Multiple sequence alignment - TraesCS1B01G464000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G464000 chr1B 100.000 6372 0 0 1 6372 675768522 675762151 0.000000e+00 11767.0
1 TraesCS1B01G464000 chr1B 82.695 1254 158 24 780 2020 675746058 675744851 0.000000e+00 1059.0
2 TraesCS1B01G464000 chr1B 81.257 875 130 17 1233 2096 4037546 4036695 0.000000e+00 676.0
3 TraesCS1B01G464000 chr1B 77.561 1230 205 38 3507 4723 675743621 675742450 0.000000e+00 676.0
4 TraesCS1B01G464000 chr1B 76.143 1291 245 43 2207 3463 675744854 675743593 2.520000e-173 619.0
5 TraesCS1B01G464000 chr1B 81.416 226 31 8 5110 5332 675742254 675742037 2.360000e-39 174.0
6 TraesCS1B01G464000 chr1B 92.857 70 5 0 3431 3500 675765056 675764987 1.130000e-17 102.0
7 TraesCS1B01G464000 chr1B 92.857 70 5 0 3467 3536 675765092 675765023 1.130000e-17 102.0
8 TraesCS1B01G464000 chr1B 100.000 33 0 0 2236 2268 161324579 161324611 1.920000e-05 62.1
9 TraesCS1B01G464000 chr1A 89.368 3480 216 60 93 3534 582661839 582658476 0.000000e+00 4235.0
10 TraesCS1B01G464000 chr1A 90.515 2678 141 47 3429 6044 582658548 582655922 0.000000e+00 3434.0
11 TraesCS1B01G464000 chr1A 79.488 4256 641 138 780 4935 582652541 582648418 0.000000e+00 2809.0
12 TraesCS1B01G464000 chr1A 92.969 128 7 1 2933 3060 315265607 315265482 1.090000e-42 185.0
13 TraesCS1B01G464000 chr1A 92.754 69 5 0 3432 3500 582658506 582658438 4.060000e-17 100.0
14 TraesCS1B01G464000 chr1A 89.041 73 5 1 3467 3536 582658582 582658510 3.160000e-13 87.9
15 TraesCS1B01G464000 chr1D 94.015 2807 107 29 735 3534 485480191 485477439 0.000000e+00 4196.0
16 TraesCS1B01G464000 chr1D 92.495 2212 89 25 3431 5598 485477506 485475328 0.000000e+00 3094.0
17 TraesCS1B01G464000 chr1D 79.971 2736 409 66 786 3463 485440565 485437911 0.000000e+00 1888.0
18 TraesCS1B01G464000 chr1D 92.308 793 43 4 5588 6371 485475309 485474526 0.000000e+00 1110.0
19 TraesCS1B01G464000 chr1D 81.088 772 121 16 3507 4266 485437939 485437181 1.530000e-165 593.0
20 TraesCS1B01G464000 chr1D 81.858 226 30 8 5110 5332 485436535 485436318 5.080000e-41 180.0
21 TraesCS1B01G464000 chr1D 74.861 541 64 31 90 612 485480766 485480280 5.080000e-41 180.0
22 TraesCS1B01G464000 chr1D 77.612 201 36 6 780 973 485441201 485441003 5.220000e-21 113.0
23 TraesCS1B01G464000 chr1D 92.857 70 5 0 3467 3536 485477542 485477473 1.130000e-17 102.0
24 TraesCS1B01G464000 chr3A 89.072 787 76 6 751 1531 38508118 38507336 0.000000e+00 968.0
25 TraesCS1B01G464000 chr3A 92.188 128 8 1 2933 3060 707698526 707698651 5.080000e-41 180.0
26 TraesCS1B01G464000 chr3A 92.188 128 8 1 2933 3060 707732608 707732733 5.080000e-41 180.0
27 TraesCS1B01G464000 chr3A 92.188 128 8 1 2933 3060 707761623 707761748 5.080000e-41 180.0
28 TraesCS1B01G464000 chr7A 88.184 804 80 10 735 1531 643528262 643527467 0.000000e+00 944.0
29 TraesCS1B01G464000 chr5A 87.687 804 86 8 735 1531 565027039 565027836 0.000000e+00 924.0
30 TraesCS1B01G464000 chr5B 82.626 990 146 12 1135 2113 255899110 255898136 0.000000e+00 852.0
31 TraesCS1B01G464000 chr5D 81.871 1026 157 17 1102 2113 540004688 540005698 0.000000e+00 837.0
32 TraesCS1B01G464000 chr7B 80.976 1025 151 17 1101 2113 698306712 698305720 0.000000e+00 773.0
33 TraesCS1B01G464000 chr7D 82.487 788 114 14 1321 2097 41525006 41524232 0.000000e+00 669.0
34 TraesCS1B01G464000 chr7D 100.000 33 0 0 2236 2268 41524088 41524056 1.920000e-05 62.1
35 TraesCS1B01G464000 chr6A 93.750 128 6 1 2933 3060 426256742 426256617 2.340000e-44 191.0
36 TraesCS1B01G464000 chrUn 92.188 128 8 1 2933 3060 303636846 303636721 5.080000e-41 180.0
37 TraesCS1B01G464000 chrUn 92.188 128 8 1 2933 3060 417910175 417910050 5.080000e-41 180.0
38 TraesCS1B01G464000 chrUn 100.000 33 0 0 2236 2268 303636920 303636888 1.920000e-05 62.1
39 TraesCS1B01G464000 chrUn 100.000 33 0 0 2236 2268 417910249 417910217 1.920000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G464000 chr1B 675762151 675768522 6371 True 3990.333333 11767 95.23800 1 6372 3 chr1B.!!$R3 6371
1 TraesCS1B01G464000 chr1B 4036695 4037546 851 True 676.000000 676 81.25700 1233 2096 1 chr1B.!!$R1 863
2 TraesCS1B01G464000 chr1B 675742037 675746058 4021 True 632.000000 1059 79.45375 780 5332 4 chr1B.!!$R2 4552
3 TraesCS1B01G464000 chr1A 582648418 582661839 13421 True 2133.180000 4235 88.23320 93 6044 5 chr1A.!!$R2 5951
4 TraesCS1B01G464000 chr1D 485474526 485480766 6240 True 1736.400000 4196 89.30720 90 6371 5 chr1D.!!$R2 6281
5 TraesCS1B01G464000 chr1D 485436318 485441201 4883 True 693.500000 1888 80.13225 780 5332 4 chr1D.!!$R1 4552
6 TraesCS1B01G464000 chr3A 38507336 38508118 782 True 968.000000 968 89.07200 751 1531 1 chr3A.!!$R1 780
7 TraesCS1B01G464000 chr7A 643527467 643528262 795 True 944.000000 944 88.18400 735 1531 1 chr7A.!!$R1 796
8 TraesCS1B01G464000 chr5A 565027039 565027836 797 False 924.000000 924 87.68700 735 1531 1 chr5A.!!$F1 796
9 TraesCS1B01G464000 chr5B 255898136 255899110 974 True 852.000000 852 82.62600 1135 2113 1 chr5B.!!$R1 978
10 TraesCS1B01G464000 chr5D 540004688 540005698 1010 False 837.000000 837 81.87100 1102 2113 1 chr5D.!!$F1 1011
11 TraesCS1B01G464000 chr7B 698305720 698306712 992 True 773.000000 773 80.97600 1101 2113 1 chr7B.!!$R1 1012
12 TraesCS1B01G464000 chr7D 41524056 41525006 950 True 365.550000 669 91.24350 1321 2268 2 chr7D.!!$R1 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.040870 CACCCTCGATCGATCACTCG 60.041 60.0 24.40 12.74 46.41 4.18 F
661 681 0.105142 AGGATCCCCTAAGCCGCTTA 60.105 55.0 8.55 12.28 42.15 3.09 F
859 900 0.386113 TTGCGCAACACCCTAAAACC 59.614 50.0 21.02 0.00 0.00 3.27 F
997 1049 0.726256 GAGCTAGCAGCAGTGAAAGC 59.274 55.0 18.83 0.00 45.56 3.51 F
2855 11649 0.687354 ATCTCCAAACTCGTGCTGGT 59.313 50.0 6.21 0.00 0.00 4.00 F
3964 12907 0.039256 CACACGATGGTTTTGGCCAG 60.039 55.0 5.11 0.00 42.47 4.85 F
4040 12992 0.395862 TGGTGCCGGAAAAGAACCAA 60.396 50.0 5.05 0.00 37.96 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1451 0.537188 ACGGCTTCGACATCAGGATT 59.463 50.000 0.0 0.0 37.63 3.01 R
1720 10437 3.184382 TGAATCAGACACCCTGGTCTA 57.816 47.619 0.0 0.0 46.05 2.59 R
2775 11569 3.141398 GCATGTCACTCTCAAACCTTGA 58.859 45.455 0.0 0.0 38.17 3.02 R
2979 11779 0.741221 CCTCCGGTGTAGAGCTTTGC 60.741 60.000 0.0 0.0 0.00 3.68 R
4020 12972 0.821711 TGGTTCTTTTCCGGCACCAG 60.822 55.000 0.0 0.0 32.38 4.00 R
5148 14147 0.179067 TTTTCGGTGTCGGCAAGAGT 60.179 50.000 0.0 0.0 36.95 3.24 R
5943 14992 0.533491 CCCAGCAACCATGACATTGG 59.467 55.000 0.0 0.0 42.82 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.175988 TCCCACCCTCGATCGATC 57.824 61.111 19.78 15.68 0.00 3.69
18 19 1.229076 TCCCACCCTCGATCGATCA 59.771 57.895 24.40 11.08 0.00 2.92
21 22 0.312416 CCACCCTCGATCGATCACTC 59.688 60.000 24.40 0.00 0.00 3.51
22 23 0.040870 CACCCTCGATCGATCACTCG 60.041 60.000 24.40 12.74 46.41 4.18
23 24 0.464013 ACCCTCGATCGATCACTCGT 60.464 55.000 24.40 11.92 45.25 4.18
26 27 0.236187 CTCGATCGATCACTCGTCCC 59.764 60.000 24.40 0.00 45.25 4.46
27 28 0.179054 TCGATCGATCACTCGTCCCT 60.179 55.000 24.40 0.00 45.25 4.20
28 29 0.040870 CGATCGATCACTCGTCCCTG 60.041 60.000 24.40 0.96 45.25 4.45
29 30 1.025812 GATCGATCACTCGTCCCTGT 58.974 55.000 20.52 0.00 45.25 4.00
30 31 0.741326 ATCGATCACTCGTCCCTGTG 59.259 55.000 0.00 0.00 45.25 3.66
31 32 1.139734 CGATCACTCGTCCCTGTGG 59.860 63.158 0.00 0.00 40.07 4.17
32 33 1.313091 CGATCACTCGTCCCTGTGGA 61.313 60.000 0.00 0.00 40.07 4.02
33 34 1.115467 GATCACTCGTCCCTGTGGAT 58.885 55.000 0.00 0.00 44.28 3.41
34 35 1.482593 GATCACTCGTCCCTGTGGATT 59.517 52.381 0.00 0.00 44.28 3.01
36 37 1.021390 CACTCGTCCCTGTGGATTGC 61.021 60.000 0.00 0.00 44.28 3.56
37 38 1.450312 CTCGTCCCTGTGGATTGCC 60.450 63.158 0.00 0.00 44.28 4.52
38 39 2.438434 CGTCCCTGTGGATTGCCC 60.438 66.667 0.00 0.00 44.28 5.36
39 40 2.438434 GTCCCTGTGGATTGCCCG 60.438 66.667 0.00 0.00 44.28 6.13
43 44 1.303236 CCTGTGGATTGCCCGTTGA 60.303 57.895 0.00 0.00 37.93 3.18
44 45 0.893270 CCTGTGGATTGCCCGTTGAA 60.893 55.000 0.00 0.00 37.93 2.69
45 46 0.958091 CTGTGGATTGCCCGTTGAAA 59.042 50.000 0.00 0.00 37.93 2.69
46 47 0.671251 TGTGGATTGCCCGTTGAAAC 59.329 50.000 0.00 0.00 37.93 2.78
47 48 0.958822 GTGGATTGCCCGTTGAAACT 59.041 50.000 0.00 0.00 37.93 2.66
48 49 1.339929 GTGGATTGCCCGTTGAAACTT 59.660 47.619 0.00 0.00 37.93 2.66
49 50 1.611491 TGGATTGCCCGTTGAAACTTC 59.389 47.619 0.00 0.00 37.93 3.01
50 51 1.067846 GGATTGCCCGTTGAAACTTCC 60.068 52.381 0.00 0.00 0.00 3.46
52 53 0.748729 TTGCCCGTTGAAACTTCCGT 60.749 50.000 0.00 0.00 0.00 4.69
53 54 1.161563 TGCCCGTTGAAACTTCCGTC 61.162 55.000 0.00 0.00 0.00 4.79
54 55 1.857364 CCCGTTGAAACTTCCGTCG 59.143 57.895 0.00 0.00 0.00 5.12
55 56 1.562575 CCCGTTGAAACTTCCGTCGG 61.563 60.000 4.39 4.39 35.28 4.79
57 58 0.782384 CGTTGAAACTTCCGTCGGAG 59.218 55.000 14.79 11.16 31.21 4.63
59 60 2.685100 GTTGAAACTTCCGTCGGAGAT 58.315 47.619 14.79 3.69 40.67 2.75
60 61 2.649331 TGAAACTTCCGTCGGAGATC 57.351 50.000 14.79 11.52 40.67 2.75
61 62 1.135489 TGAAACTTCCGTCGGAGATCG 60.135 52.381 14.79 7.18 40.67 3.69
63 64 2.026301 CTTCCGTCGGAGATCGGC 59.974 66.667 14.79 0.00 45.71 5.54
64 65 3.486252 CTTCCGTCGGAGATCGGCC 62.486 68.421 14.79 0.00 45.71 6.13
178 182 0.530650 TTGATTGCTCGGATCGCTCC 60.531 55.000 0.00 0.00 38.29 4.70
222 240 4.760220 CAGCCCCTACCCCACCCT 62.760 72.222 0.00 0.00 0.00 4.34
223 241 2.962264 AGCCCCTACCCCACCCTA 60.962 66.667 0.00 0.00 0.00 3.53
225 243 2.040148 CCCCTACCCCACCCTACC 60.040 72.222 0.00 0.00 0.00 3.18
227 245 2.691732 CCTACCCCACCCTACCGA 59.308 66.667 0.00 0.00 0.00 4.69
255 273 4.025401 GCGTGCAGTGGGTTTCCG 62.025 66.667 0.00 0.00 35.24 4.30
269 287 3.047093 GGTTTCCGTGTTTGAAATTCCG 58.953 45.455 0.00 0.00 34.50 4.30
273 291 2.359531 TCCGTGTTTGAAATTCCGCTTT 59.640 40.909 0.00 0.00 0.00 3.51
274 292 2.470999 CCGTGTTTGAAATTCCGCTTTG 59.529 45.455 0.00 0.00 0.00 2.77
281 299 2.887783 TGAAATTCCGCTTTGTTGCCTA 59.112 40.909 0.00 0.00 0.00 3.93
307 325 3.320610 TCTCTTTGGAGATCGATCCCT 57.679 47.619 21.66 4.15 42.95 4.20
308 326 3.647636 TCTCTTTGGAGATCGATCCCTT 58.352 45.455 21.66 3.34 42.95 3.95
309 327 4.033709 TCTCTTTGGAGATCGATCCCTTT 58.966 43.478 21.66 2.94 42.95 3.11
313 331 5.602561 TCTTTGGAGATCGATCCCTTTATCA 59.397 40.000 21.66 7.18 38.72 2.15
314 332 5.474578 TTGGAGATCGATCCCTTTATCAG 57.525 43.478 21.66 0.00 38.72 2.90
315 333 4.740902 TGGAGATCGATCCCTTTATCAGA 58.259 43.478 21.66 2.22 38.72 3.27
317 335 4.380023 GGAGATCGATCCCTTTATCAGACG 60.380 50.000 21.66 0.00 32.79 4.18
319 337 1.340248 TCGATCCCTTTATCAGACGCC 59.660 52.381 0.00 0.00 0.00 5.68
320 338 1.784525 GATCCCTTTATCAGACGCCG 58.215 55.000 0.00 0.00 0.00 6.46
322 340 0.458669 TCCCTTTATCAGACGCCGAC 59.541 55.000 0.00 0.00 0.00 4.79
323 341 0.529992 CCCTTTATCAGACGCCGACC 60.530 60.000 0.00 0.00 0.00 4.79
325 343 1.679680 CCTTTATCAGACGCCGACCTA 59.320 52.381 0.00 0.00 0.00 3.08
326 344 2.296471 CCTTTATCAGACGCCGACCTAT 59.704 50.000 0.00 0.00 0.00 2.57
327 345 3.309388 CTTTATCAGACGCCGACCTATG 58.691 50.000 0.00 0.00 0.00 2.23
328 346 2.265589 TATCAGACGCCGACCTATGA 57.734 50.000 0.00 0.00 0.00 2.15
330 348 0.393944 TCAGACGCCGACCTATGACT 60.394 55.000 0.00 0.00 0.00 3.41
331 349 1.134310 TCAGACGCCGACCTATGACTA 60.134 52.381 0.00 0.00 0.00 2.59
333 351 1.880675 AGACGCCGACCTATGACTATG 59.119 52.381 0.00 0.00 0.00 2.23
334 352 1.878088 GACGCCGACCTATGACTATGA 59.122 52.381 0.00 0.00 0.00 2.15
335 353 1.880675 ACGCCGACCTATGACTATGAG 59.119 52.381 0.00 0.00 0.00 2.90
337 355 1.613925 GCCGACCTATGACTATGAGCA 59.386 52.381 0.00 0.00 0.00 4.26
338 356 2.035961 GCCGACCTATGACTATGAGCAA 59.964 50.000 0.00 0.00 0.00 3.91
339 357 3.492656 GCCGACCTATGACTATGAGCAAA 60.493 47.826 0.00 0.00 0.00 3.68
340 358 4.800914 GCCGACCTATGACTATGAGCAAAT 60.801 45.833 0.00 0.00 0.00 2.32
341 359 5.566826 GCCGACCTATGACTATGAGCAAATA 60.567 44.000 0.00 0.00 0.00 1.40
342 360 6.096036 CCGACCTATGACTATGAGCAAATAG 58.904 44.000 4.58 4.58 36.40 1.73
343 361 6.294787 CCGACCTATGACTATGAGCAAATAGT 60.295 42.308 10.21 10.21 44.30 2.12
344 362 6.584184 CGACCTATGACTATGAGCAAATAGTG 59.416 42.308 14.12 4.53 42.22 2.74
358 376 4.910195 CAAATAGTGCCTCCATATGCCTA 58.090 43.478 0.00 0.00 0.00 3.93
370 388 7.310734 GCCTCCATATGCCTACTTAATTAGAGT 60.311 40.741 0.00 5.87 0.00 3.24
374 392 9.220767 CCATATGCCTACTTAATTAGAGTTTCC 57.779 37.037 0.00 0.00 0.00 3.13
394 412 5.947228 TCCTGTTTCTAAGCACAAGATTG 57.053 39.130 0.00 0.00 0.00 2.67
398 416 5.280945 TGTTTCTAAGCACAAGATTGTTGC 58.719 37.500 10.29 10.29 39.91 4.17
404 422 1.370414 ACAAGATTGTTGCGCGTGC 60.370 52.632 15.48 15.48 38.47 5.34
427 445 6.485984 TGCTGGTTAACGGAAATTAAGTTGTA 59.514 34.615 0.00 0.00 0.00 2.41
428 446 7.013083 TGCTGGTTAACGGAAATTAAGTTGTAA 59.987 33.333 0.00 0.00 0.00 2.41
475 493 2.956333 ACAACTAGTTTGGCTGGTTTCC 59.044 45.455 5.07 0.00 44.92 3.13
480 498 2.962859 AGTTTGGCTGGTTTCCAAGAT 58.037 42.857 0.00 0.00 43.67 2.40
483 501 0.482446 TGGCTGGTTTCCAAGATGGT 59.518 50.000 0.00 0.00 39.03 3.55
484 502 1.133199 TGGCTGGTTTCCAAGATGGTT 60.133 47.619 0.00 0.00 39.03 3.67
490 508 2.225727 GGTTTCCAAGATGGTTGTCGAC 59.774 50.000 9.11 9.11 39.03 4.20
492 510 2.163818 TCCAAGATGGTTGTCGACAC 57.836 50.000 19.90 13.28 39.03 3.67
496 514 3.618594 CCAAGATGGTTGTCGACACATAG 59.381 47.826 19.90 11.96 31.35 2.23
500 518 6.078202 AGATGGTTGTCGACACATAGATAG 57.922 41.667 19.90 0.00 30.55 2.08
504 522 4.681942 GGTTGTCGACACATAGATAGATGC 59.318 45.833 19.90 0.00 30.55 3.91
505 523 4.505313 TGTCGACACATAGATAGATGCC 57.495 45.455 15.76 0.00 0.00 4.40
506 524 3.888930 TGTCGACACATAGATAGATGCCA 59.111 43.478 15.76 0.00 0.00 4.92
507 525 4.340950 TGTCGACACATAGATAGATGCCAA 59.659 41.667 15.76 0.00 0.00 4.52
508 526 5.011023 TGTCGACACATAGATAGATGCCAAT 59.989 40.000 15.76 0.00 0.00 3.16
509 527 6.208599 TGTCGACACATAGATAGATGCCAATA 59.791 38.462 15.76 0.00 0.00 1.90
510 528 7.093771 TGTCGACACATAGATAGATGCCAATAT 60.094 37.037 15.76 0.00 0.00 1.28
511 529 8.406297 GTCGACACATAGATAGATGCCAATATA 58.594 37.037 11.55 0.00 0.00 0.86
512 530 9.136323 TCGACACATAGATAGATGCCAATATAT 57.864 33.333 0.00 0.00 0.00 0.86
521 539 9.945904 AGATAGATGCCAATATATATGCTCATG 57.054 33.333 0.00 0.00 0.00 3.07
522 540 9.722184 GATAGATGCCAATATATATGCTCATGT 57.278 33.333 0.00 2.13 0.00 3.21
523 541 7.803279 AGATGCCAATATATATGCTCATGTG 57.197 36.000 0.00 0.00 0.00 3.21
529 549 7.765819 GCCAATATATATGCTCATGTGAGTACA 59.234 37.037 11.35 2.88 43.85 2.90
540 560 8.084684 TGCTCATGTGAGTACATCTATATGTTC 58.915 37.037 11.35 0.00 45.53 3.18
541 561 7.543868 GCTCATGTGAGTACATCTATATGTTCC 59.456 40.741 11.35 0.00 45.53 3.62
564 584 2.357569 GGGATCCTTGTTCCAAGCTGAT 60.358 50.000 12.58 0.00 34.77 2.90
582 602 4.319046 GCTGATGATTTGCGTGTCGATTAT 60.319 41.667 0.00 0.00 0.00 1.28
583 603 5.733226 TGATGATTTGCGTGTCGATTATT 57.267 34.783 0.00 0.00 0.00 1.40
584 604 6.563939 GCTGATGATTTGCGTGTCGATTATTA 60.564 38.462 0.00 0.00 0.00 0.98
622 642 6.573664 ATTGCACATCTTAGCACTTGTAAA 57.426 33.333 0.00 0.00 41.05 2.01
623 643 6.573664 TTGCACATCTTAGCACTTGTAAAT 57.426 33.333 0.00 0.00 41.05 1.40
624 644 6.573664 TGCACATCTTAGCACTTGTAAATT 57.426 33.333 0.00 0.00 35.51 1.82
625 645 6.380995 TGCACATCTTAGCACTTGTAAATTG 58.619 36.000 0.00 0.00 35.51 2.32
626 646 6.016360 TGCACATCTTAGCACTTGTAAATTGT 60.016 34.615 0.00 0.00 35.51 2.71
627 647 7.174080 TGCACATCTTAGCACTTGTAAATTGTA 59.826 33.333 0.00 0.00 35.51 2.41
628 648 8.020819 GCACATCTTAGCACTTGTAAATTGTAA 58.979 33.333 0.00 0.00 0.00 2.41
637 657 9.502091 AGCACTTGTAAATTGTAATAGACTTGA 57.498 29.630 0.00 0.00 0.00 3.02
650 670 2.688477 AGACTTGATCTGAGGATCCCC 58.312 52.381 8.55 0.00 45.62 4.81
651 671 2.249743 AGACTTGATCTGAGGATCCCCT 59.750 50.000 8.55 0.00 45.62 4.79
652 672 3.469006 AGACTTGATCTGAGGATCCCCTA 59.531 47.826 8.55 0.00 45.62 3.53
653 673 4.078336 AGACTTGATCTGAGGATCCCCTAA 60.078 45.833 8.55 0.00 45.62 2.69
654 674 4.230455 ACTTGATCTGAGGATCCCCTAAG 58.770 47.826 8.55 6.55 45.62 2.18
656 676 1.905894 GATCTGAGGATCCCCTAAGCC 59.094 57.143 8.55 0.00 44.53 4.35
659 679 1.839296 GAGGATCCCCTAAGCCGCT 60.839 63.158 8.55 0.00 44.53 5.52
660 680 1.384643 AGGATCCCCTAAGCCGCTT 60.385 57.895 8.55 11.12 42.15 4.68
661 681 0.105142 AGGATCCCCTAAGCCGCTTA 60.105 55.000 8.55 12.28 42.15 3.09
662 682 0.763035 GGATCCCCTAAGCCGCTTAA 59.237 55.000 13.74 0.00 0.00 1.85
663 683 1.351350 GGATCCCCTAAGCCGCTTAAT 59.649 52.381 13.74 4.72 0.00 1.40
685 705 7.854934 AATTAGCGATCGTGAGTATTCTAAC 57.145 36.000 17.81 0.00 0.00 2.34
696 716 4.680702 GAGTATTCTAACTCAACGGTCCC 58.319 47.826 0.00 0.00 44.41 4.46
704 724 3.439540 CAACGGTCCCGGGCATTG 61.440 66.667 18.49 13.26 44.69 2.82
705 725 3.642503 AACGGTCCCGGGCATTGA 61.643 61.111 18.49 0.00 44.69 2.57
706 726 2.978946 AACGGTCCCGGGCATTGAT 61.979 57.895 18.49 0.00 44.69 2.57
707 727 2.591715 CGGTCCCGGGCATTGATC 60.592 66.667 18.49 0.00 35.56 2.92
715 735 1.806542 CCGGGCATTGATCGATTTAGG 59.193 52.381 0.00 0.00 0.00 2.69
718 738 2.224769 GGGCATTGATCGATTTAGGGGA 60.225 50.000 0.00 0.00 0.00 4.81
719 739 2.814336 GGCATTGATCGATTTAGGGGAC 59.186 50.000 0.00 0.00 0.00 4.46
721 741 3.251004 GCATTGATCGATTTAGGGGACAC 59.749 47.826 0.00 0.00 0.00 3.67
723 743 3.819564 TGATCGATTTAGGGGACACTG 57.180 47.619 0.00 0.00 0.00 3.66
739 776 3.626930 ACACTGAGGTTTTGGCTTACAA 58.373 40.909 0.00 0.00 37.28 2.41
744 781 5.128663 ACTGAGGTTTTGGCTTACAATTGTT 59.871 36.000 17.78 0.95 39.21 2.83
748 785 6.591001 AGGTTTTGGCTTACAATTGTTTCAT 58.409 32.000 17.78 0.00 39.21 2.57
749 786 6.482973 AGGTTTTGGCTTACAATTGTTTCATG 59.517 34.615 17.78 2.49 39.21 3.07
775 815 9.099454 GTAGTAGCAAAGTCAGCTTACAAATAT 57.901 33.333 0.03 0.00 43.25 1.28
839 880 7.099764 AGATGTTTGTGTGTACAGGAATAGAG 58.900 38.462 0.00 0.00 38.23 2.43
845 886 2.603560 GTGTACAGGAATAGAGTTGCGC 59.396 50.000 0.00 0.00 0.00 6.09
858 899 1.066454 AGTTGCGCAACACCCTAAAAC 59.934 47.619 44.07 22.29 43.47 2.43
859 900 0.386113 TTGCGCAACACCCTAAAACC 59.614 50.000 21.02 0.00 0.00 3.27
860 901 1.287815 GCGCAACACCCTAAAACCC 59.712 57.895 0.30 0.00 0.00 4.11
912 958 4.196971 TCAGAATTCAGACATGCCATCAG 58.803 43.478 8.44 0.00 0.00 2.90
932 981 7.095940 CCATCAGTTGACACATTTTCATTTGTC 60.096 37.037 0.00 0.00 39.61 3.18
949 998 2.221169 TGTCATGAGCAGGTGTTGTTC 58.779 47.619 0.00 0.00 37.52 3.18
953 1002 0.880278 TGAGCAGGTGTTGTTCGAGC 60.880 55.000 0.00 0.00 39.65 5.03
997 1049 0.726256 GAGCTAGCAGCAGTGAAAGC 59.274 55.000 18.83 0.00 45.56 3.51
1173 1227 4.705337 TTGGAAAAACCGGTATGTATGC 57.295 40.909 8.00 0.00 42.61 3.14
1180 1234 3.735237 ACCGGTATGTATGCTCTGAAG 57.265 47.619 4.49 0.00 0.00 3.02
1192 1247 3.987547 TGCTCTGAAGAAGTTGTCTCTG 58.012 45.455 0.00 0.00 34.56 3.35
1208 1263 2.359214 TCTCTGTCAGATGTCGGTATGC 59.641 50.000 2.22 0.00 0.00 3.14
1298 1353 1.747355 CTGCCCTGAAAACTGCATAGG 59.253 52.381 0.00 0.00 32.53 2.57
1358 1413 4.363991 AACAGAGCTTCCTGAACTTCAT 57.636 40.909 9.28 0.00 37.59 2.57
1394 1449 0.803380 GTCGAAGGCAATGGCAATGC 60.803 55.000 19.09 19.09 43.71 3.56
1420 1475 1.531149 CTGATGTCGAAGCCGTTGTTT 59.469 47.619 0.00 0.00 37.05 2.83
1720 10437 9.829507 CAGTAATTTCTCTGTAGAAGATTGGAT 57.170 33.333 0.00 0.00 42.60 3.41
1751 10469 6.069440 AGGGTGTCTGATTCATAATTCCTTGA 60.069 38.462 0.00 0.00 0.00 3.02
1853 10576 8.214721 CCTAAAGGTACCTTTTCTCATCAATC 57.785 38.462 37.89 0.00 42.93 2.67
2201 10950 9.642327 CATGTCTGATCTTCCTAGATGAAATAG 57.358 37.037 0.00 0.00 41.23 1.73
2428 11177 4.443978 ACCTGCTGCCAGATAATGTAAT 57.556 40.909 0.00 0.00 41.77 1.89
2429 11178 5.567037 ACCTGCTGCCAGATAATGTAATA 57.433 39.130 0.00 0.00 41.77 0.98
2430 11179 5.940617 ACCTGCTGCCAGATAATGTAATAA 58.059 37.500 0.00 0.00 41.77 1.40
2561 11315 2.101082 GGGGAGGTCTATTCTCAACGAC 59.899 54.545 0.00 0.00 33.18 4.34
2682 11436 5.606348 ACCCAGTTGCTAATTTGTTTTGA 57.394 34.783 0.00 0.00 0.00 2.69
2719 11478 2.918712 ATTCGTTCAGCTATCAGGGG 57.081 50.000 0.00 0.00 0.00 4.79
2721 11480 1.403814 TCGTTCAGCTATCAGGGGAG 58.596 55.000 0.00 0.00 0.00 4.30
2726 11489 2.333069 TCAGCTATCAGGGGAGAATGG 58.667 52.381 0.00 0.00 0.00 3.16
2749 11543 7.286313 TGGTTTTCATAATGCCCTTTTTCTTT 58.714 30.769 0.00 0.00 0.00 2.52
2750 11544 8.432805 TGGTTTTCATAATGCCCTTTTTCTTTA 58.567 29.630 0.00 0.00 0.00 1.85
2751 11545 9.278978 GGTTTTCATAATGCCCTTTTTCTTTAA 57.721 29.630 0.00 0.00 0.00 1.52
2755 11549 9.874205 TTCATAATGCCCTTTTTCTTTAAGATG 57.126 29.630 0.00 0.00 0.00 2.90
2756 11550 9.253832 TCATAATGCCCTTTTTCTTTAAGATGA 57.746 29.630 0.00 0.00 0.00 2.92
2760 11554 7.537596 TGCCCTTTTTCTTTAAGATGATTCA 57.462 32.000 0.00 0.00 0.00 2.57
2761 11555 7.378181 TGCCCTTTTTCTTTAAGATGATTCAC 58.622 34.615 0.00 0.00 0.00 3.18
2762 11556 7.015098 TGCCCTTTTTCTTTAAGATGATTCACA 59.985 33.333 0.00 0.00 0.00 3.58
2763 11557 8.037166 GCCCTTTTTCTTTAAGATGATTCACAT 58.963 33.333 0.00 0.00 42.47 3.21
2764 11558 9.933723 CCCTTTTTCTTTAAGATGATTCACATT 57.066 29.630 0.00 0.00 39.56 2.71
2771 11565 9.897744 TCTTTAAGATGATTCACATTTGTGTTC 57.102 29.630 10.30 9.23 45.76 3.18
2772 11566 9.903682 CTTTAAGATGATTCACATTTGTGTTCT 57.096 29.630 10.30 4.51 45.76 3.01
2776 11570 8.807667 AGATGATTCACATTTGTGTTCTTTTC 57.192 30.769 10.30 7.85 45.76 2.29
2855 11649 0.687354 ATCTCCAAACTCGTGCTGGT 59.313 50.000 6.21 0.00 0.00 4.00
2948 11745 7.810260 AGGATCAGCCTCTTTATTCAGTTAAT 58.190 34.615 0.00 0.00 46.97 1.40
3154 11954 1.717937 GCATAAGGCGCACTCACAG 59.282 57.895 10.83 0.00 0.00 3.66
3243 12043 4.870021 AGAGGATGAGCCAAAAAGGTAT 57.130 40.909 0.00 0.00 40.61 2.73
3380 12192 7.119699 TGTTCTGAGTCATTTTCATACATGTCC 59.880 37.037 0.00 0.00 0.00 4.02
3424 12236 7.455447 CGGAAGCAAATGAAATCAATAAAACC 58.545 34.615 0.00 0.00 0.00 3.27
3459 12361 6.484643 GCTGGAGATAAAAATGCTGATACAGA 59.515 38.462 2.81 0.00 32.44 3.41
3464 12366 7.646314 AGATAAAAATGCTGATACAGACATGC 58.354 34.615 2.81 0.00 32.09 4.06
3465 12367 3.957671 AAATGCTGATACAGACATGCG 57.042 42.857 2.81 0.00 32.09 4.73
3812 12750 9.145865 GTATTTCTGTTTCTGTTGTTCCAAAAA 57.854 29.630 0.00 0.00 0.00 1.94
3892 12835 1.790755 AACTTGCACGCTGACGATTA 58.209 45.000 0.00 0.00 43.93 1.75
3931 12874 9.871238 GGGGAATTCCTAAAGAAAAATTCTAAC 57.129 33.333 23.63 0.63 38.21 2.34
3964 12907 0.039256 CACACGATGGTTTTGGCCAG 60.039 55.000 5.11 0.00 42.47 4.85
3983 12935 2.679837 CAGGACATTGAGGGTGATTTCG 59.320 50.000 0.00 0.00 0.00 3.46
4020 12972 1.600957 CATTGAGTCGGATGTCATGCC 59.399 52.381 0.00 0.00 0.00 4.40
4040 12992 0.395862 TGGTGCCGGAAAAGAACCAA 60.396 50.000 5.05 0.00 37.96 3.67
4069 13021 1.670811 GATGTTGCCACTTCCGGTATG 59.329 52.381 0.00 0.00 0.00 2.39
4086 13038 1.588239 ATGGATGGGTTGAGCTCTCA 58.412 50.000 16.19 8.51 37.91 3.27
4097 13049 3.089573 TGAGCTCTCATTGTCGCATAG 57.910 47.619 16.19 0.00 34.14 2.23
4121 13073 7.111466 AGTCGATACTTCTGAACCTAGTACTT 58.889 38.462 0.00 0.00 29.00 2.24
4159 13123 2.490903 GCATGAATCAAGGCAACACTCT 59.509 45.455 0.00 0.00 41.41 3.24
4169 13136 5.592282 TCAAGGCAACACTCTAAAACATCAA 59.408 36.000 0.00 0.00 41.41 2.57
4296 13270 4.825085 TGTTTATTGGAACTCAACAGACCC 59.175 41.667 0.00 0.00 38.31 4.46
4299 13273 3.662759 TTGGAACTCAACAGACCCTTT 57.337 42.857 0.00 0.00 0.00 3.11
4408 13399 1.583054 GAGAGGTTTATGCGCCGATT 58.417 50.000 4.18 0.00 0.00 3.34
4705 13700 8.908903 AGTATGAGATAACGACTCTGAATTCTT 58.091 33.333 7.05 0.00 35.66 2.52
4706 13701 9.176181 GTATGAGATAACGACTCTGAATTCTTC 57.824 37.037 7.05 0.00 35.66 2.87
4715 13710 6.127675 ACGACTCTGAATTCTTCCCTACTTAC 60.128 42.308 7.05 0.00 0.00 2.34
4797 13796 7.944729 AATGGATAAGCAGTGTCAACTATTT 57.055 32.000 0.00 0.00 33.79 1.40
4965 13964 3.689161 TCAGGCATCAAAACGTAATCCTG 59.311 43.478 0.00 0.00 40.73 3.86
4995 13994 8.923270 TCATTGTTTCATTTTCTTTCTAACCCT 58.077 29.630 0.00 0.00 0.00 4.34
4996 13995 8.981647 CATTGTTTCATTTTCTTTCTAACCCTG 58.018 33.333 0.00 0.00 0.00 4.45
5007 14006 4.487714 TTCTAACCCTGCCTCATGTTAG 57.512 45.455 0.00 0.00 40.81 2.34
5089 14088 4.832266 AGCATGTGTTTTATCCCTTGTTCA 59.168 37.500 0.00 0.00 0.00 3.18
5113 14112 4.937015 GTTTCCCAACAATCCATCAAATGG 59.063 41.667 0.00 0.00 41.17 3.16
5148 14147 5.233083 TGATCAAGAGGAGCAAGAGAAAA 57.767 39.130 0.00 0.00 39.36 2.29
5316 14315 1.261619 GTTGGAGAACAGTGCAACGAG 59.738 52.381 0.00 0.00 45.86 4.18
5356 14355 0.321021 CTCAGCTTGGAGCAGTGACT 59.679 55.000 2.47 0.00 45.56 3.41
5357 14356 1.547820 CTCAGCTTGGAGCAGTGACTA 59.452 52.381 2.47 0.00 45.56 2.59
5386 14389 3.482436 TGGTTGAATGTCCTTGGTGTAC 58.518 45.455 0.00 0.00 0.00 2.90
5395 14398 3.007506 TGTCCTTGGTGTACTGTACATGG 59.992 47.826 22.21 19.56 41.34 3.66
5476 14479 9.515226 TTTGTTTGTTATATAAGGAACTGCTCT 57.485 29.630 16.11 0.00 40.86 4.09
5538 14549 3.869246 GCTTTGGTAAGCGCAGATAACTA 59.131 43.478 11.47 0.00 46.53 2.24
5542 14553 5.531122 TGGTAAGCGCAGATAACTATTCT 57.469 39.130 11.47 0.00 0.00 2.40
5550 14561 7.265673 AGCGCAGATAACTATTCTGTTCTAAA 58.734 34.615 11.47 0.00 34.27 1.85
5567 14578 5.999205 TCTAAACCCATGCAATTGATGTT 57.001 34.783 10.34 1.45 0.00 2.71
5573 14584 7.999450 AACCCATGCAATTGATGTTATTTTT 57.001 28.000 10.34 0.00 0.00 1.94
5699 14740 6.593382 TGCTTGTTGCTTATTTTCAGTTGTTT 59.407 30.769 0.00 0.00 43.37 2.83
5702 14743 7.897575 TGTTGCTTATTTTCAGTTGTTTTGT 57.102 28.000 0.00 0.00 0.00 2.83
5715 14756 8.438676 TCAGTTGTTTTGTTTTCCTTTTTCAA 57.561 26.923 0.00 0.00 0.00 2.69
5753 14802 9.926751 CTGATGTATCTTAGTTATTTGCAGTTG 57.073 33.333 0.00 0.00 0.00 3.16
5774 14823 7.537306 CAGTTGGAATTTGTAGGTTGTTATTCG 59.463 37.037 0.00 0.00 0.00 3.34
5821 14870 8.977267 AAGAAAATGGAAATGGAAATTGTGAA 57.023 26.923 0.00 0.00 0.00 3.18
5840 14889 7.639113 TGTGAACAGGTTATTTTGAGTTCTT 57.361 32.000 0.00 0.00 37.03 2.52
5945 14994 7.584122 TGTAAATACAGTTTTTAACCTGCCA 57.416 32.000 0.00 0.00 0.00 4.92
5949 14998 6.664428 ATACAGTTTTTAACCTGCCAATGT 57.336 33.333 0.00 0.00 0.00 2.71
5956 15005 2.014010 AACCTGCCAATGTCATGGTT 57.986 45.000 0.00 0.00 42.75 3.67
5988 15037 2.844348 GTCAGGGAGGGGTTTCTTGATA 59.156 50.000 0.00 0.00 0.00 2.15
6013 15062 6.748333 TGATCTTGAACCATCATGAACTTC 57.252 37.500 0.00 1.54 41.44 3.01
6018 15067 4.335416 TGAACCATCATGAACTTCCCTTC 58.665 43.478 0.00 0.00 0.00 3.46
6021 15070 3.588842 ACCATCATGAACTTCCCTTCAGA 59.411 43.478 0.00 0.00 33.65 3.27
6024 15073 4.277515 TCATGAACTTCCCTTCAGAGTG 57.722 45.455 0.00 0.00 33.65 3.51
6031 15080 0.820226 TCCCTTCAGAGTGCATCTCG 59.180 55.000 9.64 6.35 46.86 4.04
6035 15084 2.353109 CCTTCAGAGTGCATCTCGTTGA 60.353 50.000 9.64 7.16 46.86 3.18
6052 15101 3.809832 CGTTGAAGTTCTTGACCATGAGT 59.190 43.478 4.17 0.00 0.00 3.41
6080 15129 4.778213 TCCTCATCCATAGAACCTTTGG 57.222 45.455 0.00 0.00 34.61 3.28
6087 15136 4.867086 TCCATAGAACCTTTGGGGATTTC 58.133 43.478 0.00 0.00 34.20 2.17
6114 15163 3.827008 TGAGATCTTGATAGGTGCACC 57.173 47.619 29.22 29.22 0.00 5.01
6172 15221 5.464168 GTGGATTGACAATGGAGTTCTTTG 58.536 41.667 5.14 0.00 36.80 2.77
6195 15244 3.645212 TCCTTGAGACCCATCTGATGATC 59.355 47.826 18.92 14.72 34.34 2.92
6202 15251 6.961721 TGAGACCCATCTGATGATCCATAATA 59.038 38.462 18.92 0.00 34.34 0.98
6203 15252 7.626487 TGAGACCCATCTGATGATCCATAATAT 59.374 37.037 18.92 0.00 34.34 1.28
6220 15269 8.882282 TCCATAATATTTCCAATAACCTCGGTA 58.118 33.333 0.00 0.00 0.00 4.02
6245 15294 7.175104 AGGTTTGAGATCTTTATAGTTTGGCA 58.825 34.615 0.00 0.00 0.00 4.92
6304 15353 7.815383 TCCATCTAAAGTACATTTCCATCCAT 58.185 34.615 0.00 0.00 32.01 3.41
6307 15356 8.725148 CATCTAAAGTACATTTCCATCCATAGC 58.275 37.037 0.00 0.00 32.01 2.97
6334 15383 0.038166 TTCTTCTTGGCGGCCAATCT 59.962 50.000 32.73 0.00 43.07 2.40
6358 15407 4.097892 ACCAGTCATTTTGTCACTTCCAAC 59.902 41.667 0.00 0.00 0.00 3.77
6371 15420 2.224113 ACTTCCAACTTCGGCGACTTTA 60.224 45.455 10.16 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.109920 AGTGATCGATCGAGGGTGGG 61.110 60.000 23.84 0.00 0.00 4.61
5 6 0.236187 GACGAGTGATCGATCGAGGG 59.764 60.000 23.84 11.89 41.40 4.30
6 7 0.236187 GGACGAGTGATCGATCGAGG 59.764 60.000 23.84 11.56 41.40 4.63
7 8 0.236187 GGGACGAGTGATCGATCGAG 59.764 60.000 23.84 10.92 41.40 4.04
9 10 0.040870 CAGGGACGAGTGATCGATCG 60.041 60.000 20.03 9.36 44.36 3.69
10 11 1.025812 ACAGGGACGAGTGATCGATC 58.974 55.000 18.72 18.72 36.85 3.69
11 12 0.741326 CACAGGGACGAGTGATCGAT 59.259 55.000 0.00 0.00 40.62 3.59
12 13 1.313091 CCACAGGGACGAGTGATCGA 61.313 60.000 4.44 0.00 40.62 3.59
13 14 1.139734 CCACAGGGACGAGTGATCG 59.860 63.158 0.00 0.00 40.62 3.69
14 15 2.579878 TCCACAGGGACGAGTGATC 58.420 57.895 0.00 0.00 40.62 2.92
15 16 4.865629 TCCACAGGGACGAGTGAT 57.134 55.556 0.00 0.00 40.62 3.06
26 27 0.958091 TTTCAACGGGCAATCCACAG 59.042 50.000 0.00 0.00 34.36 3.66
27 28 0.671251 GTTTCAACGGGCAATCCACA 59.329 50.000 0.00 0.00 34.36 4.17
28 29 0.958822 AGTTTCAACGGGCAATCCAC 59.041 50.000 0.00 0.00 34.36 4.02
29 30 1.611491 GAAGTTTCAACGGGCAATCCA 59.389 47.619 0.00 0.00 34.36 3.41
30 31 1.067846 GGAAGTTTCAACGGGCAATCC 60.068 52.381 0.00 0.00 0.00 3.01
31 32 1.401018 CGGAAGTTTCAACGGGCAATC 60.401 52.381 0.00 0.00 0.00 2.67
32 33 0.596082 CGGAAGTTTCAACGGGCAAT 59.404 50.000 0.00 0.00 0.00 3.56
33 34 0.748729 ACGGAAGTTTCAACGGGCAA 60.749 50.000 0.00 0.00 46.40 4.52
34 35 1.153127 ACGGAAGTTTCAACGGGCA 60.153 52.632 0.00 0.00 46.40 5.36
54 55 2.417936 GGAAGTCGGCCGATCTCC 59.582 66.667 33.58 32.06 0.00 3.71
178 182 0.179245 TTCGAATTAACCAACGCGCG 60.179 50.000 30.96 30.96 0.00 6.86
214 232 1.759692 GTAGGTCGGTAGGGTGGGG 60.760 68.421 0.00 0.00 0.00 4.96
217 235 1.017387 GTACGTAGGTCGGTAGGGTG 58.983 60.000 0.00 0.00 44.69 4.61
219 237 1.160329 CCGTACGTAGGTCGGTAGGG 61.160 65.000 15.21 0.00 44.69 3.53
221 239 1.643832 GCCGTACGTAGGTCGGTAG 59.356 63.158 20.22 4.31 45.11 3.18
222 240 2.171079 CGCCGTACGTAGGTCGGTA 61.171 63.158 20.22 0.00 45.11 4.02
223 241 3.499737 CGCCGTACGTAGGTCGGT 61.500 66.667 20.22 0.00 45.11 4.69
255 273 4.781883 GCAACAAAGCGGAATTTCAAACAC 60.782 41.667 0.00 0.00 0.00 3.32
269 287 3.950395 AGAGATGGAATAGGCAACAAAGC 59.050 43.478 0.00 0.00 41.41 3.51
273 291 4.018506 TCCAAAGAGATGGAATAGGCAACA 60.019 41.667 0.00 0.00 46.36 3.33
274 292 4.526970 TCCAAAGAGATGGAATAGGCAAC 58.473 43.478 0.00 0.00 46.36 4.17
300 318 1.784525 GGCGTCTGATAAAGGGATCG 58.215 55.000 0.00 0.00 0.00 3.69
302 320 1.068741 GTCGGCGTCTGATAAAGGGAT 59.931 52.381 6.85 0.00 0.00 3.85
304 322 0.529992 GGTCGGCGTCTGATAAAGGG 60.530 60.000 6.85 0.00 0.00 3.95
305 323 0.460311 AGGTCGGCGTCTGATAAAGG 59.540 55.000 6.85 0.00 0.00 3.11
306 324 3.004419 TCATAGGTCGGCGTCTGATAAAG 59.996 47.826 6.85 0.00 0.00 1.85
307 325 2.953648 TCATAGGTCGGCGTCTGATAAA 59.046 45.455 6.85 0.00 0.00 1.40
308 326 2.292569 GTCATAGGTCGGCGTCTGATAA 59.707 50.000 6.85 0.00 0.00 1.75
309 327 1.878088 GTCATAGGTCGGCGTCTGATA 59.122 52.381 6.85 0.00 0.00 2.15
313 331 1.880675 CATAGTCATAGGTCGGCGTCT 59.119 52.381 6.85 8.76 0.00 4.18
314 332 1.878088 TCATAGTCATAGGTCGGCGTC 59.122 52.381 6.85 0.00 0.00 5.19
315 333 1.880675 CTCATAGTCATAGGTCGGCGT 59.119 52.381 6.85 0.00 0.00 5.68
317 335 1.613925 TGCTCATAGTCATAGGTCGGC 59.386 52.381 0.00 0.00 0.00 5.54
319 337 6.584184 CACTATTTGCTCATAGTCATAGGTCG 59.416 42.308 5.63 0.00 37.81 4.79
320 338 7.881643 CACTATTTGCTCATAGTCATAGGTC 57.118 40.000 5.63 0.00 37.81 3.85
337 355 4.599241 AGTAGGCATATGGAGGCACTATTT 59.401 41.667 4.56 0.00 41.55 1.40
338 356 4.171234 AGTAGGCATATGGAGGCACTATT 58.829 43.478 4.56 0.00 41.55 1.73
339 357 3.796111 AGTAGGCATATGGAGGCACTAT 58.204 45.455 4.56 0.00 41.55 2.12
340 358 3.260269 AGTAGGCATATGGAGGCACTA 57.740 47.619 4.56 0.00 41.55 2.74
342 360 2.938956 AAGTAGGCATATGGAGGCAC 57.061 50.000 4.56 0.00 32.69 5.01
343 361 5.582950 AATTAAGTAGGCATATGGAGGCA 57.417 39.130 4.56 0.00 32.69 4.75
344 362 6.947464 TCTAATTAAGTAGGCATATGGAGGC 58.053 40.000 9.89 0.00 0.00 4.70
345 363 8.140112 ACTCTAATTAAGTAGGCATATGGAGG 57.860 38.462 9.89 0.00 0.00 4.30
347 365 9.998106 GAAACTCTAATTAAGTAGGCATATGGA 57.002 33.333 9.89 0.00 0.00 3.41
348 366 9.220767 GGAAACTCTAATTAAGTAGGCATATGG 57.779 37.037 9.89 0.00 0.00 2.74
351 369 8.989131 ACAGGAAACTCTAATTAAGTAGGCATA 58.011 33.333 9.89 0.00 40.21 3.14
370 388 6.321181 ACAATCTTGTGCTTAGAAACAGGAAA 59.679 34.615 4.89 0.00 40.49 3.13
374 392 5.400485 GCAACAATCTTGTGCTTAGAAACAG 59.600 40.000 0.00 0.00 41.31 3.16
394 412 1.724581 GTTAACCAGCACGCGCAAC 60.725 57.895 5.73 0.00 42.27 4.17
398 416 1.833434 TTTCCGTTAACCAGCACGCG 61.833 55.000 3.53 3.53 34.98 6.01
404 422 9.172820 GTTTACAACTTAATTTCCGTTAACCAG 57.827 33.333 0.00 0.00 0.00 4.00
445 463 9.695155 ACCAGCCAAACTAGTTGTATATTATTT 57.305 29.630 9.34 0.00 35.23 1.40
446 464 9.695155 AACCAGCCAAACTAGTTGTATATTATT 57.305 29.630 9.34 0.00 35.23 1.40
448 466 9.169592 GAAACCAGCCAAACTAGTTGTATATTA 57.830 33.333 9.34 0.00 35.23 0.98
450 468 6.602009 GGAAACCAGCCAAACTAGTTGTATAT 59.398 38.462 9.34 0.00 35.23 0.86
460 478 2.452600 TCTTGGAAACCAGCCAAACT 57.547 45.000 0.00 0.00 44.23 2.66
462 480 1.969923 CCATCTTGGAAACCAGCCAAA 59.030 47.619 0.00 0.00 44.23 3.28
467 485 2.226437 CGACAACCATCTTGGAAACCAG 59.774 50.000 0.00 0.00 40.96 4.00
475 493 4.494484 TCTATGTGTCGACAACCATCTTG 58.506 43.478 21.95 13.26 35.11 3.02
480 498 5.736207 GCATCTATCTATGTGTCGACAACCA 60.736 44.000 21.95 15.69 35.11 3.67
483 501 4.340950 TGGCATCTATCTATGTGTCGACAA 59.659 41.667 21.95 11.23 35.11 3.18
484 502 3.888930 TGGCATCTATCTATGTGTCGACA 59.111 43.478 15.76 15.76 36.22 4.35
496 514 9.722184 ACATGAGCATATATATTGGCATCTATC 57.278 33.333 0.00 0.00 0.00 2.08
500 518 7.498239 ACTCACATGAGCATATATATTGGCATC 59.502 37.037 8.84 3.93 45.79 3.91
504 522 9.828039 ATGTACTCACATGAGCATATATATTGG 57.172 33.333 8.84 0.00 43.89 3.16
512 530 9.247861 ACATATAGATGTACTCACATGAGCATA 57.752 33.333 8.84 0.00 45.58 3.14
513 531 8.131847 ACATATAGATGTACTCACATGAGCAT 57.868 34.615 8.84 5.40 45.58 3.79
514 532 7.530426 ACATATAGATGTACTCACATGAGCA 57.470 36.000 8.84 0.56 45.58 4.26
515 533 7.543868 GGAACATATAGATGTACTCACATGAGC 59.456 40.741 2.88 0.00 45.93 4.26
516 534 8.579863 TGGAACATATAGATGTACTCACATGAG 58.420 37.037 2.88 7.36 45.93 2.90
517 535 8.477419 TGGAACATATAGATGTACTCACATGA 57.523 34.615 2.88 0.00 45.93 3.07
518 536 7.816513 CCTGGAACATATAGATGTACTCACATG 59.183 40.741 2.88 0.00 45.93 3.21
519 537 7.038729 CCCTGGAACATATAGATGTACTCACAT 60.039 40.741 2.88 0.00 45.93 3.21
521 539 6.493802 TCCCTGGAACATATAGATGTACTCAC 59.506 42.308 2.88 0.00 45.93 3.51
522 540 6.620429 TCCCTGGAACATATAGATGTACTCA 58.380 40.000 2.88 2.37 45.93 3.41
523 541 7.147811 GGATCCCTGGAACATATAGATGTACTC 60.148 44.444 2.88 0.00 45.93 2.59
529 549 6.094302 ACAAGGATCCCTGGAACATATAGAT 58.906 40.000 14.94 0.00 38.20 1.98
564 584 7.240414 TCATTAATAATCGACACGCAAATCA 57.760 32.000 0.00 0.00 0.00 2.57
599 619 6.573664 TTTACAAGTGCTAAGATGTGCAAT 57.426 33.333 0.00 0.00 41.10 3.56
602 622 6.381801 ACAATTTACAAGTGCTAAGATGTGC 58.618 36.000 0.00 0.00 0.00 4.57
637 657 1.829261 CGGCTTAGGGGATCCTCAGAT 60.829 57.143 15.83 0.00 43.66 2.90
640 660 2.140792 GCGGCTTAGGGGATCCTCA 61.141 63.158 15.83 0.00 43.66 3.86
659 679 9.390795 GTTAGAATACTCACGATCGCTAATTAA 57.609 33.333 16.60 0.50 0.00 1.40
660 680 8.781196 AGTTAGAATACTCACGATCGCTAATTA 58.219 33.333 16.60 0.63 0.00 1.40
661 681 7.649973 AGTTAGAATACTCACGATCGCTAATT 58.350 34.615 16.60 8.15 0.00 1.40
662 682 7.204496 AGTTAGAATACTCACGATCGCTAAT 57.796 36.000 16.60 1.06 0.00 1.73
663 683 6.615264 AGTTAGAATACTCACGATCGCTAA 57.385 37.500 16.60 9.06 0.00 3.09
678 698 1.206371 CCGGGACCGTTGAGTTAGAAT 59.794 52.381 10.17 0.00 37.81 2.40
685 705 3.622060 AATGCCCGGGACCGTTGAG 62.622 63.158 29.31 0.00 37.81 3.02
688 708 2.886730 GATCAATGCCCGGGACCGTT 62.887 60.000 29.31 12.71 37.81 4.44
692 712 0.535102 AATCGATCAATGCCCGGGAC 60.535 55.000 29.31 16.95 0.00 4.46
695 715 1.806542 CCTAAATCGATCAATGCCCGG 59.193 52.381 0.00 0.00 0.00 5.73
696 716 1.806542 CCCTAAATCGATCAATGCCCG 59.193 52.381 0.00 0.00 0.00 6.13
704 724 3.243907 CCTCAGTGTCCCCTAAATCGATC 60.244 52.174 0.00 0.00 0.00 3.69
705 725 2.700897 CCTCAGTGTCCCCTAAATCGAT 59.299 50.000 0.00 0.00 0.00 3.59
706 726 2.108168 CCTCAGTGTCCCCTAAATCGA 58.892 52.381 0.00 0.00 0.00 3.59
707 727 1.831736 ACCTCAGTGTCCCCTAAATCG 59.168 52.381 0.00 0.00 0.00 3.34
715 735 0.178990 AGCCAAAACCTCAGTGTCCC 60.179 55.000 0.00 0.00 0.00 4.46
718 738 3.290948 TGTAAGCCAAAACCTCAGTGT 57.709 42.857 0.00 0.00 0.00 3.55
719 739 4.853924 ATTGTAAGCCAAAACCTCAGTG 57.146 40.909 0.00 0.00 36.44 3.66
721 741 5.200368 ACAATTGTAAGCCAAAACCTCAG 57.800 39.130 9.97 0.00 36.44 3.35
723 743 6.045955 TGAAACAATTGTAAGCCAAAACCTC 58.954 36.000 12.39 0.00 36.44 3.85
739 776 7.573843 GCTGACTTTGCTACTACATGAAACAAT 60.574 37.037 0.00 0.00 0.00 2.71
744 781 5.152623 AGCTGACTTTGCTACTACATGAA 57.847 39.130 0.00 0.00 39.21 2.57
748 785 5.462530 TGTAAGCTGACTTTGCTACTACA 57.537 39.130 2.06 0.00 40.22 2.74
749 786 6.780706 TTTGTAAGCTGACTTTGCTACTAC 57.219 37.500 2.06 0.00 40.22 2.73
775 815 7.224297 AGACAGCACATAGAAAAAGGAAGTTA 58.776 34.615 0.00 0.00 0.00 2.24
839 880 1.483316 GTTTTAGGGTGTTGCGCAAC 58.517 50.000 39.38 39.38 41.50 4.17
845 886 2.648593 CCCGGGTTTTAGGGTGTTG 58.351 57.895 14.18 0.00 42.67 3.33
858 899 7.040686 CCAAAATCTATTACTGTATTTCCCGGG 60.041 40.741 16.85 16.85 0.00 5.73
859 900 7.501225 ACCAAAATCTATTACTGTATTTCCCGG 59.499 37.037 0.00 0.00 0.00 5.73
860 901 8.446599 ACCAAAATCTATTACTGTATTTCCCG 57.553 34.615 0.00 0.00 0.00 5.14
932 981 1.462283 CTCGAACAACACCTGCTCATG 59.538 52.381 0.00 0.00 0.00 3.07
949 998 3.374988 TCAGTCCTGCAAATTAATGCTCG 59.625 43.478 3.90 0.00 46.54 5.03
953 1002 5.490139 ACGATCAGTCCTGCAAATTAATG 57.510 39.130 0.00 0.00 0.00 1.90
997 1049 1.368641 TCATCGGAAGACGCCATTTG 58.631 50.000 0.00 0.00 46.97 2.32
1058 1112 1.736032 GCACAGTCTCCACCGTGTATC 60.736 57.143 0.00 0.00 0.00 2.24
1064 1118 1.915614 GCATTGCACAGTCTCCACCG 61.916 60.000 3.15 0.00 0.00 4.94
1066 1120 1.068748 CAAGCATTGCACAGTCTCCAC 60.069 52.381 11.91 0.00 40.39 4.02
1173 1227 5.009510 TCTGACAGAGACAACTTCTTCAGAG 59.990 44.000 0.00 0.00 33.22 3.35
1180 1234 3.917380 CGACATCTGACAGAGACAACTTC 59.083 47.826 11.52 0.00 31.75 3.01
1192 1247 2.866762 GGAAAGCATACCGACATCTGAC 59.133 50.000 0.00 0.00 0.00 3.51
1208 1263 5.578005 ATGAATGTGATCAGCAAGGAAAG 57.422 39.130 0.00 0.00 31.76 2.62
1298 1353 1.062148 GAAATAGCTTCAACGCCGTCC 59.938 52.381 0.00 0.00 33.86 4.79
1394 1449 1.303309 GGCTTCGACATCAGGATTGG 58.697 55.000 0.00 0.00 0.00 3.16
1396 1451 0.537188 ACGGCTTCGACATCAGGATT 59.463 50.000 0.00 0.00 37.63 3.01
1399 1454 0.670546 ACAACGGCTTCGACATCAGG 60.671 55.000 0.00 0.00 37.63 3.86
1420 1475 4.141135 TGGTTTCTGTATCAAGGGGTTGAA 60.141 41.667 0.00 0.00 34.24 2.69
1606 10317 4.047166 TCATGGTCCTGTCCCTGAAATAT 58.953 43.478 0.00 0.00 31.21 1.28
1720 10437 3.184382 TGAATCAGACACCCTGGTCTA 57.816 47.619 0.00 0.00 46.05 2.59
1852 10575 8.623903 GTTCATAATAAACTGAATGATGCCAGA 58.376 33.333 0.00 0.00 34.18 3.86
1853 10576 8.627403 AGTTCATAATAAACTGAATGATGCCAG 58.373 33.333 0.00 0.00 35.68 4.85
2201 10950 3.671928 CAGAACTGCAGTTTGCTAATTGC 59.328 43.478 31.58 18.71 45.31 3.56
2428 11177 7.177744 GGAAACTCATGGGTTTGTAGGAATTTA 59.822 37.037 28.03 0.00 39.20 1.40
2429 11178 6.014584 GGAAACTCATGGGTTTGTAGGAATTT 60.015 38.462 28.03 0.00 39.20 1.82
2430 11179 5.480422 GGAAACTCATGGGTTTGTAGGAATT 59.520 40.000 28.03 0.22 39.20 2.17
2561 11315 5.278463 CCCAGATACAGAACAAACCAAAGTG 60.278 44.000 0.00 0.00 0.00 3.16
2621 11375 6.089920 TCGCAGTATAAAATGTTTGTCTCG 57.910 37.500 0.00 0.00 0.00 4.04
2636 11390 5.907207 ACATACATGTCTTCTTCGCAGTAT 58.093 37.500 0.00 0.00 35.87 2.12
2682 11436 9.653287 TGAACGAATATAACAAAGACTGAAGAT 57.347 29.630 0.00 0.00 0.00 2.40
2719 11478 5.859205 AGGGCATTATGAAAACCATTCTC 57.141 39.130 0.00 0.00 36.71 2.87
2721 11480 7.607607 AGAAAAAGGGCATTATGAAAACCATTC 59.392 33.333 0.00 0.29 36.71 2.67
2771 11565 5.818136 TGTCACTCTCAAACCTTGAAAAG 57.182 39.130 0.00 0.00 45.69 2.27
2772 11566 5.450412 GCATGTCACTCTCAAACCTTGAAAA 60.450 40.000 0.00 0.00 39.58 2.29
2773 11567 4.036734 GCATGTCACTCTCAAACCTTGAAA 59.963 41.667 0.00 0.00 39.58 2.69
2774 11568 3.565482 GCATGTCACTCTCAAACCTTGAA 59.435 43.478 0.00 0.00 39.58 2.69
2775 11569 3.141398 GCATGTCACTCTCAAACCTTGA 58.859 45.455 0.00 0.00 38.17 3.02
2776 11570 3.144506 AGCATGTCACTCTCAAACCTTG 58.855 45.455 0.00 0.00 0.00 3.61
2855 11649 3.444916 CTCGCTTATCTTCAAACGGCTA 58.555 45.455 0.00 0.00 0.00 3.93
2979 11779 0.741221 CCTCCGGTGTAGAGCTTTGC 60.741 60.000 0.00 0.00 0.00 3.68
3154 11954 9.516314 GATCTGTAGTAATTTTTGGCAATAACC 57.484 33.333 0.00 0.00 0.00 2.85
3243 12043 3.958147 GGGACAGGGAGAAAGTTGAAAAA 59.042 43.478 0.00 0.00 0.00 1.94
3291 12095 0.833287 GCAGGATCTAGGTCCAGCAA 59.167 55.000 29.16 0.00 46.57 3.91
3351 12157 9.681692 CATGTATGAAAATGACTCAGAACAAAA 57.318 29.630 0.00 0.00 30.74 2.44
3352 12158 8.849168 ACATGTATGAAAATGACTCAGAACAAA 58.151 29.630 0.00 0.00 30.74 2.83
3353 12159 8.394971 ACATGTATGAAAATGACTCAGAACAA 57.605 30.769 0.00 0.00 30.74 2.83
3423 12235 5.756195 TTTATCTCCAGCATTCGAATTGG 57.244 39.130 18.91 18.91 0.00 3.16
3424 12236 7.306399 GCATTTTTATCTCCAGCATTCGAATTG 60.306 37.037 8.21 5.35 0.00 2.32
3433 12335 6.121590 TGTATCAGCATTTTTATCTCCAGCA 58.878 36.000 0.00 0.00 0.00 4.41
3459 12361 0.182061 ATCTCCAGCATTCCGCATGT 59.818 50.000 0.00 0.00 46.13 3.21
3464 12366 4.940046 AGCATATTTATCTCCAGCATTCCG 59.060 41.667 0.00 0.00 0.00 4.30
3465 12367 5.942236 TCAGCATATTTATCTCCAGCATTCC 59.058 40.000 0.00 0.00 0.00 3.01
3682 12620 2.176546 CTGGTGCGGCAATGTTCG 59.823 61.111 3.23 0.00 0.00 3.95
3812 12750 8.137745 TCTGGCTATTCCAAATTTGAGATTTT 57.862 30.769 19.86 6.25 46.01 1.82
3813 12751 7.722949 TCTGGCTATTCCAAATTTGAGATTT 57.277 32.000 19.86 8.27 46.01 2.17
3832 12773 6.975197 GGATACTAAGCAAATTCTTTTCTGGC 59.025 38.462 0.00 0.00 0.00 4.85
3833 12774 8.055279 TGGATACTAAGCAAATTCTTTTCTGG 57.945 34.615 0.00 0.00 37.61 3.86
3836 12777 8.056407 ACCTGGATACTAAGCAAATTCTTTTC 57.944 34.615 0.00 0.00 37.61 2.29
3837 12778 7.148239 CGACCTGGATACTAAGCAAATTCTTTT 60.148 37.037 0.00 0.00 37.61 2.27
3892 12835 4.730904 AGGAATTCCCCTCTCTGAAATGAT 59.269 41.667 21.22 0.00 36.42 2.45
3931 12874 1.056103 CGTGTGAAGAGCTCAAGTCG 58.944 55.000 17.77 8.84 35.22 4.18
3964 12907 2.420022 CACGAAATCACCCTCAATGTCC 59.580 50.000 0.00 0.00 0.00 4.02
3983 12935 1.463674 ATGATTTCTGGTTCGGGCAC 58.536 50.000 0.00 0.00 0.00 5.01
4020 12972 0.821711 TGGTTCTTTTCCGGCACCAG 60.822 55.000 0.00 0.00 32.38 4.00
4069 13021 2.295885 CAATGAGAGCTCAACCCATCC 58.704 52.381 17.77 0.00 43.58 3.51
4086 13038 5.008712 TCAGAAGTATCGACTATGCGACAAT 59.991 40.000 0.00 0.00 43.79 2.71
4097 13049 6.923928 AGTACTAGGTTCAGAAGTATCGAC 57.076 41.667 0.00 0.00 0.00 4.20
4121 13073 2.064434 TGCTTGTTTCCATGGTCACA 57.936 45.000 12.58 12.81 0.00 3.58
4159 13123 5.297278 ACCACGCAGTTTAGTTGATGTTTTA 59.703 36.000 0.00 0.00 41.61 1.52
4169 13136 2.319136 TTCACACCACGCAGTTTAGT 57.681 45.000 0.00 0.00 41.61 2.24
4265 13239 9.179909 TGTTGAGTTCCAATAAACAACTTCTAA 57.820 29.630 0.00 0.00 38.51 2.10
4266 13240 8.740123 TGTTGAGTTCCAATAAACAACTTCTA 57.260 30.769 0.00 0.00 38.51 2.10
4278 13252 3.884037 AAGGGTCTGTTGAGTTCCAAT 57.116 42.857 0.00 0.00 37.08 3.16
4374 13365 2.628657 ACCTCTCGCAGTTTGTAGTCTT 59.371 45.455 0.00 0.00 0.00 3.01
4408 13399 9.457436 TGGACGTTACTCTGCATATAATAGATA 57.543 33.333 0.00 0.00 0.00 1.98
4705 13700 5.370289 TCCACAAAAGAAAGGTAAGTAGGGA 59.630 40.000 0.00 0.00 0.00 4.20
4706 13701 5.627135 TCCACAAAAGAAAGGTAAGTAGGG 58.373 41.667 0.00 0.00 0.00 3.53
4715 13710 9.143631 GATTTACAATGATCCACAAAAGAAAGG 57.856 33.333 0.00 0.00 0.00 3.11
4770 13768 4.702131 AGTTGACACTGCTTATCCATTTCC 59.298 41.667 0.00 0.00 0.00 3.13
4797 13796 2.420547 GCATGCCCAAGTATCTGAGACA 60.421 50.000 6.36 0.00 0.00 3.41
4929 13928 2.041153 CCTGAACACAGGTTTGGGC 58.959 57.895 7.96 0.00 44.25 5.36
4947 13946 4.678509 TCACAGGATTACGTTTTGATGC 57.321 40.909 0.00 0.00 0.00 3.91
4995 13994 5.059161 GCATCTAACATCTAACATGAGGCA 58.941 41.667 0.00 0.00 31.42 4.75
4996 13995 5.178996 CAGCATCTAACATCTAACATGAGGC 59.821 44.000 0.00 0.00 0.00 4.70
5066 14065 4.832266 TGAACAAGGGATAAAACACATGCT 59.168 37.500 0.00 0.00 0.00 3.79
5080 14079 2.383855 TGTTGGGAAACTGAACAAGGG 58.616 47.619 0.00 0.00 32.24 3.95
5089 14088 5.797051 CATTTGATGGATTGTTGGGAAACT 58.203 37.500 0.00 0.00 0.00 2.66
5113 14112 6.982852 TCCTCTTGATCATACTTCGGTAATC 58.017 40.000 0.00 0.00 33.79 1.75
5148 14147 0.179067 TTTTCGGTGTCGGCAAGAGT 60.179 50.000 0.00 0.00 36.95 3.24
5159 14158 1.724581 GCGCGGAAGTTTTTCGGTG 60.725 57.895 8.83 4.63 43.20 4.94
5316 14315 1.349357 AGGAACTCCAAGCTGAGGAAC 59.651 52.381 9.26 4.66 38.89 3.62
5356 14355 6.015519 CCAAGGACATTCAACCATGAGTTTTA 60.016 38.462 0.00 0.00 36.18 1.52
5357 14356 5.221501 CCAAGGACATTCAACCATGAGTTTT 60.222 40.000 0.00 0.00 36.18 2.43
5386 14389 8.082242 TCGAATAATCACATCTACCATGTACAG 58.918 37.037 0.33 0.00 0.00 2.74
5463 14466 4.968719 TCATGGGATTAGAGCAGTTCCTTA 59.031 41.667 0.00 0.00 0.00 2.69
5464 14467 3.782523 TCATGGGATTAGAGCAGTTCCTT 59.217 43.478 0.00 0.00 0.00 3.36
5472 14475 9.561069 TTCTAACTAAATTCATGGGATTAGAGC 57.439 33.333 14.90 0.00 31.15 4.09
5528 14539 7.769044 TGGGTTTAGAACAGAATAGTTATCTGC 59.231 37.037 3.57 0.00 46.56 4.26
5538 14549 6.211184 TCAATTGCATGGGTTTAGAACAGAAT 59.789 34.615 0.00 0.00 0.00 2.40
5542 14553 5.245751 ACATCAATTGCATGGGTTTAGAACA 59.754 36.000 16.89 0.00 0.00 3.18
5550 14561 6.127952 GCAAAAATAACATCAATTGCATGGGT 60.128 34.615 16.89 10.04 41.93 4.51
5607 14647 1.690633 CTAGGCCCAGGAGGAAGCA 60.691 63.158 0.00 0.00 38.24 3.91
5630 14670 3.621682 AAGGAGGGTAGGAGGTATGAG 57.378 52.381 0.00 0.00 0.00 2.90
5631 14671 4.363546 AAAAGGAGGGTAGGAGGTATGA 57.636 45.455 0.00 0.00 0.00 2.15
5632 14672 8.322091 CAATATAAAAGGAGGGTAGGAGGTATG 58.678 40.741 0.00 0.00 0.00 2.39
5749 14798 7.229907 ACGAATAACAACCTACAAATTCCAACT 59.770 33.333 0.00 0.00 0.00 3.16
5753 14802 8.806177 AAAACGAATAACAACCTACAAATTCC 57.194 30.769 0.00 0.00 0.00 3.01
5810 14859 7.926018 ACTCAAAATAACCTGTTCACAATTTCC 59.074 33.333 0.00 0.00 0.00 3.13
5821 14870 6.715347 AAGCAAGAACTCAAAATAACCTGT 57.285 33.333 0.00 0.00 0.00 4.00
5840 14889 5.716228 ACATTTTCCATGGTGAGAATAAGCA 59.284 36.000 12.58 0.00 0.00 3.91
5877 14926 7.849804 TCTAATAACTTGGTGATCTCTTTGC 57.150 36.000 0.00 0.00 0.00 3.68
5943 14992 0.533491 CCCAGCAACCATGACATTGG 59.467 55.000 0.00 0.00 42.82 3.16
5945 14994 2.897271 TACCCAGCAACCATGACATT 57.103 45.000 0.00 0.00 0.00 2.71
5949 14998 3.111484 TGACTATACCCAGCAACCATGA 58.889 45.455 0.00 0.00 0.00 3.07
5956 15005 1.413082 CCTCCCTGACTATACCCAGCA 60.413 57.143 0.00 0.00 0.00 4.41
5988 15037 7.147949 GGAAGTTCATGATGGTTCAAGATCAAT 60.148 37.037 5.01 0.00 34.96 2.57
6013 15062 0.534412 ACGAGATGCACTCTGAAGGG 59.466 55.000 12.45 1.82 42.92 3.95
6018 15067 2.681706 ACTTCAACGAGATGCACTCTG 58.318 47.619 12.45 9.27 42.92 3.35
6021 15070 3.393089 AGAACTTCAACGAGATGCACT 57.607 42.857 0.00 0.00 0.00 4.40
6024 15073 3.120511 GGTCAAGAACTTCAACGAGATGC 60.121 47.826 0.00 0.00 0.00 3.91
6031 15080 4.214332 GGACTCATGGTCAAGAACTTCAAC 59.786 45.833 13.95 0.00 46.16 3.18
6035 15084 4.141390 ACTTGGACTCATGGTCAAGAACTT 60.141 41.667 20.07 0.00 46.16 2.66
6052 15101 4.164221 GGTTCTATGGATGAGGAACTTGGA 59.836 45.833 0.00 0.00 41.55 3.53
6080 15129 7.636150 TCAAGATCTCAAATGAAGAAATCCC 57.364 36.000 0.00 0.00 0.00 3.85
6087 15136 6.541278 TGCACCTATCAAGATCTCAAATGAAG 59.459 38.462 0.00 0.00 0.00 3.02
6172 15221 2.768527 TCATCAGATGGGTCTCAAGGAC 59.231 50.000 10.67 0.00 43.79 3.85
6195 15244 7.996098 ACCGAGGTTATTGGAAATATTATGG 57.004 36.000 0.00 0.00 36.15 2.74
6220 15269 7.175104 TGCCAAACTATAAAGATCTCAAACCT 58.825 34.615 0.00 0.00 0.00 3.50
6223 15272 8.806429 TGATGCCAAACTATAAAGATCTCAAA 57.194 30.769 0.00 0.00 0.00 2.69
6245 15294 6.899393 TGTTTGCACTCTTTTCCTAATGAT 57.101 33.333 0.00 0.00 0.00 2.45
6304 15353 4.335315 CCGCCAAGAAGAATTTACATGCTA 59.665 41.667 0.00 0.00 0.00 3.49
6307 15356 3.438360 GCCGCCAAGAAGAATTTACATG 58.562 45.455 0.00 0.00 0.00 3.21
6334 15383 5.042463 TGGAAGTGACAAAATGACTGGTA 57.958 39.130 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.