Multiple sequence alignment - TraesCS1B01G464100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G464100 chr1B 100.000 4174 0 0 1 4174 675792520 675788347 0.000000e+00 7709.0
1 TraesCS1B01G464100 chr1B 93.587 499 26 5 3428 3920 626720286 626719788 0.000000e+00 739.0
2 TraesCS1B01G464100 chr1B 82.114 246 37 4 2314 2555 676064201 676064443 1.970000e-48 204.0
3 TraesCS1B01G464100 chr1D 93.994 2464 112 18 995 3441 485490293 485487849 0.000000e+00 3698.0
4 TraesCS1B01G464100 chr1D 83.498 303 47 2 2264 2566 485548181 485548480 3.180000e-71 279.0
5 TraesCS1B01G464100 chr1D 82.060 301 51 2 2265 2565 485555615 485555912 1.930000e-63 254.0
6 TraesCS1B01G464100 chr1D 81.145 297 51 4 2265 2560 485551929 485552221 2.510000e-57 233.0
7 TraesCS1B01G464100 chr1A 94.268 2198 102 12 972 3154 582695491 582693303 0.000000e+00 3339.0
8 TraesCS1B01G464100 chr1A 94.118 272 10 2 3908 4173 53994730 53994459 3.880000e-110 409.0
9 TraesCS1B01G464100 chr1A 90.226 266 20 4 3147 3411 582692113 582691853 4.000000e-90 342.0
10 TraesCS1B01G464100 chr1A 84.488 303 44 2 2264 2566 582855420 582855719 3.160000e-76 296.0
11 TraesCS1B01G464100 chr1A 82.838 303 49 3 2264 2566 582842303 582842602 6.880000e-68 268.0
12 TraesCS1B01G464100 chr1A 82.838 303 49 2 2264 2566 582845717 582846016 6.880000e-68 268.0
13 TraesCS1B01G464100 chr1A 82.450 302 50 3 2265 2566 582862957 582863255 1.150000e-65 261.0
14 TraesCS1B01G464100 chr1A 81.081 296 53 3 2265 2560 582859091 582859383 2.510000e-57 233.0
15 TraesCS1B01G464100 chr1A 86.047 129 9 4 487 614 555478463 555478343 3.390000e-26 130.0
16 TraesCS1B01G464100 chrUn 95.473 486 21 1 3436 3920 49013809 49014294 0.000000e+00 774.0
17 TraesCS1B01G464100 chrUn 93.750 272 11 2 3908 4173 81781155 81780884 1.810000e-108 403.0
18 TraesCS1B01G464100 chrUn 79.899 199 40 0 2276 2474 67469582 67469384 3.360000e-31 147.0
19 TraesCS1B01G464100 chr3A 94.747 495 21 5 3431 3920 692336773 692337267 0.000000e+00 765.0
20 TraesCS1B01G464100 chr2A 94.726 493 23 3 3431 3920 24395972 24395480 0.000000e+00 763.0
21 TraesCS1B01G464100 chr7A 94.479 489 24 3 3435 3920 130299817 130300305 0.000000e+00 750.0
22 TraesCS1B01G464100 chr7A 87.674 503 47 7 1 489 694068637 694068136 4.680000e-159 571.0
23 TraesCS1B01G464100 chr7A 93.750 272 11 2 3908 4173 110478084 110478355 1.810000e-108 403.0
24 TraesCS1B01G464100 chr7A 90.698 43 4 0 571 613 594164555 594164597 1.620000e-04 58.4
25 TraesCS1B01G464100 chr6A 94.661 487 21 4 3439 3920 446523718 446523232 0.000000e+00 750.0
26 TraesCS1B01G464100 chr6A 93.407 273 11 3 3908 4173 40582315 40582043 8.410000e-107 398.0
27 TraesCS1B01G464100 chr6A 93.040 273 12 3 3908 4173 60158853 60158581 3.910000e-105 392.0
28 TraesCS1B01G464100 chr6A 98.930 187 2 0 1 187 403561398 403561212 6.690000e-88 335.0
29 TraesCS1B01G464100 chr6A 98.930 187 2 0 1 187 403588658 403588472 6.690000e-88 335.0
30 TraesCS1B01G464100 chr6A 98.930 187 2 0 1 187 597540969 597540783 6.690000e-88 335.0
31 TraesCS1B01G464100 chr4A 94.467 488 24 3 3436 3920 609652605 609653092 0.000000e+00 749.0
32 TraesCS1B01G464100 chr4A 95.146 309 15 0 184 492 677156913 677156605 4.850000e-134 488.0
33 TraesCS1B01G464100 chr4A 93.040 273 12 3 3908 4173 520123618 520123890 3.910000e-105 392.0
34 TraesCS1B01G464100 chr4A 87.402 127 8 1 487 613 421026640 421026522 5.630000e-29 139.0
35 TraesCS1B01G464100 chr4A 83.594 128 12 4 487 613 600169617 600169498 1.230000e-20 111.0
36 TraesCS1B01G464100 chr3B 93.952 496 28 2 3426 3920 437813374 437812880 0.000000e+00 749.0
37 TraesCS1B01G464100 chr3B 96.117 309 12 0 184 492 811622821 811622513 4.820000e-139 505.0
38 TraesCS1B01G464100 chr3B 95.425 306 14 0 184 489 596607592 596607897 4.850000e-134 488.0
39 TraesCS1B01G464100 chr3B 93.796 274 9 5 3908 4173 829005718 829005991 5.020000e-109 405.0
40 TraesCS1B01G464100 chr3B 93.750 272 11 2 3908 4173 437812628 437812357 1.810000e-108 403.0
41 TraesCS1B01G464100 chr3B 93.382 272 12 2 3908 4173 100830097 100829826 8.410000e-107 398.0
42 TraesCS1B01G464100 chr3B 83.784 111 9 2 504 613 820860670 820860772 3.430000e-16 97.1
43 TraesCS1B01G464100 chr5A 94.057 488 26 3 3436 3920 126263546 126264033 0.000000e+00 737.0
44 TraesCS1B01G464100 chr5A 78.693 352 66 8 2266 2614 638068901 638068556 4.200000e-55 226.0
45 TraesCS1B01G464100 chr5A 84.800 125 11 1 487 611 11235973 11235857 7.330000e-23 119.0
46 TraesCS1B01G464100 chr7D 87.450 502 42 13 1 483 619015749 619015250 3.640000e-155 558.0
47 TraesCS1B01G464100 chr7D 85.938 128 9 2 487 613 83084919 83084800 1.220000e-25 128.0
48 TraesCS1B01G464100 chr7D 86.290 124 9 1 487 610 552343341 552343456 1.220000e-25 128.0
49 TraesCS1B01G464100 chr2B 96.405 306 11 0 184 489 722119648 722119953 4.820000e-139 505.0
50 TraesCS1B01G464100 chr2B 95.752 306 13 0 184 489 679275760 679276065 1.040000e-135 494.0
51 TraesCS1B01G464100 chr7B 95.793 309 13 0 184 492 726523537 726523229 2.240000e-137 499.0
52 TraesCS1B01G464100 chr7B 94.822 309 16 0 184 492 645573553 645573245 2.260000e-132 483.0
53 TraesCS1B01G464100 chr7B 95.098 306 15 0 184 489 722360696 722361001 2.260000e-132 483.0
54 TraesCS1B01G464100 chr7B 98.930 187 2 0 1 187 624076710 624076524 6.690000e-88 335.0
55 TraesCS1B01G464100 chr5B 94.822 309 16 0 184 492 10027162 10026854 2.260000e-132 483.0
56 TraesCS1B01G464100 chr5B 99.465 187 1 0 1 187 677311628 677311814 1.440000e-89 340.0
57 TraesCS1B01G464100 chr5B 80.972 247 40 6 2266 2510 641043561 641043802 5.510000e-44 189.0
58 TraesCS1B01G464100 chr4B 98.930 187 2 0 1 187 470027474 470027660 6.690000e-88 335.0
59 TraesCS1B01G464100 chr4B 98.930 187 2 0 1 187 514001031 514001217 6.690000e-88 335.0
60 TraesCS1B01G464100 chr4B 86.923 130 9 3 487 616 661166030 661165909 5.630000e-29 139.0
61 TraesCS1B01G464100 chr5D 83.203 256 36 6 2266 2519 510059166 510059416 1.170000e-55 228.0
62 TraesCS1B01G464100 chr5D 88.095 126 7 1 489 614 481765461 481765578 4.350000e-30 143.0
63 TraesCS1B01G464100 chr3D 88.372 129 6 3 487 614 45295543 45295663 3.360000e-31 147.0
64 TraesCS1B01G464100 chr6B 87.500 128 7 4 487 613 114933620 114933739 5.630000e-29 139.0
65 TraesCS1B01G464100 chr6D 85.965 114 7 2 504 616 462498137 462498032 3.410000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G464100 chr1B 675788347 675792520 4173 True 7709.000000 7709 100.000000 1 4174 1 chr1B.!!$R2 4173
1 TraesCS1B01G464100 chr1D 485487849 485490293 2444 True 3698.000000 3698 93.994000 995 3441 1 chr1D.!!$R1 2446
2 TraesCS1B01G464100 chr1D 485548181 485555912 7731 False 255.333333 279 82.234333 2264 2566 3 chr1D.!!$F1 302
3 TraesCS1B01G464100 chr1A 582691853 582695491 3638 True 1840.500000 3339 92.247000 972 3411 2 chr1A.!!$R3 2439
4 TraesCS1B01G464100 chr1A 582842303 582846016 3713 False 268.000000 268 82.838000 2264 2566 2 chr1A.!!$F1 302
5 TraesCS1B01G464100 chr1A 582855420 582863255 7835 False 263.333333 296 82.673000 2264 2566 3 chr1A.!!$F2 302
6 TraesCS1B01G464100 chr7A 694068136 694068637 501 True 571.000000 571 87.674000 1 489 1 chr7A.!!$R1 488
7 TraesCS1B01G464100 chr3B 437812357 437813374 1017 True 576.000000 749 93.851000 3426 4173 2 chr3B.!!$R3 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 665 0.032540 CCCTGTGAGGCAAAACAAGC 59.967 55.0 0.0 0.0 32.73 4.01 F
759 774 0.033405 TCCCCCTTACTGACGAGAGG 60.033 60.0 0.0 0.0 0.00 3.69 F
1178 1196 0.109342 GGGCGGAGATGGTGATCAAT 59.891 55.0 0.0 0.0 0.00 2.57 F
2241 2284 0.107456 CTCAATCCGGGGATGACCTG 59.893 60.0 0.0 0.0 45.92 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 1985 0.037232 CCGAGTTGGACTTGACCTCC 60.037 60.0 0.00 0.0 42.00 4.30 R
2222 2265 0.107456 CAGGTCATCCCCGGATTGAG 59.893 60.0 0.73 0.0 31.62 3.02 R
2582 11214 0.179134 GGAACCCGACGAGATCACTG 60.179 60.0 0.00 0.0 0.00 3.66 R
3536 13366 0.179100 CATCAGGCCAGTCCTACGTG 60.179 60.0 5.01 0.0 45.52 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 5.228665 TCGTCGTCGATATCATCTAGAACT 58.771 41.667 0.00 0.00 41.35 3.01
88 89 6.865205 TCGTCGTCGATATCATCTAGAACTAA 59.135 38.462 0.00 0.00 41.35 2.24
173 174 7.713750 TGAAATTGTTATCTAGTACTCCCTCG 58.286 38.462 0.00 0.00 0.00 4.63
175 176 4.785346 TGTTATCTAGTACTCCCTCGGT 57.215 45.455 0.00 0.00 0.00 4.69
176 177 5.121380 TGTTATCTAGTACTCCCTCGGTT 57.879 43.478 0.00 0.00 0.00 4.44
177 178 5.128919 TGTTATCTAGTACTCCCTCGGTTC 58.871 45.833 0.00 0.00 0.00 3.62
178 179 2.725221 TCTAGTACTCCCTCGGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
181 182 2.019807 AGTACTCCCTCGGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
184 185 4.098894 AGTACTCCCTCGGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
185 186 3.345508 ACTCCCTCGGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
186 187 2.910977 ACTCCCTCGGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
249 250 6.808321 AGTACCTAGTATCTGGAAATTGCA 57.192 37.500 0.00 0.00 0.00 4.08
260 261 9.294030 GTATCTGGAAATTGCAGTTTATTGAAG 57.706 33.333 14.00 2.06 37.12 3.02
264 265 5.349543 GGAAATTGCAGTTTATTGAAGCTGG 59.650 40.000 7.22 0.00 42.47 4.85
267 268 5.726980 TTGCAGTTTATTGAAGCTGGAAT 57.273 34.783 4.76 0.00 45.03 3.01
270 285 4.678840 GCAGTTTATTGAAGCTGGAATGGG 60.679 45.833 4.10 0.00 42.47 4.00
277 292 1.758862 GAAGCTGGAATGGGGAAATGG 59.241 52.381 0.00 0.00 0.00 3.16
289 304 7.508977 GGAATGGGGAAATGGTGAAAGATATAA 59.491 37.037 0.00 0.00 0.00 0.98
297 312 9.109393 GAAATGGTGAAAGATATAACAGTAGCA 57.891 33.333 0.00 0.00 0.00 3.49
302 317 3.662247 AGATATAACAGTAGCACGGGC 57.338 47.619 0.00 0.00 41.61 6.13
319 334 1.576356 GGCTCAGGAAATCGCTACAG 58.424 55.000 0.00 0.00 0.00 2.74
324 339 4.046938 TCAGGAAATCGCTACAGCTAAG 57.953 45.455 0.00 0.00 39.32 2.18
341 356 3.667726 GCTAAGTAATAGTAGCGCGTTCC 59.332 47.826 8.43 0.00 33.90 3.62
353 368 2.145905 GCGTTCCGAAAATGCGCTG 61.146 57.895 9.73 0.00 44.00 5.18
356 371 0.794605 GTTCCGAAAATGCGCTGCTC 60.795 55.000 9.73 0.00 0.00 4.26
360 375 1.265095 CCGAAAATGCGCTGCTCATAT 59.735 47.619 9.73 0.00 0.00 1.78
365 380 3.391506 AATGCGCTGCTCATATAGTCA 57.608 42.857 9.73 0.00 0.00 3.41
367 382 3.391506 TGCGCTGCTCATATAGTCAAT 57.608 42.857 9.73 0.00 0.00 2.57
368 383 3.062042 TGCGCTGCTCATATAGTCAATG 58.938 45.455 9.73 0.00 0.00 2.82
369 384 2.414481 GCGCTGCTCATATAGTCAATGG 59.586 50.000 0.00 0.00 0.00 3.16
377 392 6.493458 TGCTCATATAGTCAATGGTAGTAGCA 59.507 38.462 4.19 4.19 30.95 3.49
380 395 2.961526 AGTCAATGGTAGTAGCACGG 57.038 50.000 3.73 0.01 0.00 4.94
389 404 2.086869 GTAGTAGCACGGGTACAGACA 58.913 52.381 13.31 0.00 38.76 3.41
390 405 1.624336 AGTAGCACGGGTACAGACAA 58.376 50.000 13.31 0.00 38.76 3.18
409 424 6.741811 CAGACAACGCTACTACTAACAGTTAG 59.258 42.308 17.48 17.48 39.18 2.34
435 450 4.043168 CCTTATTGGTAGCGCGGG 57.957 61.111 8.83 0.00 0.00 6.13
456 471 2.506061 CCCGAGCTGCTGATAGCCT 61.506 63.158 7.01 0.00 44.76 4.58
484 499 2.417787 CCGCGCTACTACTAGGGTTTTT 60.418 50.000 5.56 0.00 35.73 1.94
489 504 5.586339 CGCTACTACTAGGGTTTTTCCTAC 58.414 45.833 0.00 0.00 38.30 3.18
490 505 5.359292 CGCTACTACTAGGGTTTTTCCTACT 59.641 44.000 0.00 0.00 38.30 2.57
491 506 6.543831 CGCTACTACTAGGGTTTTTCCTACTA 59.456 42.308 0.00 0.00 38.30 1.82
492 507 7.230309 CGCTACTACTAGGGTTTTTCCTACTAT 59.770 40.741 0.00 0.00 38.30 2.12
493 508 8.575589 GCTACTACTAGGGTTTTTCCTACTATC 58.424 40.741 0.00 0.00 38.30 2.08
494 509 9.638176 CTACTACTAGGGTTTTTCCTACTATCA 57.362 37.037 0.00 0.00 38.30 2.15
495 510 8.906238 ACTACTAGGGTTTTTCCTACTATCAA 57.094 34.615 0.00 0.00 38.30 2.57
496 511 8.756927 ACTACTAGGGTTTTTCCTACTATCAAC 58.243 37.037 0.00 0.00 38.30 3.18
497 512 7.809880 ACTAGGGTTTTTCCTACTATCAACT 57.190 36.000 0.00 0.00 38.30 3.16
498 513 8.215954 ACTAGGGTTTTTCCTACTATCAACTT 57.784 34.615 0.00 0.00 38.30 2.66
499 514 9.330220 ACTAGGGTTTTTCCTACTATCAACTTA 57.670 33.333 0.00 0.00 38.30 2.24
500 515 9.819267 CTAGGGTTTTTCCTACTATCAACTTAG 57.181 37.037 0.00 0.00 38.30 2.18
501 516 8.215954 AGGGTTTTTCCTACTATCAACTTAGT 57.784 34.615 0.00 0.00 34.92 2.24
502 517 8.666821 AGGGTTTTTCCTACTATCAACTTAGTT 58.333 33.333 0.00 0.00 34.92 2.24
503 518 8.727910 GGGTTTTTCCTACTATCAACTTAGTTG 58.272 37.037 18.12 18.12 39.31 3.16
504 519 9.281371 GGTTTTTCCTACTATCAACTTAGTTGT 57.719 33.333 22.36 13.36 43.23 3.32
507 522 9.649167 TTTTCCTACTATCAACTTAGTTGTAGC 57.351 33.333 22.36 0.00 43.23 3.58
508 523 7.024340 TCCTACTATCAACTTAGTTGTAGCG 57.976 40.000 22.36 15.91 43.23 4.26
509 524 6.039047 TCCTACTATCAACTTAGTTGTAGCGG 59.961 42.308 22.36 21.38 43.23 5.52
510 525 5.007385 ACTATCAACTTAGTTGTAGCGGG 57.993 43.478 22.36 11.47 43.23 6.13
511 526 2.754946 TCAACTTAGTTGTAGCGGGG 57.245 50.000 22.36 0.00 43.23 5.73
512 527 1.276989 TCAACTTAGTTGTAGCGGGGG 59.723 52.381 22.36 0.00 43.23 5.40
513 528 1.002773 CAACTTAGTTGTAGCGGGGGT 59.997 52.381 16.22 0.00 38.56 4.95
514 529 2.234414 CAACTTAGTTGTAGCGGGGGTA 59.766 50.000 16.22 0.00 38.56 3.69
515 530 2.755686 ACTTAGTTGTAGCGGGGGTAT 58.244 47.619 0.00 0.00 0.00 2.73
516 531 3.914771 ACTTAGTTGTAGCGGGGGTATA 58.085 45.455 0.00 0.00 0.00 1.47
517 532 4.289245 ACTTAGTTGTAGCGGGGGTATAA 58.711 43.478 0.00 0.00 0.00 0.98
518 533 4.716287 ACTTAGTTGTAGCGGGGGTATAAA 59.284 41.667 0.00 0.00 0.00 1.40
519 534 3.548745 AGTTGTAGCGGGGGTATAAAC 57.451 47.619 0.00 0.00 0.00 2.01
520 535 2.171237 AGTTGTAGCGGGGGTATAAACC 59.829 50.000 0.00 0.00 45.97 3.27
529 544 3.974222 GGTATAAACCCGCGCTACT 57.026 52.632 5.56 0.00 40.21 2.57
531 546 2.938869 GGTATAAACCCGCGCTACTAG 58.061 52.381 5.56 0.00 40.21 2.57
532 547 2.294512 GGTATAAACCCGCGCTACTAGT 59.705 50.000 5.56 0.00 40.21 2.57
533 548 3.502211 GGTATAAACCCGCGCTACTAGTA 59.498 47.826 5.56 1.89 40.21 1.82
534 549 4.023193 GGTATAAACCCGCGCTACTAGTAA 60.023 45.833 5.56 0.00 40.21 2.24
535 550 2.573941 AAACCCGCGCTACTAGTAAG 57.426 50.000 5.56 2.60 0.00 2.34
536 551 1.467920 AACCCGCGCTACTAGTAAGT 58.532 50.000 5.56 0.00 39.91 2.24
537 552 2.332063 ACCCGCGCTACTAGTAAGTA 57.668 50.000 5.56 0.00 37.15 2.24
548 563 6.456447 CTACTAGTAAGTAGCTGTAGCGAG 57.544 45.833 3.76 0.00 46.53 5.03
549 564 5.295950 TACTAGTAAGTAGCTGTAGCGAGG 58.704 45.833 0.00 0.00 40.69 4.63
550 565 5.741383 TACTAGTAAGTAGCTGTAGCGAGGG 60.741 48.000 0.00 0.00 40.69 4.30
551 566 8.638444 TACTAGTAAGTAGCTGTAGCGAGGGG 62.638 50.000 0.00 0.00 40.69 4.79
558 573 2.752121 GCTGTAGCGAGGGGTATAAAC 58.248 52.381 0.00 0.00 0.00 2.01
559 574 2.547430 GCTGTAGCGAGGGGTATAAACC 60.547 54.545 0.00 0.00 45.97 3.27
567 582 2.592574 GGTATAAACCCGCCCGGC 60.593 66.667 0.00 0.00 40.21 6.13
568 583 2.592574 GTATAAACCCGCCCGGCC 60.593 66.667 3.10 0.00 33.26 6.13
569 584 3.088561 TATAAACCCGCCCGGCCA 61.089 61.111 2.24 0.00 33.26 5.36
570 585 3.403593 TATAAACCCGCCCGGCCAC 62.404 63.158 2.24 0.00 33.26 5.01
584 599 3.889780 GCCACGCCACTAATAAACG 57.110 52.632 0.00 0.00 0.00 3.60
585 600 1.081094 GCCACGCCACTAATAAACGT 58.919 50.000 0.00 0.00 37.47 3.99
586 601 1.061566 GCCACGCCACTAATAAACGTC 59.938 52.381 0.00 0.00 34.19 4.34
587 602 2.613691 CCACGCCACTAATAAACGTCT 58.386 47.619 0.00 0.00 34.19 4.18
588 603 3.772932 CCACGCCACTAATAAACGTCTA 58.227 45.455 0.00 0.00 34.19 2.59
589 604 3.549070 CCACGCCACTAATAAACGTCTAC 59.451 47.826 0.00 0.00 34.19 2.59
590 605 3.549070 CACGCCACTAATAAACGTCTACC 59.451 47.826 0.00 0.00 34.19 3.18
591 606 3.445096 ACGCCACTAATAAACGTCTACCT 59.555 43.478 0.00 0.00 29.64 3.08
592 607 4.640201 ACGCCACTAATAAACGTCTACCTA 59.360 41.667 0.00 0.00 29.64 3.08
593 608 5.300286 ACGCCACTAATAAACGTCTACCTAT 59.700 40.000 0.00 0.00 29.64 2.57
594 609 6.486657 ACGCCACTAATAAACGTCTACCTATA 59.513 38.462 0.00 0.00 29.64 1.31
595 610 7.013274 ACGCCACTAATAAACGTCTACCTATAA 59.987 37.037 0.00 0.00 29.64 0.98
596 611 7.536622 CGCCACTAATAAACGTCTACCTATAAG 59.463 40.741 0.00 0.00 0.00 1.73
597 612 7.328005 GCCACTAATAAACGTCTACCTATAAGC 59.672 40.741 0.00 0.00 0.00 3.09
598 613 8.574737 CCACTAATAAACGTCTACCTATAAGCT 58.425 37.037 0.00 0.00 0.00 3.74
599 614 9.962783 CACTAATAAACGTCTACCTATAAGCTT 57.037 33.333 3.48 3.48 0.00 3.74
604 619 9.747293 ATAAACGTCTACCTATAAGCTTTTCTC 57.253 33.333 3.20 0.00 0.00 2.87
605 620 7.407393 AACGTCTACCTATAAGCTTTTCTCT 57.593 36.000 3.20 0.00 0.00 3.10
606 621 8.517062 AACGTCTACCTATAAGCTTTTCTCTA 57.483 34.615 3.20 0.00 0.00 2.43
607 622 8.156994 ACGTCTACCTATAAGCTTTTCTCTAG 57.843 38.462 3.20 0.00 0.00 2.43
608 623 7.774625 ACGTCTACCTATAAGCTTTTCTCTAGT 59.225 37.037 3.20 0.00 0.00 2.57
609 624 9.270640 CGTCTACCTATAAGCTTTTCTCTAGTA 57.729 37.037 3.20 0.00 0.00 1.82
613 628 7.718525 ACCTATAAGCTTTTCTCTAGTAGTGC 58.281 38.462 3.20 0.00 0.00 4.40
614 629 7.562088 ACCTATAAGCTTTTCTCTAGTAGTGCT 59.438 37.037 3.20 0.00 0.00 4.40
615 630 9.069082 CCTATAAGCTTTTCTCTAGTAGTGCTA 57.931 37.037 3.20 0.00 0.00 3.49
618 633 6.844097 AGCTTTTCTCTAGTAGTGCTAACT 57.156 37.500 0.00 0.00 40.67 2.24
619 634 7.234661 AGCTTTTCTCTAGTAGTGCTAACTT 57.765 36.000 0.00 0.00 37.88 2.66
620 635 7.093992 AGCTTTTCTCTAGTAGTGCTAACTTG 58.906 38.462 0.00 0.00 37.88 3.16
621 636 6.183360 GCTTTTCTCTAGTAGTGCTAACTTGC 60.183 42.308 0.00 0.00 37.88 4.01
622 637 5.977489 TTCTCTAGTAGTGCTAACTTGCA 57.023 39.130 0.00 0.00 41.05 4.08
628 643 3.047280 TGCTAACTTGCACCCGCG 61.047 61.111 0.00 0.00 42.97 6.46
629 644 3.799755 GCTAACTTGCACCCGCGG 61.800 66.667 21.04 21.04 42.97 6.46
630 645 3.799755 CTAACTTGCACCCGCGGC 61.800 66.667 22.85 9.65 42.97 6.53
647 662 4.597032 CCCCTGTGAGGCAAAACA 57.403 55.556 0.00 0.00 32.73 2.83
648 663 2.819477 CCCCTGTGAGGCAAAACAA 58.181 52.632 0.00 0.00 32.73 2.83
649 664 0.675633 CCCCTGTGAGGCAAAACAAG 59.324 55.000 0.00 0.00 32.73 3.16
650 665 0.032540 CCCTGTGAGGCAAAACAAGC 59.967 55.000 0.00 0.00 32.73 4.01
651 666 0.746063 CCTGTGAGGCAAAACAAGCA 59.254 50.000 0.00 0.00 0.00 3.91
652 667 1.536709 CCTGTGAGGCAAAACAAGCAC 60.537 52.381 0.00 0.00 0.00 4.40
653 668 0.459489 TGTGAGGCAAAACAAGCACC 59.541 50.000 0.00 0.00 0.00 5.01
654 669 0.249447 GTGAGGCAAAACAAGCACCC 60.249 55.000 0.00 0.00 0.00 4.61
655 670 0.396974 TGAGGCAAAACAAGCACCCT 60.397 50.000 0.00 0.00 0.00 4.34
656 671 0.315251 GAGGCAAAACAAGCACCCTC 59.685 55.000 0.00 0.00 32.93 4.30
657 672 0.106015 AGGCAAAACAAGCACCCTCT 60.106 50.000 0.00 0.00 0.00 3.69
658 673 0.315251 GGCAAAACAAGCACCCTCTC 59.685 55.000 0.00 0.00 0.00 3.20
659 674 1.322442 GCAAAACAAGCACCCTCTCT 58.678 50.000 0.00 0.00 0.00 3.10
660 675 2.504367 GCAAAACAAGCACCCTCTCTA 58.496 47.619 0.00 0.00 0.00 2.43
661 676 2.226674 GCAAAACAAGCACCCTCTCTAC 59.773 50.000 0.00 0.00 0.00 2.59
662 677 3.744660 CAAAACAAGCACCCTCTCTACT 58.255 45.455 0.00 0.00 0.00 2.57
663 678 4.137543 CAAAACAAGCACCCTCTCTACTT 58.862 43.478 0.00 0.00 0.00 2.24
664 679 3.686916 AACAAGCACCCTCTCTACTTC 57.313 47.619 0.00 0.00 0.00 3.01
665 680 2.609747 ACAAGCACCCTCTCTACTTCA 58.390 47.619 0.00 0.00 0.00 3.02
666 681 3.177228 ACAAGCACCCTCTCTACTTCAT 58.823 45.455 0.00 0.00 0.00 2.57
667 682 4.353777 ACAAGCACCCTCTCTACTTCATA 58.646 43.478 0.00 0.00 0.00 2.15
668 683 4.404073 ACAAGCACCCTCTCTACTTCATAG 59.596 45.833 0.00 0.00 0.00 2.23
669 684 4.528076 AGCACCCTCTCTACTTCATAGA 57.472 45.455 0.00 0.00 37.60 1.98
681 696 7.187824 TCTACTTCATAGAGTTTCATTGCCT 57.812 36.000 0.00 0.00 34.80 4.75
682 697 7.624549 TCTACTTCATAGAGTTTCATTGCCTT 58.375 34.615 0.00 0.00 34.80 4.35
683 698 8.103305 TCTACTTCATAGAGTTTCATTGCCTTT 58.897 33.333 0.00 0.00 34.80 3.11
684 699 7.150783 ACTTCATAGAGTTTCATTGCCTTTC 57.849 36.000 0.00 0.00 0.00 2.62
685 700 5.801350 TCATAGAGTTTCATTGCCTTTCG 57.199 39.130 0.00 0.00 0.00 3.46
686 701 2.997485 AGAGTTTCATTGCCTTTCGC 57.003 45.000 0.00 0.00 38.31 4.70
687 702 1.541588 AGAGTTTCATTGCCTTTCGCC 59.458 47.619 0.00 0.00 36.24 5.54
688 703 0.240945 AGTTTCATTGCCTTTCGCCG 59.759 50.000 0.00 0.00 36.24 6.46
689 704 0.732538 GTTTCATTGCCTTTCGCCGG 60.733 55.000 0.00 0.00 36.24 6.13
690 705 1.175983 TTTCATTGCCTTTCGCCGGT 61.176 50.000 1.90 0.00 36.24 5.28
691 706 1.861542 TTCATTGCCTTTCGCCGGTG 61.862 55.000 9.28 9.28 36.24 4.94
692 707 2.282180 ATTGCCTTTCGCCGGTGT 60.282 55.556 16.01 0.00 36.24 4.16
693 708 2.332654 ATTGCCTTTCGCCGGTGTC 61.333 57.895 16.01 1.31 36.24 3.67
696 711 3.110178 CCTTTCGCCGGTGTCGAC 61.110 66.667 16.01 9.11 39.00 4.20
697 712 3.467119 CTTTCGCCGGTGTCGACG 61.467 66.667 16.01 2.25 43.35 5.12
717 732 3.234730 GGTCCGCCTCATCCCGAT 61.235 66.667 0.00 0.00 0.00 4.18
718 733 2.029666 GTCCGCCTCATCCCGATG 59.970 66.667 0.00 0.00 40.09 3.84
719 734 3.233980 TCCGCCTCATCCCGATGG 61.234 66.667 4.90 0.00 39.24 3.51
720 735 4.996434 CCGCCTCATCCCGATGGC 62.996 72.222 4.90 0.95 41.76 4.40
721 736 4.996434 CGCCTCATCCCGATGGCC 62.996 72.222 0.00 0.00 42.15 5.36
722 737 3.564218 GCCTCATCCCGATGGCCT 61.564 66.667 3.32 0.00 39.49 5.19
723 738 3.125376 GCCTCATCCCGATGGCCTT 62.125 63.158 3.32 0.00 39.49 4.35
724 739 1.768684 GCCTCATCCCGATGGCCTTA 61.769 60.000 3.32 0.00 39.49 2.69
725 740 0.035458 CCTCATCCCGATGGCCTTAC 59.965 60.000 3.32 0.00 39.24 2.34
726 741 0.319900 CTCATCCCGATGGCCTTACG 60.320 60.000 3.32 7.07 39.24 3.18
727 742 1.301716 CATCCCGATGGCCTTACGG 60.302 63.158 22.14 22.14 45.24 4.02
745 760 2.192175 CCATAACGGCACTCCCCC 59.808 66.667 0.00 0.00 0.00 5.40
746 761 2.375345 CCATAACGGCACTCCCCCT 61.375 63.158 0.00 0.00 0.00 4.79
747 762 1.607612 CATAACGGCACTCCCCCTT 59.392 57.895 0.00 0.00 0.00 3.95
748 763 0.834612 CATAACGGCACTCCCCCTTA 59.165 55.000 0.00 0.00 0.00 2.69
749 764 0.835276 ATAACGGCACTCCCCCTTAC 59.165 55.000 0.00 0.00 0.00 2.34
750 765 0.252375 TAACGGCACTCCCCCTTACT 60.252 55.000 0.00 0.00 0.00 2.24
751 766 1.838073 AACGGCACTCCCCCTTACTG 61.838 60.000 0.00 0.00 0.00 2.74
752 767 1.987855 CGGCACTCCCCCTTACTGA 60.988 63.158 0.00 0.00 0.00 3.41
753 768 1.602771 GGCACTCCCCCTTACTGAC 59.397 63.158 0.00 0.00 0.00 3.51
754 769 1.218316 GCACTCCCCCTTACTGACG 59.782 63.158 0.00 0.00 0.00 4.35
755 770 1.255667 GCACTCCCCCTTACTGACGA 61.256 60.000 0.00 0.00 0.00 4.20
756 771 0.818296 CACTCCCCCTTACTGACGAG 59.182 60.000 0.00 0.00 0.00 4.18
757 772 0.702902 ACTCCCCCTTACTGACGAGA 59.297 55.000 0.00 0.00 0.00 4.04
758 773 1.341187 ACTCCCCCTTACTGACGAGAG 60.341 57.143 0.00 0.00 0.00 3.20
759 774 0.033405 TCCCCCTTACTGACGAGAGG 60.033 60.000 0.00 0.00 0.00 3.69
760 775 0.033405 CCCCCTTACTGACGAGAGGA 60.033 60.000 0.00 0.00 0.00 3.71
761 776 1.104630 CCCCTTACTGACGAGAGGAC 58.895 60.000 0.00 0.00 0.00 3.85
762 777 1.341187 CCCCTTACTGACGAGAGGACT 60.341 57.143 0.00 0.00 0.00 3.85
763 778 2.448453 CCCTTACTGACGAGAGGACTT 58.552 52.381 0.00 0.00 0.00 3.01
764 779 2.424246 CCCTTACTGACGAGAGGACTTC 59.576 54.545 0.00 0.00 0.00 3.01
765 780 2.096174 CCTTACTGACGAGAGGACTTCG 59.904 54.545 0.00 0.00 0.00 3.79
766 781 2.469274 TACTGACGAGAGGACTTCGT 57.531 50.000 0.00 0.00 43.13 3.85
767 782 1.606903 ACTGACGAGAGGACTTCGTT 58.393 50.000 1.63 0.00 40.37 3.85
768 783 1.955080 ACTGACGAGAGGACTTCGTTT 59.045 47.619 1.63 0.00 40.37 3.60
769 784 2.361438 ACTGACGAGAGGACTTCGTTTT 59.639 45.455 1.63 0.00 40.37 2.43
770 785 3.181478 ACTGACGAGAGGACTTCGTTTTT 60.181 43.478 1.63 0.00 40.37 1.94
771 786 4.037208 ACTGACGAGAGGACTTCGTTTTTA 59.963 41.667 1.63 0.00 40.37 1.52
772 787 4.543692 TGACGAGAGGACTTCGTTTTTAG 58.456 43.478 1.63 0.00 40.37 1.85
773 788 4.276678 TGACGAGAGGACTTCGTTTTTAGA 59.723 41.667 1.63 0.00 40.37 2.10
774 789 4.544651 ACGAGAGGACTTCGTTTTTAGAC 58.455 43.478 0.00 0.00 36.67 2.59
775 790 3.602915 CGAGAGGACTTCGTTTTTAGACG 59.397 47.826 0.00 0.00 44.06 4.18
776 791 4.544651 GAGAGGACTTCGTTTTTAGACGT 58.455 43.478 0.00 0.00 43.23 4.34
777 792 4.941657 AGAGGACTTCGTTTTTAGACGTT 58.058 39.130 0.00 0.00 43.23 3.99
778 793 4.981054 AGAGGACTTCGTTTTTAGACGTTC 59.019 41.667 0.00 0.00 43.23 3.95
779 794 4.053983 AGGACTTCGTTTTTAGACGTTCC 58.946 43.478 0.00 0.00 43.23 3.62
780 795 4.053983 GGACTTCGTTTTTAGACGTTCCT 58.946 43.478 0.00 0.00 43.23 3.36
781 796 4.509230 GGACTTCGTTTTTAGACGTTCCTT 59.491 41.667 0.00 0.00 43.23 3.36
782 797 5.332883 GGACTTCGTTTTTAGACGTTCCTTC 60.333 44.000 0.00 0.00 43.23 3.46
783 798 5.111293 ACTTCGTTTTTAGACGTTCCTTCA 58.889 37.500 0.00 0.00 43.23 3.02
784 799 5.233689 ACTTCGTTTTTAGACGTTCCTTCAG 59.766 40.000 0.00 0.00 43.23 3.02
785 800 4.935702 TCGTTTTTAGACGTTCCTTCAGA 58.064 39.130 0.00 0.00 43.23 3.27
786 801 5.535333 TCGTTTTTAGACGTTCCTTCAGAT 58.465 37.500 0.00 0.00 43.23 2.90
787 802 5.987347 TCGTTTTTAGACGTTCCTTCAGATT 59.013 36.000 0.00 0.00 43.23 2.40
788 803 6.480981 TCGTTTTTAGACGTTCCTTCAGATTT 59.519 34.615 0.00 0.00 43.23 2.17
789 804 6.573725 CGTTTTTAGACGTTCCTTCAGATTTG 59.426 38.462 0.00 0.00 38.19 2.32
790 805 7.517734 CGTTTTTAGACGTTCCTTCAGATTTGA 60.518 37.037 0.00 0.00 38.19 2.69
791 806 7.979444 TTTTAGACGTTCCTTCAGATTTGAT 57.021 32.000 0.00 0.00 32.27 2.57
792 807 6.968131 TTAGACGTTCCTTCAGATTTGATG 57.032 37.500 0.00 0.00 32.27 3.07
793 808 4.256920 AGACGTTCCTTCAGATTTGATGG 58.743 43.478 10.96 10.96 45.49 3.51
794 809 3.347216 ACGTTCCTTCAGATTTGATGGG 58.653 45.455 15.67 8.37 44.68 4.00
795 810 3.009033 ACGTTCCTTCAGATTTGATGGGA 59.991 43.478 15.67 6.68 44.68 4.37
796 811 3.375299 CGTTCCTTCAGATTTGATGGGAC 59.625 47.826 16.07 16.07 46.50 4.46
797 812 3.266510 TCCTTCAGATTTGATGGGACG 57.733 47.619 15.67 0.00 44.68 4.79
798 813 1.672881 CCTTCAGATTTGATGGGACGC 59.327 52.381 9.66 0.00 42.24 5.19
799 814 2.358957 CTTCAGATTTGATGGGACGCA 58.641 47.619 0.00 0.00 32.27 5.24
800 815 2.715749 TCAGATTTGATGGGACGCAT 57.284 45.000 4.41 4.41 0.00 4.73
801 816 2.564771 TCAGATTTGATGGGACGCATC 58.435 47.619 22.14 22.14 0.00 3.91
802 817 1.262417 CAGATTTGATGGGACGCATCG 59.738 52.381 22.98 7.89 32.04 3.84
803 818 1.138859 AGATTTGATGGGACGCATCGA 59.861 47.619 22.98 19.85 32.04 3.59
804 819 2.146342 GATTTGATGGGACGCATCGAT 58.854 47.619 22.98 19.33 32.04 3.59
805 820 1.298602 TTTGATGGGACGCATCGATG 58.701 50.000 21.27 21.27 32.04 3.84
806 821 0.532640 TTGATGGGACGCATCGATGG 60.533 55.000 26.00 17.84 32.04 3.51
807 822 2.281070 ATGGGACGCATCGATGGC 60.281 61.111 26.00 16.78 0.00 4.40
808 823 3.832237 ATGGGACGCATCGATGGCC 62.832 63.158 26.00 13.22 0.00 5.36
809 824 4.241555 GGGACGCATCGATGGCCT 62.242 66.667 26.00 8.91 0.00 5.19
810 825 2.663188 GGACGCATCGATGGCCTC 60.663 66.667 26.00 15.87 0.00 4.70
811 826 2.663188 GACGCATCGATGGCCTCC 60.663 66.667 26.00 8.58 0.00 4.30
812 827 4.592192 ACGCATCGATGGCCTCCG 62.592 66.667 26.00 21.12 0.00 4.63
815 830 4.284860 CATCGATGGCCTCCGCGA 62.285 66.667 17.96 8.31 37.35 5.87
816 831 4.286320 ATCGATGGCCTCCGCGAC 62.286 66.667 8.23 0.00 36.21 5.19
819 834 4.241555 GATGGCCTCCGCGACCAT 62.242 66.667 18.55 18.55 46.82 3.55
820 835 4.241555 ATGGCCTCCGCGACCATC 62.242 66.667 8.23 0.00 40.14 3.51
822 837 4.899239 GGCCTCCGCGACCATCTG 62.899 72.222 8.23 0.00 35.02 2.90
823 838 3.838271 GCCTCCGCGACCATCTGA 61.838 66.667 8.23 0.00 0.00 3.27
824 839 3.133014 CCTCCGCGACCATCTGAT 58.867 61.111 8.23 0.00 0.00 2.90
825 840 1.006805 CCTCCGCGACCATCTGATC 60.007 63.158 8.23 0.00 0.00 2.92
826 841 1.459455 CCTCCGCGACCATCTGATCT 61.459 60.000 8.23 0.00 0.00 2.75
827 842 0.318529 CTCCGCGACCATCTGATCTG 60.319 60.000 8.23 0.00 0.00 2.90
828 843 0.751643 TCCGCGACCATCTGATCTGA 60.752 55.000 8.23 4.63 0.00 3.27
829 844 0.316522 CCGCGACCATCTGATCTGAT 59.683 55.000 8.23 9.15 0.00 2.90
830 845 1.269988 CCGCGACCATCTGATCTGATT 60.270 52.381 8.23 0.00 0.00 2.57
831 846 2.029918 CCGCGACCATCTGATCTGATTA 60.030 50.000 8.23 0.00 0.00 1.75
832 847 2.983136 CGCGACCATCTGATCTGATTAC 59.017 50.000 12.05 6.41 0.00 1.89
833 848 3.304996 CGCGACCATCTGATCTGATTACT 60.305 47.826 12.05 0.00 0.00 2.24
834 849 4.233789 GCGACCATCTGATCTGATTACTC 58.766 47.826 12.05 6.60 0.00 2.59
835 850 4.471373 CGACCATCTGATCTGATTACTCG 58.529 47.826 12.05 13.22 0.00 4.18
836 851 4.023622 CGACCATCTGATCTGATTACTCGT 60.024 45.833 12.05 4.58 0.00 4.18
837 852 5.193663 ACCATCTGATCTGATTACTCGTG 57.806 43.478 12.05 1.90 0.00 4.35
838 853 4.646945 ACCATCTGATCTGATTACTCGTGT 59.353 41.667 12.05 0.00 0.00 4.49
839 854 4.981054 CCATCTGATCTGATTACTCGTGTG 59.019 45.833 12.05 0.59 0.00 3.82
840 855 4.639135 TCTGATCTGATTACTCGTGTGG 57.361 45.455 0.00 0.00 0.00 4.17
841 856 4.270008 TCTGATCTGATTACTCGTGTGGA 58.730 43.478 0.00 0.00 0.00 4.02
842 857 4.889995 TCTGATCTGATTACTCGTGTGGAT 59.110 41.667 0.00 0.00 0.00 3.41
843 858 5.009110 TCTGATCTGATTACTCGTGTGGATC 59.991 44.000 0.00 4.89 0.00 3.36
844 859 3.692791 TCTGATTACTCGTGTGGATCG 57.307 47.619 0.00 2.23 0.00 3.69
845 860 2.120232 CTGATTACTCGTGTGGATCGC 58.880 52.381 0.00 0.00 0.00 4.58
846 861 1.202371 TGATTACTCGTGTGGATCGCC 60.202 52.381 0.00 0.00 0.00 5.54
847 862 1.067212 GATTACTCGTGTGGATCGCCT 59.933 52.381 0.00 0.00 34.31 5.52
848 863 0.454600 TTACTCGTGTGGATCGCCTC 59.545 55.000 0.00 0.00 34.31 4.70
849 864 1.712018 TACTCGTGTGGATCGCCTCG 61.712 60.000 0.00 0.00 34.31 4.63
850 865 3.052620 CTCGTGTGGATCGCCTCGT 62.053 63.158 5.14 0.00 34.31 4.18
851 866 2.880879 CGTGTGGATCGCCTCGTG 60.881 66.667 0.00 0.00 34.31 4.35
852 867 3.188786 GTGTGGATCGCCTCGTGC 61.189 66.667 0.00 0.00 34.31 5.34
853 868 4.451150 TGTGGATCGCCTCGTGCC 62.451 66.667 0.00 0.00 36.24 5.01
856 871 4.286320 GGATCGCCTCGTGCCGAT 62.286 66.667 2.76 2.76 36.42 4.18
857 872 2.279517 GATCGCCTCGTGCCGATT 60.280 61.111 4.79 0.00 34.75 3.34
858 873 2.279517 ATCGCCTCGTGCCGATTC 60.280 61.111 0.00 0.00 34.61 2.52
859 874 4.847516 TCGCCTCGTGCCGATTCG 62.848 66.667 0.00 0.00 34.61 3.34
875 890 4.940463 CGATTCGGAAACTTATAGGGTGA 58.060 43.478 0.00 0.00 0.00 4.02
876 891 4.982916 CGATTCGGAAACTTATAGGGTGAG 59.017 45.833 0.00 0.00 0.00 3.51
877 892 5.221185 CGATTCGGAAACTTATAGGGTGAGA 60.221 44.000 0.00 0.00 0.00 3.27
878 893 6.516860 CGATTCGGAAACTTATAGGGTGAGAT 60.517 42.308 0.00 0.00 0.00 2.75
879 894 6.555463 TTCGGAAACTTATAGGGTGAGATT 57.445 37.500 0.00 0.00 0.00 2.40
880 895 6.158023 TCGGAAACTTATAGGGTGAGATTC 57.842 41.667 0.00 0.00 0.00 2.52
881 896 4.982916 CGGAAACTTATAGGGTGAGATTCG 59.017 45.833 0.00 0.00 29.40 3.34
882 897 5.298347 GGAAACTTATAGGGTGAGATTCGG 58.702 45.833 0.00 0.00 29.40 4.30
883 898 4.338379 AACTTATAGGGTGAGATTCGGC 57.662 45.455 0.00 0.00 0.00 5.54
884 899 2.633481 ACTTATAGGGTGAGATTCGGCC 59.367 50.000 0.00 0.00 0.00 6.13
885 900 2.696526 TATAGGGTGAGATTCGGCCT 57.303 50.000 0.00 0.00 0.00 5.19
886 901 2.696526 ATAGGGTGAGATTCGGCCTA 57.303 50.000 0.00 0.00 0.00 3.93
887 902 2.464796 TAGGGTGAGATTCGGCCTAA 57.535 50.000 0.00 0.00 0.00 2.69
888 903 1.807814 AGGGTGAGATTCGGCCTAAT 58.192 50.000 1.35 1.35 0.00 1.73
889 904 2.972348 AGGGTGAGATTCGGCCTAATA 58.028 47.619 1.83 0.00 0.00 0.98
890 905 2.900546 AGGGTGAGATTCGGCCTAATAG 59.099 50.000 1.83 0.00 0.00 1.73
891 906 2.613223 GGGTGAGATTCGGCCTAATAGC 60.613 54.545 1.83 0.00 0.00 2.97
892 907 2.037251 GGTGAGATTCGGCCTAATAGCA 59.963 50.000 1.83 1.63 0.00 3.49
893 908 3.494398 GGTGAGATTCGGCCTAATAGCAA 60.494 47.826 1.83 0.00 0.00 3.91
894 909 4.127171 GTGAGATTCGGCCTAATAGCAAA 58.873 43.478 1.83 0.00 0.00 3.68
895 910 4.757149 GTGAGATTCGGCCTAATAGCAAAT 59.243 41.667 1.83 0.00 0.00 2.32
896 911 5.239525 GTGAGATTCGGCCTAATAGCAAATT 59.760 40.000 1.83 0.00 0.00 1.82
897 912 5.827797 TGAGATTCGGCCTAATAGCAAATTT 59.172 36.000 1.83 0.00 0.00 1.82
898 913 6.076981 AGATTCGGCCTAATAGCAAATTTG 57.923 37.500 14.03 14.03 0.00 2.32
899 914 4.647424 TTCGGCCTAATAGCAAATTTGG 57.353 40.909 19.47 2.34 0.00 3.28
900 915 2.360801 TCGGCCTAATAGCAAATTTGGC 59.639 45.455 19.47 21.04 45.01 4.52
901 916 2.100584 CGGCCTAATAGCAAATTTGGCA 59.899 45.455 26.34 4.38 46.65 4.92
902 917 3.430098 CGGCCTAATAGCAAATTTGGCAA 60.430 43.478 26.34 0.00 46.65 4.52
903 918 4.122046 GGCCTAATAGCAAATTTGGCAAG 58.878 43.478 26.34 8.17 46.65 4.01
904 919 4.383010 GGCCTAATAGCAAATTTGGCAAGT 60.383 41.667 26.34 0.00 46.65 3.16
905 920 5.178061 GCCTAATAGCAAATTTGGCAAGTT 58.822 37.500 22.93 1.71 45.06 2.66
906 921 5.643348 GCCTAATAGCAAATTTGGCAAGTTT 59.357 36.000 22.93 14.12 45.06 2.66
907 922 6.816140 GCCTAATAGCAAATTTGGCAAGTTTA 59.184 34.615 22.93 6.08 45.06 2.01
908 923 7.201522 GCCTAATAGCAAATTTGGCAAGTTTAC 60.202 37.037 22.93 13.99 45.06 2.01
909 924 7.816995 CCTAATAGCAAATTTGGCAAGTTTACA 59.183 33.333 18.56 8.66 0.00 2.41
910 925 7.420184 AATAGCAAATTTGGCAAGTTTACAC 57.580 32.000 18.56 11.98 0.00 2.90
911 926 4.764172 AGCAAATTTGGCAAGTTTACACA 58.236 34.783 18.56 0.00 0.00 3.72
912 927 5.181748 AGCAAATTTGGCAAGTTTACACAA 58.818 33.333 18.56 0.00 0.00 3.33
913 928 5.645497 AGCAAATTTGGCAAGTTTACACAAA 59.355 32.000 18.56 0.00 35.76 2.83
914 929 6.150140 AGCAAATTTGGCAAGTTTACACAAAA 59.850 30.769 18.56 0.00 35.06 2.44
915 930 6.803807 GCAAATTTGGCAAGTTTACACAAAAA 59.196 30.769 18.56 0.00 35.06 1.94
940 955 9.660180 AAAAAGGTAAATTTTGCAAGTTAGACA 57.340 25.926 0.00 0.00 32.81 3.41
941 956 8.871686 AAAGGTAAATTTTGCAAGTTAGACAG 57.128 30.769 0.00 0.00 0.00 3.51
942 957 6.447162 AGGTAAATTTTGCAAGTTAGACAGC 58.553 36.000 0.00 0.00 0.00 4.40
943 958 5.342259 GGTAAATTTTGCAAGTTAGACAGCG 59.658 40.000 0.00 0.00 0.00 5.18
944 959 4.829064 AATTTTGCAAGTTAGACAGCGA 57.171 36.364 0.00 0.00 0.00 4.93
945 960 3.602390 TTTTGCAAGTTAGACAGCGAC 57.398 42.857 0.00 0.00 0.00 5.19
946 961 2.526304 TTGCAAGTTAGACAGCGACT 57.474 45.000 0.00 0.00 0.00 4.18
947 962 2.526304 TGCAAGTTAGACAGCGACTT 57.474 45.000 0.00 0.00 34.14 3.01
952 967 4.547532 CAAGTTAGACAGCGACTTGTAGT 58.452 43.478 7.17 0.00 43.14 2.73
953 968 4.850347 AGTTAGACAGCGACTTGTAGTT 57.150 40.909 0.00 0.00 0.00 2.24
954 969 5.197682 AGTTAGACAGCGACTTGTAGTTT 57.802 39.130 0.00 0.00 0.00 2.66
955 970 4.982916 AGTTAGACAGCGACTTGTAGTTTG 59.017 41.667 0.00 0.00 0.00 2.93
956 971 3.728076 AGACAGCGACTTGTAGTTTGA 57.272 42.857 0.00 0.00 0.00 2.69
957 972 4.258702 AGACAGCGACTTGTAGTTTGAT 57.741 40.909 0.00 0.00 0.00 2.57
958 973 4.238514 AGACAGCGACTTGTAGTTTGATC 58.761 43.478 0.00 0.00 0.00 2.92
959 974 4.021894 AGACAGCGACTTGTAGTTTGATCT 60.022 41.667 0.00 0.00 0.00 2.75
960 975 4.238514 ACAGCGACTTGTAGTTTGATCTC 58.761 43.478 0.00 0.00 0.00 2.75
961 976 4.237724 CAGCGACTTGTAGTTTGATCTCA 58.762 43.478 0.00 0.00 0.00 3.27
962 977 4.686091 CAGCGACTTGTAGTTTGATCTCAA 59.314 41.667 0.00 0.00 0.00 3.02
963 978 5.177511 CAGCGACTTGTAGTTTGATCTCAAA 59.822 40.000 1.28 1.28 42.90 2.69
964 979 5.758296 AGCGACTTGTAGTTTGATCTCAAAA 59.242 36.000 6.92 0.00 46.08 2.44
965 980 6.428159 AGCGACTTGTAGTTTGATCTCAAAAT 59.572 34.615 10.09 10.09 46.08 1.82
966 981 7.602644 AGCGACTTGTAGTTTGATCTCAAAATA 59.397 33.333 6.92 7.69 46.08 1.40
967 982 8.391106 GCGACTTGTAGTTTGATCTCAAAATAT 58.609 33.333 13.84 1.32 44.58 1.28
1178 1196 0.109342 GGGCGGAGATGGTGATCAAT 59.891 55.000 0.00 0.00 0.00 2.57
1452 1470 4.988716 ACCACGGCGAGGAGACCA 62.989 66.667 29.75 0.00 0.00 4.02
1602 1620 1.254284 CCACAGGTCCTTCGAGCTCT 61.254 60.000 12.85 0.00 45.07 4.09
1964 1982 1.262151 GACATCTACGACCTCGAGCTC 59.738 57.143 6.99 2.73 43.02 4.09
1967 1985 1.082679 TCTACGACCTCGAGCTCACG 61.083 60.000 15.40 12.59 43.02 4.35
2092 2110 4.082523 CCAGGAAGGCGGCGAGAA 62.083 66.667 12.98 0.00 0.00 2.87
2135 2171 1.611936 GGAGGAGAGGACAAGGTTTGC 60.612 57.143 0.00 0.00 0.00 3.68
2145 2183 5.580022 AGGACAAGGTTTGCCAATTACTAT 58.420 37.500 0.00 0.00 37.19 2.12
2151 2189 7.668052 ACAAGGTTTGCCAATTACTATGAGTTA 59.332 33.333 0.00 0.00 37.19 2.24
2225 2268 5.826601 TTTTGTGCTGTGTCAATAACTCA 57.173 34.783 0.00 0.00 0.00 3.41
2226 2269 5.826601 TTTGTGCTGTGTCAATAACTCAA 57.173 34.783 0.00 0.00 31.37 3.02
2238 2281 3.771577 ATAACTCAATCCGGGGATGAC 57.228 47.619 0.00 0.00 34.70 3.06
2241 2284 0.107456 CTCAATCCGGGGATGACCTG 59.893 60.000 0.00 0.00 45.92 4.00
2250 2293 2.094675 GGGGATGACCTGATTTGTGTG 58.905 52.381 0.00 0.00 40.03 3.82
2251 2294 2.555227 GGGGATGACCTGATTTGTGTGT 60.555 50.000 0.00 0.00 40.03 3.72
2252 2295 3.157087 GGGATGACCTGATTTGTGTGTT 58.843 45.455 0.00 0.00 35.85 3.32
2253 2296 3.057315 GGGATGACCTGATTTGTGTGTTG 60.057 47.826 0.00 0.00 35.85 3.33
2260 2303 4.810491 ACCTGATTTGTGTGTTGATTTTGC 59.190 37.500 0.00 0.00 0.00 3.68
2379 11011 4.778143 GGCTCGACCCGGCATTGT 62.778 66.667 0.00 0.00 0.00 2.71
2519 11151 2.672098 GAGAAGCTGATGGAGGAGGTA 58.328 52.381 0.00 0.00 0.00 3.08
2561 11193 1.139853 GCCGAGGTTCTGATGAGGAAT 59.860 52.381 0.00 0.00 0.00 3.01
2576 11208 4.814294 AATGACGGAGCCGACGCC 62.814 66.667 16.83 2.60 42.83 5.68
2660 11292 4.236935 GCGTGAAACATCATGGAAACAAT 58.763 39.130 0.00 0.00 40.60 2.71
2823 11455 1.201647 TCGAAGAGGTCACCGATGTTC 59.798 52.381 0.00 0.00 0.00 3.18
2872 11504 1.956477 TGCAATCCGAGATCTCATCGA 59.044 47.619 22.31 13.88 42.76 3.59
2897 11529 1.005215 CTCAAGGCAAAGAGGGGTGAT 59.995 52.381 0.00 0.00 0.00 3.06
2918 11550 0.888736 CCGGTGAGAACAATGGTGCA 60.889 55.000 0.00 0.00 0.00 4.57
2919 11551 0.518636 CGGTGAGAACAATGGTGCAG 59.481 55.000 0.00 0.00 0.00 4.41
2939 11571 3.004734 CAGACCAAGATGGAAACCACAAC 59.995 47.826 2.85 0.00 40.96 3.32
2968 11600 9.494271 TGATAATAAATAGGAGCAGACAATGAC 57.506 33.333 0.00 0.00 0.00 3.06
2977 11609 5.071384 AGGAGCAGACAATGACATCATATCA 59.929 40.000 0.00 0.00 35.10 2.15
2987 11619 5.556006 TGACATCATATCATGCTCTGGAA 57.444 39.130 0.00 0.00 0.00 3.53
3089 11721 9.289782 ACTAGTTCTTGTTATGAATTTTCAGCT 57.710 29.630 0.00 0.00 41.08 4.24
3125 11757 8.066595 GCAACTAGATACATCTTGCTAACATTG 58.933 37.037 0.00 2.79 38.32 2.82
3224 13053 5.507817 GGAAACACATGCATTTGTCTCAAGA 60.508 40.000 18.33 0.00 0.00 3.02
3238 13067 4.060900 GTCTCAAGAGCAATGTCTGAACA 58.939 43.478 0.00 0.00 40.38 3.18
3345 13174 3.784701 TCGAGCAACTCTTGTCCTATC 57.215 47.619 0.00 0.00 0.00 2.08
3372 13202 5.776173 TCCTTTTAAGATTGAAAACGGCA 57.224 34.783 0.00 0.00 0.00 5.69
3384 13214 3.065510 TGAAAACGGCAAAATCAAGTCGA 59.934 39.130 0.00 0.00 36.18 4.20
3395 13225 6.346040 GCAAAATCAAGTCGATCAAAACCAAG 60.346 38.462 0.00 0.00 31.11 3.61
3442 13272 7.008628 GCACAGACCATTAGATTTTCGAAAATG 59.991 37.037 34.35 22.77 38.64 2.32
3450 13280 9.061610 CATTAGATTTTCGAAAATGTTAACGCT 57.938 29.630 34.35 24.87 38.64 5.07
3521 13351 2.445274 GTGAGCGCACGAATCTTGA 58.555 52.632 11.47 0.00 34.94 3.02
3536 13366 5.446473 CGAATCTTGACATGTTTCTAGTGCC 60.446 44.000 0.00 0.00 0.00 5.01
3576 13406 4.446413 GGGCGTTCACCCGATCGT 62.446 66.667 15.09 0.00 40.98 3.73
3587 13417 4.429212 CGATCGTCCACACGGCCA 62.429 66.667 7.03 0.00 46.70 5.36
3601 13431 1.865788 CGGCCATTTCACCACACAGG 61.866 60.000 2.24 0.00 45.67 4.00
3615 13445 4.039092 CAGGAGGGGCTGGTGTGG 62.039 72.222 0.00 0.00 0.00 4.17
3659 13489 1.359833 CCACTTTGCACGCACACAT 59.640 52.632 0.00 0.00 0.00 3.21
3664 13494 1.535028 CTTTGCACGCACACATAAGGA 59.465 47.619 0.00 0.00 0.00 3.36
3668 13498 1.927174 GCACGCACACATAAGGACTAG 59.073 52.381 0.00 0.00 0.00 2.57
3721 13551 0.836400 GTCTCCTCTCCCACACCCAA 60.836 60.000 0.00 0.00 0.00 4.12
3722 13552 0.119155 TCTCCTCTCCCACACCCAAT 59.881 55.000 0.00 0.00 0.00 3.16
3825 13656 1.130955 CGAGTTGCCATGTGTTTTGC 58.869 50.000 0.00 0.00 0.00 3.68
3836 13667 0.309612 GTGTTTTGCAGGGTACACGG 59.690 55.000 0.00 0.00 32.56 4.94
3857 13688 0.677288 AACTGCCTAGTGTGCACGTA 59.323 50.000 13.13 5.46 37.19 3.57
3858 13689 0.677288 ACTGCCTAGTGTGCACGTAA 59.323 50.000 13.13 0.00 35.34 3.18
3901 13732 2.481104 CCGAGTTGCCATGTGTTTTTGT 60.481 45.455 0.00 0.00 0.00 2.83
3921 13752 3.428687 TGGTACATGGCAACTGCAA 57.571 47.368 3.76 0.00 44.36 4.08
3962 14057 1.604308 CTGGACCATGGCAACTGCA 60.604 57.895 13.04 2.51 44.36 4.41
3967 14062 4.789075 CATGGCAACTGCAGGCGC 62.789 66.667 19.93 19.09 44.36 6.53
4041 14141 2.147958 GTGTGGGCGTTATCAACTTCA 58.852 47.619 0.00 0.00 0.00 3.02
4049 14149 3.135225 CGTTATCAACTTCACCCACACA 58.865 45.455 0.00 0.00 0.00 3.72
4069 14169 1.977009 ACGCGTGTGAGAGGGATCA 60.977 57.895 12.93 0.00 0.00 2.92
4115 14215 2.853731 TTACTTGTTTTGCCCACACG 57.146 45.000 0.00 0.00 0.00 4.49
4133 14233 0.949105 CGTAGGTGTGTGGGCTGTTC 60.949 60.000 0.00 0.00 0.00 3.18
4140 14240 1.985159 TGTGTGGGCTGTTCCTCTTAT 59.015 47.619 0.00 0.00 34.39 1.73
4170 14270 1.779061 AAATGTGTGGGCGGACTCCT 61.779 55.000 0.00 0.00 0.00 3.69
4171 14271 0.907704 AATGTGTGGGCGGACTCCTA 60.908 55.000 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.668525 TGTAGTTCTACATGATATCGACGAT 57.331 36.000 15.74 15.74 0.00 3.73
103 104 2.497675 AGCAGTACAAGGTGACATCGAT 59.502 45.455 0.00 0.00 0.00 3.59
109 110 2.037251 TCCTCAAGCAGTACAAGGTGAC 59.963 50.000 0.00 0.00 0.00 3.67
155 156 4.518590 GGAACCGAGGGAGTACTAGATAAC 59.481 50.000 0.00 0.00 0.00 1.89
173 174 7.429374 AGGTACTAGGTAGTAATTTGGAACC 57.571 40.000 0.00 0.00 40.20 3.62
241 242 6.158598 TCCAGCTTCAATAAACTGCAATTTC 58.841 36.000 0.00 0.00 0.00 2.17
249 250 4.026052 CCCCATTCCAGCTTCAATAAACT 58.974 43.478 0.00 0.00 0.00 2.66
260 261 0.826062 CACCATTTCCCCATTCCAGC 59.174 55.000 0.00 0.00 0.00 4.85
264 265 6.983906 ATATCTTTCACCATTTCCCCATTC 57.016 37.500 0.00 0.00 0.00 2.67
267 268 6.736581 TGTTATATCTTTCACCATTTCCCCA 58.263 36.000 0.00 0.00 0.00 4.96
270 285 8.560374 GCTACTGTTATATCTTTCACCATTTCC 58.440 37.037 0.00 0.00 0.00 3.13
277 292 5.462398 CCCGTGCTACTGTTATATCTTTCAC 59.538 44.000 0.00 0.00 0.00 3.18
297 312 1.327690 TAGCGATTTCCTGAGCCCGT 61.328 55.000 0.00 0.00 0.00 5.28
319 334 3.667726 GGAACGCGCTACTATTACTTAGC 59.332 47.826 5.73 0.00 37.87 3.09
341 356 2.675767 ATATGAGCAGCGCATTTTCG 57.324 45.000 17.45 0.00 0.00 3.46
353 368 6.809196 GTGCTACTACCATTGACTATATGAGC 59.191 42.308 0.00 0.00 0.00 4.26
356 371 6.093404 CCGTGCTACTACCATTGACTATATG 58.907 44.000 0.00 0.00 0.00 1.78
360 375 2.691526 CCCGTGCTACTACCATTGACTA 59.308 50.000 0.00 0.00 0.00 2.59
365 380 2.429610 CTGTACCCGTGCTACTACCATT 59.570 50.000 0.00 0.00 0.00 3.16
367 382 1.004628 TCTGTACCCGTGCTACTACCA 59.995 52.381 0.00 0.00 0.00 3.25
368 383 1.403323 GTCTGTACCCGTGCTACTACC 59.597 57.143 0.00 0.00 0.00 3.18
369 384 2.086869 TGTCTGTACCCGTGCTACTAC 58.913 52.381 0.00 0.00 0.00 2.73
377 392 0.242017 GTAGCGTTGTCTGTACCCGT 59.758 55.000 0.00 0.00 0.00 5.28
380 395 5.106555 TGTTAGTAGTAGCGTTGTCTGTACC 60.107 44.000 0.00 0.00 0.00 3.34
389 404 5.638783 CAGCTAACTGTTAGTAGTAGCGTT 58.361 41.667 24.13 0.00 39.22 4.84
390 405 5.232610 CAGCTAACTGTTAGTAGTAGCGT 57.767 43.478 24.13 3.97 39.22 5.07
435 450 1.593750 CTATCAGCAGCTCGGGCAC 60.594 63.158 11.40 0.00 41.70 5.01
442 457 2.363683 GTTTTGAGGCTATCAGCAGCT 58.636 47.619 0.00 0.00 44.75 4.24
449 464 2.014594 CGCGGGTTTTGAGGCTATC 58.985 57.895 0.00 0.00 0.00 2.08
456 471 0.604578 AGTAGTAGCGCGGGTTTTGA 59.395 50.000 8.83 0.00 0.00 2.69
484 499 6.039047 CCGCTACAACTAAGTTGATAGTAGGA 59.961 42.308 0.00 0.00 45.28 2.94
489 504 4.369182 CCCCGCTACAACTAAGTTGATAG 58.631 47.826 0.00 0.00 45.28 2.08
490 505 3.133362 CCCCCGCTACAACTAAGTTGATA 59.867 47.826 0.00 0.00 45.28 2.15
491 506 2.093128 CCCCCGCTACAACTAAGTTGAT 60.093 50.000 0.00 0.00 45.28 2.57
492 507 1.276989 CCCCCGCTACAACTAAGTTGA 59.723 52.381 0.00 0.00 45.28 3.18
494 509 1.355112 ACCCCCGCTACAACTAAGTT 58.645 50.000 0.00 0.00 0.00 2.66
495 510 2.236489 TACCCCCGCTACAACTAAGT 57.764 50.000 0.00 0.00 0.00 2.24
496 511 4.942761 TTATACCCCCGCTACAACTAAG 57.057 45.455 0.00 0.00 0.00 2.18
497 512 4.141733 GGTTTATACCCCCGCTACAACTAA 60.142 45.833 0.00 0.00 38.60 2.24
498 513 3.387699 GGTTTATACCCCCGCTACAACTA 59.612 47.826 0.00 0.00 38.60 2.24
499 514 2.171237 GGTTTATACCCCCGCTACAACT 59.829 50.000 0.00 0.00 38.60 3.16
500 515 2.564771 GGTTTATACCCCCGCTACAAC 58.435 52.381 0.00 0.00 38.60 3.32
511 526 2.294512 ACTAGTAGCGCGGGTTTATACC 59.705 50.000 8.83 0.00 44.22 2.73
512 527 3.632855 ACTAGTAGCGCGGGTTTATAC 57.367 47.619 8.83 0.00 0.00 1.47
513 528 4.821805 ACTTACTAGTAGCGCGGGTTTATA 59.178 41.667 8.83 0.00 31.21 0.98
514 529 3.633986 ACTTACTAGTAGCGCGGGTTTAT 59.366 43.478 8.83 0.00 31.21 1.40
515 530 3.016736 ACTTACTAGTAGCGCGGGTTTA 58.983 45.455 8.83 0.00 31.21 2.01
516 531 1.821136 ACTTACTAGTAGCGCGGGTTT 59.179 47.619 8.83 0.00 31.21 3.27
517 532 1.467920 ACTTACTAGTAGCGCGGGTT 58.532 50.000 8.83 0.00 31.21 4.11
518 533 2.216898 CTACTTACTAGTAGCGCGGGT 58.783 52.381 8.83 0.19 45.33 5.28
519 534 2.965477 CTACTTACTAGTAGCGCGGG 57.035 55.000 8.83 0.00 45.33 6.13
526 541 5.295950 CCTCGCTACAGCTACTTACTAGTA 58.704 45.833 0.00 0.00 39.32 1.82
527 542 4.128643 CCTCGCTACAGCTACTTACTAGT 58.871 47.826 0.00 0.00 39.32 2.57
528 543 3.499157 CCCTCGCTACAGCTACTTACTAG 59.501 52.174 0.00 0.00 39.32 2.57
529 544 3.474600 CCCTCGCTACAGCTACTTACTA 58.525 50.000 0.00 0.00 39.32 1.82
530 545 2.299521 CCCTCGCTACAGCTACTTACT 58.700 52.381 0.00 0.00 39.32 2.24
531 546 1.337387 CCCCTCGCTACAGCTACTTAC 59.663 57.143 0.00 0.00 39.32 2.34
532 547 1.064166 ACCCCTCGCTACAGCTACTTA 60.064 52.381 0.00 0.00 39.32 2.24
533 548 0.324460 ACCCCTCGCTACAGCTACTT 60.324 55.000 0.00 0.00 39.32 2.24
534 549 0.549950 TACCCCTCGCTACAGCTACT 59.450 55.000 0.00 0.00 39.32 2.57
535 550 1.618487 ATACCCCTCGCTACAGCTAC 58.382 55.000 0.00 0.00 39.32 3.58
536 551 3.513909 TTATACCCCTCGCTACAGCTA 57.486 47.619 0.00 0.00 39.32 3.32
537 552 2.364647 GTTTATACCCCTCGCTACAGCT 59.635 50.000 0.00 0.00 39.32 4.24
538 553 2.547430 GGTTTATACCCCTCGCTACAGC 60.547 54.545 0.00 0.00 38.60 4.40
539 554 3.382048 GGTTTATACCCCTCGCTACAG 57.618 52.381 0.00 0.00 38.60 2.74
550 565 2.592574 GCCGGGCGGGTTTATACC 60.593 66.667 13.07 0.00 44.22 2.73
551 566 2.592574 GGCCGGGCGGGTTTATAC 60.593 66.667 14.21 0.00 38.44 1.47
552 567 3.088561 TGGCCGGGCGGGTTTATA 61.089 61.111 24.45 0.00 38.44 0.98
553 568 4.807631 GTGGCCGGGCGGGTTTAT 62.808 66.667 24.45 0.00 38.44 1.40
566 581 1.061566 GACGTTTATTAGTGGCGTGGC 59.938 52.381 0.00 0.00 35.86 5.01
567 582 2.613691 AGACGTTTATTAGTGGCGTGG 58.386 47.619 0.00 0.00 35.86 4.94
568 583 3.549070 GGTAGACGTTTATTAGTGGCGTG 59.451 47.826 0.00 0.00 35.86 5.34
569 584 3.445096 AGGTAGACGTTTATTAGTGGCGT 59.555 43.478 0.00 0.00 38.55 5.68
570 585 4.037858 AGGTAGACGTTTATTAGTGGCG 57.962 45.455 0.00 0.00 0.00 5.69
571 586 7.328005 GCTTATAGGTAGACGTTTATTAGTGGC 59.672 40.741 0.00 0.00 0.00 5.01
572 587 8.574737 AGCTTATAGGTAGACGTTTATTAGTGG 58.425 37.037 0.00 0.00 0.00 4.00
573 588 9.962783 AAGCTTATAGGTAGACGTTTATTAGTG 57.037 33.333 0.00 0.00 0.00 2.74
578 593 9.747293 GAGAAAAGCTTATAGGTAGACGTTTAT 57.253 33.333 0.00 0.00 0.00 1.40
579 594 8.964772 AGAGAAAAGCTTATAGGTAGACGTTTA 58.035 33.333 0.00 0.00 0.00 2.01
580 595 7.838884 AGAGAAAAGCTTATAGGTAGACGTTT 58.161 34.615 0.00 0.00 0.00 3.60
581 596 7.407393 AGAGAAAAGCTTATAGGTAGACGTT 57.593 36.000 0.00 0.00 0.00 3.99
582 597 7.774625 ACTAGAGAAAAGCTTATAGGTAGACGT 59.225 37.037 0.00 0.00 0.00 4.34
583 598 8.156994 ACTAGAGAAAAGCTTATAGGTAGACG 57.843 38.462 0.00 0.00 0.00 4.18
587 602 8.848182 GCACTACTAGAGAAAAGCTTATAGGTA 58.152 37.037 0.00 0.00 0.00 3.08
588 603 7.562088 AGCACTACTAGAGAAAAGCTTATAGGT 59.438 37.037 0.00 0.00 0.00 3.08
589 604 7.947282 AGCACTACTAGAGAAAAGCTTATAGG 58.053 38.462 0.00 0.00 0.00 2.57
592 607 8.973182 AGTTAGCACTACTAGAGAAAAGCTTAT 58.027 33.333 0.00 0.00 32.70 1.73
593 608 8.350852 AGTTAGCACTACTAGAGAAAAGCTTA 57.649 34.615 0.00 0.00 32.70 3.09
594 609 7.234661 AGTTAGCACTACTAGAGAAAAGCTT 57.765 36.000 0.00 0.00 32.70 3.74
595 610 6.844097 AGTTAGCACTACTAGAGAAAAGCT 57.156 37.500 0.00 0.66 35.06 3.74
596 611 6.183360 GCAAGTTAGCACTACTAGAGAAAAGC 60.183 42.308 0.00 0.00 30.68 3.51
597 612 6.868864 TGCAAGTTAGCACTACTAGAGAAAAG 59.131 38.462 0.00 0.00 40.11 2.27
598 613 6.755206 TGCAAGTTAGCACTACTAGAGAAAA 58.245 36.000 0.00 0.00 40.11 2.29
599 614 6.340962 TGCAAGTTAGCACTACTAGAGAAA 57.659 37.500 0.00 0.00 40.11 2.52
600 615 5.977489 TGCAAGTTAGCACTACTAGAGAA 57.023 39.130 0.00 0.00 40.11 2.87
611 626 3.047280 CGCGGGTGCAAGTTAGCA 61.047 61.111 0.00 0.00 42.97 3.49
612 627 3.799755 CCGCGGGTGCAAGTTAGC 61.800 66.667 20.10 0.00 42.97 3.09
613 628 3.799755 GCCGCGGGTGCAAGTTAG 61.800 66.667 29.38 0.00 42.97 2.34
630 645 0.675633 CTTGTTTTGCCTCACAGGGG 59.324 55.000 0.00 0.00 35.37 4.79
631 646 0.032540 GCTTGTTTTGCCTCACAGGG 59.967 55.000 0.00 0.00 35.37 4.45
632 647 0.746063 TGCTTGTTTTGCCTCACAGG 59.254 50.000 0.00 0.00 38.80 4.00
633 648 1.536709 GGTGCTTGTTTTGCCTCACAG 60.537 52.381 0.00 0.00 0.00 3.66
634 649 0.459489 GGTGCTTGTTTTGCCTCACA 59.541 50.000 0.00 0.00 0.00 3.58
635 650 0.249447 GGGTGCTTGTTTTGCCTCAC 60.249 55.000 0.00 0.00 0.00 3.51
636 651 0.396974 AGGGTGCTTGTTTTGCCTCA 60.397 50.000 0.00 0.00 0.00 3.86
637 652 0.315251 GAGGGTGCTTGTTTTGCCTC 59.685 55.000 0.00 0.00 0.00 4.70
638 653 0.106015 AGAGGGTGCTTGTTTTGCCT 60.106 50.000 0.00 0.00 0.00 4.75
639 654 0.315251 GAGAGGGTGCTTGTTTTGCC 59.685 55.000 0.00 0.00 0.00 4.52
640 655 1.322442 AGAGAGGGTGCTTGTTTTGC 58.678 50.000 0.00 0.00 0.00 3.68
641 656 3.744660 AGTAGAGAGGGTGCTTGTTTTG 58.255 45.455 0.00 0.00 0.00 2.44
642 657 4.141482 TGAAGTAGAGAGGGTGCTTGTTTT 60.141 41.667 0.00 0.00 0.00 2.43
643 658 3.391296 TGAAGTAGAGAGGGTGCTTGTTT 59.609 43.478 0.00 0.00 0.00 2.83
644 659 2.972713 TGAAGTAGAGAGGGTGCTTGTT 59.027 45.455 0.00 0.00 0.00 2.83
645 660 2.609747 TGAAGTAGAGAGGGTGCTTGT 58.390 47.619 0.00 0.00 0.00 3.16
646 661 3.902881 ATGAAGTAGAGAGGGTGCTTG 57.097 47.619 0.00 0.00 0.00 4.01
647 662 4.873010 TCTATGAAGTAGAGAGGGTGCTT 58.127 43.478 0.00 0.00 34.50 3.91
648 663 4.528076 TCTATGAAGTAGAGAGGGTGCT 57.472 45.455 0.00 0.00 34.50 4.40
657 672 7.187824 AGGCAATGAAACTCTATGAAGTAGA 57.812 36.000 0.00 0.00 37.09 2.59
658 673 7.856145 AAGGCAATGAAACTCTATGAAGTAG 57.144 36.000 0.00 0.00 0.00 2.57
659 674 7.064609 CGAAAGGCAATGAAACTCTATGAAGTA 59.935 37.037 0.00 0.00 0.00 2.24
660 675 6.128172 CGAAAGGCAATGAAACTCTATGAAGT 60.128 38.462 0.00 0.00 0.00 3.01
661 676 6.253746 CGAAAGGCAATGAAACTCTATGAAG 58.746 40.000 0.00 0.00 0.00 3.02
662 677 5.391950 GCGAAAGGCAATGAAACTCTATGAA 60.392 40.000 0.00 0.00 42.87 2.57
663 678 4.094887 GCGAAAGGCAATGAAACTCTATGA 59.905 41.667 0.00 0.00 42.87 2.15
664 679 4.346129 GCGAAAGGCAATGAAACTCTATG 58.654 43.478 0.00 0.00 42.87 2.23
665 680 4.622701 GCGAAAGGCAATGAAACTCTAT 57.377 40.909 0.00 0.00 42.87 1.98
667 682 2.997485 GCGAAAGGCAATGAAACTCT 57.003 45.000 0.00 0.00 42.87 3.24
679 694 3.110178 GTCGACACCGGCGAAAGG 61.110 66.667 9.30 0.00 39.73 3.11
700 715 3.234730 ATCGGGATGAGGCGGACC 61.235 66.667 0.00 0.00 0.00 4.46
701 716 2.029666 CATCGGGATGAGGCGGAC 59.970 66.667 2.46 0.00 41.20 4.79
702 717 3.233980 CCATCGGGATGAGGCGGA 61.234 66.667 10.16 0.00 41.20 5.54
703 718 4.996434 GCCATCGGGATGAGGCGG 62.996 72.222 10.16 0.00 41.20 6.13
704 719 4.996434 GGCCATCGGGATGAGGCG 62.996 72.222 10.16 0.00 41.20 5.52
705 720 1.768684 TAAGGCCATCGGGATGAGGC 61.769 60.000 5.01 11.57 41.20 4.70
706 721 0.035458 GTAAGGCCATCGGGATGAGG 59.965 60.000 5.01 0.00 41.20 3.86
707 722 0.319900 CGTAAGGCCATCGGGATGAG 60.320 60.000 5.01 2.18 41.20 2.90
708 723 1.745890 CGTAAGGCCATCGGGATGA 59.254 57.895 5.01 0.00 41.20 2.92
709 724 4.361253 CGTAAGGCCATCGGGATG 57.639 61.111 5.01 1.62 38.51 3.51
728 743 1.921869 AAGGGGGAGTGCCGTTATGG 61.922 60.000 0.00 0.00 42.50 2.74
729 744 0.834612 TAAGGGGGAGTGCCGTTATG 59.165 55.000 0.00 0.00 33.83 1.90
730 745 0.835276 GTAAGGGGGAGTGCCGTTAT 59.165 55.000 0.00 0.00 33.83 1.89
731 746 0.252375 AGTAAGGGGGAGTGCCGTTA 60.252 55.000 0.00 0.00 33.83 3.18
732 747 1.538135 AGTAAGGGGGAGTGCCGTT 60.538 57.895 0.00 0.00 33.83 4.44
733 748 2.122056 AGTAAGGGGGAGTGCCGT 59.878 61.111 0.00 0.00 33.83 5.68
734 749 1.987855 TCAGTAAGGGGGAGTGCCG 60.988 63.158 0.00 0.00 33.83 5.69
735 750 1.602771 GTCAGTAAGGGGGAGTGCC 59.397 63.158 0.00 0.00 0.00 5.01
736 751 1.218316 CGTCAGTAAGGGGGAGTGC 59.782 63.158 0.00 0.00 0.00 4.40
737 752 0.818296 CTCGTCAGTAAGGGGGAGTG 59.182 60.000 0.00 0.00 0.00 3.51
738 753 0.702902 TCTCGTCAGTAAGGGGGAGT 59.297 55.000 0.00 0.00 0.00 3.85
739 754 1.394618 CTCTCGTCAGTAAGGGGGAG 58.605 60.000 0.00 0.00 0.00 4.30
740 755 0.033405 CCTCTCGTCAGTAAGGGGGA 60.033 60.000 0.00 0.00 28.68 4.81
741 756 0.033405 TCCTCTCGTCAGTAAGGGGG 60.033 60.000 0.00 0.00 33.62 5.40
742 757 1.104630 GTCCTCTCGTCAGTAAGGGG 58.895 60.000 0.00 0.00 34.15 4.79
743 758 2.131776 AGTCCTCTCGTCAGTAAGGG 57.868 55.000 0.00 0.00 0.00 3.95
744 759 2.096174 CGAAGTCCTCTCGTCAGTAAGG 59.904 54.545 0.00 0.00 0.00 2.69
745 760 2.743126 ACGAAGTCCTCTCGTCAGTAAG 59.257 50.000 0.00 0.00 29.74 2.34
746 761 2.775890 ACGAAGTCCTCTCGTCAGTAA 58.224 47.619 0.00 0.00 29.74 2.24
747 762 2.469274 ACGAAGTCCTCTCGTCAGTA 57.531 50.000 0.00 0.00 29.74 2.74
748 763 1.606903 AACGAAGTCCTCTCGTCAGT 58.393 50.000 0.00 0.00 45.00 3.41
749 764 2.708386 AAACGAAGTCCTCTCGTCAG 57.292 50.000 0.00 0.00 45.00 3.51
750 765 3.447918 AAAAACGAAGTCCTCTCGTCA 57.552 42.857 0.00 0.00 45.00 4.35
751 766 4.616381 GTCTAAAAACGAAGTCCTCTCGTC 59.384 45.833 0.00 0.00 45.00 4.20
752 767 4.544651 GTCTAAAAACGAAGTCCTCTCGT 58.455 43.478 0.00 0.00 45.00 4.18
753 768 3.602915 CGTCTAAAAACGAAGTCCTCTCG 59.397 47.826 0.00 0.00 45.00 4.04
754 769 4.544651 ACGTCTAAAAACGAAGTCCTCTC 58.455 43.478 3.16 0.00 45.00 3.20
755 770 4.581077 ACGTCTAAAAACGAAGTCCTCT 57.419 40.909 3.16 0.00 45.00 3.69
756 771 4.149571 GGAACGTCTAAAAACGAAGTCCTC 59.850 45.833 3.16 0.00 45.00 3.71
757 772 4.053983 GGAACGTCTAAAAACGAAGTCCT 58.946 43.478 3.16 0.00 45.00 3.85
758 773 4.053983 AGGAACGTCTAAAAACGAAGTCC 58.946 43.478 3.16 6.88 45.00 3.85
759 774 5.232838 TGAAGGAACGTCTAAAAACGAAGTC 59.767 40.000 3.16 0.00 45.37 3.01
760 775 5.111293 TGAAGGAACGTCTAAAAACGAAGT 58.889 37.500 3.16 0.00 45.37 3.01
761 776 5.461078 TCTGAAGGAACGTCTAAAAACGAAG 59.539 40.000 3.16 0.00 45.37 3.79
762 777 5.350633 TCTGAAGGAACGTCTAAAAACGAA 58.649 37.500 3.16 0.00 45.37 3.85
763 778 4.935702 TCTGAAGGAACGTCTAAAAACGA 58.064 39.130 3.16 0.00 45.37 3.85
765 780 7.636326 TCAAATCTGAAGGAACGTCTAAAAAC 58.364 34.615 0.00 0.00 37.81 2.43
766 781 7.795482 TCAAATCTGAAGGAACGTCTAAAAA 57.205 32.000 0.00 0.00 37.81 1.94
767 782 7.094805 CCATCAAATCTGAAGGAACGTCTAAAA 60.095 37.037 0.00 0.00 42.08 1.52
768 783 6.371548 CCATCAAATCTGAAGGAACGTCTAAA 59.628 38.462 0.00 0.00 42.08 1.85
769 784 5.874810 CCATCAAATCTGAAGGAACGTCTAA 59.125 40.000 0.00 0.00 42.08 2.10
770 785 5.419542 CCATCAAATCTGAAGGAACGTCTA 58.580 41.667 0.00 0.00 42.08 2.59
771 786 4.256920 CCATCAAATCTGAAGGAACGTCT 58.743 43.478 0.00 0.00 42.08 4.18
772 787 3.375299 CCCATCAAATCTGAAGGAACGTC 59.625 47.826 0.00 0.00 42.08 4.34
773 788 3.009033 TCCCATCAAATCTGAAGGAACGT 59.991 43.478 0.00 0.00 42.08 3.99
774 789 3.375299 GTCCCATCAAATCTGAAGGAACG 59.625 47.826 0.00 0.00 42.08 3.95
775 790 3.375299 CGTCCCATCAAATCTGAAGGAAC 59.625 47.826 0.00 0.00 42.08 3.62
776 791 3.609853 CGTCCCATCAAATCTGAAGGAA 58.390 45.455 0.00 0.00 42.08 3.36
777 792 2.680805 GCGTCCCATCAAATCTGAAGGA 60.681 50.000 0.00 0.00 42.08 3.36
778 793 1.672881 GCGTCCCATCAAATCTGAAGG 59.327 52.381 0.00 0.00 39.68 3.46
779 794 2.358957 TGCGTCCCATCAAATCTGAAG 58.641 47.619 0.00 0.00 34.49 3.02
780 795 2.488204 TGCGTCCCATCAAATCTGAA 57.512 45.000 0.00 0.00 34.49 3.02
781 796 2.715749 ATGCGTCCCATCAAATCTGA 57.284 45.000 0.00 0.00 35.56 3.27
789 804 2.320587 GCCATCGATGCGTCCCATC 61.321 63.158 20.25 0.00 45.58 3.51
790 805 2.281070 GCCATCGATGCGTCCCAT 60.281 61.111 20.25 0.00 36.70 4.00
791 806 4.545706 GGCCATCGATGCGTCCCA 62.546 66.667 20.25 0.00 0.00 4.37
792 807 4.241555 AGGCCATCGATGCGTCCC 62.242 66.667 20.25 15.37 0.00 4.46
793 808 2.663188 GAGGCCATCGATGCGTCC 60.663 66.667 20.25 18.22 37.59 4.79
794 809 2.663188 GGAGGCCATCGATGCGTC 60.663 66.667 20.25 21.88 41.57 5.19
795 810 4.592192 CGGAGGCCATCGATGCGT 62.592 66.667 20.25 15.79 0.00 5.24
798 813 4.284860 TCGCGGAGGCCATCGATG 62.285 66.667 18.76 18.76 35.02 3.84
799 814 4.286320 GTCGCGGAGGCCATCGAT 62.286 66.667 19.65 0.00 32.64 3.59
806 821 3.157217 ATCAGATGGTCGCGGAGGC 62.157 63.158 6.13 0.00 0.00 4.70
807 822 1.006805 GATCAGATGGTCGCGGAGG 60.007 63.158 6.13 0.00 0.00 4.30
808 823 0.318529 CAGATCAGATGGTCGCGGAG 60.319 60.000 6.13 0.00 0.00 4.63
809 824 0.751643 TCAGATCAGATGGTCGCGGA 60.752 55.000 6.13 0.00 0.00 5.54
810 825 0.316522 ATCAGATCAGATGGTCGCGG 59.683 55.000 6.13 0.00 0.00 6.46
811 826 2.145958 AATCAGATCAGATGGTCGCG 57.854 50.000 0.00 0.00 0.00 5.87
812 827 4.233789 GAGTAATCAGATCAGATGGTCGC 58.766 47.826 0.79 0.00 0.00 5.19
813 828 4.023622 ACGAGTAATCAGATCAGATGGTCG 60.024 45.833 17.87 17.87 34.28 4.79
814 829 5.218885 CACGAGTAATCAGATCAGATGGTC 58.781 45.833 0.79 0.00 0.00 4.02
815 830 4.646945 ACACGAGTAATCAGATCAGATGGT 59.353 41.667 0.79 0.00 0.00 3.55
816 831 4.981054 CACACGAGTAATCAGATCAGATGG 59.019 45.833 0.79 0.00 0.00 3.51
817 832 4.981054 CCACACGAGTAATCAGATCAGATG 59.019 45.833 0.79 0.00 0.00 2.90
818 833 4.889995 TCCACACGAGTAATCAGATCAGAT 59.110 41.667 0.00 0.00 0.00 2.90
819 834 4.270008 TCCACACGAGTAATCAGATCAGA 58.730 43.478 0.00 0.00 0.00 3.27
820 835 4.639135 TCCACACGAGTAATCAGATCAG 57.361 45.455 0.00 0.00 0.00 2.90
821 836 4.261197 CGATCCACACGAGTAATCAGATCA 60.261 45.833 0.00 0.00 31.38 2.92
822 837 4.222886 CGATCCACACGAGTAATCAGATC 58.777 47.826 0.00 0.00 0.00 2.75
823 838 3.551046 GCGATCCACACGAGTAATCAGAT 60.551 47.826 0.00 0.00 0.00 2.90
824 839 2.223502 GCGATCCACACGAGTAATCAGA 60.224 50.000 0.00 0.00 0.00 3.27
825 840 2.120232 GCGATCCACACGAGTAATCAG 58.880 52.381 0.00 0.00 0.00 2.90
826 841 1.202371 GGCGATCCACACGAGTAATCA 60.202 52.381 0.00 0.00 0.00 2.57
827 842 1.067212 AGGCGATCCACACGAGTAATC 59.933 52.381 0.00 0.00 33.74 1.75
828 843 1.067212 GAGGCGATCCACACGAGTAAT 59.933 52.381 0.00 0.00 33.74 1.89
829 844 0.454600 GAGGCGATCCACACGAGTAA 59.545 55.000 0.00 0.00 33.74 2.24
830 845 1.712018 CGAGGCGATCCACACGAGTA 61.712 60.000 0.00 0.00 33.74 2.59
831 846 2.885861 GAGGCGATCCACACGAGT 59.114 61.111 0.00 0.00 33.74 4.18
832 847 2.278206 CGAGGCGATCCACACGAG 60.278 66.667 0.00 0.00 33.74 4.18
833 848 3.060000 ACGAGGCGATCCACACGA 61.060 61.111 7.84 0.00 33.74 4.35
834 849 2.880879 CACGAGGCGATCCACACG 60.881 66.667 0.00 0.00 33.74 4.49
835 850 3.188786 GCACGAGGCGATCCACAC 61.189 66.667 0.00 0.00 33.74 3.82
836 851 4.451150 GGCACGAGGCGATCCACA 62.451 66.667 0.00 0.00 46.16 4.17
853 868 4.940463 TCACCCTATAAGTTTCCGAATCG 58.060 43.478 0.00 0.00 0.00 3.34
854 869 6.158023 TCTCACCCTATAAGTTTCCGAATC 57.842 41.667 0.00 0.00 0.00 2.52
855 870 6.749036 ATCTCACCCTATAAGTTTCCGAAT 57.251 37.500 0.00 0.00 0.00 3.34
856 871 6.555463 AATCTCACCCTATAAGTTTCCGAA 57.445 37.500 0.00 0.00 0.00 4.30
857 872 5.221185 CGAATCTCACCCTATAAGTTTCCGA 60.221 44.000 0.00 0.00 0.00 4.55
858 873 4.982916 CGAATCTCACCCTATAAGTTTCCG 59.017 45.833 0.00 0.00 0.00 4.30
859 874 5.298347 CCGAATCTCACCCTATAAGTTTCC 58.702 45.833 0.00 0.00 0.00 3.13
860 875 4.750598 GCCGAATCTCACCCTATAAGTTTC 59.249 45.833 0.00 0.00 0.00 2.78
861 876 4.444449 GGCCGAATCTCACCCTATAAGTTT 60.444 45.833 0.00 0.00 0.00 2.66
862 877 3.071167 GGCCGAATCTCACCCTATAAGTT 59.929 47.826 0.00 0.00 0.00 2.66
863 878 2.633481 GGCCGAATCTCACCCTATAAGT 59.367 50.000 0.00 0.00 0.00 2.24
864 879 2.900546 AGGCCGAATCTCACCCTATAAG 59.099 50.000 0.00 0.00 0.00 1.73
865 880 2.972348 AGGCCGAATCTCACCCTATAA 58.028 47.619 0.00 0.00 0.00 0.98
866 881 2.696526 AGGCCGAATCTCACCCTATA 57.303 50.000 0.00 0.00 0.00 1.31
867 882 2.696526 TAGGCCGAATCTCACCCTAT 57.303 50.000 0.00 0.00 0.00 2.57
868 883 2.464796 TTAGGCCGAATCTCACCCTA 57.535 50.000 0.00 0.00 0.00 3.53
869 884 1.807814 ATTAGGCCGAATCTCACCCT 58.192 50.000 5.09 0.00 0.00 4.34
870 885 2.613223 GCTATTAGGCCGAATCTCACCC 60.613 54.545 14.98 0.00 0.00 4.61
871 886 2.037251 TGCTATTAGGCCGAATCTCACC 59.963 50.000 14.98 1.38 0.00 4.02
872 887 3.386768 TGCTATTAGGCCGAATCTCAC 57.613 47.619 14.98 4.05 0.00 3.51
873 888 4.415881 TTTGCTATTAGGCCGAATCTCA 57.584 40.909 14.98 10.88 0.00 3.27
874 889 5.948992 AATTTGCTATTAGGCCGAATCTC 57.051 39.130 14.98 8.47 0.00 2.75
875 890 5.010012 CCAAATTTGCTATTAGGCCGAATCT 59.990 40.000 14.98 0.00 0.00 2.40
876 891 5.222631 CCAAATTTGCTATTAGGCCGAATC 58.777 41.667 14.98 2.37 0.00 2.52
877 892 4.501400 GCCAAATTTGCTATTAGGCCGAAT 60.501 41.667 15.84 15.84 34.71 3.34
878 893 3.181480 GCCAAATTTGCTATTAGGCCGAA 60.181 43.478 12.92 0.00 34.71 4.30
879 894 2.360801 GCCAAATTTGCTATTAGGCCGA 59.639 45.455 12.92 0.00 34.71 5.54
880 895 2.100584 TGCCAAATTTGCTATTAGGCCG 59.899 45.455 12.92 0.00 39.85 6.13
881 896 3.817709 TGCCAAATTTGCTATTAGGCC 57.182 42.857 12.92 0.00 39.85 5.19
882 897 4.758688 ACTTGCCAAATTTGCTATTAGGC 58.241 39.130 12.92 9.35 40.93 3.93
883 898 7.816995 TGTAAACTTGCCAAATTTGCTATTAGG 59.183 33.333 12.92 0.00 0.00 2.69
884 899 8.647226 GTGTAAACTTGCCAAATTTGCTATTAG 58.353 33.333 12.92 7.39 0.00 1.73
885 900 8.144478 TGTGTAAACTTGCCAAATTTGCTATTA 58.856 29.630 12.92 3.52 0.00 0.98
886 901 6.989169 TGTGTAAACTTGCCAAATTTGCTATT 59.011 30.769 12.92 4.37 0.00 1.73
887 902 6.520272 TGTGTAAACTTGCCAAATTTGCTAT 58.480 32.000 12.92 0.00 0.00 2.97
888 903 5.907207 TGTGTAAACTTGCCAAATTTGCTA 58.093 33.333 12.92 4.91 0.00 3.49
889 904 4.764172 TGTGTAAACTTGCCAAATTTGCT 58.236 34.783 12.92 0.00 0.00 3.91
890 905 5.476752 TTGTGTAAACTTGCCAAATTTGC 57.523 34.783 12.92 8.88 0.00 3.68
914 929 9.660180 TGTCTAACTTGCAAAATTTACCTTTTT 57.340 25.926 0.00 0.00 0.00 1.94
915 930 9.313118 CTGTCTAACTTGCAAAATTTACCTTTT 57.687 29.630 0.00 0.00 0.00 2.27
916 931 7.438160 GCTGTCTAACTTGCAAAATTTACCTTT 59.562 33.333 0.00 0.00 0.00 3.11
917 932 6.923508 GCTGTCTAACTTGCAAAATTTACCTT 59.076 34.615 0.00 0.00 0.00 3.50
918 933 6.447162 GCTGTCTAACTTGCAAAATTTACCT 58.553 36.000 0.00 0.00 0.00 3.08
919 934 5.342259 CGCTGTCTAACTTGCAAAATTTACC 59.658 40.000 0.00 0.00 0.00 2.85
920 935 6.086371 GTCGCTGTCTAACTTGCAAAATTTAC 59.914 38.462 0.00 0.00 0.00 2.01
921 936 6.017440 AGTCGCTGTCTAACTTGCAAAATTTA 60.017 34.615 0.00 0.00 0.00 1.40
922 937 4.976116 GTCGCTGTCTAACTTGCAAAATTT 59.024 37.500 0.00 0.00 0.00 1.82
923 938 4.275936 AGTCGCTGTCTAACTTGCAAAATT 59.724 37.500 0.00 0.36 0.00 1.82
924 939 3.815401 AGTCGCTGTCTAACTTGCAAAAT 59.185 39.130 0.00 0.00 0.00 1.82
925 940 3.202906 AGTCGCTGTCTAACTTGCAAAA 58.797 40.909 0.00 0.00 0.00 2.44
926 941 2.833794 AGTCGCTGTCTAACTTGCAAA 58.166 42.857 0.00 0.00 0.00 3.68
927 942 2.526304 AGTCGCTGTCTAACTTGCAA 57.474 45.000 0.00 0.00 0.00 4.08
928 943 2.135139 CAAGTCGCTGTCTAACTTGCA 58.865 47.619 1.96 0.00 42.23 4.08
929 944 2.863658 CAAGTCGCTGTCTAACTTGC 57.136 50.000 1.96 0.00 42.23 4.01
931 946 4.850347 ACTACAAGTCGCTGTCTAACTT 57.150 40.909 0.00 0.00 33.63 2.66
932 947 4.850347 AACTACAAGTCGCTGTCTAACT 57.150 40.909 0.00 0.00 0.00 2.24
933 948 4.980434 TCAAACTACAAGTCGCTGTCTAAC 59.020 41.667 0.00 0.00 0.00 2.34
934 949 5.190992 TCAAACTACAAGTCGCTGTCTAA 57.809 39.130 0.00 0.00 0.00 2.10
935 950 4.841443 TCAAACTACAAGTCGCTGTCTA 57.159 40.909 0.00 0.00 0.00 2.59
936 951 3.728076 TCAAACTACAAGTCGCTGTCT 57.272 42.857 0.00 0.00 0.00 3.41
937 952 4.238514 AGATCAAACTACAAGTCGCTGTC 58.761 43.478 0.00 0.00 0.00 3.51
938 953 4.238514 GAGATCAAACTACAAGTCGCTGT 58.761 43.478 0.00 0.00 0.00 4.40
939 954 4.237724 TGAGATCAAACTACAAGTCGCTG 58.762 43.478 0.00 0.00 0.00 5.18
940 955 4.521130 TGAGATCAAACTACAAGTCGCT 57.479 40.909 0.00 0.00 0.00 4.93
941 956 5.591643 TTTGAGATCAAACTACAAGTCGC 57.408 39.130 3.91 0.00 40.55 5.19
948 963 9.916397 CCGTGTTATATTTTGAGATCAAACTAC 57.084 33.333 7.49 0.14 44.56 2.73
949 964 9.878667 TCCGTGTTATATTTTGAGATCAAACTA 57.121 29.630 7.49 7.52 44.56 2.24
950 965 8.786826 TCCGTGTTATATTTTGAGATCAAACT 57.213 30.769 7.49 5.57 44.56 2.66
951 966 8.665685 ACTCCGTGTTATATTTTGAGATCAAAC 58.334 33.333 7.49 0.00 44.56 2.93
952 967 8.786826 ACTCCGTGTTATATTTTGAGATCAAA 57.213 30.769 3.91 3.91 43.36 2.69
953 968 9.309516 GTACTCCGTGTTATATTTTGAGATCAA 57.690 33.333 0.00 0.00 0.00 2.57
954 969 8.471609 TGTACTCCGTGTTATATTTTGAGATCA 58.528 33.333 0.00 0.00 0.00 2.92
955 970 8.867112 TGTACTCCGTGTTATATTTTGAGATC 57.133 34.615 0.00 0.00 0.00 2.75
956 971 9.095065 GTTGTACTCCGTGTTATATTTTGAGAT 57.905 33.333 0.00 0.00 0.00 2.75
957 972 8.089597 TGTTGTACTCCGTGTTATATTTTGAGA 58.910 33.333 0.00 0.00 0.00 3.27
958 973 8.166706 GTGTTGTACTCCGTGTTATATTTTGAG 58.833 37.037 0.00 0.00 0.00 3.02
959 974 7.874016 AGTGTTGTACTCCGTGTTATATTTTGA 59.126 33.333 0.00 0.00 33.17 2.69
960 975 8.025243 AGTGTTGTACTCCGTGTTATATTTTG 57.975 34.615 0.00 0.00 33.17 2.44
961 976 9.143631 GTAGTGTTGTACTCCGTGTTATATTTT 57.856 33.333 0.00 0.00 40.89 1.82
962 977 7.761249 GGTAGTGTTGTACTCCGTGTTATATTT 59.239 37.037 0.00 0.00 40.89 1.40
963 978 7.093814 TGGTAGTGTTGTACTCCGTGTTATATT 60.094 37.037 0.00 0.00 40.89 1.28
964 979 6.377996 TGGTAGTGTTGTACTCCGTGTTATAT 59.622 38.462 0.00 0.00 40.89 0.86
965 980 5.709631 TGGTAGTGTTGTACTCCGTGTTATA 59.290 40.000 0.00 0.00 40.89 0.98
966 981 4.523943 TGGTAGTGTTGTACTCCGTGTTAT 59.476 41.667 0.00 0.00 40.89 1.89
967 982 3.888323 TGGTAGTGTTGTACTCCGTGTTA 59.112 43.478 0.00 0.00 40.89 2.41
968 983 2.694628 TGGTAGTGTTGTACTCCGTGTT 59.305 45.455 0.00 0.00 40.89 3.32
969 984 2.035066 GTGGTAGTGTTGTACTCCGTGT 59.965 50.000 0.00 0.00 40.89 4.49
970 985 2.669364 GTGGTAGTGTTGTACTCCGTG 58.331 52.381 0.00 0.00 40.89 4.94
1050 1066 0.460311 ATCGAAGCGTGAAGGTAGGG 59.540 55.000 0.00 0.00 0.00 3.53
1161 1179 1.233019 CCATTGATCACCATCTCCGC 58.767 55.000 0.00 0.00 0.00 5.54
1162 1180 1.233019 GCCATTGATCACCATCTCCG 58.767 55.000 0.00 0.00 0.00 4.63
1164 1182 2.158711 TCAGGCCATTGATCACCATCTC 60.159 50.000 5.01 0.00 0.00 2.75
1165 1183 1.848388 TCAGGCCATTGATCACCATCT 59.152 47.619 5.01 0.00 0.00 2.90
1178 1196 1.078918 CAGCTCGTTCATCAGGCCA 60.079 57.895 5.01 0.00 0.00 5.36
1689 1707 1.064906 CATGTGCATCTTGAGGTCCCT 60.065 52.381 0.00 0.00 0.00 4.20
1859 1877 3.081409 AGGTACCCGCGCTTCCAT 61.081 61.111 8.74 0.00 0.00 3.41
1964 1982 0.393077 AGTTGGACTTGACCTCCGTG 59.607 55.000 0.00 0.00 0.00 4.94
1967 1985 0.037232 CCGAGTTGGACTTGACCTCC 60.037 60.000 0.00 0.00 42.00 4.30
2045 2063 1.079612 CAGGTCGATGCTGCAGTCA 60.080 57.895 16.64 14.12 0.00 3.41
2066 2084 4.020617 CCTTCCTGGCCACGCTGA 62.021 66.667 0.00 0.00 0.00 4.26
2207 2250 4.436050 CGGATTGAGTTATTGACACAGCAC 60.436 45.833 0.00 0.00 30.44 4.40
2209 2252 3.063997 CCGGATTGAGTTATTGACACAGC 59.936 47.826 0.00 0.00 30.44 4.40
2210 2253 3.623060 CCCGGATTGAGTTATTGACACAG 59.377 47.826 0.73 0.00 30.44 3.66
2211 2254 3.605634 CCCGGATTGAGTTATTGACACA 58.394 45.455 0.73 0.00 0.00 3.72
2212 2255 2.943033 CCCCGGATTGAGTTATTGACAC 59.057 50.000 0.73 0.00 0.00 3.67
2213 2256 2.841266 TCCCCGGATTGAGTTATTGACA 59.159 45.455 0.73 0.00 0.00 3.58
2214 2257 3.553828 TCCCCGGATTGAGTTATTGAC 57.446 47.619 0.73 0.00 0.00 3.18
2216 2259 3.815401 GTCATCCCCGGATTGAGTTATTG 59.185 47.826 0.73 0.00 31.62 1.90
2217 2260 3.181443 GGTCATCCCCGGATTGAGTTATT 60.181 47.826 0.73 0.00 31.62 1.40
2220 2263 0.546598 GGTCATCCCCGGATTGAGTT 59.453 55.000 0.73 0.00 31.62 3.01
2222 2265 0.107456 CAGGTCATCCCCGGATTGAG 59.893 60.000 0.73 0.00 31.62 3.02
2224 2267 0.767375 ATCAGGTCATCCCCGGATTG 59.233 55.000 0.73 0.00 36.18 2.67
2225 2268 1.522900 AATCAGGTCATCCCCGGATT 58.477 50.000 0.73 0.00 42.32 3.01
2226 2269 1.143684 CAAATCAGGTCATCCCCGGAT 59.856 52.381 0.73 0.00 40.56 4.18
2238 2281 4.211794 GGCAAAATCAACACACAAATCAGG 59.788 41.667 0.00 0.00 0.00 3.86
2241 2284 4.047822 TCGGCAAAATCAACACACAAATC 58.952 39.130 0.00 0.00 0.00 2.17
2250 2293 2.034053 TCACCTGTTCGGCAAAATCAAC 59.966 45.455 0.00 0.00 35.61 3.18
2251 2294 2.034053 GTCACCTGTTCGGCAAAATCAA 59.966 45.455 0.00 0.00 35.61 2.57
2252 2295 1.606668 GTCACCTGTTCGGCAAAATCA 59.393 47.619 0.00 0.00 35.61 2.57
2253 2296 1.399727 CGTCACCTGTTCGGCAAAATC 60.400 52.381 0.00 0.00 35.61 2.17
2260 2303 0.249322 AGACAACGTCACCTGTTCGG 60.249 55.000 0.00 0.00 34.60 4.30
2387 11019 2.123428 GTGCATGTCCATCCTGCCC 61.123 63.158 0.00 0.00 36.98 5.36
2576 11208 1.064946 GACGAGATCACTGAGGGCG 59.935 63.158 0.00 0.00 0.00 6.13
2579 11211 1.032657 ACCCGACGAGATCACTGAGG 61.033 60.000 0.00 0.00 0.00 3.86
2582 11214 0.179134 GGAACCCGACGAGATCACTG 60.179 60.000 0.00 0.00 0.00 3.66
2660 11292 7.373617 TGTCTGCTCATATTTATCCACCTTA 57.626 36.000 0.00 0.00 0.00 2.69
2823 11455 1.279271 CCCGCCATTATTCCTCCCTAG 59.721 57.143 0.00 0.00 0.00 3.02
2852 11484 1.956477 TCGATGAGATCTCGGATTGCA 59.044 47.619 17.76 0.00 36.78 4.08
2897 11529 0.888736 CACCATTGTTCTCACCGGCA 60.889 55.000 0.00 0.00 0.00 5.69
2918 11550 3.222603 GTTGTGGTTTCCATCTTGGTCT 58.777 45.455 0.00 0.00 39.03 3.85
2919 11551 2.031157 CGTTGTGGTTTCCATCTTGGTC 60.031 50.000 0.00 0.00 39.03 4.02
2939 11571 6.455647 TGTCTGCTCCTATTTATTATCACCG 58.544 40.000 0.00 0.00 0.00 4.94
2958 11590 6.651225 AGAGCATGATATGATGTCATTGTCTG 59.349 38.462 1.64 0.00 37.76 3.51
2968 11600 9.622004 GTAAAATTTCCAGAGCATGATATGATG 57.378 33.333 7.25 0.00 0.00 3.07
3035 11667 6.866770 GGCACGAGTACATTTATATAGCAGAA 59.133 38.462 0.00 0.00 0.00 3.02
3125 11757 8.631797 ACTAAGTGCCTTATTAGTAGCTCTAAC 58.368 37.037 0.00 0.00 39.77 2.34
3128 11760 7.045126 CACTAAGTGCCTTATTAGTAGCTCT 57.955 40.000 0.00 0.00 39.59 4.09
3201 13030 5.522456 TCTTGAGACAAATGCATGTGTTTC 58.478 37.500 26.31 26.31 32.57 2.78
3224 13053 1.470098 GGCGATTGTTCAGACATTGCT 59.530 47.619 0.00 0.00 35.29 3.91
3238 13067 2.048444 AGCATCAAGACATGGCGATT 57.952 45.000 0.00 0.00 0.00 3.34
3345 13174 8.061857 GCCGTTTTCAATCTTAAAAGGAAAAAG 58.938 33.333 0.00 0.00 38.66 2.27
3372 13202 5.691754 GCTTGGTTTTGATCGACTTGATTTT 59.308 36.000 0.00 0.00 37.47 1.82
3384 13214 3.882888 TGAAGAGTTCGCTTGGTTTTGAT 59.117 39.130 0.00 0.00 0.00 2.57
3415 13245 3.616821 TCGAAAATCTAATGGTCTGTGCG 59.383 43.478 0.00 0.00 0.00 5.34
3419 13249 8.970691 AACATTTTCGAAAATCTAATGGTCTG 57.029 30.769 28.70 18.79 36.52 3.51
3521 13351 2.543777 ACGTGGCACTAGAAACATGT 57.456 45.000 16.72 0.00 0.00 3.21
3536 13366 0.179100 CATCAGGCCAGTCCTACGTG 60.179 60.000 5.01 0.00 45.52 4.49
3576 13406 1.602323 GGTGAAATGGCCGTGTGGA 60.602 57.895 0.00 0.00 37.49 4.02
3587 13417 0.405585 CCCCTCCTGTGTGGTGAAAT 59.594 55.000 0.00 0.00 37.07 2.17
3615 13445 3.423154 CGAACTGCTGAACGCCCC 61.423 66.667 0.00 0.00 38.05 5.80
3659 13489 2.018355 TGCCCACACACTAGTCCTTA 57.982 50.000 0.00 0.00 0.00 2.69
3664 13494 1.247567 GCAAATGCCCACACACTAGT 58.752 50.000 0.00 0.00 34.31 2.57
3760 13590 4.523083 CTTATAAAGCACACTAGGGGCAA 58.477 43.478 7.99 0.00 0.00 4.52
3761 13591 4.150897 CTTATAAAGCACACTAGGGGCA 57.849 45.455 7.99 0.00 0.00 5.36
3789 13619 5.677852 GCAACTCGGGTAAAAAGAAAGTTGT 60.678 40.000 12.33 0.00 42.41 3.32
3795 13625 2.933573 TGGCAACTCGGGTAAAAAGAA 58.066 42.857 0.00 0.00 37.61 2.52
3825 13656 2.325082 GCAGTTGCCGTGTACCCTG 61.325 63.158 0.00 0.00 34.31 4.45
3836 13667 1.576421 GTGCACACTAGGCAGTTGC 59.424 57.895 13.17 0.00 42.85 4.17
3857 13688 2.875094 AAGAGAGTTGCCATCTGCTT 57.125 45.000 0.00 0.00 42.00 3.91
3858 13689 2.875094 AAAGAGAGTTGCCATCTGCT 57.125 45.000 0.00 0.00 42.00 4.24
3901 13732 2.797177 TGCAGTTGCCATGTACCATA 57.203 45.000 1.06 0.00 41.18 2.74
3920 13751 3.687698 CCCTCGTCCATGTTCGTTTAATT 59.312 43.478 6.65 0.00 0.00 1.40
3921 13752 3.267483 CCCTCGTCCATGTTCGTTTAAT 58.733 45.455 6.65 0.00 0.00 1.40
4020 14120 2.147958 GAAGTTGATAACGCCCACACA 58.852 47.619 0.00 0.00 36.23 3.72
4049 14149 2.214181 GATCCCTCTCACACGCGTGT 62.214 60.000 37.52 37.52 46.17 4.49
4115 14215 0.605589 GGAACAGCCCACACACCTAC 60.606 60.000 0.00 0.00 0.00 3.18
4133 14233 6.817765 ACATTTTGTGTGGTGTATAAGAGG 57.182 37.500 0.00 0.00 40.28 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.