Multiple sequence alignment - TraesCS1B01G465600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G465600 chr1B 100.000 4325 0 0 1 4325 676261704 676257380 0.000000e+00 7987.0
1 TraesCS1B01G465600 chr1D 95.112 1289 53 3 2121 3406 485743766 485742485 0.000000e+00 2023.0
2 TraesCS1B01G465600 chr1D 95.284 721 30 2 935 1651 485744798 485744078 0.000000e+00 1140.0
3 TraesCS1B01G465600 chr1D 88.757 507 30 12 1 496 485745625 485745135 2.880000e-166 595.0
4 TraesCS1B01G465600 chr1D 91.700 253 14 6 664 910 485745118 485744867 1.150000e-90 344.0
5 TraesCS1B01G465600 chr1D 84.091 176 16 5 1484 1653 485744068 485743899 4.480000e-35 159.0
6 TraesCS1B01G465600 chr1D 97.561 41 0 1 489 529 485745126 485745087 7.760000e-08 69.4
7 TraesCS1B01G465600 chr1D 87.037 54 4 2 198 248 458771759 458771706 1.680000e-04 58.4
8 TraesCS1B01G465600 chr1D 96.774 31 1 0 1653 1683 485743794 485743764 8.000000e-03 52.8
9 TraesCS1B01G465600 chr1A 93.978 1262 55 4 2473 3734 583333695 583332455 0.000000e+00 1890.0
10 TraesCS1B01G465600 chr1A 96.012 652 24 2 1832 2482 583335623 583334973 0.000000e+00 1059.0
11 TraesCS1B01G465600 chr1A 91.817 721 43 10 658 1364 583361759 583361041 0.000000e+00 990.0
12 TraesCS1B01G465600 chr1A 90.289 381 19 8 3763 4140 583332456 583332091 2.340000e-132 483.0
13 TraesCS1B01G465600 chr1A 92.787 305 13 4 1356 1653 583336331 583336029 2.390000e-117 433.0
14 TraesCS1B01G465600 chr1A 81.176 340 25 25 327 661 583362022 583361717 2.010000e-58 237.0
15 TraesCS1B01G465600 chr1A 91.667 144 12 0 1653 1796 583335747 583335604 2.640000e-47 200.0
16 TraesCS1B01G465600 chr1A 77.974 227 34 10 3831 4050 373497536 373497319 1.260000e-25 128.0
17 TraesCS1B01G465600 chr7D 89.470 1491 136 12 2272 3753 28031271 28029793 0.000000e+00 1864.0
18 TraesCS1B01G465600 chr7D 87.631 857 71 16 2635 3479 28040915 28040082 0.000000e+00 963.0
19 TraesCS1B01G465600 chr7D 86.257 895 69 19 1666 2558 28041762 28040920 0.000000e+00 922.0
20 TraesCS1B01G465600 chr7D 85.220 636 82 7 937 1571 28043630 28043006 1.010000e-180 643.0
21 TraesCS1B01G465600 chr7D 83.900 559 77 6 1015 1571 28033259 28032712 4.960000e-144 521.0
22 TraesCS1B01G465600 chr7D 87.637 364 26 9 3773 4133 28029728 28029381 5.210000e-109 405.0
23 TraesCS1B01G465600 chr7D 93.281 253 14 1 2937 3186 28013365 28013113 1.900000e-98 370.0
24 TraesCS1B01G465600 chr7A 90.562 996 87 4 2777 3771 28444775 28443786 0.000000e+00 1312.0
25 TraesCS1B01G465600 chr7A 87.003 931 75 14 1668 2589 28460620 28459727 0.000000e+00 1007.0
26 TraesCS1B01G465600 chr7A 87.062 827 69 18 2665 3479 28459708 28458908 0.000000e+00 900.0
27 TraesCS1B01G465600 chr7A 86.316 760 92 3 2436 3186 28423658 28422902 0.000000e+00 817.0
28 TraesCS1B01G465600 chr7A 85.220 636 82 7 937 1571 28462510 28461886 1.010000e-180 643.0
29 TraesCS1B01G465600 chr7A 84.897 629 78 7 949 1571 28447074 28446457 1.710000e-173 619.0
30 TraesCS1B01G465600 chr7A 90.196 459 40 3 2272 2726 28445235 28444778 1.040000e-165 593.0
31 TraesCS1B01G465600 chr7A 87.742 465 47 5 1667 2124 28424233 28423772 6.370000e-148 534.0
32 TraesCS1B01G465600 chr7A 85.638 376 23 14 3773 4139 28443685 28443332 2.460000e-97 366.0
33 TraesCS1B01G465600 chr7A 95.960 99 4 0 2243 2341 28423756 28423658 1.240000e-35 161.0
34 TraesCS1B01G465600 chr7A 91.781 73 6 0 4253 4325 35587098 35587026 7.650000e-18 102.0
35 TraesCS1B01G465600 chr4A 87.304 827 70 16 2665 3479 701762917 701762114 0.000000e+00 913.0
36 TraesCS1B01G465600 chr4A 89.672 610 52 8 3148 3753 701752778 701752176 0.000000e+00 767.0
37 TraesCS1B01G465600 chr4A 92.471 518 36 1 2112 2629 701763425 701762911 0.000000e+00 737.0
38 TraesCS1B01G465600 chr4A 84.878 615 81 8 958 1571 701765819 701765216 1.030000e-170 610.0
39 TraesCS1B01G465600 chr4A 86.280 379 26 11 3773 4139 701752108 701751744 5.240000e-104 388.0
40 TraesCS1B01G465600 chr4A 82.178 101 13 5 182 279 688482530 688482628 9.970000e-12 82.4
41 TraesCS1B01G465600 chrUn 94.444 72 4 0 4254 4325 10306924 10306995 1.270000e-20 111.0
42 TraesCS1B01G465600 chrUn 93.151 73 5 0 4253 4325 374822137 374822209 1.640000e-19 108.0
43 TraesCS1B01G465600 chr2D 93.243 74 5 0 4252 4325 37310091 37310164 4.570000e-20 110.0
44 TraesCS1B01G465600 chr3B 93.151 73 5 0 4253 4325 52615139 52615211 1.640000e-19 108.0
45 TraesCS1B01G465600 chr3B 86.517 89 8 3 192 278 533855253 533855167 1.280000e-15 95.3
46 TraesCS1B01G465600 chr5D 91.667 72 6 0 4252 4323 17810908 17810837 2.750000e-17 100.0
47 TraesCS1B01G465600 chr5B 91.667 72 6 0 4252 4323 595634611 595634682 2.750000e-17 100.0
48 TraesCS1B01G465600 chr2A 91.667 72 6 0 4253 4324 155646872 155646801 2.750000e-17 100.0
49 TraesCS1B01G465600 chr2A 87.500 80 6 3 189 266 717202770 717202693 5.960000e-14 89.8
50 TraesCS1B01G465600 chr7B 90.541 74 7 0 4251 4324 1876570 1876497 9.900000e-17 99.0
51 TraesCS1B01G465600 chr6B 87.013 77 8 2 190 265 502303175 502303100 7.710000e-13 86.1
52 TraesCS1B01G465600 chr6D 88.406 69 6 2 200 268 414774530 414774596 9.970000e-12 82.4
53 TraesCS1B01G465600 chr5A 89.796 49 3 2 202 248 615706596 615706644 1.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G465600 chr1B 676257380 676261704 4324 True 7987.000000 7987 100.000000 1 4325 1 chr1B.!!$R1 4324
1 TraesCS1B01G465600 chr1D 485742485 485745625 3140 True 626.171429 2023 92.754143 1 3406 7 chr1D.!!$R2 3405
2 TraesCS1B01G465600 chr1A 583332091 583336331 4240 True 813.000000 1890 92.946600 1356 4140 5 chr1A.!!$R2 2784
3 TraesCS1B01G465600 chr1A 583361041 583362022 981 True 613.500000 990 86.496500 327 1364 2 chr1A.!!$R3 1037
4 TraesCS1B01G465600 chr7D 28029381 28033259 3878 True 930.000000 1864 87.002333 1015 4133 3 chr7D.!!$R2 3118
5 TraesCS1B01G465600 chr7D 28040082 28043630 3548 True 842.666667 963 86.369333 937 3479 3 chr7D.!!$R3 2542
6 TraesCS1B01G465600 chr7A 28458908 28462510 3602 True 850.000000 1007 86.428333 937 3479 3 chr7A.!!$R4 2542
7 TraesCS1B01G465600 chr7A 28443332 28447074 3742 True 722.500000 1312 87.823250 949 4139 4 chr7A.!!$R3 3190
8 TraesCS1B01G465600 chr7A 28422902 28424233 1331 True 504.000000 817 90.006000 1667 3186 3 chr7A.!!$R2 1519
9 TraesCS1B01G465600 chr4A 701762114 701765819 3705 True 753.333333 913 88.217667 958 3479 3 chr4A.!!$R2 2521
10 TraesCS1B01G465600 chr4A 701751744 701752778 1034 True 577.500000 767 87.976000 3148 4139 2 chr4A.!!$R1 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 597 0.322008 CCTCTCCAGGTCCTGTTTGC 60.322 60.000 17.85 0.00 34.60 3.68 F
567 598 0.671781 CTCTCCAGGTCCTGTTTGCG 60.672 60.000 17.85 1.99 0.00 4.85 F
569 600 0.671781 CTCCAGGTCCTGTTTGCGAG 60.672 60.000 17.85 12.08 0.00 5.03 F
721 760 0.953960 CCTAACTGGCGCCGTTCTTT 60.954 55.000 30.39 17.90 0.00 2.52 F
929 974 1.337917 TGACATTACCGTGGCGCTAAA 60.338 47.619 7.64 0.00 0.00 1.85 F
1222 1325 1.959226 GAAAGACGCAGGCCGACAA 60.959 57.895 0.00 0.00 41.02 3.18 F
2987 6839 0.730494 GCGCAGAATTGTGGTTCAGC 60.730 55.000 0.30 0.00 37.29 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 4188 2.014128 GCGGTAATTTGCTCTAAGCCA 58.986 47.619 0.00 0.0 41.51 4.75 R
2310 4809 2.409948 AGCCTGGCTGTAAGATTGAC 57.590 50.000 22.71 0.0 37.57 3.18 R
2451 4950 2.764572 CACGATACCCTTTCCACTACCT 59.235 50.000 0.00 0.0 0.00 3.08 R
2680 6517 1.613925 GAAAACTGCCCCTTTCTCCAC 59.386 52.381 0.00 0.0 0.00 4.02 R
2850 6690 2.293170 GACCCAGCTAGAAATTCTGCC 58.707 52.381 5.64 0.0 0.00 4.85 R
3210 7065 0.318360 GCCCAACGTTTACAACAGGC 60.318 55.000 0.00 0.0 0.00 4.85 R
4098 8090 0.038618 AGTTCTGCACGATACACGCA 60.039 50.000 0.00 0.0 46.94 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 8.217111 TCTTTATTGGTGATATCAATGCCACTA 58.783 33.333 7.07 6.87 36.40 2.74
78 79 7.984422 TTATTGGTGATATCAATGCCACTAG 57.016 36.000 7.07 0.00 36.40 2.57
85 86 7.308229 GGTGATATCAATGCCACTAGTTCATTC 60.308 40.741 7.07 6.78 0.00 2.67
86 87 6.712095 TGATATCAATGCCACTAGTTCATTCC 59.288 38.462 14.15 5.83 0.00 3.01
87 88 4.574674 TCAATGCCACTAGTTCATTCCT 57.425 40.909 14.15 0.00 0.00 3.36
92 93 7.450014 TCAATGCCACTAGTTCATTCCTTTTTA 59.550 33.333 14.15 0.00 0.00 1.52
93 94 6.817765 TGCCACTAGTTCATTCCTTTTTAG 57.182 37.500 0.00 0.00 0.00 1.85
94 95 5.710099 TGCCACTAGTTCATTCCTTTTTAGG 59.290 40.000 0.00 0.00 0.00 2.69
200 201 2.897780 GCAATTTTTGAGTGCGGCA 58.102 47.368 0.00 0.00 39.78 5.69
205 206 2.879002 TTTTTGAGTGCGGCATTTCA 57.121 40.000 5.72 10.89 0.00 2.69
233 234 3.626996 CTCATCTGCACCCGGCCAA 62.627 63.158 2.24 0.00 43.89 4.52
295 296 6.558488 TTCCAAAATGAAATATTCAGGGGG 57.442 37.500 0.00 0.00 43.98 5.40
318 319 2.830923 AGAGATGTAGTCTGCTGCTTGT 59.169 45.455 0.00 0.00 37.29 3.16
405 417 2.419667 CGTGAAGTTTTCCCCACGTAT 58.580 47.619 0.00 0.00 44.88 3.06
420 432 4.341235 CCCACGTATAGAGTTTCTCATGGA 59.659 45.833 0.00 0.00 32.06 3.41
536 567 4.657824 CCACTGCCCGTCGACGTT 62.658 66.667 33.49 11.71 37.74 3.99
545 576 4.790861 GTCGACGTTCCGGCCTCC 62.791 72.222 0.00 0.00 0.00 4.30
552 583 4.798682 TTCCGGCCTCCCCCTCTC 62.799 72.222 0.00 0.00 0.00 3.20
557 588 4.423209 GCCTCCCCCTCTCCAGGT 62.423 72.222 0.00 0.00 38.30 4.00
558 589 2.041405 CCTCCCCCTCTCCAGGTC 60.041 72.222 0.00 0.00 38.30 3.85
559 590 2.041405 CTCCCCCTCTCCAGGTCC 60.041 72.222 0.00 0.00 38.30 4.46
560 591 2.540910 TCCCCCTCTCCAGGTCCT 60.541 66.667 0.00 0.00 38.30 3.85
561 592 2.366167 CCCCCTCTCCAGGTCCTG 60.366 72.222 12.40 12.40 38.30 3.86
562 593 2.452114 CCCCTCTCCAGGTCCTGT 59.548 66.667 17.85 0.00 38.30 4.00
563 594 1.229658 CCCCTCTCCAGGTCCTGTT 60.230 63.158 17.85 0.00 38.30 3.16
564 595 0.842467 CCCCTCTCCAGGTCCTGTTT 60.842 60.000 17.85 0.00 38.30 2.83
565 596 0.326264 CCCTCTCCAGGTCCTGTTTG 59.674 60.000 17.85 7.31 38.30 2.93
566 597 0.322008 CCTCTCCAGGTCCTGTTTGC 60.322 60.000 17.85 0.00 34.60 3.68
567 598 0.671781 CTCTCCAGGTCCTGTTTGCG 60.672 60.000 17.85 1.99 0.00 4.85
568 599 1.118965 TCTCCAGGTCCTGTTTGCGA 61.119 55.000 17.85 6.39 0.00 5.10
569 600 0.671781 CTCCAGGTCCTGTTTGCGAG 60.672 60.000 17.85 12.08 0.00 5.03
570 601 1.071471 CCAGGTCCTGTTTGCGAGT 59.929 57.895 17.85 0.00 0.00 4.18
571 602 1.230635 CCAGGTCCTGTTTGCGAGTG 61.231 60.000 17.85 0.00 0.00 3.51
572 603 1.598130 AGGTCCTGTTTGCGAGTGC 60.598 57.895 0.00 0.00 43.20 4.40
602 633 2.746671 CAGGCTGCTGGTCTGCTG 60.747 66.667 0.00 2.56 40.98 4.41
667 698 4.479993 CTCTTCCCTGCCGGCCTG 62.480 72.222 26.77 16.96 0.00 4.85
721 760 0.953960 CCTAACTGGCGCCGTTCTTT 60.954 55.000 30.39 17.90 0.00 2.52
815 855 5.525378 CCACCAAATAGCATCAGAGTAGAAC 59.475 44.000 0.00 0.00 0.00 3.01
887 932 5.529581 AATTTCTCGTGGGAAACAAATGT 57.470 34.783 0.00 0.00 37.91 2.71
915 960 6.409704 AGACACATGTGCTTAGTATGACATT 58.590 36.000 25.68 0.30 0.00 2.71
929 974 1.337917 TGACATTACCGTGGCGCTAAA 60.338 47.619 7.64 0.00 0.00 1.85
992 1084 7.325660 TGCATCTTCTGAGTGGATTTATTTC 57.674 36.000 0.00 0.00 0.00 2.17
1057 1159 3.505680 TGCAACACCCATTATCTTGTGTC 59.494 43.478 0.00 0.00 40.83 3.67
1222 1325 1.959226 GAAAGACGCAGGCCGACAA 60.959 57.895 0.00 0.00 41.02 3.18
1446 1549 6.790285 TTCGTTTGTCTAGTTATTTGACCC 57.210 37.500 0.00 0.00 31.55 4.46
1551 1661 6.036300 ACATTGTTTTCAGACAAATGCTTGTG 59.964 34.615 0.00 0.00 45.98 3.33
1647 1760 6.878923 TGGTTGTATTGACCTGTTTCTGATAG 59.121 38.462 0.00 0.00 38.04 2.08
1707 3662 3.747529 CCATTTTGCAGGACCAACATTTC 59.252 43.478 0.00 0.00 0.00 2.17
1730 3686 5.703592 TCGCATGTTACATTGGTTCTTTACT 59.296 36.000 0.00 0.00 0.00 2.24
1740 4071 6.490040 ACATTGGTTCTTTACTGTAATGCACT 59.510 34.615 13.04 0.00 31.71 4.40
1760 4091 5.105997 GCACTTTAGCTGATTGTTCTGGATT 60.106 40.000 0.00 0.00 0.00 3.01
1772 4105 8.637099 TGATTGTTCTGGATTTTTGTATTGTCA 58.363 29.630 0.00 0.00 0.00 3.58
1773 4106 9.474920 GATTGTTCTGGATTTTTGTATTGTCAA 57.525 29.630 0.00 0.00 0.00 3.18
1864 4211 2.618709 GGCTTAGAGCAAATTACCGCAT 59.381 45.455 2.04 0.00 44.75 4.73
1900 4252 6.772716 TCTTGCTTAACCTTTGAGATCTGTTT 59.227 34.615 0.00 0.00 0.00 2.83
1901 4253 7.936847 TCTTGCTTAACCTTTGAGATCTGTTTA 59.063 33.333 0.00 0.00 0.00 2.01
2018 4388 5.221641 TGGACTTATGTGTTTAGCTCACACT 60.222 40.000 23.03 14.29 46.26 3.55
2022 4392 7.442656 ACTTATGTGTTTAGCTCACACTAGTT 58.557 34.615 23.03 12.06 46.26 2.24
2310 4809 8.627403 AGATTATTCAAATATTGCAGGTGTGAG 58.373 33.333 0.00 0.00 0.00 3.51
2451 4950 2.901192 TGGAGACCAAAACCTGATACGA 59.099 45.455 0.00 0.00 0.00 3.43
2527 6319 5.235616 AGCACAATGTTGAAAGCAGAAAATG 59.764 36.000 0.00 0.00 0.00 2.32
2621 6413 5.329191 TCATCCAGGCTGAAAATATCCAT 57.671 39.130 17.94 0.00 0.00 3.41
2759 6599 2.636830 AGACATCCTGCAGAAAATCGG 58.363 47.619 17.39 0.00 0.00 4.18
2824 6664 5.050091 CCTGCGGCATCTAAAAATACTAGTG 60.050 44.000 5.39 0.00 0.00 2.74
2850 6690 4.992951 TGTGAACATGATGTCACTTCTCAG 59.007 41.667 20.51 0.00 33.06 3.35
2946 6798 3.130280 TCAGCAGAAGCATTGAAGACA 57.870 42.857 0.00 0.00 45.49 3.41
2987 6839 0.730494 GCGCAGAATTGTGGTTCAGC 60.730 55.000 0.30 0.00 37.29 4.26
3050 6902 2.703798 CCAAATCTGCGCCAGGTGG 61.704 63.158 4.18 1.97 38.53 4.61
3187 7042 1.207089 TCCCGTTCTTCATGCAGTAGG 59.793 52.381 0.00 0.00 0.00 3.18
3207 7062 4.793201 AGGATATCTTTTACAGTTGGCCC 58.207 43.478 0.00 0.00 0.00 5.80
3208 7063 3.889538 GGATATCTTTTACAGTTGGCCCC 59.110 47.826 0.00 0.00 0.00 5.80
3209 7064 4.386424 GGATATCTTTTACAGTTGGCCCCT 60.386 45.833 0.00 0.00 0.00 4.79
3210 7065 2.286365 TCTTTTACAGTTGGCCCCTG 57.714 50.000 15.93 15.93 36.01 4.45
3369 7237 3.571401 AGCAGTCAAGGGAATGAAAGTTG 59.429 43.478 0.00 0.00 41.49 3.16
3475 7343 1.743394 GGCTGAAGGGTTAACAATCCG 59.257 52.381 8.10 0.46 36.52 4.18
3600 7468 0.034059 GTCAGATACCATCGCAGGGG 59.966 60.000 0.00 0.00 0.00 4.79
3639 7507 2.094130 GCCCACCACTCTCTGTTAGTAC 60.094 54.545 0.00 0.00 0.00 2.73
3686 7554 0.322816 TGGCCCTTCTTTAGCTGCTG 60.323 55.000 13.43 0.00 0.00 4.41
3707 7581 7.827701 TGCTGTGGTACTAATCTATATAGCAC 58.172 38.462 4.75 5.59 43.20 4.40
3753 7675 3.449018 TCCTGCTTGAATCCTGTAGACTC 59.551 47.826 0.00 0.00 0.00 3.36
3754 7676 3.443037 CTGCTTGAATCCTGTAGACTCG 58.557 50.000 0.00 0.00 0.00 4.18
3755 7677 2.166459 TGCTTGAATCCTGTAGACTCGG 59.834 50.000 0.00 0.00 0.00 4.63
3756 7678 2.815478 CTTGAATCCTGTAGACTCGGC 58.185 52.381 0.00 0.00 0.00 5.54
3758 7680 1.476891 TGAATCCTGTAGACTCGGCAC 59.523 52.381 0.00 0.00 0.00 5.01
3759 7681 0.824759 AATCCTGTAGACTCGGCACC 59.175 55.000 0.00 0.00 0.00 5.01
3760 7682 0.324368 ATCCTGTAGACTCGGCACCA 60.324 55.000 0.00 0.00 0.00 4.17
3763 7685 0.389948 CTGTAGACTCGGCACCAACC 60.390 60.000 0.00 0.00 0.00 3.77
3826 7809 1.078709 CCATGGGCTATCGTTATGCG 58.921 55.000 2.85 0.00 43.01 4.73
3916 7899 8.687292 TGATGAGGATTCTTATTCTTTGATGG 57.313 34.615 0.00 0.00 0.00 3.51
3917 7900 8.496916 TGATGAGGATTCTTATTCTTTGATGGA 58.503 33.333 0.00 0.00 0.00 3.41
3918 7901 9.347240 GATGAGGATTCTTATTCTTTGATGGAA 57.653 33.333 0.00 0.00 0.00 3.53
3919 7902 9.878737 ATGAGGATTCTTATTCTTTGATGGAAT 57.121 29.630 0.00 0.00 37.24 3.01
3920 7903 9.128404 TGAGGATTCTTATTCTTTGATGGAATG 57.872 33.333 0.00 0.00 35.40 2.67
3921 7904 9.347240 GAGGATTCTTATTCTTTGATGGAATGA 57.653 33.333 0.00 0.00 35.40 2.57
3922 7905 9.878737 AGGATTCTTATTCTTTGATGGAATGAT 57.121 29.630 0.00 0.00 35.40 2.45
3923 7906 9.909644 GGATTCTTATTCTTTGATGGAATGATG 57.090 33.333 0.00 0.00 35.40 3.07
3968 7951 1.210478 TGATCTAGCTTTGAGGTGCCC 59.790 52.381 0.00 0.00 0.00 5.36
3969 7952 1.488393 GATCTAGCTTTGAGGTGCCCT 59.512 52.381 0.00 0.00 36.03 5.19
3970 7953 0.615331 TCTAGCTTTGAGGTGCCCTG 59.385 55.000 0.00 0.00 31.76 4.45
3971 7954 1.002134 TAGCTTTGAGGTGCCCTGC 60.002 57.895 0.00 0.00 31.76 4.85
3972 7955 1.492133 TAGCTTTGAGGTGCCCTGCT 61.492 55.000 0.00 4.20 34.34 4.24
3999 7985 3.373439 GTGTTGGCTTGATCTAGCTTCTG 59.627 47.826 24.93 0.00 40.99 3.02
4018 8004 6.677781 TTCTGCCAGATAAAAAGATAACCG 57.322 37.500 0.00 0.00 0.00 4.44
4043 8030 7.305590 CGCATAATTTTGATCCAAATCTTGACG 60.306 37.037 5.31 9.45 33.19 4.35
4096 8088 0.179189 GTGCTGCATTTAGTCGTGCC 60.179 55.000 5.27 0.00 40.56 5.01
4097 8089 1.060937 GCTGCATTTAGTCGTGCCG 59.939 57.895 0.00 0.00 40.56 5.69
4098 8090 1.635663 GCTGCATTTAGTCGTGCCGT 61.636 55.000 0.00 0.00 40.56 5.68
4099 8091 0.095245 CTGCATTTAGTCGTGCCGTG 59.905 55.000 0.00 0.00 40.56 4.94
4100 8092 1.226018 GCATTTAGTCGTGCCGTGC 60.226 57.895 0.00 0.00 35.35 5.34
4141 8133 7.366847 TCTAGGTTTAGAGAATTGATCCCAG 57.633 40.000 0.00 0.00 32.21 4.45
4142 8134 4.786425 AGGTTTAGAGAATTGATCCCAGC 58.214 43.478 0.00 0.00 0.00 4.85
4143 8135 3.885901 GGTTTAGAGAATTGATCCCAGCC 59.114 47.826 0.00 0.00 0.00 4.85
4144 8136 3.475566 TTAGAGAATTGATCCCAGCCG 57.524 47.619 0.00 0.00 0.00 5.52
4145 8137 1.500474 AGAGAATTGATCCCAGCCGA 58.500 50.000 0.00 0.00 0.00 5.54
4146 8138 2.053244 AGAGAATTGATCCCAGCCGAT 58.947 47.619 0.00 0.00 0.00 4.18
4147 8139 2.038295 AGAGAATTGATCCCAGCCGATC 59.962 50.000 0.00 0.24 39.35 3.69
4148 8140 1.770658 AGAATTGATCCCAGCCGATCA 59.229 47.619 4.97 4.97 45.39 2.92
4149 8141 2.374504 AGAATTGATCCCAGCCGATCAT 59.625 45.455 8.95 0.00 46.10 2.45
4150 8142 2.965671 ATTGATCCCAGCCGATCATT 57.034 45.000 8.95 4.33 46.10 2.57
4151 8143 4.042062 AGAATTGATCCCAGCCGATCATTA 59.958 41.667 8.95 0.00 46.10 1.90
4152 8144 3.855255 TTGATCCCAGCCGATCATTAA 57.145 42.857 8.95 0.00 46.10 1.40
4153 8145 3.407424 TGATCCCAGCCGATCATTAAG 57.593 47.619 4.97 0.00 42.89 1.85
4154 8146 2.705658 TGATCCCAGCCGATCATTAAGT 59.294 45.455 4.97 0.00 42.89 2.24
4155 8147 3.901222 TGATCCCAGCCGATCATTAAGTA 59.099 43.478 4.97 0.00 42.89 2.24
4156 8148 4.021104 TGATCCCAGCCGATCATTAAGTAG 60.021 45.833 4.97 0.00 42.89 2.57
4157 8149 3.572642 TCCCAGCCGATCATTAAGTAGA 58.427 45.455 0.00 0.00 0.00 2.59
4158 8150 3.574396 TCCCAGCCGATCATTAAGTAGAG 59.426 47.826 0.00 0.00 0.00 2.43
4159 8151 3.321497 CCAGCCGATCATTAAGTAGAGC 58.679 50.000 0.00 0.00 0.00 4.09
4160 8152 3.243873 CCAGCCGATCATTAAGTAGAGCA 60.244 47.826 0.00 0.00 0.00 4.26
4161 8153 3.986572 CAGCCGATCATTAAGTAGAGCAG 59.013 47.826 0.00 0.00 0.00 4.24
4162 8154 3.891977 AGCCGATCATTAAGTAGAGCAGA 59.108 43.478 0.00 0.00 0.00 4.26
4163 8155 3.984633 GCCGATCATTAAGTAGAGCAGAC 59.015 47.826 0.00 0.00 0.00 3.51
4164 8156 4.261825 GCCGATCATTAAGTAGAGCAGACT 60.262 45.833 0.00 0.00 0.00 3.24
4165 8157 5.737635 GCCGATCATTAAGTAGAGCAGACTT 60.738 44.000 0.00 3.77 40.27 3.01
4166 8158 6.276847 CCGATCATTAAGTAGAGCAGACTTT 58.723 40.000 3.62 0.00 38.16 2.66
4167 8159 7.426410 CCGATCATTAAGTAGAGCAGACTTTA 58.574 38.462 3.62 0.00 38.16 1.85
4168 8160 7.380065 CCGATCATTAAGTAGAGCAGACTTTAC 59.620 40.741 3.62 0.00 38.16 2.01
4169 8161 7.915923 CGATCATTAAGTAGAGCAGACTTTACA 59.084 37.037 3.62 0.00 36.24 2.41
4170 8162 9.587772 GATCATTAAGTAGAGCAGACTTTACAA 57.412 33.333 3.62 0.00 36.24 2.41
4171 8163 8.988064 TCATTAAGTAGAGCAGACTTTACAAG 57.012 34.615 3.62 0.00 36.24 3.16
4172 8164 8.585881 TCATTAAGTAGAGCAGACTTTACAAGT 58.414 33.333 3.62 0.00 46.38 3.16
4173 8165 8.651588 CATTAAGTAGAGCAGACTTTACAAGTG 58.348 37.037 3.62 0.00 43.03 3.16
4174 8166 4.561105 AGTAGAGCAGACTTTACAAGTGC 58.439 43.478 0.00 0.00 43.03 4.40
4175 8167 3.475566 AGAGCAGACTTTACAAGTGCA 57.524 42.857 0.00 0.00 43.03 4.57
4176 8168 4.013267 AGAGCAGACTTTACAAGTGCAT 57.987 40.909 0.00 0.00 43.03 3.96
4177 8169 3.999663 AGAGCAGACTTTACAAGTGCATC 59.000 43.478 0.00 0.00 43.03 3.91
4178 8170 3.077359 AGCAGACTTTACAAGTGCATCC 58.923 45.455 0.00 0.00 43.03 3.51
4179 8171 3.077359 GCAGACTTTACAAGTGCATCCT 58.923 45.455 0.00 0.00 43.03 3.24
4180 8172 3.120060 GCAGACTTTACAAGTGCATCCTG 60.120 47.826 0.00 0.00 43.03 3.86
4181 8173 4.067896 CAGACTTTACAAGTGCATCCTGT 58.932 43.478 0.00 0.00 43.03 4.00
4182 8174 4.516698 CAGACTTTACAAGTGCATCCTGTT 59.483 41.667 0.00 0.00 43.03 3.16
4183 8175 5.700832 CAGACTTTACAAGTGCATCCTGTTA 59.299 40.000 0.00 0.00 43.03 2.41
4184 8176 6.204688 CAGACTTTACAAGTGCATCCTGTTAA 59.795 38.462 0.00 0.00 43.03 2.01
4185 8177 6.770785 AGACTTTACAAGTGCATCCTGTTAAA 59.229 34.615 0.00 0.00 43.03 1.52
4186 8178 6.970484 ACTTTACAAGTGCATCCTGTTAAAG 58.030 36.000 12.17 12.17 41.01 1.85
4187 8179 6.546034 ACTTTACAAGTGCATCCTGTTAAAGT 59.454 34.615 12.97 12.97 41.01 2.66
4188 8180 7.717875 ACTTTACAAGTGCATCCTGTTAAAGTA 59.282 33.333 15.24 0.00 41.01 2.24
4189 8181 8.453238 TTTACAAGTGCATCCTGTTAAAGTAA 57.547 30.769 0.00 0.00 0.00 2.24
4190 8182 6.952773 ACAAGTGCATCCTGTTAAAGTAAA 57.047 33.333 0.00 0.00 0.00 2.01
4191 8183 6.970484 ACAAGTGCATCCTGTTAAAGTAAAG 58.030 36.000 0.00 0.00 0.00 1.85
4192 8184 6.770785 ACAAGTGCATCCTGTTAAAGTAAAGA 59.229 34.615 0.00 0.00 0.00 2.52
4193 8185 7.448469 ACAAGTGCATCCTGTTAAAGTAAAGAT 59.552 33.333 0.00 0.00 0.00 2.40
4194 8186 8.946085 CAAGTGCATCCTGTTAAAGTAAAGATA 58.054 33.333 0.00 0.00 0.00 1.98
4195 8187 9.515226 AAGTGCATCCTGTTAAAGTAAAGATAA 57.485 29.630 0.00 0.00 0.00 1.75
4196 8188 9.167311 AGTGCATCCTGTTAAAGTAAAGATAAG 57.833 33.333 0.00 0.00 0.00 1.73
4197 8189 9.162764 GTGCATCCTGTTAAAGTAAAGATAAGA 57.837 33.333 0.00 0.00 0.00 2.10
4198 8190 9.733556 TGCATCCTGTTAAAGTAAAGATAAGAA 57.266 29.630 0.00 0.00 0.00 2.52
4210 8202 9.507329 AAGTAAAGATAAGAAAGAATGTCAGCA 57.493 29.630 0.00 0.00 0.00 4.41
4211 8203 9.160496 AGTAAAGATAAGAAAGAATGTCAGCAG 57.840 33.333 0.00 0.00 0.00 4.24
4212 8204 7.992754 AAAGATAAGAAAGAATGTCAGCAGT 57.007 32.000 0.00 0.00 0.00 4.40
4213 8205 6.981762 AGATAAGAAAGAATGTCAGCAGTG 57.018 37.500 0.00 0.00 0.00 3.66
4214 8206 3.911661 AAGAAAGAATGTCAGCAGTGC 57.088 42.857 7.13 7.13 0.00 4.40
4215 8207 2.157738 AGAAAGAATGTCAGCAGTGCC 58.842 47.619 12.58 0.00 0.00 5.01
4216 8208 1.200948 GAAAGAATGTCAGCAGTGCCC 59.799 52.381 12.58 0.30 0.00 5.36
4217 8209 0.111061 AAGAATGTCAGCAGTGCCCA 59.889 50.000 12.58 6.85 0.00 5.36
4218 8210 0.607489 AGAATGTCAGCAGTGCCCAC 60.607 55.000 12.58 9.34 0.00 4.61
4219 8211 0.607489 GAATGTCAGCAGTGCCCACT 60.607 55.000 12.58 0.00 43.61 4.00
4228 8220 3.819245 AGTGCCCACTGCTTTACAA 57.181 47.368 0.00 0.00 40.75 2.41
4229 8221 1.609208 AGTGCCCACTGCTTTACAAG 58.391 50.000 0.00 0.00 40.75 3.16
4230 8222 1.133792 AGTGCCCACTGCTTTACAAGT 60.134 47.619 0.00 0.00 40.75 3.16
4231 8223 1.001378 GTGCCCACTGCTTTACAAGTG 60.001 52.381 0.00 0.00 42.00 3.16
4232 8224 1.318576 GCCCACTGCTTTACAAGTGT 58.681 50.000 2.48 0.00 36.87 3.55
4233 8225 1.681264 GCCCACTGCTTTACAAGTGTT 59.319 47.619 2.48 0.00 36.87 3.32
4234 8226 2.287608 GCCCACTGCTTTACAAGTGTTC 60.288 50.000 2.48 0.00 36.87 3.18
4235 8227 2.948979 CCCACTGCTTTACAAGTGTTCA 59.051 45.455 2.48 0.00 0.00 3.18
4236 8228 3.569701 CCCACTGCTTTACAAGTGTTCAT 59.430 43.478 2.48 0.00 0.00 2.57
4237 8229 4.539870 CCACTGCTTTACAAGTGTTCATG 58.460 43.478 2.48 0.00 0.00 3.07
4238 8230 3.976942 CACTGCTTTACAAGTGTTCATGC 59.023 43.478 0.00 0.00 0.00 4.06
4239 8231 3.885297 ACTGCTTTACAAGTGTTCATGCT 59.115 39.130 0.00 0.00 0.00 3.79
4240 8232 4.339247 ACTGCTTTACAAGTGTTCATGCTT 59.661 37.500 0.00 0.00 0.00 3.91
4241 8233 5.163519 ACTGCTTTACAAGTGTTCATGCTTT 60.164 36.000 0.00 0.00 0.00 3.51
4242 8234 5.042593 TGCTTTACAAGTGTTCATGCTTTG 58.957 37.500 0.00 0.00 0.00 2.77
4243 8235 5.163571 TGCTTTACAAGTGTTCATGCTTTGA 60.164 36.000 0.00 0.00 0.00 2.69
4244 8236 5.922544 GCTTTACAAGTGTTCATGCTTTGAT 59.077 36.000 0.00 0.00 33.34 2.57
4245 8237 6.421801 GCTTTACAAGTGTTCATGCTTTGATT 59.578 34.615 0.00 0.00 33.34 2.57
4246 8238 7.594758 GCTTTACAAGTGTTCATGCTTTGATTA 59.405 33.333 0.00 0.00 33.34 1.75
4247 8239 9.121517 CTTTACAAGTGTTCATGCTTTGATTAG 57.878 33.333 0.00 0.00 33.34 1.73
4248 8240 6.017400 ACAAGTGTTCATGCTTTGATTAGG 57.983 37.500 0.00 0.00 33.34 2.69
4249 8241 5.769662 ACAAGTGTTCATGCTTTGATTAGGA 59.230 36.000 0.00 0.00 33.34 2.94
4250 8242 6.435277 ACAAGTGTTCATGCTTTGATTAGGAT 59.565 34.615 0.00 0.00 33.34 3.24
4251 8243 7.611467 ACAAGTGTTCATGCTTTGATTAGGATA 59.389 33.333 0.00 0.00 33.34 2.59
4252 8244 8.461222 CAAGTGTTCATGCTTTGATTAGGATAA 58.539 33.333 0.00 0.00 33.34 1.75
4253 8245 8.218338 AGTGTTCATGCTTTGATTAGGATAAG 57.782 34.615 0.00 0.00 33.34 1.73
4254 8246 8.049117 AGTGTTCATGCTTTGATTAGGATAAGA 58.951 33.333 0.00 0.00 33.34 2.10
4255 8247 8.341173 GTGTTCATGCTTTGATTAGGATAAGAG 58.659 37.037 0.00 0.00 33.34 2.85
4256 8248 8.267183 TGTTCATGCTTTGATTAGGATAAGAGA 58.733 33.333 0.00 0.00 33.34 3.10
4257 8249 9.113838 GTTCATGCTTTGATTAGGATAAGAGAA 57.886 33.333 0.00 0.00 33.34 2.87
4258 8250 9.685276 TTCATGCTTTGATTAGGATAAGAGAAA 57.315 29.630 0.00 0.00 33.34 2.52
4259 8251 9.685276 TCATGCTTTGATTAGGATAAGAGAAAA 57.315 29.630 0.00 0.00 0.00 2.29
4272 8264 8.606830 AGGATAAGAGAAAAATTCACTACAGGT 58.393 33.333 0.00 0.00 30.22 4.00
4273 8265 8.884726 GGATAAGAGAAAAATTCACTACAGGTC 58.115 37.037 0.00 0.00 30.22 3.85
4274 8266 8.794335 ATAAGAGAAAAATTCACTACAGGTCC 57.206 34.615 0.00 0.00 30.22 4.46
4275 8267 6.187727 AGAGAAAAATTCACTACAGGTCCA 57.812 37.500 0.00 0.00 0.00 4.02
4276 8268 6.784031 AGAGAAAAATTCACTACAGGTCCAT 58.216 36.000 0.00 0.00 0.00 3.41
4277 8269 7.234355 AGAGAAAAATTCACTACAGGTCCATT 58.766 34.615 0.00 0.00 0.00 3.16
4278 8270 7.725844 AGAGAAAAATTCACTACAGGTCCATTT 59.274 33.333 0.00 0.00 0.00 2.32
4279 8271 8.934023 AGAAAAATTCACTACAGGTCCATTTA 57.066 30.769 0.00 0.00 0.00 1.40
4280 8272 8.793592 AGAAAAATTCACTACAGGTCCATTTAC 58.206 33.333 0.00 0.00 0.00 2.01
4281 8273 8.706322 AAAAATTCACTACAGGTCCATTTACT 57.294 30.769 0.00 0.00 0.00 2.24
4282 8274 8.706322 AAAATTCACTACAGGTCCATTTACTT 57.294 30.769 0.00 0.00 0.00 2.24
4283 8275 7.687941 AATTCACTACAGGTCCATTTACTTG 57.312 36.000 0.00 0.00 33.01 3.16
4284 8276 4.575885 TCACTACAGGTCCATTTACTTGC 58.424 43.478 0.00 0.00 30.00 4.01
4285 8277 4.041075 TCACTACAGGTCCATTTACTTGCA 59.959 41.667 0.00 0.00 30.00 4.08
4286 8278 4.943705 CACTACAGGTCCATTTACTTGCAT 59.056 41.667 0.00 0.00 30.00 3.96
4287 8279 5.415701 CACTACAGGTCCATTTACTTGCATT 59.584 40.000 0.00 0.00 30.00 3.56
4288 8280 4.789012 ACAGGTCCATTTACTTGCATTG 57.211 40.909 0.00 0.00 30.00 2.82
4289 8281 3.511146 ACAGGTCCATTTACTTGCATTGG 59.489 43.478 0.00 0.00 30.00 3.16
4290 8282 2.497273 AGGTCCATTTACTTGCATTGGC 59.503 45.455 0.00 0.00 41.68 4.52
4291 8283 2.529151 GTCCATTTACTTGCATTGGCG 58.471 47.619 0.00 0.00 45.35 5.69
4292 8284 2.094752 GTCCATTTACTTGCATTGGCGT 60.095 45.455 0.00 0.00 45.35 5.68
4293 8285 2.560542 TCCATTTACTTGCATTGGCGTT 59.439 40.909 0.00 0.00 45.35 4.84
4294 8286 3.759086 TCCATTTACTTGCATTGGCGTTA 59.241 39.130 0.00 0.00 45.35 3.18
4295 8287 4.104776 CCATTTACTTGCATTGGCGTTAG 58.895 43.478 0.00 0.00 45.35 2.34
4296 8288 4.380444 CCATTTACTTGCATTGGCGTTAGT 60.380 41.667 0.00 0.00 45.35 2.24
4297 8289 4.839668 TTTACTTGCATTGGCGTTAGTT 57.160 36.364 0.00 0.00 45.35 2.24
4298 8290 4.839668 TTACTTGCATTGGCGTTAGTTT 57.160 36.364 0.00 0.00 45.35 2.66
4299 8291 3.726291 ACTTGCATTGGCGTTAGTTTT 57.274 38.095 0.00 0.00 45.35 2.43
4300 8292 4.839668 ACTTGCATTGGCGTTAGTTTTA 57.160 36.364 0.00 0.00 45.35 1.52
4301 8293 4.794169 ACTTGCATTGGCGTTAGTTTTAG 58.206 39.130 0.00 0.00 45.35 1.85
4302 8294 4.277423 ACTTGCATTGGCGTTAGTTTTAGT 59.723 37.500 0.00 0.00 45.35 2.24
4303 8295 4.413495 TGCATTGGCGTTAGTTTTAGTC 57.587 40.909 0.00 0.00 45.35 2.59
4304 8296 4.069304 TGCATTGGCGTTAGTTTTAGTCT 58.931 39.130 0.00 0.00 45.35 3.24
4305 8297 4.517453 TGCATTGGCGTTAGTTTTAGTCTT 59.483 37.500 0.00 0.00 45.35 3.01
4306 8298 5.009210 TGCATTGGCGTTAGTTTTAGTCTTT 59.991 36.000 0.00 0.00 45.35 2.52
4307 8299 6.205076 TGCATTGGCGTTAGTTTTAGTCTTTA 59.795 34.615 0.00 0.00 45.35 1.85
4308 8300 7.094549 TGCATTGGCGTTAGTTTTAGTCTTTAT 60.095 33.333 0.00 0.00 45.35 1.40
4309 8301 7.218204 GCATTGGCGTTAGTTTTAGTCTTTATG 59.782 37.037 0.00 0.00 0.00 1.90
4310 8302 6.730960 TGGCGTTAGTTTTAGTCTTTATGG 57.269 37.500 0.00 0.00 0.00 2.74
4311 8303 6.232692 TGGCGTTAGTTTTAGTCTTTATGGT 58.767 36.000 0.00 0.00 0.00 3.55
4312 8304 6.711645 TGGCGTTAGTTTTAGTCTTTATGGTT 59.288 34.615 0.00 0.00 0.00 3.67
4313 8305 7.877097 TGGCGTTAGTTTTAGTCTTTATGGTTA 59.123 33.333 0.00 0.00 0.00 2.85
4314 8306 8.171196 GGCGTTAGTTTTAGTCTTTATGGTTAC 58.829 37.037 0.00 0.00 0.00 2.50
4315 8307 8.711457 GCGTTAGTTTTAGTCTTTATGGTTACA 58.289 33.333 0.00 0.00 0.00 2.41
4323 8315 8.721019 TTAGTCTTTATGGTTACAAATACCCG 57.279 34.615 0.00 0.00 34.66 5.28
4324 8316 5.587443 AGTCTTTATGGTTACAAATACCCGC 59.413 40.000 0.00 0.00 34.66 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.372343 ACTAGTGGCATTGATATCACCAA 57.628 39.130 13.56 0.00 30.82 3.67
62 63 6.939163 AGGAATGAACTAGTGGCATTGATATC 59.061 38.462 22.02 11.57 32.80 1.63
175 176 4.229096 CGCACTCAAAAATTGCACACTAT 58.771 39.130 0.00 0.00 35.93 2.12
200 201 0.333993 ATGAGCCTGGGCACTGAAAT 59.666 50.000 14.39 0.00 44.88 2.17
205 206 2.996395 CAGATGAGCCTGGGCACT 59.004 61.111 14.39 4.88 44.88 4.40
268 269 8.895737 CCCCTGAATATTTCATTTTGGAAATTG 58.104 33.333 6.47 0.00 43.13 2.32
271 272 6.956497 CCCCCTGAATATTTCATTTTGGAAA 58.044 36.000 0.00 0.00 39.30 3.13
295 296 2.031120 AGCAGCAGACTACATCTCTCC 58.969 52.381 0.00 0.00 34.41 3.71
337 345 5.929992 CCGGTACAAGATTTCTGTTCAGTAA 59.070 40.000 0.00 0.00 0.00 2.24
402 410 4.262079 CCGGGTCCATGAGAAACTCTATAC 60.262 50.000 0.00 0.00 0.00 1.47
405 417 2.108168 CCGGGTCCATGAGAAACTCTA 58.892 52.381 0.00 0.00 0.00 2.43
428 440 0.037790 GACAGTCTGAGTGGGCTGAC 60.038 60.000 16.35 0.00 37.10 3.51
535 566 4.798682 GAGAGGGGGAGGCCGGAA 62.799 72.222 5.05 0.00 0.00 4.30
540 571 4.423209 ACCTGGAGAGGGGGAGGC 62.423 72.222 0.00 0.00 44.84 4.70
541 572 2.041405 GACCTGGAGAGGGGGAGG 60.041 72.222 0.00 0.00 44.84 4.30
542 573 2.041405 GGACCTGGAGAGGGGGAG 60.041 72.222 0.00 0.00 44.84 4.30
543 574 2.540910 AGGACCTGGAGAGGGGGA 60.541 66.667 0.00 0.00 44.84 4.81
544 575 2.366167 CAGGACCTGGAGAGGGGG 60.366 72.222 14.26 0.00 44.84 5.40
545 576 0.842467 AAACAGGACCTGGAGAGGGG 60.842 60.000 25.34 0.00 44.84 4.79
546 577 0.326264 CAAACAGGACCTGGAGAGGG 59.674 60.000 25.34 5.12 44.84 4.30
547 578 0.322008 GCAAACAGGACCTGGAGAGG 60.322 60.000 25.34 10.80 46.21 3.69
548 579 0.671781 CGCAAACAGGACCTGGAGAG 60.672 60.000 25.34 12.08 35.51 3.20
549 580 1.118965 TCGCAAACAGGACCTGGAGA 61.119 55.000 25.34 11.90 35.51 3.71
550 581 0.671781 CTCGCAAACAGGACCTGGAG 60.672 60.000 25.34 16.62 35.51 3.86
551 582 1.371183 CTCGCAAACAGGACCTGGA 59.629 57.895 25.34 11.32 35.51 3.86
552 583 1.071471 ACTCGCAAACAGGACCTGG 59.929 57.895 25.34 9.05 35.51 4.45
553 584 1.845809 GCACTCGCAAACAGGACCTG 61.846 60.000 20.45 20.45 38.36 4.00
554 585 1.598130 GCACTCGCAAACAGGACCT 60.598 57.895 0.00 0.00 38.36 3.85
555 586 2.946762 GCACTCGCAAACAGGACC 59.053 61.111 0.00 0.00 38.36 4.46
556 587 2.551270 CGCACTCGCAAACAGGAC 59.449 61.111 0.00 0.00 38.40 3.85
650 681 4.479993 CAGGCCGGCAGGGAAGAG 62.480 72.222 30.85 3.97 38.47 2.85
693 724 2.301738 GCCAGTTAGGGGAGCCAGT 61.302 63.158 0.00 0.00 38.09 4.00
705 736 0.533308 TACAAAGAACGGCGCCAGTT 60.533 50.000 28.30 28.30 34.07 3.16
780 820 4.573201 TGCTATTTGGTGGTAATTCGCTAC 59.427 41.667 0.00 0.00 0.00 3.58
815 855 4.065321 ACTAATCCCTGCGAATTCTCTG 57.935 45.455 3.52 0.00 0.00 3.35
887 932 8.691797 TGTCATACTAAGCACATGTGTCTATAA 58.308 33.333 26.01 9.66 0.00 0.98
915 960 6.864360 ATATTTATTTTTAGCGCCACGGTA 57.136 33.333 2.29 0.00 38.83 4.02
992 1084 8.437575 TCTAAGAAACCCTAAATGGCCTAATAG 58.562 37.037 3.32 3.25 0.00 1.73
1042 1144 5.902681 TCTACTTCGACACAAGATAATGGG 58.097 41.667 0.00 0.00 0.00 4.00
1043 1145 7.595502 GGTATCTACTTCGACACAAGATAATGG 59.404 40.741 7.26 0.00 32.52 3.16
1057 1159 6.150396 AGACAAATCTGGGTATCTACTTCG 57.850 41.667 0.00 0.00 32.29 3.79
1503 1609 8.986477 TGTAATGCTAGTATGCTACATATGTG 57.014 34.615 18.81 9.42 0.00 3.21
1551 1661 7.093354 TCATATAGACATGCTACTTTGCTAGC 58.907 38.462 8.10 8.10 39.81 3.42
1707 3662 5.794945 CAGTAAAGAACCAATGTAACATGCG 59.205 40.000 0.00 0.00 0.00 4.73
1730 3686 6.430925 AGAACAATCAGCTAAAGTGCATTACA 59.569 34.615 0.00 0.00 34.99 2.41
1740 4071 7.725251 ACAAAAATCCAGAACAATCAGCTAAA 58.275 30.769 0.00 0.00 0.00 1.85
1827 4173 7.158021 GCTCTAAGCCAGAATACTCATACAAT 58.842 38.462 0.00 0.00 34.48 2.71
1842 4188 2.014128 GCGGTAATTTGCTCTAAGCCA 58.986 47.619 0.00 0.00 41.51 4.75
1864 4211 5.925509 AGGTTAAGCAAGACAGACAAACTA 58.074 37.500 7.52 0.00 0.00 2.24
1900 4252 9.586435 GATACATGCATACATACATAGCACTTA 57.414 33.333 0.00 0.00 38.12 2.24
1901 4253 8.096414 TGATACATGCATACATACATAGCACTT 58.904 33.333 0.00 0.00 38.12 3.16
2018 4388 7.509546 ACTGAAAGGAGTCTGAAAATGAACTA 58.490 34.615 0.00 0.00 39.30 2.24
2022 4392 6.428159 GCTAACTGAAAGGAGTCTGAAAATGA 59.572 38.462 0.00 0.00 39.30 2.57
2186 4685 3.059461 ACAAACAGCATTAACCACGTACG 60.059 43.478 15.01 15.01 0.00 3.67
2310 4809 2.409948 AGCCTGGCTGTAAGATTGAC 57.590 50.000 22.71 0.00 37.57 3.18
2451 4950 2.764572 CACGATACCCTTTCCACTACCT 59.235 50.000 0.00 0.00 0.00 3.08
2527 6319 6.254281 AGTTATTACTGTTGGCATGTTCAC 57.746 37.500 0.00 0.00 31.99 3.18
2680 6517 1.613925 GAAAACTGCCCCTTTCTCCAC 59.386 52.381 0.00 0.00 0.00 4.02
2759 6599 7.907045 CACATTTATCATGTGTGCTTTCTACTC 59.093 37.037 6.78 0.00 43.11 2.59
2808 6648 9.448438 TGTTCACATGCACTAGTATTTTTAGAT 57.552 29.630 0.00 0.00 0.00 1.98
2850 6690 2.293170 GACCCAGCTAGAAATTCTGCC 58.707 52.381 5.64 0.00 0.00 4.85
2946 6798 5.447279 CGCTTTGTTGTTCAGTGTACTTCTT 60.447 40.000 1.38 0.00 0.00 2.52
3050 6902 4.504132 CAGCCGGCTGAGTAGAAC 57.496 61.111 46.72 5.29 46.30 3.01
3187 7042 4.580580 CAGGGGCCAACTGTAAAAGATATC 59.419 45.833 16.30 0.00 0.00 1.63
3207 7062 1.001815 CCAACGTTTACAACAGGCAGG 60.002 52.381 0.00 0.00 0.00 4.85
3208 7063 1.001815 CCCAACGTTTACAACAGGCAG 60.002 52.381 0.00 0.00 0.00 4.85
3209 7064 1.025812 CCCAACGTTTACAACAGGCA 58.974 50.000 0.00 0.00 0.00 4.75
3210 7065 0.318360 GCCCAACGTTTACAACAGGC 60.318 55.000 0.00 0.00 0.00 4.85
3369 7237 3.209410 CACAGGTGAATATCCAAGCCTC 58.791 50.000 0.00 0.00 0.00 4.70
3475 7343 6.038997 ACCTGTATACAGAGAACAAACTCC 57.961 41.667 30.41 0.00 46.59 3.85
3619 7487 3.432378 AGTACTAACAGAGAGTGGTGGG 58.568 50.000 0.00 0.00 0.00 4.61
3686 7554 7.713734 TGGGTGCTATATAGATTAGTACCAC 57.286 40.000 14.16 8.72 44.79 4.16
3753 7675 2.990967 AGCATTGGGTTGGTGCCG 60.991 61.111 0.00 0.00 39.62 5.69
3754 7676 2.973082 GAGCATTGGGTTGGTGCC 59.027 61.111 0.00 0.00 39.62 5.01
3755 7677 2.268076 ACGAGCATTGGGTTGGTGC 61.268 57.895 0.00 0.00 39.10 5.01
3756 7678 1.172180 ACACGAGCATTGGGTTGGTG 61.172 55.000 0.00 0.00 24.20 4.17
3758 7680 0.606401 AGACACGAGCATTGGGTTGG 60.606 55.000 0.00 0.00 35.11 3.77
3759 7681 2.093306 TAGACACGAGCATTGGGTTG 57.907 50.000 0.00 0.00 35.11 3.77
3760 7682 2.699954 CTTAGACACGAGCATTGGGTT 58.300 47.619 0.00 0.00 35.11 4.11
3763 7685 1.009829 GGCTTAGACACGAGCATTGG 58.990 55.000 0.00 0.00 40.63 3.16
3820 7802 5.122519 TGCCTCTGTGAATTAATCGCATAA 58.877 37.500 0.00 0.00 46.90 1.90
3826 7809 8.213518 TGTATCTTTGCCTCTGTGAATTAATC 57.786 34.615 0.00 0.00 0.00 1.75
3916 7899 0.379669 CGGCAGTTCCAGCATCATTC 59.620 55.000 0.00 0.00 34.01 2.67
3917 7900 1.660560 GCGGCAGTTCCAGCATCATT 61.661 55.000 0.00 0.00 35.45 2.57
3918 7901 2.117156 GCGGCAGTTCCAGCATCAT 61.117 57.895 0.00 0.00 35.45 2.45
3919 7902 2.747460 GCGGCAGTTCCAGCATCA 60.747 61.111 0.00 0.00 35.45 3.07
3920 7903 2.437359 AGCGGCAGTTCCAGCATC 60.437 61.111 1.45 0.00 37.01 3.91
3921 7904 2.749044 CAGCGGCAGTTCCAGCAT 60.749 61.111 1.45 0.00 37.01 3.79
3923 7906 3.958147 TAGCAGCGGCAGTTCCAGC 62.958 63.158 12.44 0.00 44.61 4.85
3947 7930 3.205784 GGCACCTCAAAGCTAGATCAT 57.794 47.619 0.00 0.00 0.00 2.45
3968 7951 1.134753 TCAAGCCAACACACAAAGCAG 59.865 47.619 0.00 0.00 0.00 4.24
3969 7952 1.180907 TCAAGCCAACACACAAAGCA 58.819 45.000 0.00 0.00 0.00 3.91
3970 7953 2.035066 AGATCAAGCCAACACACAAAGC 59.965 45.455 0.00 0.00 0.00 3.51
3971 7954 3.996150 AGATCAAGCCAACACACAAAG 57.004 42.857 0.00 0.00 0.00 2.77
3972 7955 3.253188 GCTAGATCAAGCCAACACACAAA 59.747 43.478 0.00 0.00 36.45 2.83
3999 7985 4.893424 TGCGGTTATCTTTTTATCTGGC 57.107 40.909 0.00 0.00 0.00 4.85
4018 8004 7.515684 GCGTCAAGATTTGGATCAAAATTATGC 60.516 37.037 9.48 8.82 36.90 3.14
4043 8030 3.393089 TTGTCCTCTTGACTTGAGAGC 57.607 47.619 0.00 0.00 44.75 4.09
4055 8042 0.981183 TGCCGGTGTAATTGTCCTCT 59.019 50.000 1.90 0.00 0.00 3.69
4056 8043 1.338769 ACTGCCGGTGTAATTGTCCTC 60.339 52.381 1.90 0.00 0.00 3.71
4096 8088 1.341369 TTCTGCACGATACACGCACG 61.341 55.000 0.00 0.00 46.94 5.34
4097 8089 0.093026 GTTCTGCACGATACACGCAC 59.907 55.000 0.00 0.00 46.94 5.34
4098 8090 0.038618 AGTTCTGCACGATACACGCA 60.039 50.000 0.00 0.00 46.94 5.24
4099 8091 0.640768 GAGTTCTGCACGATACACGC 59.359 55.000 0.00 0.00 46.94 5.34
4100 8092 7.603039 AACCTAGAGTTCTGCACGATACACG 62.603 48.000 0.00 0.00 40.62 4.49
4140 8132 3.891977 TCTGCTCTACTTAATGATCGGCT 59.108 43.478 0.00 0.00 0.00 5.52
4141 8133 3.984633 GTCTGCTCTACTTAATGATCGGC 59.015 47.826 0.00 0.00 0.00 5.54
4142 8134 5.446143 AGTCTGCTCTACTTAATGATCGG 57.554 43.478 0.00 0.00 0.00 4.18
4143 8135 7.915923 TGTAAAGTCTGCTCTACTTAATGATCG 59.084 37.037 0.00 0.00 36.17 3.69
4144 8136 9.587772 TTGTAAAGTCTGCTCTACTTAATGATC 57.412 33.333 0.00 0.00 36.17 2.92
4145 8137 9.593134 CTTGTAAAGTCTGCTCTACTTAATGAT 57.407 33.333 0.00 0.00 39.70 2.45
4146 8138 8.988064 CTTGTAAAGTCTGCTCTACTTAATGA 57.012 34.615 0.00 0.00 39.70 2.57
4164 8156 6.952773 ACTTTAACAGGATGCACTTGTAAA 57.047 33.333 0.00 0.00 42.53 2.01
4165 8157 8.453238 TTTACTTTAACAGGATGCACTTGTAA 57.547 30.769 0.00 0.00 42.53 2.41
4166 8158 7.934665 TCTTTACTTTAACAGGATGCACTTGTA 59.065 33.333 0.00 0.00 42.53 2.41
4167 8159 6.770785 TCTTTACTTTAACAGGATGCACTTGT 59.229 34.615 0.00 0.00 42.53 3.16
4168 8160 7.202016 TCTTTACTTTAACAGGATGCACTTG 57.798 36.000 0.00 0.00 42.53 3.16
4169 8161 9.515226 TTATCTTTACTTTAACAGGATGCACTT 57.485 29.630 0.00 0.00 42.53 3.16
4170 8162 9.167311 CTTATCTTTACTTTAACAGGATGCACT 57.833 33.333 0.00 0.00 42.53 4.40
4171 8163 9.162764 TCTTATCTTTACTTTAACAGGATGCAC 57.837 33.333 0.00 0.00 42.53 4.57
4172 8164 9.733556 TTCTTATCTTTACTTTAACAGGATGCA 57.266 29.630 0.00 0.00 42.53 3.96
4184 8176 9.507329 TGCTGACATTCTTTCTTATCTTTACTT 57.493 29.630 0.00 0.00 0.00 2.24
4185 8177 9.160496 CTGCTGACATTCTTTCTTATCTTTACT 57.840 33.333 0.00 0.00 0.00 2.24
4186 8178 8.940952 ACTGCTGACATTCTTTCTTATCTTTAC 58.059 33.333 0.00 0.00 0.00 2.01
4187 8179 8.939929 CACTGCTGACATTCTTTCTTATCTTTA 58.060 33.333 0.00 0.00 0.00 1.85
4188 8180 7.574592 GCACTGCTGACATTCTTTCTTATCTTT 60.575 37.037 0.00 0.00 0.00 2.52
4189 8181 6.128063 GCACTGCTGACATTCTTTCTTATCTT 60.128 38.462 0.00 0.00 0.00 2.40
4190 8182 5.353678 GCACTGCTGACATTCTTTCTTATCT 59.646 40.000 0.00 0.00 0.00 1.98
4191 8183 5.448360 GGCACTGCTGACATTCTTTCTTATC 60.448 44.000 0.00 0.00 0.00 1.75
4192 8184 4.397417 GGCACTGCTGACATTCTTTCTTAT 59.603 41.667 0.00 0.00 0.00 1.73
4193 8185 3.753272 GGCACTGCTGACATTCTTTCTTA 59.247 43.478 0.00 0.00 0.00 2.10
4194 8186 2.555757 GGCACTGCTGACATTCTTTCTT 59.444 45.455 0.00 0.00 0.00 2.52
4195 8187 2.157738 GGCACTGCTGACATTCTTTCT 58.842 47.619 0.00 0.00 0.00 2.52
4196 8188 1.200948 GGGCACTGCTGACATTCTTTC 59.799 52.381 0.00 0.00 0.00 2.62
4197 8189 1.251251 GGGCACTGCTGACATTCTTT 58.749 50.000 0.00 0.00 0.00 2.52
4198 8190 0.111061 TGGGCACTGCTGACATTCTT 59.889 50.000 0.00 0.00 0.00 2.52
4199 8191 0.607489 GTGGGCACTGCTGACATTCT 60.607 55.000 0.00 0.00 0.00 2.40
4200 8192 0.607489 AGTGGGCACTGCTGACATTC 60.607 55.000 0.00 0.00 40.75 2.67
4201 8193 1.457604 AGTGGGCACTGCTGACATT 59.542 52.632 0.00 0.00 40.75 2.71
4202 8194 3.164479 AGTGGGCACTGCTGACAT 58.836 55.556 0.00 0.00 40.75 3.06
4217 8209 9.234361 TCAAAGCATGAACACTTGTAAAGCAGT 62.234 37.037 0.00 0.00 41.00 4.40
4218 8210 6.952168 TCAAAGCATGAACACTTGTAAAGCAG 60.952 38.462 0.00 0.00 41.00 4.24
4219 8211 5.163571 TCAAAGCATGAACACTTGTAAAGCA 60.164 36.000 0.00 0.00 41.00 3.91
4220 8212 5.280945 TCAAAGCATGAACACTTGTAAAGC 58.719 37.500 0.00 0.00 41.00 3.51
4221 8213 7.935338 AATCAAAGCATGAACACTTGTAAAG 57.065 32.000 0.00 0.00 46.04 1.85
4222 8214 8.081633 CCTAATCAAAGCATGAACACTTGTAAA 58.918 33.333 0.00 0.00 42.54 2.01
4223 8215 7.446931 TCCTAATCAAAGCATGAACACTTGTAA 59.553 33.333 0.00 0.00 42.54 2.41
4224 8216 6.939730 TCCTAATCAAAGCATGAACACTTGTA 59.060 34.615 0.00 0.00 42.54 2.41
4225 8217 5.769662 TCCTAATCAAAGCATGAACACTTGT 59.230 36.000 0.00 0.00 42.54 3.16
4226 8218 6.258230 TCCTAATCAAAGCATGAACACTTG 57.742 37.500 0.00 0.00 42.54 3.16
4227 8219 8.579850 TTATCCTAATCAAAGCATGAACACTT 57.420 30.769 0.00 0.00 42.54 3.16
4228 8220 8.049117 TCTTATCCTAATCAAAGCATGAACACT 58.951 33.333 0.00 0.00 42.54 3.55
4229 8221 8.213518 TCTTATCCTAATCAAAGCATGAACAC 57.786 34.615 0.00 0.00 42.54 3.32
4230 8222 8.267183 TCTCTTATCCTAATCAAAGCATGAACA 58.733 33.333 0.00 0.00 42.54 3.18
4231 8223 8.668510 TCTCTTATCCTAATCAAAGCATGAAC 57.331 34.615 0.00 0.00 42.54 3.18
4232 8224 9.685276 TTTCTCTTATCCTAATCAAAGCATGAA 57.315 29.630 0.00 0.00 42.54 2.57
4233 8225 9.685276 TTTTCTCTTATCCTAATCAAAGCATGA 57.315 29.630 0.00 0.00 43.67 3.07
4246 8238 8.606830 ACCTGTAGTGAATTTTTCTCTTATCCT 58.393 33.333 0.00 0.00 35.37 3.24
4247 8239 8.794335 ACCTGTAGTGAATTTTTCTCTTATCC 57.206 34.615 0.00 0.00 35.37 2.59
4248 8240 8.884726 GGACCTGTAGTGAATTTTTCTCTTATC 58.115 37.037 0.00 0.00 35.37 1.75
4249 8241 8.383175 TGGACCTGTAGTGAATTTTTCTCTTAT 58.617 33.333 0.00 0.00 35.37 1.73
4250 8242 7.741785 TGGACCTGTAGTGAATTTTTCTCTTA 58.258 34.615 0.00 0.00 35.37 2.10
4251 8243 6.601332 TGGACCTGTAGTGAATTTTTCTCTT 58.399 36.000 0.00 0.00 35.37 2.85
4252 8244 6.187727 TGGACCTGTAGTGAATTTTTCTCT 57.812 37.500 0.00 0.00 37.31 3.10
4253 8245 7.454260 AATGGACCTGTAGTGAATTTTTCTC 57.546 36.000 0.00 0.00 0.00 2.87
4254 8246 7.839680 AAATGGACCTGTAGTGAATTTTTCT 57.160 32.000 0.00 0.00 0.00 2.52
4255 8247 8.793592 AGTAAATGGACCTGTAGTGAATTTTTC 58.206 33.333 0.00 0.00 0.00 2.29
4256 8248 8.706322 AGTAAATGGACCTGTAGTGAATTTTT 57.294 30.769 0.00 0.00 0.00 1.94
4257 8249 8.576442 CAAGTAAATGGACCTGTAGTGAATTTT 58.424 33.333 0.00 0.00 0.00 1.82
4258 8250 7.309194 GCAAGTAAATGGACCTGTAGTGAATTT 60.309 37.037 0.00 0.00 0.00 1.82
4259 8251 6.151144 GCAAGTAAATGGACCTGTAGTGAATT 59.849 38.462 0.00 0.00 0.00 2.17
4260 8252 5.648092 GCAAGTAAATGGACCTGTAGTGAAT 59.352 40.000 0.00 0.00 0.00 2.57
4261 8253 5.001232 GCAAGTAAATGGACCTGTAGTGAA 58.999 41.667 0.00 0.00 0.00 3.18
4262 8254 4.041075 TGCAAGTAAATGGACCTGTAGTGA 59.959 41.667 0.00 0.00 0.00 3.41
4263 8255 4.323417 TGCAAGTAAATGGACCTGTAGTG 58.677 43.478 0.00 0.00 0.00 2.74
4264 8256 4.634012 TGCAAGTAAATGGACCTGTAGT 57.366 40.909 0.00 0.00 0.00 2.73
4265 8257 5.163622 CCAATGCAAGTAAATGGACCTGTAG 60.164 44.000 0.00 0.00 32.82 2.74
4266 8258 4.704540 CCAATGCAAGTAAATGGACCTGTA 59.295 41.667 0.00 0.00 32.82 2.74
4267 8259 3.511146 CCAATGCAAGTAAATGGACCTGT 59.489 43.478 0.00 0.00 32.82 4.00
4268 8260 3.676873 GCCAATGCAAGTAAATGGACCTG 60.677 47.826 0.00 0.00 37.47 4.00
4269 8261 2.497273 GCCAATGCAAGTAAATGGACCT 59.503 45.455 0.00 0.00 37.47 3.85
4270 8262 2.735126 CGCCAATGCAAGTAAATGGACC 60.735 50.000 0.00 0.00 37.32 4.46
4271 8263 2.094752 ACGCCAATGCAAGTAAATGGAC 60.095 45.455 0.00 0.00 37.32 4.02
4272 8264 2.166829 ACGCCAATGCAAGTAAATGGA 58.833 42.857 0.00 0.00 37.32 3.41
4273 8265 2.652941 ACGCCAATGCAAGTAAATGG 57.347 45.000 0.00 0.00 37.32 3.16
4274 8266 4.732784 ACTAACGCCAATGCAAGTAAATG 58.267 39.130 0.00 0.00 37.32 2.32
4275 8267 5.385509 AACTAACGCCAATGCAAGTAAAT 57.614 34.783 0.00 0.00 37.32 1.40
4276 8268 4.839668 AACTAACGCCAATGCAAGTAAA 57.160 36.364 0.00 0.00 37.32 2.01
4277 8269 4.839668 AAACTAACGCCAATGCAAGTAA 57.160 36.364 0.00 0.00 37.32 2.24
4278 8270 4.839668 AAAACTAACGCCAATGCAAGTA 57.160 36.364 0.00 0.00 37.32 2.24
4279 8271 3.726291 AAAACTAACGCCAATGCAAGT 57.274 38.095 0.00 0.00 37.32 3.16
4280 8272 4.794169 ACTAAAACTAACGCCAATGCAAG 58.206 39.130 0.00 0.00 37.32 4.01
4281 8273 4.517453 AGACTAAAACTAACGCCAATGCAA 59.483 37.500 0.00 0.00 37.32 4.08
4282 8274 4.069304 AGACTAAAACTAACGCCAATGCA 58.931 39.130 0.00 0.00 37.32 3.96
4283 8275 4.680171 AGACTAAAACTAACGCCAATGC 57.320 40.909 0.00 0.00 0.00 3.56
4284 8276 7.696453 CCATAAAGACTAAAACTAACGCCAATG 59.304 37.037 0.00 0.00 0.00 2.82
4285 8277 7.392393 ACCATAAAGACTAAAACTAACGCCAAT 59.608 33.333 0.00 0.00 0.00 3.16
4286 8278 6.711645 ACCATAAAGACTAAAACTAACGCCAA 59.288 34.615 0.00 0.00 0.00 4.52
4287 8279 6.232692 ACCATAAAGACTAAAACTAACGCCA 58.767 36.000 0.00 0.00 0.00 5.69
4288 8280 6.732531 ACCATAAAGACTAAAACTAACGCC 57.267 37.500 0.00 0.00 0.00 5.68
4289 8281 8.711457 TGTAACCATAAAGACTAAAACTAACGC 58.289 33.333 0.00 0.00 0.00 4.84
4297 8289 9.165035 CGGGTATTTGTAACCATAAAGACTAAA 57.835 33.333 0.00 0.00 38.87 1.85
4298 8290 7.280652 GCGGGTATTTGTAACCATAAAGACTAA 59.719 37.037 0.00 0.00 38.87 2.24
4299 8291 6.762661 GCGGGTATTTGTAACCATAAAGACTA 59.237 38.462 0.00 0.00 38.87 2.59
4300 8292 5.587443 GCGGGTATTTGTAACCATAAAGACT 59.413 40.000 0.00 0.00 38.87 3.24
4301 8293 5.813717 GCGGGTATTTGTAACCATAAAGAC 58.186 41.667 0.00 0.00 38.87 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.