACTCCGACAATGACGACT 59.182 45.455 6.69 0.00 0.00 4.18
376 385 3.912907 CCGCGGCGAGGTCCTTAT 61.913 66.667 25.92 0.00 0.00 1.73
378 387 2.029221 GCGGCGAGGTCCTTATCC 59.971 66.667 12.98 0.00 0.00 2.59
383 392 1.673808 GCGAGGTCCTTATCCGTGGT 61.674 60.000 0.00 0.00 0.00 4.16
384 393 0.102481 CGAGGTCCTTATCCGTGGTG 59.898 60.000 0.00 0.00 0.00 4.17
385 394 1.481871 GAGGTCCTTATCCGTGGTGA 58.518 55.000 0.00 0.00 0.00 4.02
409 418 1.069204 AGAAGACACGCTGCTTTCTGA 59.931 47.619 0.00 0.00 0.00 3.27
422 431 2.898705 CTTTCTGAATCGGACTGGGAG 58.101 52.381 0.00 0.00 0.00 4.30
428 437 2.093500 TGAATCGGACTGGGAGACATTG 60.093 50.000 0.00 0.00 0.00 2.82
429 438 0.833287 ATCGGACTGGGAGACATTGG 59.167 55.000 0.00 0.00 0.00 3.16
430 439 0.252057 TCGGACTGGGAGACATTGGA 60.252 55.000 0.00 0.00 0.00 3.53
431 440 0.176680 CGGACTGGGAGACATTGGAG 59.823 60.000 0.00 0.00 0.00 3.86
432 441 1.573108 GGACTGGGAGACATTGGAGA 58.427 55.000 0.00 0.00 0.00 3.71
433 442 1.208293 GGACTGGGAGACATTGGAGAC 59.792 57.143 0.00 0.00 0.00 3.36
434 443 0.898320 ACTGGGAGACATTGGAGACG 59.102 55.000 0.00 0.00 0.00 4.18
435 444 1.186200 CTGGGAGACATTGGAGACGA 58.814 55.000 0.00 0.00 0.00 4.20
465 1940 7.634817 CGATGGCGAGTAGTTTTATTTAGTTTG 59.365 37.037 0.00 0.00 40.82 2.93
549 2091 8.795786 TGTAGTAGTTTGAATCAAATTTGCAC 57.204 30.769 11.87 8.32 35.74 4.57
563 2105 3.510388 TTTGCACCGAATTGTGTTGAA 57.490 38.095 0.00 0.00 38.52 2.69
598 2140 8.705048 AAGAGTTAAGTATTGAAGATCGGTTC 57.295 34.615 0.00 0.00 0.00 3.62
601 2143 6.973474 AGTTAAGTATTGAAGATCGGTTCGAG 59.027 38.462 0.00 0.00 39.91 4.04
602 2144 5.578005 AAGTATTGAAGATCGGTTCGAGA 57.422 39.130 0.00 0.00 39.91 4.04
604 2146 3.868757 ATTGAAGATCGGTTCGAGACA 57.131 42.857 0.00 0.00 39.91 3.41
605 2147 2.631418 TGAAGATCGGTTCGAGACAC 57.369 50.000 0.00 0.00 39.91 3.67
608 2150 0.526662 AGATCGGTTCGAGACACCAC 59.473 55.000 5.64 0.00 39.91 4.16
719 2261 4.540715 TGGAGATCAGTTAGAGATGCTCA 58.459 43.478 0.00 0.00 32.06 4.26
720 2262 4.958581 TGGAGATCAGTTAGAGATGCTCAA 59.041 41.667 0.00 0.00 32.06 3.02
744 2286 6.227298 AGTCCAGTCCAATTATACAGACAG 57.773 41.667 11.67 0.00 0.00 3.51
747 2289 5.719563 TCCAGTCCAATTATACAGACAGTGA 59.280 40.000 0.00 0.00 0.00 3.41
754 2296 7.658167 TCCAATTATACAGACAGTGAAAAACGA 59.342 33.333 0.00 0.00 0.00 3.85
785 2331 1.280206 GACCGTCCAAAAGTCCGTCG 61.280 60.000 0.00 0.00 0.00 5.12
807 2353 0.599558 GGTCAAATCAAGCTGCTGCA 59.400 50.000 18.42 0.88 42.74 4.41
808 2354 1.000060 GGTCAAATCAAGCTGCTGCAA 60.000 47.619 18.42 3.14 42.74 4.08
813 2359 3.955650 AATCAAGCTGCTGCAATTTCT 57.044 38.095 18.42 0.00 42.74 2.52
814 2360 5.047872 TCAAATCAAGCTGCTGCAATTTCTA 60.048 36.000 18.42 7.98 42.74 2.10
821 2367 4.335874 AGCTGCTGCAATTTCTATTGAGAG 59.664 41.667 18.42 0.00 43.12 3.20
850 2396 9.920946 AAATGTAGTCATGGTAGATTTATGGTT 57.079 29.630 8.46 0.00 34.19 3.67
884 2439 8.855110 CACTAGATCCATACAAAGTAGACATCT 58.145 37.037 0.00 0.00 0.00 2.90
885 2440 9.427821 ACTAGATCCATACAAAGTAGACATCTT 57.572 33.333 0.00 0.00 0.00 2.40
888 2443 8.762645 AGATCCATACAAAGTAGACATCTTGAA 58.237 33.333 0.00 0.00 0.00 2.69
889 2444 8.954950 ATCCATACAAAGTAGACATCTTGAAG 57.045 34.615 0.00 0.00 0.00 3.02
890 2445 7.331026 TCCATACAAAGTAGACATCTTGAAGG 58.669 38.462 0.00 0.00 0.00 3.46
891 2446 7.038302 TCCATACAAAGTAGACATCTTGAAGGT 60.038 37.037 0.00 0.00 0.00 3.50
892 2447 7.278868 CCATACAAAGTAGACATCTTGAAGGTC 59.721 40.741 0.00 0.00 38.98 3.85
945 2501 2.488153 ACTCCAAGCTACGAAAAATGGC 59.512 45.455 0.00 0.00 0.00 4.40
1073 2667 1.279271 GAGTACAGACATGGCCACCTT 59.721 52.381 8.16 0.00 0.00 3.50
1087 2681 1.905215 CCACCTTCAGACTCCACATCT 59.095 52.381 0.00 0.00 0.00 2.90
1171 2773 5.388225 TCAAAGCTTTGAAACGAATTTGC 57.612 34.783 34.01 0.00 43.62 3.68
1173 2775 5.580297 TCAAAGCTTTGAAACGAATTTGCTT 59.420 32.000 34.01 0.00 43.62 3.91
1176 2778 6.421377 AGCTTTGAAACGAATTTGCTTTTT 57.579 29.167 0.00 0.00 0.00 1.94
1178 2780 5.053091 GCTTTGAAACGAATTTGCTTTTTGC 60.053 36.000 0.00 0.00 43.25 3.68
1237 2843 1.150536 GGTGTTGTGCTTCTGGGGA 59.849 57.895 0.00 0.00 0.00 4.81
1238 2844 1.172812 GGTGTTGTGCTTCTGGGGAC 61.173 60.000 0.00 0.00 0.00 4.46
1247 2853 1.821136 GCTTCTGGGGACAAATCAAGG 59.179 52.381 0.00 0.00 42.06 3.61
1374 2980 3.741476 CCCAAAGGCTGCACGCTC 61.741 66.667 0.50 0.13 39.13 5.03
1381 2987 2.894387 GCTGCACGCTCCATCTCC 60.894 66.667 0.00 0.00 35.14 3.71
1386 2992 2.123251 ACGCTCCATCTCCCCGAT 60.123 61.111 0.00 0.00 0.00 4.18
1442 3048 5.861251 CAGAGTTCAGACAGTGATGTAACTC 59.139 44.000 20.88 20.88 38.70 3.01
1445 3059 4.521130 TCAGACAGTGATGTAACTCCAC 57.479 45.455 0.00 0.00 0.00 4.02
1460 3074 4.370182 CACGTATGGTGTGGTGCA 57.630 55.556 0.00 0.00 41.89 4.57
1465 3079 1.165270 GTATGGTGTGGTGCAAGACC 58.835 55.000 0.00 0.00 46.37 3.85
1495 3116 6.349280 GCTTGTCAAGGCAGTAATAATGTGAA 60.349 38.462 14.40 0.00 0.00 3.18
1496 3117 6.494893 TGTCAAGGCAGTAATAATGTGAAC 57.505 37.500 0.00 0.00 0.00 3.18
1502 3123 5.355350 AGGCAGTAATAATGTGAACAAGCTC 59.645 40.000 0.00 0.00 0.00 4.09
1529 3150 3.696281 TTGCGGATAAAGCATGTCATG 57.304 42.857 8.56 8.56 44.74 3.07
1532 3153 4.195416 TGCGGATAAAGCATGTCATGTAA 58.805 39.130 14.26 0.00 40.01 2.41
1533 3154 4.035091 TGCGGATAAAGCATGTCATGTAAC 59.965 41.667 14.26 0.00 40.01 2.50
1536 3157 6.728200 CGGATAAAGCATGTCATGTAACATT 58.272 36.000 14.26 5.59 37.78 2.71
1545 3166 9.511272 AGCATGTCATGTAACATTATATGATGT 57.489 29.630 14.26 7.28 41.29 3.06
1558 3210 2.787473 ATGATGTTTCCTTCCGCAGA 57.213 45.000 0.00 0.00 0.00 4.26
1561 3213 3.420893 TGATGTTTCCTTCCGCAGATTT 58.579 40.909 0.00 0.00 0.00 2.17
1571 3223 1.025041 CCGCAGATTTAAAGAGCCCC 58.975 55.000 0.00 0.00 0.00 5.80
1638 3290 2.498885 AGATGGTACCAACGGTAAGGAC 59.501 50.000 20.76 1.00 40.12 3.85
1639 3291 1.714541 TGGTACCAACGGTAAGGACA 58.285 50.000 13.60 1.01 40.12 4.02
1643 3323 4.285517 TGGTACCAACGGTAAGGACAATAA 59.714 41.667 13.60 0.00 40.12 1.40
1644 3324 5.221803 TGGTACCAACGGTAAGGACAATAAA 60.222 40.000 13.60 0.00 40.12 1.40
1646 3326 5.231702 ACCAACGGTAAGGACAATAAAGA 57.768 39.130 6.55 0.00 32.11 2.52
1653 3333 8.173542 ACGGTAAGGACAATAAAGAACAATTT 57.826 30.769 0.00 0.00 0.00 1.82
1754 3434 2.044650 GATCCTGGGCAGCAGCAA 60.045 61.111 2.65 0.00 44.61 3.91
1755 3435 1.679977 GATCCTGGGCAGCAGCAAA 60.680 57.895 2.65 0.00 44.61 3.68
1757 3437 1.041447 ATCCTGGGCAGCAGCAAATC 61.041 55.000 2.65 0.00 44.61 2.17
1786 3475 0.104672 TTTGACCCTGGTCCTCTGGA 60.105 55.000 13.59 0.00 43.97 3.86
1787 3476 0.119155 TTGACCCTGGTCCTCTGGAT 59.881 55.000 13.59 0.00 43.97 3.41
1789 3478 1.290134 GACCCTGGTCCTCTGGATTT 58.710 55.000 4.93 0.00 39.08 2.17
1790 3479 2.225779 TGACCCTGGTCCTCTGGATTTA 60.226 50.000 13.59 0.00 43.97 1.40
1795 3484 5.222547 ACCCTGGTCCTCTGGATTTATTTTT 60.223 40.000 0.00 0.00 36.68 1.94
1872 3561 9.979578 TCCATTAACGAACTAACTTTACAGTAA 57.020 29.630 0.00 0.00 30.68 2.24
1920 3609 4.202111 ACAACCTACAGCAAAAACCATCAC 60.202 41.667 0.00 0.00 0.00 3.06
1982 3703 2.814805 AACCATCATGTTCCTCAGGG 57.185 50.000 0.00 0.00 0.00 4.45
2058 3779 3.408853 GCCTTAGGCTTCCCCGGT 61.409 66.667 17.16 0.00 46.69 5.28
2063 3784 3.995809 TAGGCTTCCCCGGTCCCAG 62.996 68.421 0.00 0.00 39.21 4.45
2067 3788 2.039951 TTCCCCGGTCCCAGTAGG 59.960 66.667 0.00 0.00 0.00 3.18
2072 3793 1.196104 CCCGGTCCCAGTAGGTTCAA 61.196 60.000 0.00 0.00 36.75 2.69
2077 3798 2.039879 GGTCCCAGTAGGTTCAATGTGT 59.960 50.000 0.00 0.00 36.75 3.72
2083 3813 4.003648 CAGTAGGTTCAATGTGTTCCTCC 58.996 47.826 0.00 0.00 0.00 4.30
2092 3822 0.966920 TGTGTTCCTCCGTCTCTTCC 59.033 55.000 0.00 0.00 0.00 3.46
2100 3830 2.509336 CGTCTCTTCCGCGCCATT 60.509 61.111 0.00 0.00 0.00 3.16
2108 3838 4.474846 CCGCGCCATTTTGACCGG 62.475 66.667 0.00 0.00 0.00 5.28
2129 3859 2.224499 GGGAATCTCAGGCATTCTCCTC 60.224 54.545 0.00 0.00 33.25 3.71
2144 3874 2.892425 CTCTCCGTCCATTGCGCC 60.892 66.667 4.18 0.00 0.00 6.53
2191 3921 2.153898 CTGGGGTTCAATCCTGGGCA 62.154 60.000 0.00 0.00 0.00 5.36
2196 3926 0.610232 GTTCAATCCTGGGCAGCAGT 60.610 55.000 0.00 0.00 0.00 4.40
2235 3965 5.236263 CCATGTTTTCCTTTTTACTTGGCAC 59.764 40.000 0.00 0.00 31.70 5.01
2242 3972 8.466617 TTTCCTTTTTACTTGGCACTACAATA 57.533 30.769 0.00 0.00 0.00 1.90
2292 4022 2.711174 ACATAGGAGGGGCAGATGATT 58.289 47.619 0.00 0.00 0.00 2.57
2294 4024 4.242811 ACATAGGAGGGGCAGATGATTAA 58.757 43.478 0.00 0.00 0.00 1.40
2296 4026 3.584733 AGGAGGGGCAGATGATTAAAC 57.415 47.619 0.00 0.00 0.00 2.01
2340 4071 6.428159 AGACTGATTTTACTGTGAACCATGTC 59.572 38.462 0.00 0.00 0.00 3.06
2348 4079 0.865769 GTGAACCATGTCACACGGAC 59.134 55.000 0.00 0.00 46.00 4.79
2364 4095 3.756434 CACGGACACTGGGAATTACAAAT 59.244 43.478 0.00 0.00 0.00 2.32
2414 4306 7.504924 TTTTACTTGATGAACAACACCTAGG 57.495 36.000 7.41 7.41 34.56 3.02
2428 4320 2.766263 CACCTAGGCATTCACTCCACTA 59.234 50.000 9.30 0.00 0.00 2.74
2438 4330 5.683509 GCATTCACTCCACTAACTCTAGCAT 60.684 44.000 0.00 0.00 0.00 3.79
2439 4331 4.991153 TCACTCCACTAACTCTAGCATG 57.009 45.455 0.00 0.00 0.00 4.06
2480 4372 6.803154 AATAAAACTGGACTGAAGCACTAC 57.197 37.500 0.00 0.00 0.00 2.73
2494 4386 4.160736 AGCACTACGGAAAAGAAAATGC 57.839 40.909 0.00 0.00 0.00 3.56
2535 4427 4.644685 TCTTTTCCTTTTTGACTCCACCAG 59.355 41.667 0.00 0.00 0.00 4.00
2542 4434 0.321671 TTGACTCCACCAGCACTAGC 59.678 55.000 0.00 0.00 42.56 3.42
2543 4435 0.831711 TGACTCCACCAGCACTAGCA 60.832 55.000 0.00 0.00 45.49 3.49
2544 4436 0.539051 GACTCCACCAGCACTAGCAT 59.461 55.000 0.00 0.00 45.49 3.79
2545 4437 0.251354 ACTCCACCAGCACTAGCATG 59.749 55.000 0.00 0.00 45.49 4.06
2549 4441 1.081892 CACCAGCACTAGCATGACAC 58.918 55.000 0.00 0.00 45.49 3.67
2551 4443 1.081892 CCAGCACTAGCATGACACAC 58.918 55.000 0.00 0.00 45.49 3.82
2552 4444 1.608801 CCAGCACTAGCATGACACACA 60.609 52.381 0.00 0.00 45.49 3.72
2553 4445 1.730612 CAGCACTAGCATGACACACAG 59.269 52.381 0.00 0.00 45.49 3.66
2565 4457 6.881065 AGCATGACACACAGATAATAACACTT 59.119 34.615 0.00 0.00 0.00 3.16
2569 4461 6.649141 TGACACACAGATAATAACACTTGACC 59.351 38.462 0.00 0.00 0.00 4.02
2571 4463 5.867174 CACACAGATAATAACACTTGACCGA 59.133 40.000 0.00 0.00 0.00 4.69
2575 4467 5.580691 CAGATAATAACACTTGACCGAAGCA 59.419 40.000 0.00 0.00 34.68 3.91
2576 4468 5.581085 AGATAATAACACTTGACCGAAGCAC 59.419 40.000 0.00 0.00 34.68 4.40
2588 4480 1.197721 CCGAAGCACTGCGAAGAAATT 59.802 47.619 0.00 0.00 0.00 1.82
2592 4484 1.537202 AGCACTGCGAAGAAATTGTCC 59.463 47.619 0.00 0.00 0.00 4.02
2596 4488 4.610945 CACTGCGAAGAAATTGTCCTTTT 58.389 39.130 0.00 0.00 0.00 2.27
2597 4489 5.043248 CACTGCGAAGAAATTGTCCTTTTT 58.957 37.500 0.00 0.00 0.00 1.94
2615 4507 2.993449 TTTTTCGAACCGGGCATAAC 57.007 45.000 6.32 0.00 0.00 1.89
2616 4508 1.166989 TTTTCGAACCGGGCATAACC 58.833 50.000 6.32 0.00 37.93 2.85
2629 4521 3.910989 GGCATAACCCCTTTCCATTACT 58.089 45.455 0.00 0.00 0.00 2.24
2630 4522 3.636764 GGCATAACCCCTTTCCATTACTG 59.363 47.826 0.00 0.00 0.00 2.74
2631 4523 3.068165 GCATAACCCCTTTCCATTACTGC 59.932 47.826 0.00 0.00 0.00 4.40
2632 4524 1.834188 AACCCCTTTCCATTACTGCG 58.166 50.000 0.00 0.00 0.00 5.18
2633 4525 0.988832 ACCCCTTTCCATTACTGCGA 59.011 50.000 0.00 0.00 0.00 5.10
2634 4526 1.339727 ACCCCTTTCCATTACTGCGAC 60.340 52.381 0.00 0.00 0.00 5.19
2635 4527 1.339631 CCCCTTTCCATTACTGCGACA 60.340 52.381 0.00 0.00 0.00 4.35
2636 4528 2.643551 CCCTTTCCATTACTGCGACAT 58.356 47.619 0.00 0.00 0.00 3.06
2637 4529 3.433031 CCCCTTTCCATTACTGCGACATA 60.433 47.826 0.00 0.00 0.00 2.29
2638 4530 4.196193 CCCTTTCCATTACTGCGACATAA 58.804 43.478 0.00 0.00 0.00 1.90
2639 4531 4.035208 CCCTTTCCATTACTGCGACATAAC 59.965 45.833 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.126343 CGTAAACACAGATAAGGCCCAAC 59.874 47.826 0.00 0.00 0.00 3.77
45 46 2.169144 GCCTGAAATAATTTGGCAGCCT 59.831 45.455 14.15 0.00 37.95 4.58
63 64 1.064685 GCCACAGTACCCAAATAGCCT 60.065 52.381 0.00 0.00 0.00 4.58
68 69 0.405585 AGCAGCCACAGTACCCAAAT 59.594 50.000 0.00 0.00 0.00 2.32
71 72 0.323629 GTAAGCAGCCACAGTACCCA 59.676 55.000 0.00 0.00 0.00 4.51
77 78 0.392998 ATTCGGGTAAGCAGCCACAG 60.393 55.000 0.00 0.00 42.89 3.66
79 80 1.132453 GAAATTCGGGTAAGCAGCCAC 59.868 52.381 0.00 0.00 42.89 5.01
110 119 6.584488 GGGTAACAATTTTACAAACCTGGTT 58.416 36.000 6.18 6.18 39.74 3.67
111 120 5.221283 CGGGTAACAATTTTACAAACCTGGT 60.221 40.000 0.00 0.00 39.74 4.00
112 121 5.009811 TCGGGTAACAATTTTACAAACCTGG 59.990 40.000 0.00 0.00 39.74 4.45
150 159 2.351726 CCATAGCCCGAACTCGAAAAAG 59.648 50.000 0.00 0.00 43.02 2.27
153 162 0.177141 CCCATAGCCCGAACTCGAAA 59.823 55.000 0.00 0.00 43.02 3.46
189 198 1.271840 TACCCTAAGCCTGCACCCAG 61.272 60.000 0.00 0.00 38.85 4.45
218 227 0.754472 TACCTAAAGCCCGAATCCCG 59.246 55.000 0.00 0.00 38.18 5.14
261 270 2.094659 CGGCCTTGTACTGCTCGTG 61.095 63.158 0.00 0.00 0.00 4.35
290 299 3.074412 ACTGGAGCAAAGGTTGATAACG 58.926 45.455 0.00 0.00 0.00 3.18
293 302 5.488341 GAGTTACTGGAGCAAAGGTTGATA 58.512 41.667 0.00 0.00 0.00 2.15
312 321 3.428999 CCATAGTCGTCATTGTCGGAGTT 60.429 47.826 3.59 0.00 0.00 3.01
322 331 0.821517 TCCGTTGCCATAGTCGTCAT 59.178 50.000 0.00 0.00 0.00 3.06
323 332 0.172578 CTCCGTTGCCATAGTCGTCA 59.827 55.000 0.00 0.00 0.00 4.35
330 339 4.849310 GCCCGCTCCGTTGCCATA 62.849 66.667 0.00 0.00 0.00 2.74
360 369 2.354773 GATAAGGACCTCGCCGCG 60.355 66.667 6.39 6.39 0.00 6.46
364 373 1.067582 CCACGGATAAGGACCTCGC 59.932 63.158 0.00 0.00 0.00 5.03
378 387 0.663568 GTGTCTTCTCCGTCACCACG 60.664 60.000 0.00 0.00 46.29 4.94
383 392 1.285950 CAGCGTGTCTTCTCCGTCA 59.714 57.895 0.00 0.00 0.00 4.35
384 393 2.089349 GCAGCGTGTCTTCTCCGTC 61.089 63.158 0.00 0.00 0.00 4.79
385 394 2.049063 GCAGCGTGTCTTCTCCGT 60.049 61.111 0.00 0.00 0.00 4.69
409 418 1.210478 CCAATGTCTCCCAGTCCGATT 59.790 52.381 0.00 0.00 0.00 3.34
422 431 1.519455 CGCCCTCGTCTCCAATGTC 60.519 63.158 0.00 0.00 0.00 3.06
428 437 4.593864 GCCATCGCCCTCGTCTCC 62.594 72.222 0.00 0.00 36.96 3.71
429 438 4.933064 CGCCATCGCCCTCGTCTC 62.933 72.222 0.00 0.00 36.96 3.36
431 440 4.933064 CTCGCCATCGCCCTCGTC 62.933 72.222 0.00 0.00 36.96 4.20
433 442 3.544167 CTACTCGCCATCGCCCTCG 62.544 68.421 0.00 0.00 35.26 4.63
434 443 2.017559 AACTACTCGCCATCGCCCTC 62.018 60.000 0.00 0.00 35.26 4.30
435 444 1.614241 AAACTACTCGCCATCGCCCT 61.614 55.000 0.00 0.00 35.26 5.19
510 1985 9.569167 TCAAACTACTACATCAAATTAGACTCG 57.431 33.333 0.00 0.00 0.00 4.18
581 2123 4.398358 TGTCTCGAACCGATCTTCAATACT 59.602 41.667 0.00 0.00 34.61 2.12
656 2198 5.303165 ACGACCGAGTATCCTTTTCTTTTT 58.697 37.500 0.00 0.00 0.00 1.94
657 2199 4.891260 ACGACCGAGTATCCTTTTCTTTT 58.109 39.130 0.00 0.00 0.00 2.27
658 2200 4.532314 ACGACCGAGTATCCTTTTCTTT 57.468 40.909 0.00 0.00 0.00 2.52
659 2201 4.142293 GGTACGACCGAGTATCCTTTTCTT 60.142 45.833 0.00 0.00 0.00 2.52
660 2202 3.379688 GGTACGACCGAGTATCCTTTTCT 59.620 47.826 0.00 0.00 0.00 2.52
661 2203 3.489908 GGGTACGACCGAGTATCCTTTTC 60.490 52.174 7.44 0.00 42.97 2.29
662 2204 2.428530 GGGTACGACCGAGTATCCTTTT 59.571 50.000 7.44 0.00 42.97 2.27
663 2205 2.027385 GGGTACGACCGAGTATCCTTT 58.973 52.381 7.44 0.00 42.97 3.11
664 2206 1.685148 GGGTACGACCGAGTATCCTT 58.315 55.000 7.44 0.00 42.97 3.36
682 2224 6.044871 ACTGATCTCCAATAATTTAGAGGGGG 59.955 42.308 0.00 0.00 0.00 5.40
695 2237 5.601729 TGAGCATCTCTAACTGATCTCCAAT 59.398 40.000 0.00 0.00 34.92 3.16
719 2261 7.016153 TGTCTGTATAATTGGACTGGACTTT 57.984 36.000 13.46 0.00 0.00 2.66
720 2262 6.213600 ACTGTCTGTATAATTGGACTGGACTT 59.786 38.462 0.00 0.00 33.85 3.01
744 2286 4.750098 TCATCCTCTGTCTTCGTTTTTCAC 59.250 41.667 0.00 0.00 0.00 3.18
747 2289 4.065789 GGTCATCCTCTGTCTTCGTTTTT 58.934 43.478 0.00 0.00 0.00 1.94
754 2296 1.187087 GGACGGTCATCCTCTGTCTT 58.813 55.000 10.76 0.00 40.04 3.01
785 2331 1.153958 GCAGCTTGATTTGACCGGC 60.154 57.895 0.00 0.00 0.00 6.13
795 2341 4.460034 TCAATAGAAATTGCAGCAGCTTGA 59.540 37.500 1.76 0.00 41.96 3.02
814 2360 9.823647 CTACCATGACTACATTTAACTCTCAAT 57.176 33.333 0.00 0.00 34.15 2.57
829 2375 9.656323 ACTCTAACCATAAATCTACCATGACTA 57.344 33.333 0.00 0.00 0.00 2.59
884 2439 2.711009 ACCTTGACCAGATGACCTTCAA 59.289 45.455 0.00 0.00 0.00 2.69
885 2440 2.338809 ACCTTGACCAGATGACCTTCA 58.661 47.619 0.00 0.00 0.00 3.02
888 2443 2.338809 TGAACCTTGACCAGATGACCT 58.661 47.619 0.00 0.00 0.00 3.85
889 2444 2.859165 TGAACCTTGACCAGATGACC 57.141 50.000 0.00 0.00 0.00 4.02
890 2445 2.485814 GCTTGAACCTTGACCAGATGAC 59.514 50.000 0.00 0.00 0.00 3.06
891 2446 2.553028 GGCTTGAACCTTGACCAGATGA 60.553 50.000 0.00 0.00 0.00 2.92
892 2447 1.815003 GGCTTGAACCTTGACCAGATG 59.185 52.381 0.00 0.00 0.00 2.90
945 2501 2.388232 GGTGGCTACGCTGAAACCG 61.388 63.158 0.00 0.00 0.00 4.44
1073 2667 1.189752 GCAGGAGATGTGGAGTCTGA 58.810 55.000 0.00 0.00 0.00 3.27
1087 2681 2.441164 GAGGAGGAGAGCGCAGGA 60.441 66.667 11.47 0.00 0.00 3.86
1176 2778 9.710900 CAGACCACATATAAGAATACTATTGCA 57.289 33.333 0.00 0.00 0.00 4.08
1187 2789 8.704668 ACATGAATACACAGACCACATATAAGA 58.295 33.333 0.00 0.00 0.00 2.10
1188 2790 8.893219 ACATGAATACACAGACCACATATAAG 57.107 34.615 0.00 0.00 0.00 1.73
1191 2793 9.494271 GAATACATGAATACACAGACCACATAT 57.506 33.333 0.00 0.00 0.00 1.78
1237 2843 0.413037 TCCATGCCCCCTTGATTTGT 59.587 50.000 0.00 0.00 0.00 2.83
1238 2844 1.483415 CTTCCATGCCCCCTTGATTTG 59.517 52.381 0.00 0.00 0.00 2.32
1261 2867 0.254178 CAGTACTGAGGGCAAGCCAT 59.746 55.000 18.45 5.49 37.98 4.40
1381 2987 1.102978 GTTTGGTTGATCCCATCGGG 58.897 55.000 0.00 0.00 46.11 5.14
1386 2992 2.158475 AGAGCAAGTTTGGTTGATCCCA 60.158 45.455 0.00 0.00 42.63 4.37
1445 3059 0.796312 GTCTTGCACCACACCATACG 59.204 55.000 0.00 0.00 0.00 3.06
1457 3071 3.070476 TGACAAGCATATGGTCTTGCA 57.930 42.857 17.88 14.64 42.41 4.08
1460 3074 3.019564 GCCTTGACAAGCATATGGTCTT 58.980 45.455 8.07 0.00 32.84 3.01
1465 3079 5.762825 ATTACTGCCTTGACAAGCATATG 57.237 39.130 9.85 0.00 38.56 1.78
1468 3082 5.653769 ACATTATTACTGCCTTGACAAGCAT 59.346 36.000 9.85 5.22 38.56 3.79
1470 3084 5.123820 TCACATTATTACTGCCTTGACAAGC 59.876 40.000 9.85 6.22 0.00 4.01
1495 3116 2.846193 TCCGCAAAACTTAGAGCTTGT 58.154 42.857 0.00 0.00 0.00 3.16
1496 3117 5.545658 TTATCCGCAAAACTTAGAGCTTG 57.454 39.130 0.00 0.00 0.00 4.01
1502 3123 5.640732 ACATGCTTTATCCGCAAAACTTAG 58.359 37.500 0.00 0.00 41.26 2.18
1529 3150 8.015658 GCGGAAGGAAACATCATATAATGTTAC 58.984 37.037 4.61 2.10 46.49 2.50
1532 3153 6.061441 TGCGGAAGGAAACATCATATAATGT 58.939 36.000 0.00 0.00 41.60 2.71
1533 3154 6.427853 TCTGCGGAAGGAAACATCATATAATG 59.572 38.462 0.00 0.00 0.00 1.90
1536 3157 5.545063 TCTGCGGAAGGAAACATCATATA 57.455 39.130 0.00 0.00 0.00 0.86
1541 3162 5.560966 TTAAATCTGCGGAAGGAAACATC 57.439 39.130 0.00 0.00 0.00 3.06
1542 3163 5.710099 TCTTTAAATCTGCGGAAGGAAACAT 59.290 36.000 0.00 0.00 0.00 2.71
1543 3164 5.067273 TCTTTAAATCTGCGGAAGGAAACA 58.933 37.500 0.00 0.00 0.00 2.83
1544 3165 5.622770 TCTTTAAATCTGCGGAAGGAAAC 57.377 39.130 0.00 0.00 0.00 2.78
1545 3166 4.156008 GCTCTTTAAATCTGCGGAAGGAAA 59.844 41.667 0.00 0.00 0.00 3.13
1548 3169 2.356069 GGCTCTTTAAATCTGCGGAAGG 59.644 50.000 0.00 0.00 0.00 3.46
1549 3170 2.356069 GGGCTCTTTAAATCTGCGGAAG 59.644 50.000 0.00 0.00 0.00 3.46
1550 3171 2.365582 GGGCTCTTTAAATCTGCGGAA 58.634 47.619 0.00 0.00 0.00 4.30
1551 3172 1.408266 GGGGCTCTTTAAATCTGCGGA 60.408 52.381 0.00 0.00 0.00 5.54
1552 3173 1.025041 GGGGCTCTTTAAATCTGCGG 58.975 55.000 0.00 0.00 0.00 5.69
1558 3210 5.887214 ACAACTTTTGGGGCTCTTTAAAT 57.113 34.783 0.00 0.00 34.12 1.40
1561 3213 5.423886 CAAAACAACTTTTGGGGCTCTTTA 58.576 37.500 0.00 0.00 41.79 1.85
1571 3223 6.869695 ACCTTAGGTACCAAAACAACTTTTG 58.130 36.000 15.94 0.00 39.29 2.44
1612 3264 1.883926 ACCGTTGGTACCATCTTTTGC 59.116 47.619 17.17 0.00 32.11 3.68
1616 3268 3.055602 GTCCTTACCGTTGGTACCATCTT 60.056 47.826 17.17 7.26 37.97 2.40
1620 3272 1.714541 TGTCCTTACCGTTGGTACCA 58.285 50.000 11.60 11.60 37.97 3.25
1655 3335 9.166173 CTCTTCTGTCCATTAATAATTGACACA 57.834 33.333 13.74 4.06 38.27 3.72
1667 3347 2.568956 ACAGCAGCTCTTCTGTCCATTA 59.431 45.455 6.91 0.00 44.66 1.90
1671 3351 0.673022 CCACAGCAGCTCTTCTGTCC 60.673 60.000 9.20 0.00 44.66 4.02
1676 3356 1.001406 ACTACACCACAGCAGCTCTTC 59.999 52.381 0.00 0.00 0.00 2.87
1679 3359 0.671781 CCACTACACCACAGCAGCTC 60.672 60.000 0.00 0.00 0.00 4.09
1771 3460 2.661176 TAAATCCAGAGGACCAGGGT 57.339 50.000 0.00 0.00 32.98 4.34
1795 3484 7.884354 TCCTGCTATATTATCATTGACATGCAA 59.116 33.333 0.00 5.27 41.53 4.08
1843 3532 9.367444 CTGTAAAGTTAGTTCGTTAATGGAGAT 57.633 33.333 0.00 0.00 0.00 2.75
1894 3583 5.251601 TGGTTTTTGCTGTAGGTTGTAAC 57.748 39.130 0.00 0.00 0.00 2.50
1957 3678 3.006752 TGAGGAACATGATGGTTTTTGCC 59.993 43.478 0.00 0.00 0.00 4.52
1982 3703 2.315925 TCGGATCTTTGTCATGCTCC 57.684 50.000 0.00 0.00 0.00 4.70
2050 3771 2.039951 CCTACTGGGACCGGGGAA 59.960 66.667 6.32 0.00 37.23 3.97
2058 3779 3.244770 GGAACACATTGAACCTACTGGGA 60.245 47.826 0.00 0.00 38.76 4.37
2063 3784 3.000727 CGGAGGAACACATTGAACCTAC 58.999 50.000 0.00 0.00 30.27 3.18
2067 3788 2.737252 GAGACGGAGGAACACATTGAAC 59.263 50.000 0.00 0.00 0.00 3.18
2072 3793 1.550976 GGAAGAGACGGAGGAACACAT 59.449 52.381 0.00 0.00 0.00 3.21
2077 3798 2.697761 CGCGGAAGAGACGGAGGAA 61.698 63.158 0.00 0.00 0.00 3.36
2083 3813 1.635663 AAAATGGCGCGGAAGAGACG 61.636 55.000 8.83 0.00 44.50 4.18
2092 3822 4.474846 CCCGGTCAAAATGGCGCG 62.475 66.667 0.00 0.00 0.00 6.86
2100 3830 0.618458 CCTGAGATTCCCCGGTCAAA 59.382 55.000 0.00 0.00 0.00 2.69
2108 3838 1.773653 AGGAGAATGCCTGAGATTCCC 59.226 52.381 0.00 0.00 36.76 3.97
2144 3874 2.427453 AGTACTGATCAAGCAGGTACCG 59.573 50.000 15.04 2.66 40.20 4.02
2219 3949 7.940137 TCTTATTGTAGTGCCAAGTAAAAAGGA 59.060 33.333 0.00 0.00 0.00 3.36
2220 3950 8.106247 TCTTATTGTAGTGCCAAGTAAAAAGG 57.894 34.615 0.00 0.00 0.00 3.11
2221 3951 9.559958 CATCTTATTGTAGTGCCAAGTAAAAAG 57.440 33.333 0.00 0.00 0.00 2.27
2227 3957 3.947834 GCCATCTTATTGTAGTGCCAAGT 59.052 43.478 0.00 0.00 0.00 3.16
2235 3965 6.732154 CAGAACAATGGCCATCTTATTGTAG 58.268 40.000 21.08 9.74 42.40 2.74
2242 3972 1.927487 TGCAGAACAATGGCCATCTT 58.073 45.000 21.08 13.56 0.00 2.40
2270 4000 2.894731 TCATCTGCCCCTCCTATGTAG 58.105 52.381 0.00 0.00 0.00 2.74
2294 4024 9.573133 CAGTCTGTTAACAAAGAGAAAAATGTT 57.427 29.630 10.03 0.00 39.23 2.71
2296 4026 9.956720 ATCAGTCTGTTAACAAAGAGAAAAATG 57.043 29.630 10.03 2.06 0.00 2.32
2316 4047 6.204688 TGACATGGTTCACAGTAAAATCAGTC 59.795 38.462 0.00 0.00 0.00 3.51
2340 4071 2.073816 GTAATTCCCAGTGTCCGTGTG 58.926 52.381 0.00 0.00 0.00 3.82
2343 4074 3.495434 TTTGTAATTCCCAGTGTCCGT 57.505 42.857 0.00 0.00 0.00 4.69
2345 4076 4.021544 TGCAATTTGTAATTCCCAGTGTCC 60.022 41.667 0.00 0.00 0.00 4.02
2348 4079 5.389859 TCTGCAATTTGTAATTCCCAGTG 57.610 39.130 0.00 0.00 0.00 3.66
2350 4081 7.099266 TGTATCTGCAATTTGTAATTCCCAG 57.901 36.000 0.00 0.00 0.00 4.45
2392 4125 5.001232 GCCTAGGTGTTGTTCATCAAGTAA 58.999 41.667 11.31 0.00 36.66 2.24
2397 4130 3.719268 ATGCCTAGGTGTTGTTCATCA 57.281 42.857 11.31 0.00 0.00 3.07
2398 4131 4.009675 TGAATGCCTAGGTGTTGTTCATC 58.990 43.478 11.31 0.00 0.00 2.92
2399 4132 3.758554 GTGAATGCCTAGGTGTTGTTCAT 59.241 43.478 11.31 0.01 0.00 2.57
2403 4295 2.290323 GGAGTGAATGCCTAGGTGTTGT 60.290 50.000 11.31 0.00 0.00 3.32
2404 4296 2.290260 TGGAGTGAATGCCTAGGTGTTG 60.290 50.000 11.31 0.00 0.00 3.33
2407 4299 1.556911 AGTGGAGTGAATGCCTAGGTG 59.443 52.381 11.31 0.00 0.00 4.00
2409 4301 3.452627 AGTTAGTGGAGTGAATGCCTAGG 59.547 47.826 3.67 3.67 0.00 3.02
2414 4306 4.116238 GCTAGAGTTAGTGGAGTGAATGC 58.884 47.826 0.00 0.00 0.00 3.56
2428 4320 2.693069 GTGCACTCACATGCTAGAGTT 58.307 47.619 10.32 0.00 46.28 3.01
2438 4330 1.314730 TACTCTGTCGTGCACTCACA 58.685 50.000 16.19 15.75 43.28 3.58
2439 4331 2.417339 TTACTCTGTCGTGCACTCAC 57.583 50.000 16.19 11.81 39.78 3.51
2448 4340 6.387465 TCAGTCCAGTTTTATTACTCTGTCG 58.613 40.000 0.00 0.00 0.00 4.35
2480 4372 6.254281 TCTAAAGAGGCATTTTCTTTTCCG 57.746 37.500 5.00 0.00 40.92 4.30
2535 4427 2.084610 TCTGTGTGTCATGCTAGTGC 57.915 50.000 0.00 0.00 40.20 4.40
2542 4434 8.171196 GTCAAGTGTTATTATCTGTGTGTCATG 58.829 37.037 0.00 0.00 0.00 3.07
2543 4435 7.334421 GGTCAAGTGTTATTATCTGTGTGTCAT 59.666 37.037 0.00 0.00 0.00 3.06
2544 4436 6.649141 GGTCAAGTGTTATTATCTGTGTGTCA 59.351 38.462 0.00 0.00 0.00 3.58
2545 4437 6.183360 CGGTCAAGTGTTATTATCTGTGTGTC 60.183 42.308 0.00 0.00 0.00 3.67
2549 4441 6.455646 GCTTCGGTCAAGTGTTATTATCTGTG 60.456 42.308 0.00 0.00 34.13 3.66
2551 4443 5.580691 TGCTTCGGTCAAGTGTTATTATCTG 59.419 40.000 0.00 0.00 34.13 2.90
2552 4444 5.581085 GTGCTTCGGTCAAGTGTTATTATCT 59.419 40.000 0.00 0.00 34.13 1.98
2553 4445 5.581085 AGTGCTTCGGTCAAGTGTTATTATC 59.419 40.000 0.00 0.00 34.13 1.75
2565 4457 1.664649 CTTCGCAGTGCTTCGGTCA 60.665 57.895 14.33 0.00 0.00 4.02
2569 4461 2.236690 CAATTTCTTCGCAGTGCTTCG 58.763 47.619 14.33 0.00 0.00 3.79
2571 4463 2.030805 GGACAATTTCTTCGCAGTGCTT 60.031 45.455 14.33 0.00 0.00 3.91
2575 4467 4.918810 AAAAGGACAATTTCTTCGCAGT 57.081 36.364 0.00 0.00 0.00 4.40
2596 4488 1.540707 GGTTATGCCCGGTTCGAAAAA 59.459 47.619 0.00 0.00 0.00 1.94
2597 4489 1.166989 GGTTATGCCCGGTTCGAAAA 58.833 50.000 0.00 0.00 0.00 2.29
2598 4490 2.857254 GGTTATGCCCGGTTCGAAA 58.143 52.632 0.00 0.00 0.00 3.46
2599 4491 4.621832 GGTTATGCCCGGTTCGAA 57.378 55.556 0.00 0.00 0.00 3.71
2608 4500 3.636764 CAGTAATGGAAAGGGGTTATGCC 59.363 47.826 0.00 0.00 0.00 4.40
2609 4501 3.068165 GCAGTAATGGAAAGGGGTTATGC 59.932 47.826 0.00 0.00 0.00 3.14
2610 4502 3.315191 CGCAGTAATGGAAAGGGGTTATG 59.685 47.826 0.00 0.00 0.00 1.90
2611 4503 3.201266 TCGCAGTAATGGAAAGGGGTTAT 59.799 43.478 0.00 0.00 0.00 1.89
2612 4504 2.572556 TCGCAGTAATGGAAAGGGGTTA 59.427 45.455 0.00 0.00 0.00 2.85
2613 4505 1.353022 TCGCAGTAATGGAAAGGGGTT 59.647 47.619 0.00 0.00 0.00 4.11
2614 4506 0.988832 TCGCAGTAATGGAAAGGGGT 59.011 50.000 0.00 0.00 0.00 4.95
2615 4507 1.339631 TGTCGCAGTAATGGAAAGGGG 60.340 52.381 0.00 0.00 0.00 4.79
2616 4508 2.107950 TGTCGCAGTAATGGAAAGGG 57.892 50.000 0.00 0.00 0.00 3.95
2617 4509 5.156804 GTTATGTCGCAGTAATGGAAAGG 57.843 43.478 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.