Multiple sequence alignment - TraesCS1B01G464400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G464400 chr1B 100.000 3420 0 0 1 3420 675899550 675902969 0.000000e+00 6316.0
1 TraesCS1B01G464400 chr1B 91.503 459 33 1 2884 3336 593786948 593786490 8.060000e-176 627.0
2 TraesCS1B01G464400 chr1B 89.577 355 27 7 2401 2748 593787298 593786947 3.130000e-120 442.0
3 TraesCS1B01G464400 chr1B 91.034 145 13 0 3272 3416 593786490 593786346 2.690000e-46 196.0
4 TraesCS1B01G464400 chr2B 85.848 1067 79 28 581 1616 134341014 134342039 0.000000e+00 1068.0
5 TraesCS1B01G464400 chr2B 88.309 556 46 12 700 1237 100102028 100101474 0.000000e+00 649.0
6 TraesCS1B01G464400 chr2B 87.053 587 56 13 666 1234 392005701 392006285 0.000000e+00 645.0
7 TraesCS1B01G464400 chr2B 90.281 391 17 10 628 1008 759993924 759994303 3.070000e-135 492.0
8 TraesCS1B01G464400 chr2B 90.446 314 23 1 1616 1929 100101128 100100822 1.140000e-109 407.0
9 TraesCS1B01G464400 chr2B 90.446 314 23 1 1616 1929 392006635 392006941 1.140000e-109 407.0
10 TraesCS1B01G464400 chr2B 81.957 327 44 12 236 548 134340509 134340834 2.620000e-66 263.0
11 TraesCS1B01G464400 chr2B 93.478 46 3 0 183 228 134340428 134340473 6.120000e-08 69.4
12 TraesCS1B01G464400 chr4A 84.991 1066 87 30 581 1616 658381113 658382135 0.000000e+00 1014.0
13 TraesCS1B01G464400 chr4A 88.288 555 47 11 700 1237 742008942 742008389 0.000000e+00 649.0
14 TraesCS1B01G464400 chr4A 87.805 205 14 5 378 575 658380830 658381030 2.650000e-56 230.0
15 TraesCS1B01G464400 chr7A 93.491 676 35 6 948 1616 617598416 617599089 0.000000e+00 996.0
16 TraesCS1B01G464400 chr7A 92.658 681 37 6 948 1616 41464868 41464189 0.000000e+00 968.0
17 TraesCS1B01G464400 chr7A 90.937 331 17 2 1616 1946 41464129 41463812 1.890000e-117 433.0
18 TraesCS1B01G464400 chr7A 90.937 331 17 2 1616 1946 617599149 617599466 1.890000e-117 433.0
19 TraesCS1B01G464400 chr7A 89.247 279 27 3 2883 3160 658273924 658274200 2.530000e-91 346.0
20 TraesCS1B01G464400 chr7A 90.204 245 22 2 1944 2186 28905368 28905124 5.510000e-83 318.0
21 TraesCS1B01G464400 chr7A 91.626 203 9 6 758 952 41465567 41465365 1.210000e-69 274.0
22 TraesCS1B01G464400 chr7A 80.229 349 34 16 248 561 658271300 658271648 2.650000e-56 230.0
23 TraesCS1B01G464400 chr7A 96.800 125 2 2 2763 2885 20964185 20964309 1.240000e-49 207.0
24 TraesCS1B01G464400 chr7A 89.091 165 18 0 3252 3416 658274204 658274368 4.470000e-49 206.0
25 TraesCS1B01G464400 chr7A 87.574 169 21 0 3248 3416 576790833 576790665 2.690000e-46 196.0
26 TraesCS1B01G464400 chr2A 93.195 676 37 6 948 1616 756524383 756525056 0.000000e+00 985.0
27 TraesCS1B01G464400 chr2A 90.634 331 18 2 1616 1946 756525116 756525433 8.770000e-116 427.0
28 TraesCS1B01G464400 chr2A 88.757 169 19 0 3248 3416 764885040 764885208 1.240000e-49 207.0
29 TraesCS1B01G464400 chr2A 95.868 121 5 0 2768 2888 151265653 151265533 2.690000e-46 196.0
30 TraesCS1B01G464400 chr3B 90.290 587 48 6 2188 2769 60389028 60389610 0.000000e+00 760.0
31 TraesCS1B01G464400 chr3B 91.164 464 34 2 2884 3340 132084537 132085000 1.040000e-174 623.0
32 TraesCS1B01G464400 chr3B 88.451 355 31 7 2401 2748 132084187 132084538 1.470000e-113 420.0
33 TraesCS1B01G464400 chr3B 96.610 118 4 0 2767 2884 57638670 57638787 2.690000e-46 196.0
34 TraesCS1B01G464400 chr5D 88.707 611 46 12 1018 1616 27280867 27281466 0.000000e+00 725.0
35 TraesCS1B01G464400 chr5D 89.606 279 26 3 2883 3160 27285658 27285934 5.430000e-93 351.0
36 TraesCS1B01G464400 chr5D 89.568 278 28 1 2883 3160 431989327 431989603 5.430000e-93 351.0
37 TraesCS1B01G464400 chr5D 90.323 248 18 2 1939 2186 445023905 445023664 1.530000e-83 320.0
38 TraesCS1B01G464400 chr5D 90.435 230 17 4 2542 2769 431988975 431989201 7.170000e-77 298.0
39 TraesCS1B01G464400 chr5D 88.166 169 20 0 3248 3416 27285934 27286102 5.790000e-48 202.0
40 TraesCS1B01G464400 chr5D 87.647 170 20 1 3248 3416 431989603 431989772 2.690000e-46 196.0
41 TraesCS1B01G464400 chr5D 95.122 123 5 1 2768 2890 522143179 522143058 3.480000e-45 193.0
42 TraesCS1B01G464400 chr5D 87.742 155 13 4 418 571 445026005 445025856 3.510000e-40 176.0
43 TraesCS1B01G464400 chr5D 85.987 157 18 2 415 571 510552650 510552802 7.590000e-37 165.0
44 TraesCS1B01G464400 chr5D 80.851 188 14 7 378 561 27280115 27280284 9.960000e-26 128.0
45 TraesCS1B01G464400 chr4D 87.825 616 46 15 1018 1616 85852684 85852081 0.000000e+00 695.0
46 TraesCS1B01G464400 chr4D 91.373 255 19 3 2907 3160 85849692 85849440 2.530000e-91 346.0
47 TraesCS1B01G464400 chr4D 85.567 194 18 3 378 561 85853471 85853278 9.680000e-46 195.0
48 TraesCS1B01G464400 chr2D 87.338 616 50 16 1018 1616 606091321 606090717 0.000000e+00 680.0
49 TraesCS1B01G464400 chr2D 89.565 230 19 4 2542 2769 29094573 29094347 1.550000e-73 287.0
50 TraesCS1B01G464400 chr2D 89.130 230 19 5 2542 2769 606089573 606089348 7.230000e-72 281.0
51 TraesCS1B01G464400 chr2D 80.168 358 39 11 236 561 29097582 29097225 4.410000e-59 239.0
52 TraesCS1B01G464400 chr2D 87.647 170 19 2 3248 3416 29093944 29093776 2.690000e-46 196.0
53 TraesCS1B01G464400 chr6D 86.829 615 54 12 1018 1616 440673450 440674053 0.000000e+00 662.0
54 TraesCS1B01G464400 chr6D 90.000 230 18 4 2542 2769 440676033 440676259 3.340000e-75 292.0
55 TraesCS1B01G464400 chr5A 88.971 544 41 12 709 1234 470930660 470931202 0.000000e+00 654.0
56 TraesCS1B01G464400 chr5A 90.850 459 36 1 2884 3336 675452996 675452538 8.110000e-171 610.0
57 TraesCS1B01G464400 chr5A 88.732 355 30 7 2401 2748 675453346 675452995 3.150000e-115 425.0
58 TraesCS1B01G464400 chr5A 89.157 249 24 3 1940 2186 13087092 13086845 1.190000e-79 307.0
59 TraesCS1B01G464400 chr5A 91.034 145 13 0 3272 3416 675452538 675452394 2.690000e-46 196.0
60 TraesCS1B01G464400 chr7B 82.955 792 59 30 585 1338 228800314 228801067 0.000000e+00 645.0
61 TraesCS1B01G464400 chr7B 87.748 555 48 13 700 1237 593348803 593348252 6.230000e-177 630.0
62 TraesCS1B01G464400 chr7B 89.606 279 26 3 2883 3160 228803880 228804156 5.430000e-93 351.0
63 TraesCS1B01G464400 chr7B 94.574 129 6 1 2757 2884 746436647 746436775 7.490000e-47 198.0
64 TraesCS1B01G464400 chr3A 88.483 547 44 12 709 1237 662598183 662597638 0.000000e+00 643.0
65 TraesCS1B01G464400 chr3A 90.030 331 19 3 1616 1946 703814602 703814918 1.900000e-112 416.0
66 TraesCS1B01G464400 chr3A 96.875 128 3 1 2765 2891 10694045 10694172 2.670000e-51 213.0
67 TraesCS1B01G464400 chr3A 87.821 156 15 1 415 570 44579420 44579571 2.710000e-41 180.0
68 TraesCS1B01G464400 chr5B 91.068 459 35 1 2884 3336 691747114 691746656 1.740000e-172 616.0
69 TraesCS1B01G464400 chr5B 89.625 347 26 7 2409 2748 691747456 691747113 1.890000e-117 433.0
70 TraesCS1B01G464400 chr5B 91.034 145 13 0 3272 3416 691746656 691746512 2.690000e-46 196.0
71 TraesCS1B01G464400 chr7D 90.937 331 16 3 1616 1946 449503128 449502812 1.890000e-117 433.0
72 TraesCS1B01G464400 chr7D 90.634 331 16 4 1616 1946 621797720 621798035 3.150000e-115 425.0
73 TraesCS1B01G464400 chr7D 89.200 250 24 3 1939 2186 449502070 449501822 3.310000e-80 309.0
74 TraesCS1B01G464400 chr3D 90.937 331 15 4 1616 1946 583596681 583596996 6.780000e-117 431.0
75 TraesCS1B01G464400 chr3D 83.030 330 48 8 248 571 577282542 577282215 3.340000e-75 292.0
76 TraesCS1B01G464400 chr3D 85.946 185 16 7 236 417 614101835 614101658 4.510000e-44 189.0
77 TraesCS1B01G464400 chrUn 90.332 331 18 3 1616 1946 314367953 314368269 4.080000e-114 422.0
78 TraesCS1B01G464400 chrUn 90.332 331 18 3 1616 1946 344422595 344422911 4.080000e-114 422.0
79 TraesCS1B01G464400 chrUn 90.332 331 18 3 1616 1946 455430122 455430438 4.080000e-114 422.0
80 TraesCS1B01G464400 chrUn 89.960 249 22 2 1940 2186 284056285 284056038 5.510000e-83 318.0
81 TraesCS1B01G464400 chrUn 89.960 249 22 2 1940 2186 284069003 284069250 5.510000e-83 318.0
82 TraesCS1B01G464400 chrUn 89.960 249 22 2 1940 2186 289949403 289949156 5.510000e-83 318.0
83 TraesCS1B01G464400 chrUn 89.960 249 22 2 1940 2186 289969340 289969587 5.510000e-83 318.0
84 TraesCS1B01G464400 chrUn 89.960 249 22 2 1940 2186 299609268 299609515 5.510000e-83 318.0
85 TraesCS1B01G464400 chr4B 84.880 291 35 3 2265 2551 650584101 650584386 5.590000e-73 285.0
86 TraesCS1B01G464400 chr4B 96.774 124 4 0 2764 2887 19669920 19669797 1.240000e-49 207.0
87 TraesCS1B01G464400 chr4B 95.968 124 4 1 2764 2887 19724585 19724463 2.080000e-47 200.0
88 TraesCS1B01G464400 chr6A 96.639 119 4 0 2766 2884 30033790 30033672 7.490000e-47 198.0
89 TraesCS1B01G464400 chr1A 88.608 158 18 0 2401 2558 249377190 249377347 3.480000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G464400 chr1B 675899550 675902969 3419 False 6316.000000 6316 100.000000 1 3420 1 chr1B.!!$F1 3419
1 TraesCS1B01G464400 chr1B 593786346 593787298 952 True 421.666667 627 90.704667 2401 3416 3 chr1B.!!$R1 1015
2 TraesCS1B01G464400 chr2B 100100822 100102028 1206 True 528.000000 649 89.377500 700 1929 2 chr2B.!!$R1 1229
3 TraesCS1B01G464400 chr2B 392005701 392006941 1240 False 526.000000 645 88.749500 666 1929 2 chr2B.!!$F3 1263
4 TraesCS1B01G464400 chr2B 134340428 134342039 1611 False 466.800000 1068 87.094333 183 1616 3 chr2B.!!$F2 1433
5 TraesCS1B01G464400 chr4A 742008389 742008942 553 True 649.000000 649 88.288000 700 1237 1 chr4A.!!$R1 537
6 TraesCS1B01G464400 chr4A 658380830 658382135 1305 False 622.000000 1014 86.398000 378 1616 2 chr4A.!!$F1 1238
7 TraesCS1B01G464400 chr7A 617598416 617599466 1050 False 714.500000 996 92.214000 948 1946 2 chr7A.!!$F2 998
8 TraesCS1B01G464400 chr7A 41463812 41465567 1755 True 558.333333 968 91.740333 758 1946 3 chr7A.!!$R3 1188
9 TraesCS1B01G464400 chr7A 658271300 658274368 3068 False 260.666667 346 86.189000 248 3416 3 chr7A.!!$F3 3168
10 TraesCS1B01G464400 chr2A 756524383 756525433 1050 False 706.000000 985 91.914500 948 1946 2 chr2A.!!$F2 998
11 TraesCS1B01G464400 chr3B 60389028 60389610 582 False 760.000000 760 90.290000 2188 2769 1 chr3B.!!$F2 581
12 TraesCS1B01G464400 chr3B 132084187 132085000 813 False 521.500000 623 89.807500 2401 3340 2 chr3B.!!$F3 939
13 TraesCS1B01G464400 chr5D 27280115 27281466 1351 False 426.500000 725 84.779000 378 1616 2 chr5D.!!$F2 1238
14 TraesCS1B01G464400 chr5D 431988975 431989772 797 False 281.666667 351 89.216667 2542 3416 3 chr5D.!!$F4 874
15 TraesCS1B01G464400 chr5D 445023664 445026005 2341 True 248.000000 320 89.032500 418 2186 2 chr5D.!!$R2 1768
16 TraesCS1B01G464400 chr4D 85849440 85853471 4031 True 412.000000 695 88.255000 378 3160 3 chr4D.!!$R1 2782
17 TraesCS1B01G464400 chr2D 606089348 606091321 1973 True 480.500000 680 88.234000 1018 2769 2 chr2D.!!$R2 1751
18 TraesCS1B01G464400 chr2D 29093776 29097582 3806 True 240.666667 287 85.793333 236 3416 3 chr2D.!!$R1 3180
19 TraesCS1B01G464400 chr6D 440673450 440676259 2809 False 477.000000 662 88.414500 1018 2769 2 chr6D.!!$F1 1751
20 TraesCS1B01G464400 chr5A 470930660 470931202 542 False 654.000000 654 88.971000 709 1234 1 chr5A.!!$F1 525
21 TraesCS1B01G464400 chr5A 675452394 675453346 952 True 410.333333 610 90.205333 2401 3416 3 chr5A.!!$R2 1015
22 TraesCS1B01G464400 chr7B 593348252 593348803 551 True 630.000000 630 87.748000 700 1237 1 chr7B.!!$R1 537
23 TraesCS1B01G464400 chr7B 228800314 228804156 3842 False 498.000000 645 86.280500 585 3160 2 chr7B.!!$F2 2575
24 TraesCS1B01G464400 chr3A 662597638 662598183 545 True 643.000000 643 88.483000 709 1237 1 chr3A.!!$R1 528
25 TraesCS1B01G464400 chr5B 691746512 691747456 944 True 415.000000 616 90.575667 2409 3416 3 chr5B.!!$R1 1007
26 TraesCS1B01G464400 chr7D 449501822 449503128 1306 True 371.000000 433 90.068500 1616 2186 2 chr7D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.035458 CTGGGGACTGTGACTGGAAC 59.965 60.0 0.00 0.0 0.0 3.62 F
2087 3906 0.034670 AGGAGAGGCTGGCATTTGAC 60.035 55.0 3.38 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 3912 0.027586 GTGAACGCACACACAGAACC 59.972 55.000 7.53 0.0 44.51 3.62 R
3050 6300 1.131126 GGCCATGATCAACGAACACAG 59.869 52.381 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.573664 ACAAGTGCAAATAACTAATGCTCA 57.426 33.333 0.00 0.00 40.66 4.26
26 27 6.980593 ACAAGTGCAAATAACTAATGCTCAA 58.019 32.000 0.00 0.00 40.66 3.02
27 28 7.086376 ACAAGTGCAAATAACTAATGCTCAAG 58.914 34.615 0.00 0.00 40.66 3.02
28 29 6.199937 AGTGCAAATAACTAATGCTCAAGG 57.800 37.500 0.00 0.00 40.66 3.61
29 30 5.711976 AGTGCAAATAACTAATGCTCAAGGT 59.288 36.000 0.00 0.00 40.66 3.50
30 31 6.884295 AGTGCAAATAACTAATGCTCAAGGTA 59.116 34.615 0.00 0.00 40.66 3.08
31 32 7.066284 AGTGCAAATAACTAATGCTCAAGGTAG 59.934 37.037 0.00 0.00 40.66 3.18
32 33 6.884295 TGCAAATAACTAATGCTCAAGGTAGT 59.116 34.615 0.00 0.00 40.66 2.73
33 34 8.044309 TGCAAATAACTAATGCTCAAGGTAGTA 58.956 33.333 0.00 0.00 40.66 1.82
34 35 8.552034 GCAAATAACTAATGCTCAAGGTAGTAG 58.448 37.037 0.00 0.00 37.12 2.57
35 36 9.817809 CAAATAACTAATGCTCAAGGTAGTAGA 57.182 33.333 0.00 0.00 33.60 2.59
41 42 9.809395 ACTAATGCTCAAGGTAGTAGATATACA 57.191 33.333 0.00 0.00 33.60 2.29
44 45 8.713708 ATGCTCAAGGTAGTAGATATACAAGT 57.286 34.615 0.00 0.00 0.00 3.16
45 46 8.534954 TGCTCAAGGTAGTAGATATACAAGTT 57.465 34.615 0.00 0.00 0.00 2.66
46 47 8.414003 TGCTCAAGGTAGTAGATATACAAGTTG 58.586 37.037 0.00 0.00 0.00 3.16
47 48 7.382759 GCTCAAGGTAGTAGATATACAAGTTGC 59.617 40.741 1.81 0.00 0.00 4.17
48 49 7.423199 TCAAGGTAGTAGATATACAAGTTGCG 58.577 38.462 1.81 0.00 0.00 4.85
49 50 6.956202 AGGTAGTAGATATACAAGTTGCGT 57.044 37.500 1.81 0.00 0.00 5.24
50 51 6.736123 AGGTAGTAGATATACAAGTTGCGTG 58.264 40.000 1.81 0.00 0.00 5.34
51 52 6.544931 AGGTAGTAGATATACAAGTTGCGTGA 59.455 38.462 1.81 0.00 0.00 4.35
52 53 6.636044 GGTAGTAGATATACAAGTTGCGTGAC 59.364 42.308 1.81 0.00 0.00 3.67
53 54 6.452494 AGTAGATATACAAGTTGCGTGACT 57.548 37.500 1.81 0.65 0.00 3.41
54 55 7.563888 AGTAGATATACAAGTTGCGTGACTA 57.436 36.000 1.81 0.00 0.00 2.59
55 56 7.640852 AGTAGATATACAAGTTGCGTGACTAG 58.359 38.462 1.81 0.00 0.00 2.57
56 57 6.452494 AGATATACAAGTTGCGTGACTAGT 57.548 37.500 1.81 0.00 0.00 2.57
57 58 6.496571 AGATATACAAGTTGCGTGACTAGTC 58.503 40.000 16.32 16.32 0.00 2.59
58 59 2.882927 ACAAGTTGCGTGACTAGTCA 57.117 45.000 21.74 21.74 37.24 3.41
79 80 3.193157 CGTGTACGTTGCTACTACAGT 57.807 47.619 0.00 0.00 34.11 3.55
80 81 4.326413 CGTGTACGTTGCTACTACAGTA 57.674 45.455 0.00 0.00 34.11 2.74
81 82 4.084507 CGTGTACGTTGCTACTACAGTAC 58.915 47.826 0.00 8.31 36.11 2.73
82 83 4.406943 GTGTACGTTGCTACTACAGTACC 58.593 47.826 0.00 1.87 35.07 3.34
83 84 4.154918 GTGTACGTTGCTACTACAGTACCT 59.845 45.833 0.00 0.00 35.07 3.08
84 85 4.761739 TGTACGTTGCTACTACAGTACCTT 59.238 41.667 0.00 0.00 35.07 3.50
85 86 4.861102 ACGTTGCTACTACAGTACCTTT 57.139 40.909 0.00 0.00 0.00 3.11
86 87 5.205759 ACGTTGCTACTACAGTACCTTTT 57.794 39.130 0.00 0.00 0.00 2.27
87 88 5.604565 ACGTTGCTACTACAGTACCTTTTT 58.395 37.500 0.00 0.00 0.00 1.94
88 89 5.693555 ACGTTGCTACTACAGTACCTTTTTC 59.306 40.000 0.00 0.00 0.00 2.29
89 90 5.924825 CGTTGCTACTACAGTACCTTTTTCT 59.075 40.000 0.00 0.00 0.00 2.52
90 91 7.086376 CGTTGCTACTACAGTACCTTTTTCTA 58.914 38.462 0.00 0.00 0.00 2.10
91 92 7.596248 CGTTGCTACTACAGTACCTTTTTCTAA 59.404 37.037 0.00 0.00 0.00 2.10
92 93 8.706936 GTTGCTACTACAGTACCTTTTTCTAAC 58.293 37.037 0.00 0.00 0.00 2.34
93 94 7.381323 TGCTACTACAGTACCTTTTTCTAACC 58.619 38.462 0.00 0.00 0.00 2.85
94 95 7.015487 TGCTACTACAGTACCTTTTTCTAACCA 59.985 37.037 0.00 0.00 0.00 3.67
95 96 7.874528 GCTACTACAGTACCTTTTTCTAACCAA 59.125 37.037 0.00 0.00 0.00 3.67
96 97 9.939802 CTACTACAGTACCTTTTTCTAACCAAT 57.060 33.333 0.00 0.00 0.00 3.16
101 102 9.668497 ACAGTACCTTTTTCTAACCAATATCTC 57.332 33.333 0.00 0.00 0.00 2.75
102 103 9.892130 CAGTACCTTTTTCTAACCAATATCTCT 57.108 33.333 0.00 0.00 0.00 3.10
106 107 7.982354 ACCTTTTTCTAACCAATATCTCTCTCG 59.018 37.037 0.00 0.00 0.00 4.04
107 108 7.042389 CCTTTTTCTAACCAATATCTCTCTCGC 60.042 40.741 0.00 0.00 0.00 5.03
108 109 5.455056 TTCTAACCAATATCTCTCTCGCC 57.545 43.478 0.00 0.00 0.00 5.54
109 110 2.802787 AACCAATATCTCTCTCGCCG 57.197 50.000 0.00 0.00 0.00 6.46
110 111 1.693627 ACCAATATCTCTCTCGCCGT 58.306 50.000 0.00 0.00 0.00 5.68
111 112 2.032620 ACCAATATCTCTCTCGCCGTT 58.967 47.619 0.00 0.00 0.00 4.44
112 113 3.220110 ACCAATATCTCTCTCGCCGTTA 58.780 45.455 0.00 0.00 0.00 3.18
113 114 3.635373 ACCAATATCTCTCTCGCCGTTAA 59.365 43.478 0.00 0.00 0.00 2.01
114 115 3.982058 CCAATATCTCTCTCGCCGTTAAC 59.018 47.826 0.00 0.00 0.00 2.01
115 116 4.261656 CCAATATCTCTCTCGCCGTTAACT 60.262 45.833 3.71 0.00 0.00 2.24
116 117 2.853731 ATCTCTCTCGCCGTTAACTG 57.146 50.000 3.71 0.00 0.00 3.16
117 118 0.809385 TCTCTCTCGCCGTTAACTGG 59.191 55.000 3.71 7.95 0.00 4.00
118 119 0.179134 CTCTCTCGCCGTTAACTGGG 60.179 60.000 15.23 11.85 0.00 4.45
119 120 1.153628 CTCTCGCCGTTAACTGGGG 60.154 63.158 19.98 19.98 40.58 4.96
120 121 1.601419 CTCTCGCCGTTAACTGGGGA 61.601 60.000 24.00 24.00 45.13 4.81
121 122 1.447314 CTCGCCGTTAACTGGGGAC 60.447 63.158 22.73 7.05 42.80 4.46
122 123 1.885163 CTCGCCGTTAACTGGGGACT 61.885 60.000 22.73 0.00 42.80 3.85
123 124 1.740296 CGCCGTTAACTGGGGACTG 60.740 63.158 20.85 0.00 41.69 3.51
124 125 1.373812 GCCGTTAACTGGGGACTGT 59.626 57.895 15.23 0.00 45.29 3.55
125 126 0.953960 GCCGTTAACTGGGGACTGTG 60.954 60.000 15.23 0.00 42.21 3.66
126 127 0.682852 CCGTTAACTGGGGACTGTGA 59.317 55.000 3.71 0.00 42.21 3.58
127 128 1.607251 CCGTTAACTGGGGACTGTGAC 60.607 57.143 3.71 0.00 42.21 3.67
128 129 1.343465 CGTTAACTGGGGACTGTGACT 59.657 52.381 3.71 0.00 42.21 3.41
129 130 2.767505 GTTAACTGGGGACTGTGACTG 58.232 52.381 0.00 0.00 42.21 3.51
130 131 1.348064 TAACTGGGGACTGTGACTGG 58.652 55.000 0.00 0.00 42.21 4.00
131 132 0.399949 AACTGGGGACTGTGACTGGA 60.400 55.000 0.00 0.00 42.21 3.86
132 133 0.399949 ACTGGGGACTGTGACTGGAA 60.400 55.000 0.00 0.00 41.39 3.53
133 134 0.035458 CTGGGGACTGTGACTGGAAC 59.965 60.000 0.00 0.00 0.00 3.62
134 135 1.375326 GGGGACTGTGACTGGAACC 59.625 63.158 0.00 0.00 0.00 3.62
135 136 1.128188 GGGGACTGTGACTGGAACCT 61.128 60.000 0.00 0.00 0.00 3.50
136 137 0.035458 GGGACTGTGACTGGAACCTG 59.965 60.000 0.00 0.00 0.00 4.00
137 138 0.035458 GGACTGTGACTGGAACCTGG 59.965 60.000 0.00 0.00 0.00 4.45
138 139 1.048601 GACTGTGACTGGAACCTGGA 58.951 55.000 0.00 0.00 0.00 3.86
139 140 1.416401 GACTGTGACTGGAACCTGGAA 59.584 52.381 0.00 0.00 0.00 3.53
140 141 1.843851 ACTGTGACTGGAACCTGGAAA 59.156 47.619 0.00 0.00 0.00 3.13
141 142 2.443255 ACTGTGACTGGAACCTGGAAAT 59.557 45.455 0.00 0.00 0.00 2.17
142 143 3.650942 ACTGTGACTGGAACCTGGAAATA 59.349 43.478 0.00 0.00 0.00 1.40
143 144 4.104102 ACTGTGACTGGAACCTGGAAATAA 59.896 41.667 0.00 0.00 0.00 1.40
144 145 4.651778 TGTGACTGGAACCTGGAAATAAG 58.348 43.478 0.00 0.00 0.00 1.73
145 146 4.349636 TGTGACTGGAACCTGGAAATAAGA 59.650 41.667 0.00 0.00 0.00 2.10
146 147 4.695928 GTGACTGGAACCTGGAAATAAGAC 59.304 45.833 0.00 0.00 0.00 3.01
147 148 4.262617 GACTGGAACCTGGAAATAAGACC 58.737 47.826 0.00 0.00 0.00 3.85
148 149 3.655777 ACTGGAACCTGGAAATAAGACCA 59.344 43.478 0.00 0.00 34.81 4.02
149 150 4.292306 ACTGGAACCTGGAAATAAGACCAT 59.708 41.667 0.00 0.00 35.54 3.55
150 151 4.855340 TGGAACCTGGAAATAAGACCATC 58.145 43.478 0.00 0.00 35.54 3.51
151 152 4.207955 GGAACCTGGAAATAAGACCATCC 58.792 47.826 0.00 0.00 35.54 3.51
152 153 3.953542 ACCTGGAAATAAGACCATCCC 57.046 47.619 0.00 0.00 35.54 3.85
153 154 3.197983 ACCTGGAAATAAGACCATCCCA 58.802 45.455 0.00 0.00 35.54 4.37
154 155 3.596046 ACCTGGAAATAAGACCATCCCAA 59.404 43.478 0.00 0.00 35.54 4.12
155 156 4.210331 CCTGGAAATAAGACCATCCCAAG 58.790 47.826 0.00 0.00 35.54 3.61
156 157 4.325344 CCTGGAAATAAGACCATCCCAAGT 60.325 45.833 0.00 0.00 35.54 3.16
157 158 4.855340 TGGAAATAAGACCATCCCAAGTC 58.145 43.478 0.00 0.00 0.00 3.01
158 159 4.207955 GGAAATAAGACCATCCCAAGTCC 58.792 47.826 0.00 0.00 33.29 3.85
159 160 4.325030 GGAAATAAGACCATCCCAAGTCCA 60.325 45.833 0.00 0.00 33.29 4.02
160 161 5.449553 GAAATAAGACCATCCCAAGTCCAT 58.550 41.667 0.00 0.00 33.29 3.41
161 162 5.472301 AATAAGACCATCCCAAGTCCATT 57.528 39.130 0.00 0.00 33.29 3.16
162 163 3.833559 AAGACCATCCCAAGTCCATTT 57.166 42.857 0.00 0.00 33.29 2.32
163 164 3.372440 AGACCATCCCAAGTCCATTTC 57.628 47.619 0.00 0.00 33.29 2.17
164 165 2.922283 AGACCATCCCAAGTCCATTTCT 59.078 45.455 0.00 0.00 33.29 2.52
165 166 3.334881 AGACCATCCCAAGTCCATTTCTT 59.665 43.478 0.00 0.00 33.29 2.52
166 167 3.696548 GACCATCCCAAGTCCATTTCTTC 59.303 47.826 0.00 0.00 0.00 2.87
167 168 3.334881 ACCATCCCAAGTCCATTTCTTCT 59.665 43.478 0.00 0.00 0.00 2.85
168 169 4.202716 ACCATCCCAAGTCCATTTCTTCTT 60.203 41.667 0.00 0.00 0.00 2.52
169 170 4.400567 CCATCCCAAGTCCATTTCTTCTTC 59.599 45.833 0.00 0.00 0.00 2.87
170 171 5.259632 CATCCCAAGTCCATTTCTTCTTCT 58.740 41.667 0.00 0.00 0.00 2.85
171 172 5.324832 TCCCAAGTCCATTTCTTCTTCTT 57.675 39.130 0.00 0.00 0.00 2.52
172 173 6.448369 TCCCAAGTCCATTTCTTCTTCTTA 57.552 37.500 0.00 0.00 0.00 2.10
173 174 7.032598 TCCCAAGTCCATTTCTTCTTCTTAT 57.967 36.000 0.00 0.00 0.00 1.73
174 175 7.470192 TCCCAAGTCCATTTCTTCTTCTTATT 58.530 34.615 0.00 0.00 0.00 1.40
175 176 8.611257 TCCCAAGTCCATTTCTTCTTCTTATTA 58.389 33.333 0.00 0.00 0.00 0.98
176 177 9.413734 CCCAAGTCCATTTCTTCTTCTTATTAT 57.586 33.333 0.00 0.00 0.00 1.28
228 229 1.546589 TACGGGCCGTTCATCCACTT 61.547 55.000 38.73 10.55 41.54 3.16
229 230 1.674322 CGGGCCGTTCATCCACTTT 60.674 57.895 19.97 0.00 0.00 2.66
234 235 2.359900 GCCGTTCATCCACTTTGATCT 58.640 47.619 0.00 0.00 0.00 2.75
293 322 3.837399 ACAAAATTAGGGTGGGGCTAA 57.163 42.857 0.00 0.00 0.00 3.09
299 328 5.941146 AATTAGGGTGGGGCTAATCATTA 57.059 39.130 0.00 0.00 0.00 1.90
326 355 5.700722 AAAGGGTAGTTTCGTCCAATTTC 57.299 39.130 0.00 0.00 0.00 2.17
344 373 0.106918 TCAGTCAAGGCCAAACCGTT 60.107 50.000 5.01 0.00 46.52 4.44
345 374 0.310854 CAGTCAAGGCCAAACCGTTC 59.689 55.000 5.01 0.00 46.52 3.95
346 375 0.822121 AGTCAAGGCCAAACCGTTCC 60.822 55.000 5.01 0.00 46.52 3.62
350 379 3.299977 GGCCAAACCGTTCCCACC 61.300 66.667 0.00 0.00 0.00 4.61
352 381 2.518933 CCAAACCGTTCCCACCCT 59.481 61.111 0.00 0.00 0.00 4.34
353 382 1.602605 CCAAACCGTTCCCACCCTC 60.603 63.158 0.00 0.00 0.00 4.30
354 383 1.964373 CAAACCGTTCCCACCCTCG 60.964 63.158 0.00 0.00 0.00 4.63
355 384 3.837570 AAACCGTTCCCACCCTCGC 62.838 63.158 0.00 0.00 0.00 5.03
365 394 2.045242 ACCCTCGCTCTCGCTGTA 60.045 61.111 0.00 0.00 35.26 2.74
396 459 3.775654 CTGGGTCGCTCCTCCACC 61.776 72.222 0.00 0.00 36.25 4.61
401 464 2.599281 TCGCTCCTCCACCGTTCA 60.599 61.111 0.00 0.00 0.00 3.18
403 466 2.047179 GCTCCTCCACCGTTCACC 60.047 66.667 0.00 0.00 0.00 4.02
411 474 3.307480 CCTCCACCGTTCACCTAGAAAAT 60.307 47.826 0.00 0.00 38.13 1.82
414 477 5.134661 TCCACCGTTCACCTAGAAAATTTT 58.865 37.500 2.28 2.28 38.13 1.82
416 479 5.918576 CCACCGTTCACCTAGAAAATTTTTC 59.081 40.000 12.94 12.94 38.13 2.29
446 513 1.153549 CGAAGCAGCAGGGTAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
452 519 2.689034 GCAGGGTAGGACAGGGCT 60.689 66.667 0.00 0.00 0.00 5.19
468 535 3.842923 CTGAGCCGCCGATGACCT 61.843 66.667 0.00 0.00 0.00 3.85
576 724 4.754667 GGTCCCAAGGGCGTCGTC 62.755 72.222 0.00 0.00 34.68 4.20
577 725 4.754667 GTCCCAAGGGCGTCGTCC 62.755 72.222 8.12 8.12 34.68 4.79
615 840 2.029073 CAGTTCAGCGGTCGTGGT 59.971 61.111 0.00 0.00 0.00 4.16
618 843 1.885850 GTTCAGCGGTCGTGGTGTT 60.886 57.895 0.00 0.00 38.47 3.32
641 869 2.188207 GGAGGCGGAGAGAAAGGC 59.812 66.667 0.00 0.00 0.00 4.35
647 875 2.646175 CGGAGAGAAAGGCCACCGA 61.646 63.158 5.01 0.00 42.40 4.69
650 878 0.537188 GAGAGAAAGGCCACCGATGA 59.463 55.000 5.01 0.00 0.00 2.92
834 1109 5.308825 TCTCTTACTTCTTCTTTGCAAGGG 58.691 41.667 8.88 2.01 0.00 3.95
869 1145 5.135508 TGCTCTTCAGTTCTGGTTACTAC 57.864 43.478 0.00 0.00 0.00 2.73
1087 1929 3.476295 TGCAGTTGCTGATTCGATTTC 57.524 42.857 5.62 0.00 42.66 2.17
1106 1958 4.669206 TTCTTTGCTTCCAATGCTTTGA 57.331 36.364 13.58 0.00 34.60 2.69
1194 2051 2.509336 CATGTCGACAGTCGGGGC 60.509 66.667 24.41 13.36 40.88 5.80
1249 2122 2.322355 AGGTGGCGAGATCAATTCTG 57.678 50.000 0.00 0.00 33.74 3.02
1250 2123 1.556911 AGGTGGCGAGATCAATTCTGT 59.443 47.619 0.00 0.00 33.74 3.41
1389 2662 3.788227 AAGTCCATGTTTCTGTGGCTA 57.212 42.857 0.00 0.00 35.43 3.93
1409 2683 0.463654 AATCGGCTTAAGGATGCGCA 60.464 50.000 14.96 14.96 0.00 6.09
1418 2692 1.732941 AAGGATGCGCAAACGACATA 58.267 45.000 17.11 0.00 43.93 2.29
1452 2726 6.925165 GCTTGAAGATTTTGAAGATGAAACCA 59.075 34.615 0.00 0.00 30.12 3.67
1475 2749 3.209410 CCTCAACCTGGTATGCAAGATC 58.791 50.000 0.00 0.00 0.00 2.75
1493 2770 2.455674 TCCTGTCGATTTGGTCACTG 57.544 50.000 0.00 0.00 0.00 3.66
1500 2819 2.993220 TCGATTTGGTCACTGTCAATCG 59.007 45.455 6.31 6.31 0.00 3.34
1512 2831 3.620374 ACTGTCAATCGTGATCTGAATGC 59.380 43.478 0.00 0.00 35.80 3.56
1602 2922 5.080337 AGTAGATCTGAACCTCACTGTTGA 58.920 41.667 5.18 0.00 0.00 3.18
1627 3008 2.041485 TGATCTTTGAATGTCCCTGCCA 59.959 45.455 0.00 0.00 0.00 4.92
1636 3017 1.909700 TGTCCCTGCCATCTTTTGTC 58.090 50.000 0.00 0.00 0.00 3.18
1656 3037 5.601662 TGTCTCACCAATAGTAAGCTATGC 58.398 41.667 0.00 0.00 37.92 3.14
1660 3041 4.350816 TCACCAATAGTAAGCTATGCCCAT 59.649 41.667 0.00 0.00 37.92 4.00
1775 3434 7.255139 GCACCTGATTGAAACTAGTTTGTACTT 60.255 37.037 25.17 0.00 35.78 2.24
1778 3437 8.621286 CCTGATTGAAACTAGTTTGTACTTTGT 58.379 33.333 25.17 0.00 35.78 2.83
1834 3508 2.479837 ACTGACACACCACATTGTACG 58.520 47.619 0.00 0.00 0.00 3.67
1839 3513 4.202131 TGACACACCACATTGTACGTCTTA 60.202 41.667 0.00 0.00 0.00 2.10
1911 3606 2.810439 TGCAAAAGCGCCTACAAAAT 57.190 40.000 2.29 0.00 0.00 1.82
1924 3619 6.037830 GCGCCTACAAAATATAAAAGAGGACA 59.962 38.462 0.00 0.00 0.00 4.02
1942 3637 5.734720 AGGACAGTGATAGTTATGGTGTTG 58.265 41.667 0.00 0.00 0.00 3.33
1946 3641 5.046304 ACAGTGATAGTTATGGTGTTGAGCT 60.046 40.000 0.00 0.00 0.00 4.09
1947 3642 5.521735 CAGTGATAGTTATGGTGTTGAGCTC 59.478 44.000 6.82 6.82 0.00 4.09
1948 3643 4.811557 GTGATAGTTATGGTGTTGAGCTCC 59.188 45.833 12.15 0.00 0.00 4.70
1954 3649 2.768253 TGGTGTTGAGCTCCATGTAG 57.232 50.000 12.15 0.00 35.98 2.74
1959 3654 1.825341 TGAGCTCCATGTAGCGCAT 59.175 52.632 12.55 0.00 45.61 4.73
1963 3658 1.871080 GCTCCATGTAGCGCATTAGT 58.129 50.000 11.47 0.00 35.19 2.24
1964 3659 1.795286 GCTCCATGTAGCGCATTAGTC 59.205 52.381 11.47 0.00 35.19 2.59
1965 3660 2.546795 GCTCCATGTAGCGCATTAGTCT 60.547 50.000 11.47 0.00 35.19 3.24
1966 3661 3.055591 CTCCATGTAGCGCATTAGTCTG 58.944 50.000 11.47 0.00 35.19 3.51
1968 3663 3.132111 TCCATGTAGCGCATTAGTCTGAA 59.868 43.478 11.47 0.00 35.19 3.02
1969 3664 4.060900 CCATGTAGCGCATTAGTCTGAAT 58.939 43.478 11.47 0.00 35.19 2.57
1970 3665 4.084171 CCATGTAGCGCATTAGTCTGAATG 60.084 45.833 11.47 0.00 39.41 2.67
1981 3676 5.772825 TTAGTCTGAATGCAAAACAAGCT 57.227 34.783 0.00 0.00 0.00 3.74
1990 3685 3.122297 TGCAAAACAAGCTGCAATGTAC 58.878 40.909 10.80 0.00 45.25 2.90
1995 3690 2.586425 ACAAGCTGCAATGTACCAACT 58.414 42.857 9.01 0.00 0.00 3.16
1996 3691 2.554032 ACAAGCTGCAATGTACCAACTC 59.446 45.455 9.01 0.00 0.00 3.01
1997 3692 2.816087 CAAGCTGCAATGTACCAACTCT 59.184 45.455 1.02 0.00 0.00 3.24
1998 3693 3.146104 AGCTGCAATGTACCAACTCTT 57.854 42.857 1.02 0.00 0.00 2.85
1999 3694 2.816087 AGCTGCAATGTACCAACTCTTG 59.184 45.455 1.02 0.00 0.00 3.02
2019 3714 8.367911 ACTCTTGTTGACATGTCTTTATCAGTA 58.632 33.333 25.55 0.00 0.00 2.74
2048 3867 4.765273 TGGTACATGTTATTCGTGATGCT 58.235 39.130 2.30 0.00 36.90 3.79
2049 3868 5.908341 TGGTACATGTTATTCGTGATGCTA 58.092 37.500 2.30 0.00 36.90 3.49
2050 3869 6.521162 TGGTACATGTTATTCGTGATGCTAT 58.479 36.000 2.30 0.00 36.90 2.97
2051 3870 6.989759 TGGTACATGTTATTCGTGATGCTATT 59.010 34.615 2.30 0.00 36.90 1.73
2052 3871 7.497579 TGGTACATGTTATTCGTGATGCTATTT 59.502 33.333 2.30 0.00 36.90 1.40
2053 3872 8.342634 GGTACATGTTATTCGTGATGCTATTTT 58.657 33.333 2.30 0.00 36.90 1.82
2054 3873 9.716507 GTACATGTTATTCGTGATGCTATTTTT 57.283 29.630 2.30 0.00 36.90 1.94
2075 3894 6.824305 TTTTCTTATTTTCTGCAGGAGAGG 57.176 37.500 15.13 0.00 30.18 3.69
2076 3895 3.878778 TCTTATTTTCTGCAGGAGAGGC 58.121 45.455 15.13 0.00 30.18 4.70
2077 3896 3.521126 TCTTATTTTCTGCAGGAGAGGCT 59.479 43.478 15.13 0.00 30.18 4.58
2078 3897 2.125773 ATTTTCTGCAGGAGAGGCTG 57.874 50.000 15.13 0.00 30.18 4.85
2079 3898 0.037303 TTTTCTGCAGGAGAGGCTGG 59.963 55.000 15.13 0.00 30.18 4.85
2080 3899 2.475371 TTTCTGCAGGAGAGGCTGGC 62.475 60.000 15.13 0.00 30.18 4.85
2081 3900 3.714001 CTGCAGGAGAGGCTGGCA 61.714 66.667 5.57 0.00 0.00 4.92
2082 3901 3.013327 TGCAGGAGAGGCTGGCAT 61.013 61.111 3.38 0.00 0.00 4.40
2083 3902 2.274760 GCAGGAGAGGCTGGCATT 59.725 61.111 3.38 0.00 0.00 3.56
2084 3903 1.379576 GCAGGAGAGGCTGGCATTT 60.380 57.895 3.38 0.00 0.00 2.32
2085 3904 1.664321 GCAGGAGAGGCTGGCATTTG 61.664 60.000 3.38 0.00 0.00 2.32
2086 3905 0.034767 CAGGAGAGGCTGGCATTTGA 60.035 55.000 3.38 0.00 0.00 2.69
2087 3906 0.034670 AGGAGAGGCTGGCATTTGAC 60.035 55.000 3.38 0.00 0.00 3.18
2088 3907 0.322816 GGAGAGGCTGGCATTTGACA 60.323 55.000 3.38 0.00 0.00 3.58
2089 3908 1.538047 GAGAGGCTGGCATTTGACAA 58.462 50.000 3.38 0.00 29.15 3.18
2090 3909 2.097825 GAGAGGCTGGCATTTGACAAT 58.902 47.619 3.38 0.00 29.15 2.71
2091 3910 3.282021 GAGAGGCTGGCATTTGACAATA 58.718 45.455 3.38 0.00 29.15 1.90
2092 3911 3.019564 AGAGGCTGGCATTTGACAATAC 58.980 45.455 3.38 0.00 29.15 1.89
2093 3912 1.745087 AGGCTGGCATTTGACAATACG 59.255 47.619 3.38 0.00 29.15 3.06
2094 3913 1.202290 GGCTGGCATTTGACAATACGG 60.202 52.381 0.00 0.00 29.15 4.02
2095 3914 1.472480 GCTGGCATTTGACAATACGGT 59.528 47.619 0.00 0.00 29.15 4.83
2096 3915 2.094752 GCTGGCATTTGACAATACGGTT 60.095 45.455 0.00 0.00 29.15 4.44
2097 3916 3.758300 CTGGCATTTGACAATACGGTTC 58.242 45.455 0.00 0.00 29.15 3.62
2098 3917 3.417101 TGGCATTTGACAATACGGTTCT 58.583 40.909 0.00 0.00 0.00 3.01
2099 3918 3.190327 TGGCATTTGACAATACGGTTCTG 59.810 43.478 0.00 0.00 0.00 3.02
2100 3919 3.190535 GGCATTTGACAATACGGTTCTGT 59.809 43.478 0.00 0.00 0.00 3.41
2101 3920 4.158384 GCATTTGACAATACGGTTCTGTG 58.842 43.478 0.15 0.00 0.00 3.66
2102 3921 4.320202 GCATTTGACAATACGGTTCTGTGT 60.320 41.667 0.15 0.00 0.00 3.72
2103 3922 4.804608 TTTGACAATACGGTTCTGTGTG 57.195 40.909 0.15 0.00 0.00 3.82
2104 3923 3.462483 TGACAATACGGTTCTGTGTGT 57.538 42.857 0.15 3.67 0.00 3.72
2105 3924 3.127589 TGACAATACGGTTCTGTGTGTG 58.872 45.455 7.37 0.82 0.00 3.82
2106 3925 1.871039 ACAATACGGTTCTGTGTGTGC 59.129 47.619 0.00 0.00 0.00 4.57
2107 3926 1.136363 CAATACGGTTCTGTGTGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
2108 3927 0.032952 ATACGGTTCTGTGTGTGCGT 59.967 50.000 0.00 0.00 0.00 5.24
2109 3928 0.179105 TACGGTTCTGTGTGTGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
2110 3929 1.275657 CGGTTCTGTGTGTGCGTTC 59.724 57.895 0.00 0.00 0.00 3.95
2111 3930 1.425267 CGGTTCTGTGTGTGCGTTCA 61.425 55.000 0.00 0.00 0.00 3.18
2112 3931 0.027586 GGTTCTGTGTGTGCGTTCAC 59.972 55.000 5.43 5.43 43.40 3.18
2113 3932 0.315059 GTTCTGTGTGTGCGTTCACG 60.315 55.000 0.00 0.00 46.01 4.35
2114 3933 1.425267 TTCTGTGTGTGCGTTCACGG 61.425 55.000 0.81 7.25 46.01 4.94
2115 3934 3.506312 CTGTGTGTGCGTTCACGGC 62.506 63.158 0.81 0.00 46.01 5.68
2116 3935 3.269347 GTGTGTGCGTTCACGGCT 61.269 61.111 0.81 0.00 46.01 5.52
2117 3936 3.268603 TGTGTGCGTTCACGGCTG 61.269 61.111 0.81 0.00 46.01 4.85
2118 3937 4.666532 GTGTGCGTTCACGGCTGC 62.667 66.667 0.81 0.00 46.01 5.25
2119 3938 4.908687 TGTGCGTTCACGGCTGCT 62.909 61.111 0.00 0.00 46.01 4.24
2120 3939 4.374702 GTGCGTTCACGGCTGCTG 62.375 66.667 6.98 6.98 40.23 4.41
2135 3954 4.709840 CTGCTGCAGCCTGTAGTT 57.290 55.556 34.64 0.00 41.18 2.24
2136 3955 2.938354 CTGCTGCAGCCTGTAGTTT 58.062 52.632 34.64 0.00 41.18 2.66
2137 3956 1.242076 CTGCTGCAGCCTGTAGTTTT 58.758 50.000 34.64 0.00 41.18 2.43
2138 3957 1.610522 CTGCTGCAGCCTGTAGTTTTT 59.389 47.619 34.64 0.00 41.18 1.94
2139 3958 1.608590 TGCTGCAGCCTGTAGTTTTTC 59.391 47.619 34.64 4.17 41.18 2.29
2140 3959 1.882623 GCTGCAGCCTGTAGTTTTTCT 59.117 47.619 28.76 0.00 32.42 2.52
2141 3960 2.294512 GCTGCAGCCTGTAGTTTTTCTT 59.705 45.455 28.76 0.00 32.42 2.52
2142 3961 3.854784 GCTGCAGCCTGTAGTTTTTCTTG 60.855 47.826 28.76 0.00 32.42 3.02
2143 3962 3.287222 TGCAGCCTGTAGTTTTTCTTGT 58.713 40.909 0.00 0.00 0.00 3.16
2144 3963 3.066621 TGCAGCCTGTAGTTTTTCTTGTG 59.933 43.478 0.00 0.00 0.00 3.33
2145 3964 3.550842 GCAGCCTGTAGTTTTTCTTGTGG 60.551 47.826 0.00 0.00 0.00 4.17
2146 3965 3.004734 CAGCCTGTAGTTTTTCTTGTGGG 59.995 47.826 0.00 0.00 0.00 4.61
2147 3966 2.296190 GCCTGTAGTTTTTCTTGTGGGG 59.704 50.000 0.00 0.00 0.00 4.96
2148 3967 3.562182 CCTGTAGTTTTTCTTGTGGGGT 58.438 45.455 0.00 0.00 0.00 4.95
2149 3968 3.568430 CCTGTAGTTTTTCTTGTGGGGTC 59.432 47.826 0.00 0.00 0.00 4.46
2150 3969 3.207778 TGTAGTTTTTCTTGTGGGGTCG 58.792 45.455 0.00 0.00 0.00 4.79
2151 3970 2.721425 AGTTTTTCTTGTGGGGTCGA 57.279 45.000 0.00 0.00 0.00 4.20
2152 3971 2.294979 AGTTTTTCTTGTGGGGTCGAC 58.705 47.619 7.13 7.13 0.00 4.20
2153 3972 1.335810 GTTTTTCTTGTGGGGTCGACC 59.664 52.381 27.04 27.04 39.11 4.79
2154 3973 0.533308 TTTTCTTGTGGGGTCGACCG 60.533 55.000 27.68 13.24 41.60 4.79
2155 3974 1.688269 TTTCTTGTGGGGTCGACCGT 61.688 55.000 27.68 0.00 41.60 4.83
2156 3975 0.827089 TTCTTGTGGGGTCGACCGTA 60.827 55.000 27.68 16.36 41.60 4.02
2157 3976 1.214589 CTTGTGGGGTCGACCGTAG 59.785 63.158 27.68 15.36 41.60 3.51
2158 3977 1.530013 CTTGTGGGGTCGACCGTAGT 61.530 60.000 27.68 0.00 41.60 2.73
2159 3978 0.251121 TTGTGGGGTCGACCGTAGTA 60.251 55.000 27.68 10.61 41.60 1.82
2160 3979 0.251121 TGTGGGGTCGACCGTAGTAA 60.251 55.000 27.68 8.73 41.60 2.24
2161 3980 1.106285 GTGGGGTCGACCGTAGTAAT 58.894 55.000 27.68 0.00 41.60 1.89
2162 3981 1.066152 GTGGGGTCGACCGTAGTAATC 59.934 57.143 27.68 11.35 41.60 1.75
2163 3982 0.670706 GGGGTCGACCGTAGTAATCC 59.329 60.000 27.68 16.58 41.60 3.01
2164 3983 1.392589 GGGTCGACCGTAGTAATCCA 58.607 55.000 27.68 0.00 36.71 3.41
2165 3984 1.959282 GGGTCGACCGTAGTAATCCAT 59.041 52.381 27.68 0.00 36.71 3.41
2172 3991 4.023450 CGACCGTAGTAATCCATCAAGCTA 60.023 45.833 0.00 0.00 0.00 3.32
2181 4000 3.843893 TCCATCAAGCTAGCTGCATTA 57.156 42.857 20.16 2.51 45.94 1.90
2182 4001 4.362470 TCCATCAAGCTAGCTGCATTAT 57.638 40.909 20.16 4.92 45.94 1.28
2184 4003 4.517832 TCCATCAAGCTAGCTGCATTATTG 59.482 41.667 20.16 11.06 45.94 1.90
2186 4005 5.009310 CCATCAAGCTAGCTGCATTATTGAA 59.991 40.000 20.16 1.91 45.94 2.69
2221 4040 5.563475 CGACTGAACCTTTCAAAGATTGCAT 60.563 40.000 0.00 0.00 39.58 3.96
2241 4060 5.709631 TGCATTAGTTGGTTTGCTGAATCTA 59.290 36.000 0.00 0.00 36.10 1.98
2284 4148 6.042093 TGGTAGATGATAGGTTGACTTGATCC 59.958 42.308 0.00 0.00 0.00 3.36
2300 4164 6.894828 ACTTGATCCGTTTGTGTATTTGTAC 58.105 36.000 0.00 0.00 0.00 2.90
2344 4403 4.396166 GCATACACTTGGTTTGCTGTAGAT 59.604 41.667 3.22 0.00 46.81 1.98
2407 4516 7.849804 TCTCCTTTAATCAAGTATCTTGTGC 57.150 36.000 8.93 0.00 0.00 4.57
2478 4624 4.227134 CGGAGCCGGATGACCCAG 62.227 72.222 5.05 0.00 35.56 4.45
2515 4676 3.136123 GCGCAGGATGGTGCATGT 61.136 61.111 0.30 0.00 44.21 3.21
2536 5187 7.899861 CATGTCGTCATCATCCATGTTGGATT 61.900 42.308 6.30 0.00 42.34 3.01
2571 5728 1.078778 ACCACACGTTGTCACAGCA 60.079 52.632 0.00 0.00 0.00 4.41
2604 5764 0.393673 TGGTATGGTTGATGGCACCG 60.394 55.000 0.00 0.00 0.00 4.94
2616 5779 4.344865 GCACCGGCCCTCCTTTCA 62.345 66.667 0.00 0.00 0.00 2.69
2633 5796 1.639722 TCAAAGATGGAGGTCACGGA 58.360 50.000 0.00 0.00 0.00 4.69
2641 5805 0.321653 GGAGGTCACGGATTTGCAGT 60.322 55.000 0.00 0.00 0.00 4.40
2644 5808 1.210155 GTCACGGATTTGCAGTGGC 59.790 57.895 3.50 0.00 42.10 5.01
2751 5916 4.084537 CGCTCCATCCGTTCACAAATATAC 60.085 45.833 0.00 0.00 0.00 1.47
2774 5957 7.657023 ACGATGTTTCTAACTTATACTCCCT 57.343 36.000 0.00 0.00 0.00 4.20
2775 5958 7.714703 ACGATGTTTCTAACTTATACTCCCTC 58.285 38.462 0.00 0.00 0.00 4.30
2777 5960 6.461110 TGTTTCTAACTTATACTCCCTCCG 57.539 41.667 0.00 0.00 0.00 4.63
2778 5961 5.954150 TGTTTCTAACTTATACTCCCTCCGT 59.046 40.000 0.00 0.00 0.00 4.69
2780 5963 4.723309 TCTAACTTATACTCCCTCCGTCC 58.277 47.826 0.00 0.00 0.00 4.79
2781 5964 1.978454 ACTTATACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
2782 5965 1.245732 CTTATACTCCCTCCGTCCGG 58.754 60.000 0.00 0.00 0.00 5.14
2784 5967 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2785 5968 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2788 5971 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2791 5974 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2793 5976 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2795 5978 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
2797 5980 4.110482 CCGTCCGGAAATACTTGTCTTAG 58.890 47.826 5.23 0.00 37.50 2.18
2799 5982 4.142315 CGTCCGGAAATACTTGTCTTAGGA 60.142 45.833 5.23 0.00 0.00 2.94
2800 5983 5.622914 CGTCCGGAAATACTTGTCTTAGGAA 60.623 44.000 5.23 0.00 0.00 3.36
2802 5985 6.822170 GTCCGGAAATACTTGTCTTAGGAATT 59.178 38.462 5.23 0.00 0.00 2.17
2803 5986 6.821665 TCCGGAAATACTTGTCTTAGGAATTG 59.178 38.462 0.00 0.00 0.00 2.32
2804 5987 6.598064 CCGGAAATACTTGTCTTAGGAATTGT 59.402 38.462 0.00 0.00 0.00 2.71
2805 5988 7.120726 CCGGAAATACTTGTCTTAGGAATTGTT 59.879 37.037 0.00 0.00 0.00 2.83
2806 5989 7.962918 CGGAAATACTTGTCTTAGGAATTGTTG 59.037 37.037 0.00 0.00 0.00 3.33
2807 5990 8.793592 GGAAATACTTGTCTTAGGAATTGTTGT 58.206 33.333 0.00 0.00 0.00 3.32
2813 5996 9.877178 ACTTGTCTTAGGAATTGTTGTATCTAG 57.123 33.333 0.00 0.00 0.00 2.43
2860 6084 9.270640 CATCCATTTTCAACCATTTTTAAGACA 57.729 29.630 0.00 0.00 0.00 3.41
2861 6085 9.844257 ATCCATTTTCAACCATTTTTAAGACAA 57.156 25.926 0.00 0.00 0.00 3.18
2862 6086 9.323985 TCCATTTTCAACCATTTTTAAGACAAG 57.676 29.630 0.00 0.00 0.00 3.16
2869 6093 9.974980 TCAACCATTTTTAAGACAAGTATTTCC 57.025 29.630 0.00 0.00 0.00 3.13
2871 6095 7.599171 ACCATTTTTAAGACAAGTATTTCCGG 58.401 34.615 0.00 0.00 0.00 5.14
2872 6096 7.449086 ACCATTTTTAAGACAAGTATTTCCGGA 59.551 33.333 0.00 0.00 0.00 5.14
2873 6097 7.753580 CCATTTTTAAGACAAGTATTTCCGGAC 59.246 37.037 1.83 0.00 0.00 4.79
2875 6099 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
2876 6100 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
2877 6101 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
2878 6102 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2879 6103 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2880 6104 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2881 6105 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2889 6137 1.206371 CGGACGGAGGGAGTATTTGTT 59.794 52.381 0.00 0.00 0.00 2.83
2892 6140 4.442472 CGGACGGAGGGAGTATTTGTTAAT 60.442 45.833 0.00 0.00 0.00 1.40
2937 6186 9.522804 AGCTTCTATCTATAAACTTTTGTCGAG 57.477 33.333 0.00 0.00 0.00 4.04
2960 6209 9.743057 CGAGAATCTATTTGTGATAACTTCTCT 57.257 33.333 0.00 0.00 29.10 3.10
2967 6217 4.207891 TGTGATAACTTCTCTCCAAGGC 57.792 45.455 0.00 0.00 0.00 4.35
2968 6218 3.840666 TGTGATAACTTCTCTCCAAGGCT 59.159 43.478 0.00 0.00 0.00 4.58
2994 6244 6.016610 GGAGCCACTTTTGTATGTTTACTTCA 60.017 38.462 0.00 0.00 0.00 3.02
3001 6251 8.280497 ACTTTTGTATGTTTACTTCACGTGATC 58.720 33.333 20.80 6.73 0.00 2.92
3050 6300 7.320443 TCATTTGGTGAGCTTGTGTAATATC 57.680 36.000 0.00 0.00 31.80 1.63
3187 6443 2.361737 GGTTGCCTCCTTGGAGCC 60.362 66.667 11.01 0.71 38.35 4.70
3214 6470 5.241728 GTCCAATTCTTAACCACAAGCTTCT 59.758 40.000 0.00 0.00 0.00 2.85
3237 6493 3.253188 TCAAGGATAAGCAGCAACAACAC 59.747 43.478 0.00 0.00 0.00 3.32
3238 6494 1.806542 AGGATAAGCAGCAACAACACG 59.193 47.619 0.00 0.00 0.00 4.49
3250 6506 3.783943 GCAACAACACGGATAATTTAGCG 59.216 43.478 0.00 0.00 0.00 4.26
3253 6509 6.535811 CAACAACACGGATAATTTAGCGTTA 58.464 36.000 0.00 0.00 0.00 3.18
3270 6526 2.096980 CGTTACACGATCCTCTGCACTA 59.903 50.000 0.00 0.00 46.05 2.74
3274 6530 3.786635 ACACGATCCTCTGCACTATTTC 58.213 45.455 0.00 0.00 0.00 2.17
3334 6655 5.095145 TGCATCATCTTCTCTACAGCTTT 57.905 39.130 0.00 0.00 0.00 3.51
3338 6659 7.772292 TGCATCATCTTCTCTACAGCTTTTAAT 59.228 33.333 0.00 0.00 0.00 1.40
3345 6666 4.009675 CTCTACAGCTTTTAATGGCCACA 58.990 43.478 8.16 0.00 0.00 4.17
3349 6670 3.387699 ACAGCTTTTAATGGCCACAAGTT 59.612 39.130 8.16 0.00 0.00 2.66
3355 6676 6.258947 GCTTTTAATGGCCACAAGTTAAAACA 59.741 34.615 22.27 10.31 32.18 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.751732 TGAGCATTAGTTATTTGCACTTGTAG 58.248 34.615 0.00 0.00 38.84 2.74
1 2 7.680442 TGAGCATTAGTTATTTGCACTTGTA 57.320 32.000 0.00 0.00 38.84 2.41
2 3 6.573664 TGAGCATTAGTTATTTGCACTTGT 57.426 33.333 0.00 0.00 38.84 3.16
3 4 6.529125 CCTTGAGCATTAGTTATTTGCACTTG 59.471 38.462 0.00 0.00 38.84 3.16
4 5 6.209391 ACCTTGAGCATTAGTTATTTGCACTT 59.791 34.615 0.00 0.00 38.84 3.16
5 6 5.711976 ACCTTGAGCATTAGTTATTTGCACT 59.288 36.000 0.00 0.00 38.84 4.40
6 7 5.954335 ACCTTGAGCATTAGTTATTTGCAC 58.046 37.500 0.00 0.00 38.84 4.57
7 8 6.884295 ACTACCTTGAGCATTAGTTATTTGCA 59.116 34.615 0.00 0.00 38.84 4.08
8 9 7.321745 ACTACCTTGAGCATTAGTTATTTGC 57.678 36.000 0.00 0.00 36.63 3.68
9 10 9.817809 TCTACTACCTTGAGCATTAGTTATTTG 57.182 33.333 0.00 0.00 0.00 2.32
15 16 9.809395 TGTATATCTACTACCTTGAGCATTAGT 57.191 33.333 0.00 0.00 0.00 2.24
18 19 9.148879 ACTTGTATATCTACTACCTTGAGCATT 57.851 33.333 0.00 0.00 0.00 3.56
19 20 8.713708 ACTTGTATATCTACTACCTTGAGCAT 57.286 34.615 0.00 0.00 0.00 3.79
20 21 8.414003 CAACTTGTATATCTACTACCTTGAGCA 58.586 37.037 0.00 0.00 0.00 4.26
21 22 7.382759 GCAACTTGTATATCTACTACCTTGAGC 59.617 40.741 0.00 0.00 0.00 4.26
22 23 7.591795 CGCAACTTGTATATCTACTACCTTGAG 59.408 40.741 0.00 0.00 0.00 3.02
23 24 7.067859 ACGCAACTTGTATATCTACTACCTTGA 59.932 37.037 0.00 0.00 0.00 3.02
24 25 7.167635 CACGCAACTTGTATATCTACTACCTTG 59.832 40.741 0.00 0.00 0.00 3.61
25 26 7.067859 TCACGCAACTTGTATATCTACTACCTT 59.932 37.037 0.00 0.00 0.00 3.50
26 27 6.544931 TCACGCAACTTGTATATCTACTACCT 59.455 38.462 0.00 0.00 0.00 3.08
27 28 6.636044 GTCACGCAACTTGTATATCTACTACC 59.364 42.308 0.00 0.00 0.00 3.18
28 29 7.416022 AGTCACGCAACTTGTATATCTACTAC 58.584 38.462 0.00 0.00 0.00 2.73
29 30 7.563888 AGTCACGCAACTTGTATATCTACTA 57.436 36.000 0.00 0.00 0.00 1.82
30 31 6.452494 AGTCACGCAACTTGTATATCTACT 57.548 37.500 0.00 0.00 0.00 2.57
31 32 7.416022 ACTAGTCACGCAACTTGTATATCTAC 58.584 38.462 3.66 0.00 34.23 2.59
32 33 7.281549 TGACTAGTCACGCAACTTGTATATCTA 59.718 37.037 21.74 0.00 35.76 1.98
33 34 6.095021 TGACTAGTCACGCAACTTGTATATCT 59.905 38.462 21.74 0.00 35.76 1.98
34 35 6.263344 TGACTAGTCACGCAACTTGTATATC 58.737 40.000 21.74 0.00 35.76 1.63
35 36 6.203808 TGACTAGTCACGCAACTTGTATAT 57.796 37.500 21.74 0.00 35.76 0.86
36 37 5.632244 TGACTAGTCACGCAACTTGTATA 57.368 39.130 21.74 0.00 35.76 1.47
37 38 4.514781 TGACTAGTCACGCAACTTGTAT 57.485 40.909 21.74 0.00 35.76 2.29
38 39 3.994204 TGACTAGTCACGCAACTTGTA 57.006 42.857 21.74 0.00 35.76 2.41
39 40 2.882927 TGACTAGTCACGCAACTTGT 57.117 45.000 21.74 4.92 37.82 3.16
58 59 7.312170 GGTACTGTAGTAGCAACGTACACGT 62.312 48.000 14.46 0.68 45.08 4.49
59 60 3.193157 ACTGTAGTAGCAACGTACACG 57.807 47.619 0.00 0.00 46.33 4.49
60 61 4.406943 GGTACTGTAGTAGCAACGTACAC 58.593 47.826 14.46 0.00 45.45 2.90
61 62 4.685169 GGTACTGTAGTAGCAACGTACA 57.315 45.455 14.46 0.00 45.45 2.90
69 70 7.381323 TGGTTAGAAAAAGGTACTGTAGTAGC 58.619 38.462 12.10 12.10 46.22 3.58
70 71 9.939802 ATTGGTTAGAAAAAGGTACTGTAGTAG 57.060 33.333 0.00 0.00 40.86 2.57
75 76 9.668497 GAGATATTGGTTAGAAAAAGGTACTGT 57.332 33.333 0.00 0.00 40.86 3.55
76 77 9.892130 AGAGATATTGGTTAGAAAAAGGTACTG 57.108 33.333 0.00 0.00 40.86 2.74
80 81 7.982354 CGAGAGAGATATTGGTTAGAAAAAGGT 59.018 37.037 0.00 0.00 0.00 3.50
81 82 7.042389 GCGAGAGAGATATTGGTTAGAAAAAGG 60.042 40.741 0.00 0.00 0.00 3.11
82 83 7.042389 GGCGAGAGAGATATTGGTTAGAAAAAG 60.042 40.741 0.00 0.00 0.00 2.27
83 84 6.761714 GGCGAGAGAGATATTGGTTAGAAAAA 59.238 38.462 0.00 0.00 0.00 1.94
84 85 6.281405 GGCGAGAGAGATATTGGTTAGAAAA 58.719 40.000 0.00 0.00 0.00 2.29
85 86 5.507482 CGGCGAGAGAGATATTGGTTAGAAA 60.507 44.000 0.00 0.00 0.00 2.52
86 87 4.023107 CGGCGAGAGAGATATTGGTTAGAA 60.023 45.833 0.00 0.00 0.00 2.10
87 88 3.502595 CGGCGAGAGAGATATTGGTTAGA 59.497 47.826 0.00 0.00 0.00 2.10
88 89 3.253677 ACGGCGAGAGAGATATTGGTTAG 59.746 47.826 16.62 0.00 0.00 2.34
89 90 3.220110 ACGGCGAGAGAGATATTGGTTA 58.780 45.455 16.62 0.00 0.00 2.85
90 91 2.032620 ACGGCGAGAGAGATATTGGTT 58.967 47.619 16.62 0.00 0.00 3.67
91 92 1.693627 ACGGCGAGAGAGATATTGGT 58.306 50.000 16.62 0.00 0.00 3.67
92 93 2.802787 AACGGCGAGAGAGATATTGG 57.197 50.000 16.62 0.00 0.00 3.16
93 94 4.677378 CAGTTAACGGCGAGAGAGATATTG 59.323 45.833 16.62 0.00 0.00 1.90
94 95 4.261656 CCAGTTAACGGCGAGAGAGATATT 60.262 45.833 16.62 0.00 0.00 1.28
95 96 3.253677 CCAGTTAACGGCGAGAGAGATAT 59.746 47.826 16.62 0.00 0.00 1.63
96 97 2.617308 CCAGTTAACGGCGAGAGAGATA 59.383 50.000 16.62 0.00 0.00 1.98
97 98 1.405821 CCAGTTAACGGCGAGAGAGAT 59.594 52.381 16.62 0.00 0.00 2.75
98 99 0.809385 CCAGTTAACGGCGAGAGAGA 59.191 55.000 16.62 0.00 0.00 3.10
99 100 0.179134 CCCAGTTAACGGCGAGAGAG 60.179 60.000 16.62 0.00 0.00 3.20
100 101 1.601419 CCCCAGTTAACGGCGAGAGA 61.601 60.000 16.62 0.00 0.00 3.10
101 102 1.153628 CCCCAGTTAACGGCGAGAG 60.154 63.158 16.62 0.00 0.00 3.20
102 103 1.607178 TCCCCAGTTAACGGCGAGA 60.607 57.895 16.62 0.00 0.00 4.04
103 104 1.447314 GTCCCCAGTTAACGGCGAG 60.447 63.158 16.62 0.00 0.00 5.03
104 105 1.909781 AGTCCCCAGTTAACGGCGA 60.910 57.895 16.62 5.64 0.00 5.54
105 106 1.740296 CAGTCCCCAGTTAACGGCG 60.740 63.158 4.80 4.80 0.00 6.46
106 107 0.953960 CACAGTCCCCAGTTAACGGC 60.954 60.000 9.99 0.00 0.00 5.68
107 108 0.682852 TCACAGTCCCCAGTTAACGG 59.317 55.000 0.00 4.84 0.00 4.44
108 109 1.343465 AGTCACAGTCCCCAGTTAACG 59.657 52.381 0.00 0.00 0.00 3.18
109 110 2.550208 CCAGTCACAGTCCCCAGTTAAC 60.550 54.545 0.00 0.00 0.00 2.01
110 111 1.697432 CCAGTCACAGTCCCCAGTTAA 59.303 52.381 0.00 0.00 0.00 2.01
111 112 1.132977 TCCAGTCACAGTCCCCAGTTA 60.133 52.381 0.00 0.00 0.00 2.24
112 113 0.399949 TCCAGTCACAGTCCCCAGTT 60.400 55.000 0.00 0.00 0.00 3.16
113 114 0.399949 TTCCAGTCACAGTCCCCAGT 60.400 55.000 0.00 0.00 0.00 4.00
114 115 0.035458 GTTCCAGTCACAGTCCCCAG 59.965 60.000 0.00 0.00 0.00 4.45
115 116 1.415672 GGTTCCAGTCACAGTCCCCA 61.416 60.000 0.00 0.00 0.00 4.96
116 117 1.128188 AGGTTCCAGTCACAGTCCCC 61.128 60.000 0.00 0.00 0.00 4.81
117 118 0.035458 CAGGTTCCAGTCACAGTCCC 59.965 60.000 0.00 0.00 0.00 4.46
118 119 0.035458 CCAGGTTCCAGTCACAGTCC 59.965 60.000 0.00 0.00 0.00 3.85
119 120 1.048601 TCCAGGTTCCAGTCACAGTC 58.951 55.000 0.00 0.00 0.00 3.51
120 121 1.507140 TTCCAGGTTCCAGTCACAGT 58.493 50.000 0.00 0.00 0.00 3.55
121 122 2.638480 TTTCCAGGTTCCAGTCACAG 57.362 50.000 0.00 0.00 0.00 3.66
122 123 4.349636 TCTTATTTCCAGGTTCCAGTCACA 59.650 41.667 0.00 0.00 0.00 3.58
123 124 4.695928 GTCTTATTTCCAGGTTCCAGTCAC 59.304 45.833 0.00 0.00 0.00 3.67
124 125 4.263331 GGTCTTATTTCCAGGTTCCAGTCA 60.263 45.833 0.00 0.00 0.00 3.41
125 126 4.262617 GGTCTTATTTCCAGGTTCCAGTC 58.737 47.826 0.00 0.00 0.00 3.51
126 127 3.655777 TGGTCTTATTTCCAGGTTCCAGT 59.344 43.478 0.00 0.00 0.00 4.00
127 128 4.301072 TGGTCTTATTTCCAGGTTCCAG 57.699 45.455 0.00 0.00 0.00 3.86
128 129 4.325030 GGATGGTCTTATTTCCAGGTTCCA 60.325 45.833 0.00 0.00 37.14 3.53
129 130 4.207955 GGATGGTCTTATTTCCAGGTTCC 58.792 47.826 0.00 0.00 37.14 3.62
130 131 4.207955 GGGATGGTCTTATTTCCAGGTTC 58.792 47.826 0.00 0.00 37.14 3.62
131 132 3.596046 TGGGATGGTCTTATTTCCAGGTT 59.404 43.478 0.00 0.00 37.14 3.50
132 133 3.197983 TGGGATGGTCTTATTTCCAGGT 58.802 45.455 0.00 0.00 37.14 4.00
133 134 3.951563 TGGGATGGTCTTATTTCCAGG 57.048 47.619 0.00 0.00 37.14 4.45
134 135 4.860022 ACTTGGGATGGTCTTATTTCCAG 58.140 43.478 0.00 0.00 37.14 3.86
135 136 4.325030 GGACTTGGGATGGTCTTATTTCCA 60.325 45.833 0.00 0.00 38.14 3.53
136 137 4.207955 GGACTTGGGATGGTCTTATTTCC 58.792 47.826 0.00 0.00 33.46 3.13
137 138 4.855340 TGGACTTGGGATGGTCTTATTTC 58.145 43.478 0.00 0.00 33.46 2.17
138 139 4.946160 TGGACTTGGGATGGTCTTATTT 57.054 40.909 0.00 0.00 33.46 1.40
139 140 5.472301 AATGGACTTGGGATGGTCTTATT 57.528 39.130 0.00 0.00 33.46 1.40
140 141 5.194537 AGAAATGGACTTGGGATGGTCTTAT 59.805 40.000 0.00 0.00 33.46 1.73
141 142 4.540099 AGAAATGGACTTGGGATGGTCTTA 59.460 41.667 0.00 0.00 33.46 2.10
142 143 3.334881 AGAAATGGACTTGGGATGGTCTT 59.665 43.478 0.00 0.00 33.46 3.01
143 144 2.922283 AGAAATGGACTTGGGATGGTCT 59.078 45.455 0.00 0.00 33.46 3.85
144 145 3.372440 AGAAATGGACTTGGGATGGTC 57.628 47.619 0.00 0.00 0.00 4.02
145 146 3.334881 AGAAGAAATGGACTTGGGATGGT 59.665 43.478 0.00 0.00 0.00 3.55
146 147 3.973425 AGAAGAAATGGACTTGGGATGG 58.027 45.455 0.00 0.00 0.00 3.51
147 148 5.259632 AGAAGAAGAAATGGACTTGGGATG 58.740 41.667 0.00 0.00 0.00 3.51
148 149 5.527026 AGAAGAAGAAATGGACTTGGGAT 57.473 39.130 0.00 0.00 0.00 3.85
149 150 5.324832 AAGAAGAAGAAATGGACTTGGGA 57.675 39.130 0.00 0.00 0.00 4.37
150 151 7.709149 AATAAGAAGAAGAAATGGACTTGGG 57.291 36.000 0.00 0.00 0.00 4.12
171 172 8.547894 CGCTGTAGCAGTTGTATTCAAATAATA 58.452 33.333 4.59 0.00 42.21 0.98
172 173 7.279981 TCGCTGTAGCAGTTGTATTCAAATAAT 59.720 33.333 4.59 0.00 42.21 1.28
173 174 6.592220 TCGCTGTAGCAGTTGTATTCAAATAA 59.408 34.615 4.59 0.00 42.21 1.40
174 175 6.103330 TCGCTGTAGCAGTTGTATTCAAATA 58.897 36.000 4.59 0.00 42.21 1.40
175 176 4.935205 TCGCTGTAGCAGTTGTATTCAAAT 59.065 37.500 4.59 0.00 42.21 2.32
176 177 4.311606 TCGCTGTAGCAGTTGTATTCAAA 58.688 39.130 4.59 0.00 42.21 2.69
177 178 3.920446 TCGCTGTAGCAGTTGTATTCAA 58.080 40.909 4.59 0.00 42.21 2.69
178 179 3.586100 TCGCTGTAGCAGTTGTATTCA 57.414 42.857 4.59 0.00 42.21 2.57
179 180 4.260375 CCAATCGCTGTAGCAGTTGTATTC 60.260 45.833 4.59 0.00 42.21 1.75
180 181 3.623060 CCAATCGCTGTAGCAGTTGTATT 59.377 43.478 4.59 0.00 42.21 1.89
181 182 3.198068 CCAATCGCTGTAGCAGTTGTAT 58.802 45.455 4.59 0.00 42.21 2.29
190 191 3.601586 CGTAAAATCGCCAATCGCTGTAG 60.602 47.826 0.00 0.00 38.27 2.74
194 195 0.655733 CCGTAAAATCGCCAATCGCT 59.344 50.000 0.00 0.00 38.27 4.93
196 197 0.316689 GCCCGTAAAATCGCCAATCG 60.317 55.000 0.00 0.00 40.15 3.34
228 229 9.917129 TGTAATTTTAGTCTCGTAACAGATCAA 57.083 29.630 0.00 0.00 0.00 2.57
229 230 9.917129 TTGTAATTTTAGTCTCGTAACAGATCA 57.083 29.630 0.00 0.00 0.00 2.92
279 308 5.170198 AGATAATGATTAGCCCCACCCTAA 58.830 41.667 0.00 0.00 0.00 2.69
293 322 9.543783 GACGAAACTACCCTTTTAGATAATGAT 57.456 33.333 0.00 0.00 0.00 2.45
299 328 5.750352 TGGACGAAACTACCCTTTTAGAT 57.250 39.130 0.00 0.00 0.00 1.98
315 344 2.151202 GCCTTGACTGAAATTGGACGA 58.849 47.619 0.00 0.00 0.00 4.20
326 355 0.310854 GAACGGTTTGGCCTTGACTG 59.689 55.000 3.32 7.64 34.25 3.51
355 384 2.028190 CGGGCCATACAGCGAGAG 59.972 66.667 4.39 0.00 0.00 3.20
356 385 2.441348 TCGGGCCATACAGCGAGA 60.441 61.111 4.39 0.00 0.00 4.04
365 394 2.591753 CCAGATGTGTCGGGCCAT 59.408 61.111 4.39 0.00 32.91 4.40
396 459 5.243060 AGGGGAAAAATTTTCTAGGTGAACG 59.757 40.000 16.79 0.00 33.88 3.95
397 460 6.665992 AGGGGAAAAATTTTCTAGGTGAAC 57.334 37.500 16.79 0.00 33.88 3.18
401 464 7.709601 ACAGATAGGGGAAAAATTTTCTAGGT 58.290 34.615 16.79 4.07 0.00 3.08
403 466 8.398665 CGAACAGATAGGGGAAAAATTTTCTAG 58.601 37.037 16.79 3.13 0.00 2.43
411 474 4.007659 GCTTCGAACAGATAGGGGAAAAA 58.992 43.478 0.00 0.00 0.00 1.94
414 477 2.168521 CTGCTTCGAACAGATAGGGGAA 59.831 50.000 17.52 0.00 37.32 3.97
416 479 1.808133 GCTGCTTCGAACAGATAGGGG 60.808 57.143 23.26 2.24 37.32 4.79
452 519 3.838271 GAGGTCATCGGCGGCTCA 61.838 66.667 7.21 0.00 0.00 4.26
491 565 3.227276 CCGCCATCCTAGCCGACT 61.227 66.667 0.00 0.00 0.00 4.18
571 719 0.733223 GTGCTCTTCCTTCGGACGAC 60.733 60.000 0.00 0.00 0.00 4.34
572 720 1.585006 GTGCTCTTCCTTCGGACGA 59.415 57.895 0.00 0.00 0.00 4.20
573 721 1.446272 GGTGCTCTTCCTTCGGACG 60.446 63.158 0.00 0.00 0.00 4.79
574 722 1.079057 GGGTGCTCTTCCTTCGGAC 60.079 63.158 0.00 0.00 0.00 4.79
575 723 1.229209 AGGGTGCTCTTCCTTCGGA 60.229 57.895 0.00 0.00 0.00 4.55
576 724 1.078848 CAGGGTGCTCTTCCTTCGG 60.079 63.158 0.00 0.00 0.00 4.30
577 725 1.743252 GCAGGGTGCTCTTCCTTCG 60.743 63.158 0.00 0.00 40.96 3.79
578 726 1.743252 CGCAGGGTGCTCTTCCTTC 60.743 63.158 0.00 0.00 42.25 3.46
610 835 1.214589 CCTCCTCCGTAACACCACG 59.785 63.158 0.00 0.00 41.59 4.94
611 836 1.079336 GCCTCCTCCGTAACACCAC 60.079 63.158 0.00 0.00 0.00 4.16
612 837 2.642254 CGCCTCCTCCGTAACACCA 61.642 63.158 0.00 0.00 0.00 4.17
615 840 2.036098 TCCGCCTCCTCCGTAACA 59.964 61.111 0.00 0.00 0.00 2.41
618 843 1.918467 TTCTCTCCGCCTCCTCCGTA 61.918 60.000 0.00 0.00 0.00 4.02
641 869 2.852495 CTTCACGGGGTCATCGGTGG 62.852 65.000 0.00 0.00 38.16 4.61
650 878 2.995574 CCTCGACCTTCACGGGGT 60.996 66.667 0.00 0.00 45.10 4.95
834 1109 1.589716 AAGAGCAATGGAAGCCGTGC 61.590 55.000 0.00 0.00 37.41 5.34
968 1806 6.959639 AAATCTTAGACAAAAGGAGTTGCA 57.040 33.333 0.00 0.00 31.29 4.08
1087 1929 5.957798 TCTATCAAAGCATTGGAAGCAAAG 58.042 37.500 1.24 0.00 37.15 2.77
1106 1958 3.650942 TGAACCGGCCCTTATCAATCTAT 59.349 43.478 0.00 0.00 0.00 1.98
1249 2122 3.442977 AGCTTGATCTTGCCTGAAATGAC 59.557 43.478 6.84 0.00 0.00 3.06
1250 2123 3.442625 CAGCTTGATCTTGCCTGAAATGA 59.557 43.478 6.84 0.00 0.00 2.57
1389 2662 0.663153 GCGCATCCTTAAGCCGATTT 59.337 50.000 0.30 0.00 0.00 2.17
1409 2683 5.178061 TCAAGCATGTCAGATATGTCGTTT 58.822 37.500 8.79 0.00 0.00 3.60
1418 2692 6.829229 TCAAAATCTTCAAGCATGTCAGAT 57.171 33.333 0.00 1.95 32.46 2.90
1452 2726 2.375174 TCTTGCATACCAGGTTGAGGTT 59.625 45.455 0.00 0.00 40.54 3.50
1475 2749 2.069273 GACAGTGACCAAATCGACAGG 58.931 52.381 0.00 0.00 0.00 4.00
1493 2770 3.620374 ACAGCATTCAGATCACGATTGAC 59.380 43.478 0.00 0.00 33.38 3.18
1500 2819 9.065871 GTTATTAAACAACAGCATTCAGATCAC 57.934 33.333 0.00 0.00 35.56 3.06
1602 2922 4.219288 GCAGGGACATTCAAAGATCAACTT 59.781 41.667 0.00 0.00 40.98 2.66
1627 3008 7.398024 AGCTTACTATTGGTGAGACAAAAGAT 58.602 34.615 0.00 0.00 33.96 2.40
1636 3017 4.202357 TGGGCATAGCTTACTATTGGTGAG 60.202 45.833 0.00 0.00 36.96 3.51
1711 3092 6.237901 TGCAGAAACTGATATTACACTTGGT 58.762 36.000 2.81 0.00 32.44 3.67
1775 3434 0.465460 GGGCGGAGATGGCATTACAA 60.465 55.000 0.00 0.00 35.84 2.41
1778 3437 1.352622 AAGGGGCGGAGATGGCATTA 61.353 55.000 0.00 0.00 35.84 1.90
1780 3439 2.631012 GAAAGGGGCGGAGATGGCAT 62.631 60.000 0.00 0.00 35.84 4.40
1781 3440 3.338250 AAAGGGGCGGAGATGGCA 61.338 61.111 0.00 0.00 35.84 4.92
1834 3508 1.374947 TGGCTGCCCACTGTAAGAC 59.625 57.895 17.53 0.00 35.79 3.01
1924 3619 5.395768 GGAGCTCAACACCATAACTATCACT 60.396 44.000 17.19 0.00 0.00 3.41
1942 3637 2.064762 CTAATGCGCTACATGGAGCTC 58.935 52.381 27.11 20.50 39.60 4.09
1946 3641 2.693074 TCAGACTAATGCGCTACATGGA 59.307 45.455 9.73 0.00 39.60 3.41
1947 3642 3.097877 TCAGACTAATGCGCTACATGG 57.902 47.619 9.73 0.00 39.60 3.66
1948 3643 5.015067 CATTCAGACTAATGCGCTACATG 57.985 43.478 9.73 0.00 39.60 3.21
1957 3652 6.089016 CAGCTTGTTTTGCATTCAGACTAATG 59.911 38.462 0.00 0.00 39.41 1.90
1958 3653 6.154445 CAGCTTGTTTTGCATTCAGACTAAT 58.846 36.000 0.00 0.00 0.00 1.73
1959 3654 5.522456 CAGCTTGTTTTGCATTCAGACTAA 58.478 37.500 0.00 0.00 0.00 2.24
1963 3658 2.101082 TGCAGCTTGTTTTGCATTCAGA 59.899 40.909 0.00 0.00 44.72 3.27
1964 3659 2.475818 TGCAGCTTGTTTTGCATTCAG 58.524 42.857 0.00 0.00 44.72 3.02
1965 3660 2.598686 TGCAGCTTGTTTTGCATTCA 57.401 40.000 0.00 0.00 44.72 2.57
1970 3665 2.476241 GGTACATTGCAGCTTGTTTTGC 59.524 45.455 6.84 0.00 40.67 3.68
1971 3666 3.715495 TGGTACATTGCAGCTTGTTTTG 58.285 40.909 6.84 0.00 0.00 2.44
1972 3667 4.119136 GTTGGTACATTGCAGCTTGTTTT 58.881 39.130 6.84 0.00 39.30 2.43
1973 3668 3.384467 AGTTGGTACATTGCAGCTTGTTT 59.616 39.130 6.84 0.00 39.30 2.83
1974 3669 2.958355 AGTTGGTACATTGCAGCTTGTT 59.042 40.909 6.84 0.00 39.30 2.83
1975 3670 2.554032 GAGTTGGTACATTGCAGCTTGT 59.446 45.455 6.76 6.76 39.30 3.16
1977 3672 3.146104 AGAGTTGGTACATTGCAGCTT 57.854 42.857 0.00 0.00 39.30 3.74
1978 3673 2.816087 CAAGAGTTGGTACATTGCAGCT 59.184 45.455 0.00 0.00 39.30 4.24
1979 3674 2.554032 ACAAGAGTTGGTACATTGCAGC 59.446 45.455 0.00 0.00 39.30 5.25
2021 3716 7.487829 GCATCACGAATAACATGTACCATTTTT 59.512 33.333 0.00 0.00 0.00 1.94
2024 3843 5.822519 AGCATCACGAATAACATGTACCATT 59.177 36.000 0.00 0.00 0.00 3.16
2051 3870 6.294731 GCCTCTCCTGCAGAAAATAAGAAAAA 60.295 38.462 17.39 0.00 0.00 1.94
2052 3871 5.183904 GCCTCTCCTGCAGAAAATAAGAAAA 59.816 40.000 17.39 0.00 0.00 2.29
2053 3872 4.702131 GCCTCTCCTGCAGAAAATAAGAAA 59.298 41.667 17.39 0.00 0.00 2.52
2054 3873 4.018960 AGCCTCTCCTGCAGAAAATAAGAA 60.019 41.667 17.39 0.00 0.00 2.52
2055 3874 3.521126 AGCCTCTCCTGCAGAAAATAAGA 59.479 43.478 17.39 6.96 0.00 2.10
2056 3875 3.626670 CAGCCTCTCCTGCAGAAAATAAG 59.373 47.826 17.39 3.56 0.00 1.73
2057 3876 3.614092 CAGCCTCTCCTGCAGAAAATAA 58.386 45.455 17.39 0.00 0.00 1.40
2058 3877 2.092753 CCAGCCTCTCCTGCAGAAAATA 60.093 50.000 17.39 0.00 0.00 1.40
2059 3878 1.340795 CCAGCCTCTCCTGCAGAAAAT 60.341 52.381 17.39 0.00 0.00 1.82
2060 3879 0.037303 CCAGCCTCTCCTGCAGAAAA 59.963 55.000 17.39 0.00 0.00 2.29
2061 3880 1.681666 CCAGCCTCTCCTGCAGAAA 59.318 57.895 17.39 1.42 0.00 2.52
2062 3881 2.964310 GCCAGCCTCTCCTGCAGAA 61.964 63.158 17.39 0.00 0.00 3.02
2063 3882 3.397439 GCCAGCCTCTCCTGCAGA 61.397 66.667 17.39 0.00 0.00 4.26
2064 3883 2.553765 AATGCCAGCCTCTCCTGCAG 62.554 60.000 6.78 6.78 0.00 4.41
2065 3884 2.146146 AAATGCCAGCCTCTCCTGCA 62.146 55.000 0.00 0.00 0.00 4.41
2066 3885 1.379576 AAATGCCAGCCTCTCCTGC 60.380 57.895 0.00 0.00 0.00 4.85
2067 3886 0.034767 TCAAATGCCAGCCTCTCCTG 60.035 55.000 0.00 0.00 0.00 3.86
2068 3887 0.034670 GTCAAATGCCAGCCTCTCCT 60.035 55.000 0.00 0.00 0.00 3.69
2069 3888 0.322816 TGTCAAATGCCAGCCTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
2070 3889 1.538047 TTGTCAAATGCCAGCCTCTC 58.462 50.000 0.00 0.00 0.00 3.20
2071 3890 2.226962 ATTGTCAAATGCCAGCCTCT 57.773 45.000 0.00 0.00 0.00 3.69
2072 3891 2.223340 CGTATTGTCAAATGCCAGCCTC 60.223 50.000 0.00 0.00 0.00 4.70
2073 3892 1.745087 CGTATTGTCAAATGCCAGCCT 59.255 47.619 0.00 0.00 0.00 4.58
2074 3893 1.202290 CCGTATTGTCAAATGCCAGCC 60.202 52.381 0.00 0.00 0.00 4.85
2075 3894 1.472480 ACCGTATTGTCAAATGCCAGC 59.528 47.619 0.00 0.00 0.00 4.85
2076 3895 3.440173 AGAACCGTATTGTCAAATGCCAG 59.560 43.478 0.00 0.00 0.00 4.85
2077 3896 3.190327 CAGAACCGTATTGTCAAATGCCA 59.810 43.478 0.00 0.00 0.00 4.92
2078 3897 3.190535 ACAGAACCGTATTGTCAAATGCC 59.809 43.478 0.00 0.00 0.00 4.40
2079 3898 4.158384 CACAGAACCGTATTGTCAAATGC 58.842 43.478 0.00 0.00 0.00 3.56
2080 3899 5.146460 CACACAGAACCGTATTGTCAAATG 58.854 41.667 0.00 0.00 0.00 2.32
2081 3900 4.819630 ACACACAGAACCGTATTGTCAAAT 59.180 37.500 0.00 0.00 0.00 2.32
2082 3901 4.034626 CACACACAGAACCGTATTGTCAAA 59.965 41.667 0.00 0.00 0.00 2.69
2083 3902 3.558006 CACACACAGAACCGTATTGTCAA 59.442 43.478 0.00 0.00 0.00 3.18
2084 3903 3.127589 CACACACAGAACCGTATTGTCA 58.872 45.455 0.00 0.00 0.00 3.58
2085 3904 2.096417 GCACACACAGAACCGTATTGTC 60.096 50.000 0.00 0.00 0.00 3.18
2086 3905 1.871039 GCACACACAGAACCGTATTGT 59.129 47.619 0.00 0.00 0.00 2.71
2087 3906 1.136363 CGCACACACAGAACCGTATTG 60.136 52.381 0.00 0.00 0.00 1.90
2088 3907 1.144969 CGCACACACAGAACCGTATT 58.855 50.000 0.00 0.00 0.00 1.89
2089 3908 0.032952 ACGCACACACAGAACCGTAT 59.967 50.000 0.00 0.00 0.00 3.06
2090 3909 0.179105 AACGCACACACAGAACCGTA 60.179 50.000 0.00 0.00 0.00 4.02
2091 3910 1.426041 GAACGCACACACAGAACCGT 61.426 55.000 0.00 0.00 0.00 4.83
2092 3911 1.275657 GAACGCACACACAGAACCG 59.724 57.895 0.00 0.00 0.00 4.44
2093 3912 0.027586 GTGAACGCACACACAGAACC 59.972 55.000 7.53 0.00 44.51 3.62
2094 3913 0.315059 CGTGAACGCACACACAGAAC 60.315 55.000 11.88 0.00 45.41 3.01
2095 3914 1.425267 CCGTGAACGCACACACAGAA 61.425 55.000 11.88 0.00 45.41 3.02
2096 3915 1.880796 CCGTGAACGCACACACAGA 60.881 57.895 11.88 0.00 45.41 3.41
2097 3916 2.625906 CCGTGAACGCACACACAG 59.374 61.111 11.88 0.00 45.41 3.66
2098 3917 3.568743 GCCGTGAACGCACACACA 61.569 61.111 11.88 0.00 45.41 3.72
2099 3918 3.269347 AGCCGTGAACGCACACAC 61.269 61.111 11.88 0.00 45.41 3.82
2100 3919 3.268603 CAGCCGTGAACGCACACA 61.269 61.111 11.88 0.00 45.41 3.72
2101 3920 4.666532 GCAGCCGTGAACGCACAC 62.667 66.667 0.00 3.02 45.41 3.82
2102 3921 4.908687 AGCAGCCGTGAACGCACA 62.909 61.111 0.00 0.00 45.41 4.57
2103 3922 4.374702 CAGCAGCCGTGAACGCAC 62.375 66.667 0.00 0.00 41.67 5.34
2106 3925 4.081030 CAGCAGCAGCCGTGAACG 62.081 66.667 0.00 0.00 43.56 3.95
2107 3926 4.395583 GCAGCAGCAGCCGTGAAC 62.396 66.667 0.00 0.00 43.56 3.18
2118 3937 1.242076 AAAACTACAGGCTGCAGCAG 58.758 50.000 37.63 30.16 44.36 4.24
2119 3938 1.608590 GAAAAACTACAGGCTGCAGCA 59.391 47.619 37.63 18.23 44.36 4.41
2120 3939 1.882623 AGAAAAACTACAGGCTGCAGC 59.117 47.619 30.88 30.88 41.14 5.25
2121 3940 3.316308 ACAAGAAAAACTACAGGCTGCAG 59.684 43.478 15.89 14.45 0.00 4.41
2122 3941 3.066621 CACAAGAAAAACTACAGGCTGCA 59.933 43.478 15.89 0.00 0.00 4.41
2123 3942 3.550842 CCACAAGAAAAACTACAGGCTGC 60.551 47.826 15.89 0.00 0.00 5.25
2124 3943 3.004734 CCCACAAGAAAAACTACAGGCTG 59.995 47.826 14.16 14.16 0.00 4.85
2125 3944 3.222603 CCCACAAGAAAAACTACAGGCT 58.777 45.455 0.00 0.00 0.00 4.58
2126 3945 2.296190 CCCCACAAGAAAAACTACAGGC 59.704 50.000 0.00 0.00 0.00 4.85
2127 3946 3.562182 ACCCCACAAGAAAAACTACAGG 58.438 45.455 0.00 0.00 0.00 4.00
2128 3947 3.250040 CGACCCCACAAGAAAAACTACAG 59.750 47.826 0.00 0.00 0.00 2.74
2129 3948 3.118334 TCGACCCCACAAGAAAAACTACA 60.118 43.478 0.00 0.00 0.00 2.74
2130 3949 3.249320 GTCGACCCCACAAGAAAAACTAC 59.751 47.826 3.51 0.00 0.00 2.73
2131 3950 3.469739 GTCGACCCCACAAGAAAAACTA 58.530 45.455 3.51 0.00 0.00 2.24
2132 3951 2.294979 GTCGACCCCACAAGAAAAACT 58.705 47.619 3.51 0.00 0.00 2.66
2133 3952 1.335810 GGTCGACCCCACAAGAAAAAC 59.664 52.381 24.75 0.00 0.00 2.43
2134 3953 1.682740 GGTCGACCCCACAAGAAAAA 58.317 50.000 24.75 0.00 0.00 1.94
2135 3954 0.533308 CGGTCGACCCCACAAGAAAA 60.533 55.000 28.52 0.00 0.00 2.29
2136 3955 1.070105 CGGTCGACCCCACAAGAAA 59.930 57.895 28.52 0.00 0.00 2.52
2137 3956 0.827089 TACGGTCGACCCCACAAGAA 60.827 55.000 28.52 2.59 0.00 2.52
2138 3957 1.228521 TACGGTCGACCCCACAAGA 60.229 57.895 28.52 3.44 0.00 3.02
2139 3958 1.214589 CTACGGTCGACCCCACAAG 59.785 63.158 28.52 15.62 0.00 3.16
2140 3959 0.251121 TACTACGGTCGACCCCACAA 60.251 55.000 28.52 9.18 0.00 3.33
2141 3960 0.251121 TTACTACGGTCGACCCCACA 60.251 55.000 28.52 10.16 0.00 4.17
2142 3961 1.066152 GATTACTACGGTCGACCCCAC 59.934 57.143 28.52 4.12 0.00 4.61
2143 3962 1.392589 GATTACTACGGTCGACCCCA 58.607 55.000 28.52 15.25 0.00 4.96
2144 3963 0.670706 GGATTACTACGGTCGACCCC 59.329 60.000 28.52 16.89 0.00 4.95
2145 3964 1.392589 TGGATTACTACGGTCGACCC 58.607 55.000 28.52 11.63 0.00 4.46
2146 3965 2.620115 TGATGGATTACTACGGTCGACC 59.380 50.000 25.28 25.28 0.00 4.79
2147 3966 3.976793 TGATGGATTACTACGGTCGAC 57.023 47.619 7.13 7.13 0.00 4.20
2148 3967 3.243301 GCTTGATGGATTACTACGGTCGA 60.243 47.826 0.00 0.00 0.00 4.20
2149 3968 3.050619 GCTTGATGGATTACTACGGTCG 58.949 50.000 0.00 0.00 0.00 4.79
2150 3969 4.323553 AGCTTGATGGATTACTACGGTC 57.676 45.455 0.00 0.00 0.00 4.79
2151 3970 4.262079 GCTAGCTTGATGGATTACTACGGT 60.262 45.833 7.70 0.00 0.00 4.83
2152 3971 4.021894 AGCTAGCTTGATGGATTACTACGG 60.022 45.833 12.68 0.00 0.00 4.02
2153 3972 4.920340 CAGCTAGCTTGATGGATTACTACG 59.080 45.833 16.46 0.00 0.00 3.51
2154 3973 4.688413 GCAGCTAGCTTGATGGATTACTAC 59.312 45.833 16.46 0.00 41.15 2.73
2155 3974 4.344968 TGCAGCTAGCTTGATGGATTACTA 59.655 41.667 16.46 0.00 45.94 1.82
2156 3975 3.135348 TGCAGCTAGCTTGATGGATTACT 59.865 43.478 16.46 0.00 45.94 2.24
2157 3976 3.470709 TGCAGCTAGCTTGATGGATTAC 58.529 45.455 16.46 0.00 45.94 1.89
2158 3977 3.843893 TGCAGCTAGCTTGATGGATTA 57.156 42.857 16.46 0.00 45.94 1.75
2159 3978 2.723322 TGCAGCTAGCTTGATGGATT 57.277 45.000 16.46 0.00 45.94 3.01
2160 3979 2.953284 ATGCAGCTAGCTTGATGGAT 57.047 45.000 16.46 14.00 45.94 3.41
2161 3980 2.723322 AATGCAGCTAGCTTGATGGA 57.277 45.000 16.46 12.72 45.94 3.41
2162 3981 4.517832 TCAATAATGCAGCTAGCTTGATGG 59.482 41.667 16.46 4.36 45.94 3.51
2163 3982 5.684550 TCAATAATGCAGCTAGCTTGATG 57.315 39.130 16.46 9.13 45.94 3.07
2164 3983 6.896021 ATTCAATAATGCAGCTAGCTTGAT 57.104 33.333 16.46 6.98 45.94 2.57
2165 3984 6.704289 AATTCAATAATGCAGCTAGCTTGA 57.296 33.333 16.46 11.78 45.94 3.02
2206 4025 7.951530 AACCAACTAATGCAATCTTTGAAAG 57.048 32.000 0.00 0.00 0.00 2.62
2221 4040 8.514594 CATTTCTAGATTCAGCAAACCAACTAA 58.485 33.333 0.00 0.00 0.00 2.24
2241 4060 8.526147 CATCTACCAAAACCAAATCTCATTTCT 58.474 33.333 0.00 0.00 0.00 2.52
2322 4381 7.792374 ATATCTACAGCAAACCAAGTGTATG 57.208 36.000 0.00 0.00 0.00 2.39
2357 4416 8.477419 AAAGGTGATCAAATTCTTAACAGGAA 57.523 30.769 0.00 0.00 0.00 3.36
2407 4516 0.035056 GGGTCCTTCATCCACACCTG 60.035 60.000 0.00 0.00 0.00 4.00
2478 4624 0.461339 TTTTCTATCGGTGGCGAGGC 60.461 55.000 0.00 0.00 0.00 4.70
2491 4637 1.737838 CACCATCCTGCGCTTTTCTA 58.262 50.000 9.73 0.00 0.00 2.10
2536 5187 0.400213 GGTGTTGTGATCCTCCACCA 59.600 55.000 13.17 0.00 43.96 4.17
2571 5728 5.456921 ACCATACCATTCCAGAAAGTGAT 57.543 39.130 0.00 0.00 0.00 3.06
2604 5764 1.005924 TCCATCTTTGAAAGGAGGGCC 59.994 52.381 4.94 0.00 33.95 5.80
2616 5779 3.347216 CAAATCCGTGACCTCCATCTTT 58.653 45.455 0.00 0.00 0.00 2.52
2633 5796 2.118951 AGCCTGGCCACTGCAAAT 59.881 55.556 21.35 1.78 40.13 2.32
2641 5805 0.998928 TAAAATCTCCAGCCTGGCCA 59.001 50.000 16.57 4.71 37.47 5.36
2644 5808 7.830099 ATTAAATCTAAAATCTCCAGCCTGG 57.170 36.000 3.69 3.69 39.43 4.45
2751 5916 7.146648 GGAGGGAGTATAAGTTAGAAACATCG 58.853 42.308 0.00 0.00 0.00 3.84
2769 5952 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2771 5954 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2772 5955 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2773 5956 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
2774 5957 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
2775 5958 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
2777 5960 5.334724 TCCTAAGACAAGTATTTCCGGAC 57.665 43.478 1.83 0.00 0.00 4.79
2778 5961 6.555463 ATTCCTAAGACAAGTATTTCCGGA 57.445 37.500 0.00 0.00 0.00 5.14
2780 5963 7.611213 ACAATTCCTAAGACAAGTATTTCCG 57.389 36.000 0.00 0.00 0.00 4.30
2781 5964 8.793592 ACAACAATTCCTAAGACAAGTATTTCC 58.206 33.333 0.00 0.00 0.00 3.13
2833 6057 9.271828 GTCTTAAAAATGGTTGAAAATGGATGT 57.728 29.630 0.00 0.00 0.00 3.06
2843 6067 9.974980 GGAAATACTTGTCTTAAAAATGGTTGA 57.025 29.630 0.00 0.00 0.00 3.18
2844 6068 8.911662 CGGAAATACTTGTCTTAAAAATGGTTG 58.088 33.333 0.00 0.00 0.00 3.77
2847 6071 7.753580 GTCCGGAAATACTTGTCTTAAAAATGG 59.246 37.037 5.23 0.00 0.00 3.16
2848 6072 7.480542 CGTCCGGAAATACTTGTCTTAAAAATG 59.519 37.037 5.23 0.00 0.00 2.32
2851 6075 5.409214 CCGTCCGGAAATACTTGTCTTAAAA 59.591 40.000 5.23 0.00 37.50 1.52
2855 6079 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
2860 6084 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2861 6085 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2862 6086 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2869 6093 0.822164 ACAAATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2871 6095 4.814771 CCATTAACAAATACTCCCTCCGTC 59.185 45.833 0.00 0.00 0.00 4.79
2872 6096 4.472108 TCCATTAACAAATACTCCCTCCGT 59.528 41.667 0.00 0.00 0.00 4.69
2873 6097 5.031066 TCCATTAACAAATACTCCCTCCG 57.969 43.478 0.00 0.00 0.00 4.63
2875 6099 5.132144 TCCCTCCATTAACAAATACTCCCTC 59.868 44.000 0.00 0.00 0.00 4.30
2876 6100 5.043762 TCCCTCCATTAACAAATACTCCCT 58.956 41.667 0.00 0.00 0.00 4.20
2877 6101 5.382664 TCCCTCCATTAACAAATACTCCC 57.617 43.478 0.00 0.00 0.00 4.30
2878 6102 5.241728 GCATCCCTCCATTAACAAATACTCC 59.758 44.000 0.00 0.00 0.00 3.85
2879 6103 6.064717 AGCATCCCTCCATTAACAAATACTC 58.935 40.000 0.00 0.00 0.00 2.59
2880 6104 6.018433 AGCATCCCTCCATTAACAAATACT 57.982 37.500 0.00 0.00 0.00 2.12
2881 6105 6.321181 TGAAGCATCCCTCCATTAACAAATAC 59.679 38.462 0.00 0.00 0.00 1.89
2889 6137 5.572271 GCTCATATGAAGCATCCCTCCATTA 60.572 44.000 17.16 0.00 0.00 1.90
2892 6140 2.039480 GCTCATATGAAGCATCCCTCCA 59.961 50.000 17.16 0.00 0.00 3.86
2937 6186 9.823647 TGGAGAGAAGTTATCACAAATAGATTC 57.176 33.333 0.00 0.00 0.00 2.52
2967 6217 4.853924 AAACATACAAAAGTGGCTCCAG 57.146 40.909 0.00 0.00 0.00 3.86
2968 6218 5.381757 AGTAAACATACAAAAGTGGCTCCA 58.618 37.500 0.00 0.00 0.00 3.86
2994 6244 5.084818 TGACAACATAGAATGGATCACGT 57.915 39.130 0.00 0.00 33.60 4.49
3001 6251 7.076842 ACGAGAATTTGACAACATAGAATGG 57.923 36.000 0.00 0.00 33.60 3.16
3050 6300 1.131126 GGCCATGATCAACGAACACAG 59.869 52.381 0.00 0.00 0.00 3.66
3160 6410 3.032265 AGGAGGCAACCTTTTCTTTGT 57.968 42.857 0.00 0.00 36.86 2.83
3187 6443 4.378459 GCTTGTGGTTAAGAATTGGACTCG 60.378 45.833 0.00 0.00 0.00 4.18
3195 6451 6.015940 CCTTGAAGAAGCTTGTGGTTAAGAAT 60.016 38.462 2.10 0.00 33.64 2.40
3214 6470 3.888323 TGTTGTTGCTGCTTATCCTTGAA 59.112 39.130 0.00 0.00 0.00 2.69
3250 6506 2.656560 AGTGCAGAGGATCGTGTAAC 57.343 50.000 0.00 0.00 42.67 2.50
3253 6509 3.449018 AGAAATAGTGCAGAGGATCGTGT 59.551 43.478 0.00 0.00 42.67 4.49
3270 6526 9.186837 AGTGAGATTATTCAGATTTGCAGAAAT 57.813 29.630 0.00 0.00 34.29 2.17
3274 6530 7.982224 TCAAGTGAGATTATTCAGATTTGCAG 58.018 34.615 0.00 0.00 0.00 4.41
3308 6564 6.824553 AGCTGTAGAGAAGATGATGCATTTA 58.175 36.000 0.00 0.00 0.00 1.40
3334 6655 6.716934 TCTGTTTTAACTTGTGGCCATTAA 57.283 33.333 9.72 6.97 0.00 1.40
3338 6659 6.719370 AGATTATCTGTTTTAACTTGTGGCCA 59.281 34.615 0.00 0.00 0.00 5.36
3379 6700 8.256605 CACAAGAAGAGAAGATAAAGGAGATCA 58.743 37.037 0.00 0.00 0.00 2.92
3382 6703 6.014242 TGCACAAGAAGAGAAGATAAAGGAGA 60.014 38.462 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.