Multiple sequence alignment - TraesCS1B01G463900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G463900 chr1B 100.000 5834 0 0 1 5834 675746847 675741014 0.000000e+00 10774.0
1 TraesCS1B01G463900 chr1B 82.695 1254 158 24 790 1997 675767743 675766503 0.000000e+00 1059.0
2 TraesCS1B01G463900 chr1B 77.634 1234 197 42 3227 4398 675765016 675763800 0.000000e+00 676.0
3 TraesCS1B01G463900 chr1B 76.124 1290 247 42 1994 3255 675766316 675765060 2.310000e-173 619.0
4 TraesCS1B01G463900 chr1B 88.704 301 26 7 34 328 675746185 675745887 1.550000e-95 361.0
5 TraesCS1B01G463900 chr1B 88.704 301 26 7 663 961 675746814 675746520 1.550000e-95 361.0
6 TraesCS1B01G463900 chr1B 81.416 226 31 8 4594 4811 675763413 675763191 2.160000e-39 174.0
7 TraesCS1B01G463900 chr1D 92.777 3669 145 32 1993 5578 485439166 485435535 0.000000e+00 5197.0
8 TraesCS1B01G463900 chr1D 92.020 2030 109 17 1 1997 485441355 485439346 0.000000e+00 2802.0
9 TraesCS1B01G463900 chr1D 80.972 1440 181 42 612 1997 485480310 485478910 0.000000e+00 1055.0
10 TraesCS1B01G463900 chr1D 77.214 1242 195 43 3227 4398 485477430 485476207 0.000000e+00 645.0
11 TraesCS1B01G463900 chr1D 89.752 322 26 6 11 328 485440718 485440400 7.040000e-109 405.0
12 TraesCS1B01G463900 chr1D 87.425 334 32 8 631 963 485441353 485441029 5.520000e-100 375.0
13 TraesCS1B01G463900 chr1D 81.211 479 73 14 1994 2467 485478722 485478256 2.570000e-98 370.0
14 TraesCS1B01G463900 chr1D 81.364 220 31 7 4599 4811 485475815 485475599 2.800000e-38 171.0
15 TraesCS1B01G463900 chr1A 92.160 2296 86 27 3197 5415 582649866 582647588 0.000000e+00 3157.0
16 TraesCS1B01G463900 chr1A 92.038 2022 93 19 6 1997 582653297 582651314 0.000000e+00 2780.0
17 TraesCS1B01G463900 chr1A 94.263 1255 49 9 1993 3246 582651139 582649907 0.000000e+00 1897.0
18 TraesCS1B01G463900 chr1A 81.630 1399 176 37 653 1997 582661316 582659945 0.000000e+00 1085.0
19 TraesCS1B01G463900 chr1A 88.272 324 30 6 640 961 582653292 582652975 1.190000e-101 381.0
20 TraesCS1B01G463900 chr1A 81.002 479 74 14 1994 2467 582659757 582659291 1.190000e-96 364.0
21 TraesCS1B01G463900 chr1A 85.303 347 30 11 11 356 582652668 582652342 7.240000e-89 339.0
22 TraesCS1B01G463900 chr1A 82.547 212 28 6 4606 4811 582656844 582656636 1.670000e-40 178.0
23 TraesCS1B01G463900 chr3A 79.517 869 130 28 1119 1957 714080265 714079415 5.070000e-160 575.0
24 TraesCS1B01G463900 chr3A 80.497 764 93 23 790 1508 38508089 38507337 8.610000e-148 534.0
25 TraesCS1B01G463900 chr3A 81.055 512 77 11 1454 1957 707760784 707761283 1.970000e-104 390.0
26 TraesCS1B01G463900 chr3A 80.664 512 79 11 1454 1957 707792623 707793122 4.270000e-101 379.0
27 TraesCS1B01G463900 chr3A 80.469 512 80 11 1454 1957 707731768 707732267 1.990000e-99 374.0
28 TraesCS1B01G463900 chr7A 79.338 876 104 32 679 1508 643528312 643527468 1.430000e-150 544.0
29 TraesCS1B01G463900 chr5A 79.078 889 112 29 666 1508 565026975 565027835 1.430000e-150 544.0
30 TraesCS1B01G463900 chr7D 77.929 879 149 29 1106 1957 569149748 569148888 1.880000e-139 507.0
31 TraesCS1B01G463900 chrUn 81.055 512 77 11 1454 1957 303637685 303637186 1.970000e-104 390.0
32 TraesCS1B01G463900 chrUn 80.469 512 80 11 1454 1957 385508876 385509375 1.990000e-99 374.0
33 TraesCS1B01G463900 chr2A 84.685 111 16 1 5442 5552 539397617 539397508 6.180000e-20 110.0
34 TraesCS1B01G463900 chr7B 78.014 141 25 6 5440 5578 55058321 55058185 3.750000e-12 84.2
35 TraesCS1B01G463900 chr6D 91.111 45 3 1 4853 4897 25534275 25534318 6.310000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G463900 chr1B 675741014 675746847 5833 True 3832.000 10774 92.469333 1 5834 3 chr1B.!!$R1 5833
1 TraesCS1B01G463900 chr1B 675763191 675767743 4552 True 632.000 1059 79.467250 790 4811 4 chr1B.!!$R2 4021
2 TraesCS1B01G463900 chr1D 485435535 485441355 5820 True 2194.750 5197 90.493500 1 5578 4 chr1D.!!$R1 5577
3 TraesCS1B01G463900 chr1D 485475599 485480310 4711 True 560.250 1055 80.190250 612 4811 4 chr1D.!!$R2 4199
4 TraesCS1B01G463900 chr1A 582647588 582661316 13728 True 1272.625 3157 87.151875 6 5415 8 chr1A.!!$R1 5409
5 TraesCS1B01G463900 chr3A 714079415 714080265 850 True 575.000 575 79.517000 1119 1957 1 chr3A.!!$R2 838
6 TraesCS1B01G463900 chr3A 38507337 38508089 752 True 534.000 534 80.497000 790 1508 1 chr3A.!!$R1 718
7 TraesCS1B01G463900 chr7A 643527468 643528312 844 True 544.000 544 79.338000 679 1508 1 chr7A.!!$R1 829
8 TraesCS1B01G463900 chr5A 565026975 565027835 860 False 544.000 544 79.078000 666 1508 1 chr5A.!!$F1 842
9 TraesCS1B01G463900 chr7D 569148888 569149748 860 True 507.000 507 77.929000 1106 1957 1 chr7D.!!$R1 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 336 0.375454 TTCAGGTGTTGTCGTTTGCG 59.625 50.0 0.00 0.0 39.92 4.85 F
1387 1442 0.392706 AGGCAATGGCGATGTCGATA 59.607 50.0 6.60 0.0 43.02 2.92 F
1765 1857 0.657840 GATGCATGCGTAACTGTCCC 59.342 55.0 13.55 0.0 0.00 4.46 F
2536 11465 1.075542 CCGATGCTTTTCGTAGTGCA 58.924 50.0 0.00 0.0 37.42 4.57 F
3325 12508 1.160137 GCAGATGGTGACTTGGACAC 58.840 55.0 0.00 0.0 37.51 3.67 F
4627 14099 0.317799 CATGATCGAGAGGAGCAGGG 59.682 60.0 0.00 0.0 45.58 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 10933 0.833287 AGTTACCGATCCTGCTGCAT 59.167 50.0 1.31 0.0 0.00 3.96 R
2371 11299 0.178301 GGTTAGGGCTTTCCTCCTCG 59.822 60.0 0.00 0.0 44.06 4.63 R
3578 12771 0.840617 TGACAGGGTGCAGGTTACAA 59.159 50.0 0.00 0.0 0.00 2.41 R
3579 12772 0.840617 TTGACAGGGTGCAGGTTACA 59.159 50.0 0.00 0.0 0.00 2.41 R
4653 14125 0.804989 CTCTCAAAATGGCGTGGGAC 59.195 55.0 0.00 0.0 0.00 4.46 R
5532 15064 0.106149 AGTGGTTGTTCGGTGGTCTC 59.894 55.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.755542 CTTGCGGTGACTGCGAGTCT 62.756 60.000 22.68 0.00 45.27 3.24
42 43 2.351447 CGGTGACTGCGAGTCTTCTAAA 60.351 50.000 14.60 0.00 45.27 1.85
55 56 3.724751 GTCTTCTAAATCGACGATCGTGG 59.275 47.826 28.12 25.01 41.35 4.94
73 74 3.192422 CGTGGGCATTGATTAGTGGAAAA 59.808 43.478 0.00 0.00 0.00 2.29
85 86 3.751479 AGTGGAAAATGAGGTTTTGGC 57.249 42.857 0.00 0.00 40.04 4.52
93 94 0.669318 TGAGGTTTTGGCTAGTCGCG 60.669 55.000 0.00 0.00 40.44 5.87
132 133 9.309516 GTGTCGGATAATATCAAAGTCAACTTA 57.690 33.333 2.41 0.00 34.61 2.24
183 184 5.483685 TTTTATGTACTGTCTCTGCCACT 57.516 39.130 0.00 0.00 0.00 4.00
187 188 2.557056 TGTACTGTCTCTGCCACTACAC 59.443 50.000 0.00 0.00 0.00 2.90
199 200 2.412870 CCACTACACGAGATGTTTGCA 58.587 47.619 0.00 0.00 43.19 4.08
200 201 2.413112 CCACTACACGAGATGTTTGCAG 59.587 50.000 0.00 0.00 43.19 4.41
202 203 3.494626 CACTACACGAGATGTTTGCAGTT 59.505 43.478 0.00 0.00 43.19 3.16
232 233 9.006215 GGAATATAATTGCGAAACACACTAAAC 57.994 33.333 0.00 0.00 0.00 2.01
233 234 9.549509 GAATATAATTGCGAAACACACTAAACA 57.450 29.630 0.00 0.00 0.00 2.83
240 241 3.628487 CGAAACACACTAAACAAAGGGGA 59.372 43.478 0.00 0.00 0.00 4.81
243 244 4.994907 ACACACTAAACAAAGGGGAAAC 57.005 40.909 0.00 0.00 0.00 2.78
256 257 2.702261 GGGGAAACGCGGCAATATATA 58.298 47.619 12.47 0.00 0.00 0.86
280 281 7.913674 AGATTTTGGTAGTCTCAGAATTGAC 57.086 36.000 0.00 0.00 0.00 3.18
286 287 4.331168 GGTAGTCTCAGAATTGACACATGC 59.669 45.833 0.00 0.00 35.81 4.06
315 316 2.353269 TGACGCATTTTCGTTTGTGACT 59.647 40.909 0.00 0.00 43.42 3.41
317 318 3.765026 ACGCATTTTCGTTTGTGACTTT 58.235 36.364 0.00 0.00 40.07 2.66
328 329 4.412207 GTTTGTGACTTTCAGGTGTTGTC 58.588 43.478 0.00 0.00 0.00 3.18
335 336 0.375454 TTCAGGTGTTGTCGTTTGCG 59.625 50.000 0.00 0.00 39.92 4.85
341 342 3.808726 AGGTGTTGTCGTTTGCGTATTAA 59.191 39.130 0.00 0.00 39.49 1.40
361 362 7.838079 ATTAATTTGCAGGGCTGATTACATA 57.162 32.000 0.00 0.00 0.00 2.29
362 363 5.520376 AATTTGCAGGGCTGATTACATAC 57.480 39.130 0.00 0.00 0.00 2.39
363 364 3.643199 TTGCAGGGCTGATTACATACA 57.357 42.857 0.00 0.00 0.00 2.29
364 365 3.862877 TGCAGGGCTGATTACATACAT 57.137 42.857 0.00 0.00 0.00 2.29
365 366 3.743521 TGCAGGGCTGATTACATACATC 58.256 45.455 0.00 0.00 0.00 3.06
366 367 3.136260 TGCAGGGCTGATTACATACATCA 59.864 43.478 0.00 0.00 0.00 3.07
367 368 4.202493 TGCAGGGCTGATTACATACATCAT 60.202 41.667 0.00 0.00 30.15 2.45
368 369 5.012975 TGCAGGGCTGATTACATACATCATA 59.987 40.000 0.00 0.00 30.15 2.15
369 370 6.118170 GCAGGGCTGATTACATACATCATAT 58.882 40.000 0.00 0.00 30.15 1.78
402 409 1.226974 GACGCGAGCAGGCTGATTA 60.227 57.895 20.86 0.00 0.00 1.75
406 413 1.331756 CGCGAGCAGGCTGATTAATTT 59.668 47.619 20.86 0.00 0.00 1.82
422 429 1.549203 ATTTGAATCCGCAGCAACCT 58.451 45.000 0.00 0.00 0.00 3.50
483 491 4.400251 TCATGTTTGCAATTCCCATCTCTC 59.600 41.667 0.00 0.00 0.00 3.20
564 572 5.888105 TGCGAGTACCTCTAGATGTTTTAC 58.112 41.667 5.96 0.00 0.00 2.01
568 576 7.468906 GCGAGTACCTCTAGATGTTTTACAGAT 60.469 40.741 5.96 0.00 0.00 2.90
569 577 8.407064 CGAGTACCTCTAGATGTTTTACAGATT 58.593 37.037 5.96 0.00 0.00 2.40
571 579 8.697292 AGTACCTCTAGATGTTTTACAGATTCC 58.303 37.037 5.96 0.00 0.00 3.01
574 582 7.400339 ACCTCTAGATGTTTTACAGATTCCTCA 59.600 37.037 0.00 0.00 0.00 3.86
594 603 8.821686 TCCTCATTATTTTCAAGCCAAAGATA 57.178 30.769 0.00 0.00 0.00 1.98
595 604 9.425248 TCCTCATTATTTTCAAGCCAAAGATAT 57.575 29.630 0.00 0.00 0.00 1.63
649 658 6.142818 AGTTGTTGCACATTTTAGCAGTAA 57.857 33.333 0.00 0.00 42.39 2.24
656 665 3.063452 CACATTTTAGCAGTAACGGCGAT 59.937 43.478 16.62 3.59 36.08 4.58
658 667 2.658373 TTTAGCAGTAACGGCGATCA 57.342 45.000 16.62 0.00 36.08 2.92
661 670 1.154205 AGCAGTAACGGCGATCATGC 61.154 55.000 16.62 17.99 36.08 4.06
677 686 2.486592 TCATGCGTCTTCTAAGTCGACA 59.513 45.455 19.50 9.96 39.36 4.35
697 707 5.329035 ACAATTGTGGGCATTGATTAGTC 57.671 39.130 11.07 0.00 0.00 2.59
700 710 2.627945 TGTGGGCATTGATTAGTCGAC 58.372 47.619 7.70 7.70 0.00 4.20
704 714 3.876914 TGGGCATTGATTAGTCGACAATC 59.123 43.478 19.50 21.66 32.92 2.67
705 715 3.059597 GGGCATTGATTAGTCGACAATCG 60.060 47.826 19.50 12.16 42.10 3.34
706 716 3.555956 GGCATTGATTAGTCGACAATCGT 59.444 43.478 19.50 13.26 41.35 3.73
707 717 4.508971 GCATTGATTAGTCGACAATCGTG 58.491 43.478 19.50 21.96 41.35 4.35
843 863 2.283298 AGATGTTTGCGTGCATAGGAG 58.717 47.619 0.00 0.00 0.00 3.69
846 866 2.343101 TGTTTGCGTGCATAGGAGTAC 58.657 47.619 0.00 0.00 0.00 2.73
931 955 4.880886 TCAGACATGCCATTAATTGACG 57.119 40.909 0.00 0.00 0.00 4.35
1042 1082 3.680937 TGACGACGACAATTTTGGATACC 59.319 43.478 0.00 0.00 0.00 2.73
1112 1154 1.740332 GCTAGAGAGAACCTCCCCGC 61.740 65.000 0.00 0.00 42.97 6.13
1245 1300 4.643387 AACTGCAGTGCCGACCCC 62.643 66.667 22.49 0.00 0.00 4.95
1264 1319 3.569701 CCCCGATGGTGAAATAAGGAATG 59.430 47.826 0.00 0.00 0.00 2.67
1378 1433 2.764314 CCCTTCGAAGGCAATGGCG 61.764 63.158 34.54 17.69 45.10 5.69
1387 1442 0.392706 AGGCAATGGCGATGTCGATA 59.607 50.000 6.60 0.00 43.02 2.92
1493 1585 0.954452 CCTTCTGTTTGCCTGTGGTC 59.046 55.000 0.00 0.00 0.00 4.02
1627 1719 2.299297 ACCCCTCGAGAAGTTTACAGTG 59.701 50.000 15.71 0.00 0.00 3.66
1693 1785 9.862371 TCATTCAGTAATTTCTCTGTAGAAGAC 57.138 33.333 0.00 0.00 42.60 3.01
1765 1857 0.657840 GATGCATGCGTAACTGTCCC 59.342 55.000 13.55 0.00 0.00 4.46
1785 1877 2.737252 CCGAGCTGTTGGAAGAGTTTAC 59.263 50.000 0.00 0.00 0.00 2.01
1828 1921 3.878778 CCTGAAGGTACCCTTTCTCATG 58.121 50.000 8.74 0.00 44.82 3.07
1829 1922 3.274288 CTGAAGGTACCCTTTCTCATGC 58.726 50.000 8.74 0.00 44.82 4.06
1851 1944 4.438336 GCATCAAGGTGACATCATTCAGTG 60.438 45.833 0.00 0.00 0.00 3.66
1908 2009 2.546899 TCTCCTTTGCAGGCCTTAGTA 58.453 47.619 0.00 0.00 40.58 1.82
1962 10696 7.039714 GGTGTCCATATGAAAGAAGGTTTTTCT 60.040 37.037 3.65 0.00 35.94 2.52
1981 10715 2.612115 CCCCTCCTGCCCTGAACT 60.612 66.667 0.00 0.00 0.00 3.01
1988 10722 1.214175 TCCTGCCCTGAACTCAAACAA 59.786 47.619 0.00 0.00 0.00 2.83
1996 10921 4.641989 CCCTGAACTCAAACAATCCATAGG 59.358 45.833 0.00 0.00 0.00 2.57
2008 10933 5.815581 ACAATCCATAGGAAACTGCAGTTA 58.184 37.500 31.31 16.94 43.88 2.24
2288 11216 8.127327 CAGCTAATCCAAATCATACTTGTTCTG 58.873 37.037 0.00 0.00 0.00 3.02
2291 11219 6.839124 ATCCAAATCATACTTGTTCTGCAA 57.161 33.333 0.00 0.00 35.50 4.08
2365 11293 4.735985 TCAATGATGCTTTGATTTGTCCG 58.264 39.130 0.00 0.00 0.00 4.79
2371 11299 3.013921 TGCTTTGATTTGTCCGGTATCC 58.986 45.455 0.00 0.00 0.00 2.59
2474 11403 9.853555 CACCAGTTGCTAATTTGTTCATTATTA 57.146 29.630 0.00 0.00 0.00 0.98
2529 11458 2.030457 AGCGAATAACCGATGCTTTTCG 59.970 45.455 0.00 0.00 39.03 3.46
2536 11465 1.075542 CCGATGCTTTTCGTAGTGCA 58.924 50.000 0.00 0.00 37.42 4.57
2544 11473 3.844943 GCTTTTCGTAGTGCACTGTTGTC 60.845 47.826 29.57 12.53 0.00 3.18
2554 11483 3.561310 GTGCACTGTTGTCTTGAAGATGA 59.439 43.478 10.32 0.00 0.00 2.92
2555 11484 3.811497 TGCACTGTTGTCTTGAAGATGAG 59.189 43.478 0.00 0.00 0.00 2.90
2556 11485 3.812053 GCACTGTTGTCTTGAAGATGAGT 59.188 43.478 0.00 0.00 0.00 3.41
2557 11486 4.319333 GCACTGTTGTCTTGAAGATGAGTG 60.319 45.833 15.57 15.57 0.00 3.51
2558 11487 5.052481 CACTGTTGTCTTGAAGATGAGTGA 58.948 41.667 15.12 0.00 0.00 3.41
3058 12017 3.058432 GCCGGAAAGGTAGTTTCAACTTC 60.058 47.826 5.05 0.00 45.75 3.01
3059 12018 3.501062 CCGGAAAGGTAGTTTCAACTTCC 59.499 47.826 0.00 7.16 45.75 3.46
3060 12019 4.131596 CGGAAAGGTAGTTTCAACTTCCA 58.868 43.478 15.46 0.00 45.69 3.53
3098 12059 1.612950 TGGCACTTGTAACCAGCATTG 59.387 47.619 0.00 0.00 0.00 2.82
3260 12443 8.377799 TCAATATGCTAATCCTGACATACACAT 58.622 33.333 0.00 0.00 0.00 3.21
3325 12508 1.160137 GCAGATGGTGACTTGGACAC 58.840 55.000 0.00 0.00 37.51 3.67
3435 12618 5.447818 CGGCACCAGAAAAGATATTCTCAAC 60.448 44.000 0.00 0.00 37.56 3.18
3474 12657 7.413877 GCTTTCACTGACAATAATCTTCCTCTG 60.414 40.741 0.00 0.00 0.00 3.35
3620 12819 9.399403 GTCAATTTTTATTTCAGAGAGGTGAAC 57.601 33.333 0.00 0.00 36.15 3.18
3730 12935 2.632377 ACCATTGTGTCGGATGTCATC 58.368 47.619 4.06 4.06 0.00 2.92
3787 12992 2.906389 TGCTGGTTCTGTTAGAGATGGT 59.094 45.455 0.00 0.00 0.00 3.55
3801 13006 3.764434 AGAGATGGTTTGAGCTCTCGTTA 59.236 43.478 16.19 0.00 33.33 3.18
3835 13040 1.742268 ACTTCCGAACCTAGTACTCGC 59.258 52.381 0.00 0.00 0.00 5.03
3865 13070 3.876320 GGGACAAAAATGAAAAGCAGCAA 59.124 39.130 0.00 0.00 0.00 3.91
3996 13229 6.588719 TTGGTTGGAAGTCAAAGGAATATG 57.411 37.500 0.00 0.00 37.08 1.78
4093 13341 4.521130 AACAGACTACAGAATGCGAGAA 57.479 40.909 0.00 0.00 42.53 2.87
4098 13346 6.128445 ACAGACTACAGAATGCGAGAAATTTG 60.128 38.462 0.00 0.00 42.53 2.32
4223 13499 5.123027 GCAGATTTAAGGAGAAACTCACCAG 59.877 44.000 0.00 0.00 31.08 4.00
4476 13764 5.907207 ACACTGCTTATTCGTGTGAGATAT 58.093 37.500 0.00 0.00 40.11 1.63
4477 13765 7.039313 ACACTGCTTATTCGTGTGAGATATA 57.961 36.000 0.00 0.00 40.11 0.86
4478 13766 7.142021 ACACTGCTTATTCGTGTGAGATATAG 58.858 38.462 0.00 0.00 40.11 1.31
4479 13767 7.142021 CACTGCTTATTCGTGTGAGATATAGT 58.858 38.462 0.00 0.00 0.00 2.12
4480 13768 7.649705 CACTGCTTATTCGTGTGAGATATAGTT 59.350 37.037 0.00 0.00 0.00 2.24
4481 13769 8.847196 ACTGCTTATTCGTGTGAGATATAGTTA 58.153 33.333 0.00 0.00 0.00 2.24
4482 13770 9.335891 CTGCTTATTCGTGTGAGATATAGTTAG 57.664 37.037 0.00 0.00 0.00 2.34
4483 13771 8.297426 TGCTTATTCGTGTGAGATATAGTTAGG 58.703 37.037 0.00 0.00 0.00 2.69
4484 13772 7.273815 GCTTATTCGTGTGAGATATAGTTAGGC 59.726 40.741 0.00 0.00 0.00 3.93
4511 13807 9.331282 GCATAACTGATAATCCAGTCTTACTTT 57.669 33.333 0.00 0.00 45.82 2.66
4627 14099 0.317799 CATGATCGAGAGGAGCAGGG 59.682 60.000 0.00 0.00 45.58 4.45
4653 14125 6.910536 AAGCTCTTGATGATACCGTAAAAG 57.089 37.500 0.00 0.00 0.00 2.27
4811 14290 0.957888 GGTTCCTGTCAGCTTGGAGC 60.958 60.000 0.00 0.00 42.84 4.70
4816 14295 0.954449 CTGTCAGCTTGGAGCAGTGG 60.954 60.000 2.47 0.00 45.56 4.00
4832 14311 5.818136 GCAGTGGCTGAAATTAACTCATA 57.182 39.130 0.00 0.00 36.96 2.15
4839 14318 7.750903 GTGGCTGAAATTAACTCATAACTGAAC 59.249 37.037 0.00 0.00 0.00 3.18
4934 14415 9.607988 TGAATGTTATACCTTGGTGTAATACTG 57.392 33.333 11.21 0.00 0.00 2.74
4935 14416 9.609346 GAATGTTATACCTTGGTGTAATACTGT 57.391 33.333 11.21 0.83 0.00 3.55
4945 14426 9.221933 CCTTGGTGTAATACTGTAATGTAACAA 57.778 33.333 0.00 0.00 0.00 2.83
4963 14444 9.836864 ATGTAACAAGCTAGATGTGATTATTCA 57.163 29.630 0.00 0.00 0.00 2.57
5153 14634 9.543018 CTCTAGTCCGTTGAATTTAATTGAAAC 57.457 33.333 0.00 0.00 0.00 2.78
5331 14862 2.948979 TGTTGTGCTAAGGACAGGTTTG 59.051 45.455 0.00 0.00 0.00 2.93
5345 14876 4.425577 CAGGTTTGAGCTGTACAATTCC 57.574 45.455 0.00 0.00 38.80 3.01
5440 14971 4.716784 ACAGCTCTAACATCCCATTAGTGA 59.283 41.667 0.00 0.00 32.46 3.41
5501 15033 2.153645 CACCAGCAGTACAAAGCATCA 58.846 47.619 0.00 0.00 0.00 3.07
5512 15044 7.329226 GCAGTACAAAGCATCACAAACATAATT 59.671 33.333 0.00 0.00 0.00 1.40
5518 15050 9.514822 CAAAGCATCACAAACATAATTAAAACG 57.485 29.630 0.00 0.00 0.00 3.60
5519 15051 7.810766 AGCATCACAAACATAATTAAAACGG 57.189 32.000 0.00 0.00 0.00 4.44
5532 15064 4.857871 TTAAAACGGCATCGAGATTCTG 57.142 40.909 0.00 0.00 40.11 3.02
5533 15065 2.672961 AAACGGCATCGAGATTCTGA 57.327 45.000 0.00 0.00 40.11 3.27
5552 15084 0.179056 AGACCACCGAACAACCACTG 60.179 55.000 0.00 0.00 0.00 3.66
5553 15085 0.463116 GACCACCGAACAACCACTGT 60.463 55.000 0.00 0.00 41.27 3.55
5568 15101 1.071471 CTGTTGCCCCAGAACGAGT 59.929 57.895 0.00 0.00 34.23 4.18
5579 15112 4.415332 AACGAGTCGCCGACGCAT 62.415 61.111 20.45 2.20 37.67 4.73
5580 15113 4.831307 ACGAGTCGCCGACGCATC 62.831 66.667 20.45 8.23 37.67 3.91
5581 15114 4.538283 CGAGTCGCCGACGCATCT 62.538 66.667 20.45 0.00 37.67 2.90
5582 15115 2.652496 GAGTCGCCGACGCATCTC 60.652 66.667 16.15 1.79 37.67 2.75
5583 15116 3.114647 GAGTCGCCGACGCATCTCT 62.115 63.158 16.15 0.00 37.67 3.10
5584 15117 2.951745 GTCGCCGACGCATCTCTG 60.952 66.667 0.00 0.00 39.84 3.35
5585 15118 3.440415 TCGCCGACGCATCTCTGT 61.440 61.111 0.00 0.00 39.84 3.41
5586 15119 2.951745 CGCCGACGCATCTCTGTC 60.952 66.667 0.00 0.00 34.03 3.51
5587 15120 2.583593 GCCGACGCATCTCTGTCC 60.584 66.667 0.00 0.00 34.03 4.02
5588 15121 3.069980 GCCGACGCATCTCTGTCCT 62.070 63.158 0.00 0.00 34.03 3.85
5589 15122 1.064946 CCGACGCATCTCTGTCCTC 59.935 63.158 0.00 0.00 0.00 3.71
5590 15123 1.064946 CGACGCATCTCTGTCCTCC 59.935 63.158 0.00 0.00 0.00 4.30
5591 15124 1.439644 GACGCATCTCTGTCCTCCC 59.560 63.158 0.00 0.00 0.00 4.30
5592 15125 1.000993 ACGCATCTCTGTCCTCCCT 59.999 57.895 0.00 0.00 0.00 4.20
5593 15126 0.616111 ACGCATCTCTGTCCTCCCTT 60.616 55.000 0.00 0.00 0.00 3.95
5594 15127 0.179089 CGCATCTCTGTCCTCCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
5595 15128 0.179936 GCATCTCTGTCCTCCCTTGG 59.820 60.000 0.00 0.00 0.00 3.61
5596 15129 1.871418 CATCTCTGTCCTCCCTTGGA 58.129 55.000 0.00 0.00 0.00 3.53
5597 15130 2.406559 CATCTCTGTCCTCCCTTGGAT 58.593 52.381 0.00 0.00 38.52 3.41
5598 15131 2.649742 TCTCTGTCCTCCCTTGGATT 57.350 50.000 0.00 0.00 38.52 3.01
5599 15132 3.776731 TCTCTGTCCTCCCTTGGATTA 57.223 47.619 0.00 0.00 38.52 1.75
5600 15133 4.286813 TCTCTGTCCTCCCTTGGATTAT 57.713 45.455 0.00 0.00 38.52 1.28
5601 15134 4.635473 TCTCTGTCCTCCCTTGGATTATT 58.365 43.478 0.00 0.00 38.52 1.40
5602 15135 4.656112 TCTCTGTCCTCCCTTGGATTATTC 59.344 45.833 0.00 0.00 38.52 1.75
5603 15136 4.370776 TCTGTCCTCCCTTGGATTATTCA 58.629 43.478 0.00 0.00 38.52 2.57
5604 15137 4.410228 TCTGTCCTCCCTTGGATTATTCAG 59.590 45.833 0.00 0.00 38.52 3.02
5605 15138 4.370776 TGTCCTCCCTTGGATTATTCAGA 58.629 43.478 0.00 0.00 38.52 3.27
5606 15139 4.410228 TGTCCTCCCTTGGATTATTCAGAG 59.590 45.833 0.00 0.00 38.52 3.35
5607 15140 3.976654 TCCTCCCTTGGATTATTCAGAGG 59.023 47.826 1.91 1.91 40.85 3.69
5608 15141 3.976654 CCTCCCTTGGATTATTCAGAGGA 59.023 47.826 2.10 0.00 41.82 3.71
5609 15142 4.413520 CCTCCCTTGGATTATTCAGAGGAA 59.586 45.833 2.10 0.00 41.82 3.36
5610 15143 5.103940 CCTCCCTTGGATTATTCAGAGGAAA 60.104 44.000 2.10 0.00 41.82 3.13
5611 15144 6.006275 TCCCTTGGATTATTCAGAGGAAAG 57.994 41.667 4.12 0.00 36.43 2.62
5612 15145 5.103940 TCCCTTGGATTATTCAGAGGAAAGG 60.104 44.000 4.12 0.00 36.43 3.11
5613 15146 4.582240 CCTTGGATTATTCAGAGGAAAGGC 59.418 45.833 0.00 0.00 36.43 4.35
5614 15147 5.444176 CTTGGATTATTCAGAGGAAAGGCT 58.556 41.667 0.00 0.00 36.43 4.58
5615 15148 5.041191 TGGATTATTCAGAGGAAAGGCTC 57.959 43.478 0.00 0.00 36.43 4.70
5616 15149 4.061596 GGATTATTCAGAGGAAAGGCTCG 58.938 47.826 0.00 0.00 36.43 5.03
5617 15150 4.202264 GGATTATTCAGAGGAAAGGCTCGA 60.202 45.833 0.00 0.00 36.43 4.04
5618 15151 5.512232 GGATTATTCAGAGGAAAGGCTCGAT 60.512 44.000 0.00 0.00 36.43 3.59
5619 15152 2.680312 TTCAGAGGAAAGGCTCGATG 57.320 50.000 0.00 0.00 0.00 3.84
5620 15153 1.852633 TCAGAGGAAAGGCTCGATGA 58.147 50.000 0.00 0.00 0.00 2.92
5621 15154 2.179427 TCAGAGGAAAGGCTCGATGAA 58.821 47.619 0.00 0.00 0.00 2.57
5622 15155 2.768527 TCAGAGGAAAGGCTCGATGAAT 59.231 45.455 0.00 0.00 0.00 2.57
5623 15156 2.871022 CAGAGGAAAGGCTCGATGAATG 59.129 50.000 0.00 0.00 0.00 2.67
5624 15157 2.503356 AGAGGAAAGGCTCGATGAATGT 59.497 45.455 0.00 0.00 0.00 2.71
5625 15158 3.054802 AGAGGAAAGGCTCGATGAATGTT 60.055 43.478 0.00 0.00 0.00 2.71
5626 15159 3.690460 AGGAAAGGCTCGATGAATGTTT 58.310 40.909 0.00 0.00 0.00 2.83
5627 15160 4.082125 AGGAAAGGCTCGATGAATGTTTT 58.918 39.130 0.00 0.00 0.00 2.43
5628 15161 4.082571 AGGAAAGGCTCGATGAATGTTTTG 60.083 41.667 0.00 0.00 0.00 2.44
5629 15162 4.082787 GGAAAGGCTCGATGAATGTTTTGA 60.083 41.667 0.00 0.00 0.00 2.69
5630 15163 5.393461 GGAAAGGCTCGATGAATGTTTTGAT 60.393 40.000 0.00 0.00 0.00 2.57
5631 15164 5.649782 AAGGCTCGATGAATGTTTTGATT 57.350 34.783 0.00 0.00 0.00 2.57
5632 15165 5.649782 AGGCTCGATGAATGTTTTGATTT 57.350 34.783 0.00 0.00 0.00 2.17
5633 15166 6.757897 AGGCTCGATGAATGTTTTGATTTA 57.242 33.333 0.00 0.00 0.00 1.40
5634 15167 6.789262 AGGCTCGATGAATGTTTTGATTTAG 58.211 36.000 0.00 0.00 0.00 1.85
5635 15168 6.375455 AGGCTCGATGAATGTTTTGATTTAGT 59.625 34.615 0.00 0.00 0.00 2.24
5636 15169 7.029563 GGCTCGATGAATGTTTTGATTTAGTT 58.970 34.615 0.00 0.00 0.00 2.24
5637 15170 7.542130 GGCTCGATGAATGTTTTGATTTAGTTT 59.458 33.333 0.00 0.00 0.00 2.66
5638 15171 8.368126 GCTCGATGAATGTTTTGATTTAGTTTG 58.632 33.333 0.00 0.00 0.00 2.93
5639 15172 9.611284 CTCGATGAATGTTTTGATTTAGTTTGA 57.389 29.630 0.00 0.00 0.00 2.69
5667 15200 8.973182 AGTTAGTCCTTATTTTAGTCCTCTCTG 58.027 37.037 0.00 0.00 0.00 3.35
5668 15201 8.751242 GTTAGTCCTTATTTTAGTCCTCTCTGT 58.249 37.037 0.00 0.00 0.00 3.41
5669 15202 7.412853 AGTCCTTATTTTAGTCCTCTCTGTC 57.587 40.000 0.00 0.00 0.00 3.51
5670 15203 6.095720 AGTCCTTATTTTAGTCCTCTCTGTCG 59.904 42.308 0.00 0.00 0.00 4.35
5671 15204 6.095160 GTCCTTATTTTAGTCCTCTCTGTCGA 59.905 42.308 0.00 0.00 0.00 4.20
5672 15205 6.662234 TCCTTATTTTAGTCCTCTCTGTCGAA 59.338 38.462 0.00 0.00 0.00 3.71
5673 15206 7.342284 TCCTTATTTTAGTCCTCTCTGTCGAAT 59.658 37.037 0.00 0.00 0.00 3.34
5674 15207 7.982354 CCTTATTTTAGTCCTCTCTGTCGAATT 59.018 37.037 0.00 0.00 0.00 2.17
5675 15208 9.372369 CTTATTTTAGTCCTCTCTGTCGAATTT 57.628 33.333 0.00 0.00 0.00 1.82
5676 15209 7.602517 ATTTTAGTCCTCTCTGTCGAATTTG 57.397 36.000 0.00 0.00 0.00 2.32
5677 15210 3.601443 AGTCCTCTCTGTCGAATTTGG 57.399 47.619 0.00 0.00 0.00 3.28
5678 15211 2.900546 AGTCCTCTCTGTCGAATTTGGT 59.099 45.455 0.00 0.00 0.00 3.67
5679 15212 2.996621 GTCCTCTCTGTCGAATTTGGTG 59.003 50.000 0.00 0.00 0.00 4.17
5680 15213 2.897326 TCCTCTCTGTCGAATTTGGTGA 59.103 45.455 0.00 0.00 0.00 4.02
5681 15214 3.323691 TCCTCTCTGTCGAATTTGGTGAA 59.676 43.478 0.00 0.00 0.00 3.18
5682 15215 4.065088 CCTCTCTGTCGAATTTGGTGAAA 58.935 43.478 0.00 0.00 0.00 2.69
5683 15216 4.515191 CCTCTCTGTCGAATTTGGTGAAAA 59.485 41.667 0.00 0.00 0.00 2.29
5684 15217 5.008613 CCTCTCTGTCGAATTTGGTGAAAAA 59.991 40.000 0.00 0.00 0.00 1.94
5685 15218 5.816919 TCTCTGTCGAATTTGGTGAAAAAC 58.183 37.500 0.00 0.00 0.00 2.43
5686 15219 5.588648 TCTCTGTCGAATTTGGTGAAAAACT 59.411 36.000 0.00 0.00 0.00 2.66
5687 15220 6.764085 TCTCTGTCGAATTTGGTGAAAAACTA 59.236 34.615 0.00 0.00 0.00 2.24
5688 15221 6.954944 TCTGTCGAATTTGGTGAAAAACTAG 58.045 36.000 0.00 0.00 0.00 2.57
5689 15222 6.540914 TCTGTCGAATTTGGTGAAAAACTAGT 59.459 34.615 0.00 0.00 0.00 2.57
5690 15223 6.721321 TGTCGAATTTGGTGAAAAACTAGTC 58.279 36.000 0.00 0.00 0.00 2.59
5691 15224 6.316640 TGTCGAATTTGGTGAAAAACTAGTCA 59.683 34.615 0.00 0.00 0.00 3.41
5692 15225 6.851330 GTCGAATTTGGTGAAAAACTAGTCAG 59.149 38.462 0.00 0.00 0.00 3.51
5693 15226 6.764085 TCGAATTTGGTGAAAAACTAGTCAGA 59.236 34.615 0.00 0.00 0.00 3.27
5694 15227 6.851330 CGAATTTGGTGAAAAACTAGTCAGAC 59.149 38.462 0.00 0.00 0.00 3.51
5695 15228 7.466725 CGAATTTGGTGAAAAACTAGTCAGACA 60.467 37.037 2.66 0.00 0.00 3.41
5696 15229 7.639113 ATTTGGTGAAAAACTAGTCAGACAA 57.361 32.000 2.66 0.00 0.00 3.18
5697 15230 6.431198 TTGGTGAAAAACTAGTCAGACAAC 57.569 37.500 2.66 0.00 0.00 3.32
5698 15231 5.492895 TGGTGAAAAACTAGTCAGACAACA 58.507 37.500 2.66 1.34 0.00 3.33
5699 15232 5.941058 TGGTGAAAAACTAGTCAGACAACAA 59.059 36.000 2.66 0.00 0.00 2.83
5700 15233 6.601613 TGGTGAAAAACTAGTCAGACAACAAT 59.398 34.615 2.66 0.00 0.00 2.71
5701 15234 7.122055 TGGTGAAAAACTAGTCAGACAACAATT 59.878 33.333 2.66 0.00 0.00 2.32
5702 15235 7.973944 GGTGAAAAACTAGTCAGACAACAATTT 59.026 33.333 2.66 0.00 0.00 1.82
5703 15236 9.997482 GTGAAAAACTAGTCAGACAACAATTTA 57.003 29.630 2.66 0.00 0.00 1.40
5717 15250 9.143631 AGACAACAATTTAATCTTTTATGCTGC 57.856 29.630 0.00 0.00 0.00 5.25
5718 15251 8.830201 ACAACAATTTAATCTTTTATGCTGCA 57.170 26.923 4.13 4.13 0.00 4.41
5719 15252 9.439500 ACAACAATTTAATCTTTTATGCTGCAT 57.561 25.926 20.18 20.18 0.00 3.96
5722 15255 8.885722 ACAATTTAATCTTTTATGCTGCATTGG 58.114 29.630 21.56 8.66 0.00 3.16
5723 15256 8.339714 CAATTTAATCTTTTATGCTGCATTGGG 58.660 33.333 21.56 8.99 0.00 4.12
5724 15257 6.543430 TTAATCTTTTATGCTGCATTGGGT 57.457 33.333 21.56 0.00 0.00 4.51
5725 15258 4.660789 ATCTTTTATGCTGCATTGGGTC 57.339 40.909 21.56 0.00 0.00 4.46
5726 15259 3.429492 TCTTTTATGCTGCATTGGGTCA 58.571 40.909 21.56 0.00 0.00 4.02
5727 15260 3.831333 TCTTTTATGCTGCATTGGGTCAA 59.169 39.130 21.56 4.76 0.00 3.18
5728 15261 4.282957 TCTTTTATGCTGCATTGGGTCAAA 59.717 37.500 21.56 10.87 0.00 2.69
5729 15262 4.822685 TTTATGCTGCATTGGGTCAAAT 57.177 36.364 21.56 0.00 0.00 2.32
5730 15263 5.929058 TTTATGCTGCATTGGGTCAAATA 57.071 34.783 21.56 0.00 0.00 1.40
5731 15264 5.929058 TTATGCTGCATTGGGTCAAATAA 57.071 34.783 21.56 1.67 0.00 1.40
5732 15265 6.482898 TTATGCTGCATTGGGTCAAATAAT 57.517 33.333 21.56 0.00 0.00 1.28
5733 15266 4.822685 TGCTGCATTGGGTCAAATAATT 57.177 36.364 0.00 0.00 0.00 1.40
5734 15267 5.929058 TGCTGCATTGGGTCAAATAATTA 57.071 34.783 0.00 0.00 0.00 1.40
5735 15268 6.482898 TGCTGCATTGGGTCAAATAATTAT 57.517 33.333 0.00 0.00 0.00 1.28
5736 15269 6.282167 TGCTGCATTGGGTCAAATAATTATG 58.718 36.000 0.00 0.00 0.00 1.90
5737 15270 5.178067 GCTGCATTGGGTCAAATAATTATGC 59.822 40.000 0.00 0.00 38.04 3.14
5738 15271 5.288015 TGCATTGGGTCAAATAATTATGCG 58.712 37.500 0.00 0.00 39.84 4.73
5739 15272 5.163468 TGCATTGGGTCAAATAATTATGCGT 60.163 36.000 0.00 0.00 39.84 5.24
5740 15273 5.175491 GCATTGGGTCAAATAATTATGCGTG 59.825 40.000 0.00 0.00 0.00 5.34
5741 15274 4.300189 TGGGTCAAATAATTATGCGTGC 57.700 40.909 0.00 0.00 0.00 5.34
5742 15275 3.696548 TGGGTCAAATAATTATGCGTGCA 59.303 39.130 0.00 0.00 0.00 4.57
5743 15276 4.202000 TGGGTCAAATAATTATGCGTGCAG 60.202 41.667 0.00 0.00 0.00 4.41
5744 15277 4.036262 GGGTCAAATAATTATGCGTGCAGA 59.964 41.667 0.00 0.00 0.00 4.26
5745 15278 5.278463 GGGTCAAATAATTATGCGTGCAGAT 60.278 40.000 0.00 0.00 0.00 2.90
5746 15279 6.072728 GGGTCAAATAATTATGCGTGCAGATA 60.073 38.462 0.00 0.00 0.00 1.98
5747 15280 7.359595 GGTCAAATAATTATGCGTGCAGATAA 58.640 34.615 0.00 0.00 0.00 1.75
5748 15281 7.860373 GGTCAAATAATTATGCGTGCAGATAAA 59.140 33.333 0.00 0.00 0.00 1.40
5749 15282 9.232082 GTCAAATAATTATGCGTGCAGATAAAA 57.768 29.630 0.00 0.00 0.00 1.52
5750 15283 9.449550 TCAAATAATTATGCGTGCAGATAAAAG 57.550 29.630 0.00 0.00 0.00 2.27
5751 15284 9.236691 CAAATAATTATGCGTGCAGATAAAAGT 57.763 29.630 0.00 0.00 0.00 2.66
5752 15285 9.801873 AAATAATTATGCGTGCAGATAAAAGTT 57.198 25.926 0.00 0.00 0.00 2.66
5753 15286 9.801873 AATAATTATGCGTGCAGATAAAAGTTT 57.198 25.926 0.00 0.00 0.00 2.66
5754 15287 9.801873 ATAATTATGCGTGCAGATAAAAGTTTT 57.198 25.926 6.06 6.06 0.00 2.43
5755 15288 6.926280 TTATGCGTGCAGATAAAAGTTTTG 57.074 33.333 11.18 0.00 0.00 2.44
5756 15289 4.560136 TGCGTGCAGATAAAAGTTTTGA 57.440 36.364 11.18 0.00 0.00 2.69
5757 15290 5.119931 TGCGTGCAGATAAAAGTTTTGAT 57.880 34.783 11.18 1.24 0.00 2.57
5758 15291 4.916831 TGCGTGCAGATAAAAGTTTTGATG 59.083 37.500 11.18 7.77 0.00 3.07
5759 15292 5.153513 GCGTGCAGATAAAAGTTTTGATGA 58.846 37.500 11.18 0.00 0.00 2.92
5760 15293 5.629020 GCGTGCAGATAAAAGTTTTGATGAA 59.371 36.000 11.18 0.00 0.00 2.57
5761 15294 6.308766 GCGTGCAGATAAAAGTTTTGATGAAT 59.691 34.615 11.18 0.00 0.00 2.57
5762 15295 7.148755 GCGTGCAGATAAAAGTTTTGATGAATT 60.149 33.333 11.18 0.00 0.00 2.17
5763 15296 8.702438 CGTGCAGATAAAAGTTTTGATGAATTT 58.298 29.630 11.18 0.00 0.00 1.82
5787 15320 8.732746 TTTATTTTACTTGACAGGGATCTAGC 57.267 34.615 0.00 0.00 0.00 3.42
5788 15321 5.755409 TTTTACTTGACAGGGATCTAGCA 57.245 39.130 0.00 0.00 0.00 3.49
5789 15322 5.344743 TTTACTTGACAGGGATCTAGCAG 57.655 43.478 0.00 0.00 0.00 4.24
5790 15323 3.107402 ACTTGACAGGGATCTAGCAGA 57.893 47.619 0.00 0.00 0.00 4.26
5791 15324 3.445008 ACTTGACAGGGATCTAGCAGAA 58.555 45.455 0.00 0.00 0.00 3.02
5792 15325 3.196685 ACTTGACAGGGATCTAGCAGAAC 59.803 47.826 0.00 0.00 0.00 3.01
5793 15326 2.820178 TGACAGGGATCTAGCAGAACA 58.180 47.619 0.00 0.00 0.00 3.18
5794 15327 2.497675 TGACAGGGATCTAGCAGAACAC 59.502 50.000 0.00 0.00 0.00 3.32
5795 15328 2.763448 GACAGGGATCTAGCAGAACACT 59.237 50.000 0.00 0.00 30.18 3.55
5796 15329 2.763448 ACAGGGATCTAGCAGAACACTC 59.237 50.000 0.00 0.00 27.25 3.51
5797 15330 2.762887 CAGGGATCTAGCAGAACACTCA 59.237 50.000 0.00 0.00 27.25 3.41
5798 15331 3.387374 CAGGGATCTAGCAGAACACTCAT 59.613 47.826 0.00 0.00 27.25 2.90
5799 15332 4.036518 AGGGATCTAGCAGAACACTCATT 58.963 43.478 0.00 0.00 21.75 2.57
5800 15333 4.472833 AGGGATCTAGCAGAACACTCATTT 59.527 41.667 0.00 0.00 21.75 2.32
5801 15334 5.663106 AGGGATCTAGCAGAACACTCATTTA 59.337 40.000 0.00 0.00 21.75 1.40
5802 15335 5.988561 GGGATCTAGCAGAACACTCATTTAG 59.011 44.000 0.00 0.00 0.00 1.85
5803 15336 5.988561 GGATCTAGCAGAACACTCATTTAGG 59.011 44.000 0.00 0.00 0.00 2.69
5804 15337 6.407525 GGATCTAGCAGAACACTCATTTAGGT 60.408 42.308 0.00 0.00 0.00 3.08
5805 15338 7.201920 GGATCTAGCAGAACACTCATTTAGGTA 60.202 40.741 0.00 0.00 0.00 3.08
5806 15339 7.476540 TCTAGCAGAACACTCATTTAGGTAA 57.523 36.000 0.00 0.00 0.00 2.85
5807 15340 7.903145 TCTAGCAGAACACTCATTTAGGTAAA 58.097 34.615 0.00 0.00 0.00 2.01
5808 15341 6.803154 AGCAGAACACTCATTTAGGTAAAC 57.197 37.500 0.00 0.00 0.00 2.01
5809 15342 5.705905 AGCAGAACACTCATTTAGGTAAACC 59.294 40.000 0.00 0.00 0.00 3.27
5810 15343 5.472137 GCAGAACACTCATTTAGGTAAACCA 59.528 40.000 1.26 0.00 38.89 3.67
5811 15344 6.151144 GCAGAACACTCATTTAGGTAAACCAT 59.849 38.462 1.26 0.00 38.89 3.55
5812 15345 7.309194 GCAGAACACTCATTTAGGTAAACCATT 60.309 37.037 1.26 0.00 38.89 3.16
5813 15346 8.023128 CAGAACACTCATTTAGGTAAACCATTG 58.977 37.037 1.26 0.00 38.89 2.82
5814 15347 7.942341 AGAACACTCATTTAGGTAAACCATTGA 59.058 33.333 1.26 0.00 38.89 2.57
5815 15348 8.650143 AACACTCATTTAGGTAAACCATTGAT 57.350 30.769 1.26 0.00 38.89 2.57
5816 15349 8.650143 ACACTCATTTAGGTAAACCATTGATT 57.350 30.769 1.26 0.00 38.89 2.57
5817 15350 9.088987 ACACTCATTTAGGTAAACCATTGATTT 57.911 29.630 1.26 0.00 38.89 2.17
5818 15351 9.573133 CACTCATTTAGGTAAACCATTGATTTC 57.427 33.333 1.26 0.00 38.89 2.17
5819 15352 9.308000 ACTCATTTAGGTAAACCATTGATTTCA 57.692 29.630 1.26 0.00 38.89 2.69
5827 15360 9.308000 AGGTAAACCATTGATTTCATTTAGTCA 57.692 29.630 1.26 0.00 38.89 3.41
5828 15361 9.353999 GGTAAACCATTGATTTCATTTAGTCAC 57.646 33.333 0.00 0.00 35.64 3.67
5829 15362 9.906660 GTAAACCATTGATTTCATTTAGTCACA 57.093 29.630 0.00 0.00 0.00 3.58
5830 15363 8.816640 AAACCATTGATTTCATTTAGTCACAC 57.183 30.769 0.00 0.00 0.00 3.82
5831 15364 7.765695 ACCATTGATTTCATTTAGTCACACT 57.234 32.000 0.00 0.00 0.00 3.55
5832 15365 7.596494 ACCATTGATTTCATTTAGTCACACTG 58.404 34.615 0.00 0.00 0.00 3.66
5833 15366 7.231317 ACCATTGATTTCATTTAGTCACACTGT 59.769 33.333 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.417586 TCGTCGATTTAGAAGACTCGCA 59.582 45.455 0.00 0.00 33.10 5.10
36 37 2.797087 GCCCACGATCGTCGATTTAGAA 60.797 50.000 19.84 0.00 43.74 2.10
42 43 0.875908 CAATGCCCACGATCGTCGAT 60.876 55.000 19.84 7.63 43.74 3.59
55 56 5.127682 ACCTCATTTTCCACTAATCAATGCC 59.872 40.000 0.00 0.00 0.00 4.40
73 74 1.739067 GCGACTAGCCAAAACCTCAT 58.261 50.000 0.00 0.00 40.81 2.90
85 86 3.000078 ACGATTGTAAAATGCGCGACTAG 60.000 43.478 12.10 0.00 0.00 2.57
93 94 3.733024 TCCGACACGATTGTAAAATGC 57.267 42.857 0.00 0.00 35.47 3.56
167 168 2.414293 CGTGTAGTGGCAGAGACAGTAC 60.414 54.545 10.24 10.24 45.03 2.73
168 169 1.810755 CGTGTAGTGGCAGAGACAGTA 59.189 52.381 0.00 0.00 0.00 2.74
176 177 2.370281 AACATCTCGTGTAGTGGCAG 57.630 50.000 0.00 0.00 41.14 4.85
183 184 6.040247 CCTATAACTGCAAACATCTCGTGTA 58.960 40.000 0.00 0.00 41.14 2.90
187 188 6.851222 ATTCCTATAACTGCAAACATCTCG 57.149 37.500 0.00 0.00 0.00 4.04
202 203 9.772973 AGTGTGTTTCGCAATTATATTCCTATA 57.227 29.630 0.00 0.00 0.00 1.31
218 219 3.628487 TCCCCTTTGTTTAGTGTGTTTCG 59.372 43.478 0.00 0.00 0.00 3.46
226 227 1.605232 CGCGTTTCCCCTTTGTTTAGT 59.395 47.619 0.00 0.00 0.00 2.24
232 233 2.153547 ATTGCCGCGTTTCCCCTTTG 62.154 55.000 4.92 0.00 0.00 2.77
233 234 0.609681 TATTGCCGCGTTTCCCCTTT 60.610 50.000 4.92 0.00 0.00 3.11
240 241 6.016610 ACCAAAATCTATATATTGCCGCGTTT 60.017 34.615 4.92 0.00 0.00 3.60
243 244 5.545658 ACCAAAATCTATATATTGCCGCG 57.454 39.130 0.00 0.00 0.00 6.46
256 257 7.389053 GTGTCAATTCTGAGACTACCAAAATCT 59.611 37.037 0.00 0.00 41.52 2.40
278 279 3.108144 GCGTCAATTAATGGCATGTGTC 58.892 45.455 0.00 0.00 31.20 3.67
280 281 3.148026 TGCGTCAATTAATGGCATGTG 57.852 42.857 0.00 0.00 31.20 3.21
286 287 6.128956 ACAAACGAAAATGCGTCAATTAATGG 60.129 34.615 0.00 0.00 44.86 3.16
315 316 1.202087 CGCAAACGACAACACCTGAAA 60.202 47.619 0.00 0.00 43.93 2.69
317 318 0.741574 ACGCAAACGACAACACCTGA 60.742 50.000 0.00 0.00 43.93 3.86
335 336 7.038154 TGTAATCAGCCCTGCAAATTAATAC 57.962 36.000 0.00 0.00 0.00 1.89
341 342 4.535781 TGTATGTAATCAGCCCTGCAAAT 58.464 39.130 0.00 0.00 0.00 2.32
361 362 5.483937 TCCACGGGATAAGCTAATATGATGT 59.516 40.000 0.00 0.00 0.00 3.06
362 363 5.812642 GTCCACGGGATAAGCTAATATGATG 59.187 44.000 0.00 0.00 32.73 3.07
363 364 5.394224 CGTCCACGGGATAAGCTAATATGAT 60.394 44.000 0.00 0.00 32.73 2.45
364 365 4.082408 CGTCCACGGGATAAGCTAATATGA 60.082 45.833 0.00 0.00 32.73 2.15
365 366 4.174009 CGTCCACGGGATAAGCTAATATG 58.826 47.826 0.00 0.00 32.73 1.78
366 367 3.368116 GCGTCCACGGGATAAGCTAATAT 60.368 47.826 0.55 0.00 40.23 1.28
367 368 2.029649 GCGTCCACGGGATAAGCTAATA 60.030 50.000 0.55 0.00 40.23 0.98
368 369 1.270147 GCGTCCACGGGATAAGCTAAT 60.270 52.381 0.55 0.00 40.23 1.73
369 370 0.103572 GCGTCCACGGGATAAGCTAA 59.896 55.000 0.55 0.00 40.23 3.09
402 409 1.895131 AGGTTGCTGCGGATTCAAATT 59.105 42.857 0.00 0.00 0.00 1.82
406 413 0.597568 CAAAGGTTGCTGCGGATTCA 59.402 50.000 0.00 0.00 0.00 2.57
483 491 7.928307 TCCAGAAAAAGGAATCAACTATGAG 57.072 36.000 0.00 0.00 39.39 2.90
564 572 7.104043 TGGCTTGAAAATAATGAGGAATCTG 57.896 36.000 0.00 0.00 0.00 2.90
568 576 7.537596 TCTTTGGCTTGAAAATAATGAGGAA 57.462 32.000 0.00 0.00 0.00 3.36
569 577 7.722949 ATCTTTGGCTTGAAAATAATGAGGA 57.277 32.000 0.00 0.00 0.00 3.71
649 658 1.878522 GAAGACGCATGATCGCCGT 60.879 57.895 0.00 5.03 37.99 5.68
656 665 2.486592 TGTCGACTTAGAAGACGCATGA 59.513 45.455 17.92 0.00 42.37 3.07
658 667 3.570926 TTGTCGACTTAGAAGACGCAT 57.429 42.857 17.92 0.00 42.37 4.73
661 670 4.090066 CCACAATTGTCGACTTAGAAGACG 59.910 45.833 17.92 7.65 43.61 4.18
677 686 4.096382 GTCGACTAATCAATGCCCACAATT 59.904 41.667 8.70 0.00 0.00 2.32
697 707 1.231221 TCCAAAACCCACGATTGTCG 58.769 50.000 0.00 0.00 46.93 4.35
700 710 4.732784 CAACTATCCAAAACCCACGATTG 58.267 43.478 0.00 0.00 0.00 2.67
704 714 1.883275 TGCAACTATCCAAAACCCACG 59.117 47.619 0.00 0.00 0.00 4.94
705 715 2.625790 TGTGCAACTATCCAAAACCCAC 59.374 45.455 0.00 0.00 38.04 4.61
706 716 2.950781 TGTGCAACTATCCAAAACCCA 58.049 42.857 0.00 0.00 38.04 4.51
707 717 4.535526 AATGTGCAACTATCCAAAACCC 57.464 40.909 0.00 0.00 38.04 4.11
843 863 4.752661 TTAGGGTGTTTCGCAATTGTAC 57.247 40.909 7.40 1.76 0.00 2.90
868 888 2.969821 TATATTGCCGCATTTCCCCT 57.030 45.000 0.00 0.00 0.00 4.79
993 1033 1.533625 TGGGAGACGCCATTTTCTTG 58.466 50.000 0.00 0.00 38.95 3.02
1245 1300 5.504665 GCAGACATTCCTTATTTCACCATCG 60.505 44.000 0.00 0.00 0.00 3.84
1264 1319 1.251251 ATGCAGTTTTCAGGGCAGAC 58.749 50.000 0.00 0.00 39.95 3.51
1378 1433 1.852895 GACAGCAACGGTATCGACATC 59.147 52.381 0.34 0.00 40.11 3.06
1402 1469 2.173519 CATTGGTTTCTGCATCAGGGT 58.826 47.619 0.00 0.00 31.51 4.34
1493 1585 3.975670 GGTAGTCGAAGATCATGTTAGCG 59.024 47.826 0.00 0.00 40.67 4.26
1592 1684 1.923395 GGGGTCATGGTCCTGTCCA 60.923 63.158 0.00 0.00 42.01 4.02
1765 1857 3.390135 TGTAAACTCTTCCAACAGCTCG 58.610 45.455 0.00 0.00 0.00 5.03
1785 1877 3.561725 GTCTGCCGGGAGAAAATTATCTG 59.438 47.826 28.68 0.00 0.00 2.90
1826 1919 4.274978 TGAATGATGTCACCTTGATGCAT 58.725 39.130 0.00 0.00 0.00 3.96
1827 1920 3.688235 TGAATGATGTCACCTTGATGCA 58.312 40.909 0.00 0.00 0.00 3.96
1828 1921 3.693085 ACTGAATGATGTCACCTTGATGC 59.307 43.478 0.00 0.00 0.00 3.91
1829 1922 4.698780 ACACTGAATGATGTCACCTTGATG 59.301 41.667 0.00 0.00 0.00 3.07
1883 1978 1.379642 GGCCTGCAAAGGAGAATCGG 61.380 60.000 0.00 0.00 34.37 4.18
1908 2009 6.532657 CCAAGCTGCGATTATCATTTTCTTTT 59.467 34.615 0.00 0.00 0.00 2.27
1981 10715 5.076182 TGCAGTTTCCTATGGATTGTTTGA 58.924 37.500 0.00 0.00 0.00 2.69
2008 10933 0.833287 AGTTACCGATCCTGCTGCAT 59.167 50.000 1.31 0.00 0.00 3.96
2048 10973 3.825014 GAGGCGACACTCCATTACCTATA 59.175 47.826 0.00 0.00 0.00 1.31
2111 11036 6.373005 TCAATTCTTGAGGTAGTCCATTCA 57.627 37.500 0.00 0.00 34.08 2.57
2264 11192 6.914757 GCAGAACAAGTATGATTTGGATTAGC 59.085 38.462 0.00 0.00 0.00 3.09
2288 11216 2.295253 AGAGGTATACACTGCGTTGC 57.705 50.000 5.01 0.00 0.00 4.17
2291 11219 4.888239 ACTCAATAGAGGTATACACTGCGT 59.112 41.667 5.01 0.00 46.44 5.24
2365 11293 0.393448 GGCTTTCCTCCTCGGATACC 59.607 60.000 0.00 0.00 42.70 2.73
2371 11299 0.178301 GGTTAGGGCTTTCCTCCTCG 59.822 60.000 0.00 0.00 44.06 4.63
2497 11426 8.600625 GCATCGGTTATTCGCTGATATATTTAA 58.399 33.333 0.00 0.00 31.36 1.52
2529 11458 4.119862 TCTTCAAGACAACAGTGCACTAC 58.880 43.478 21.20 8.83 0.00 2.73
2536 11465 5.282055 TCACTCATCTTCAAGACAACAGT 57.718 39.130 0.00 0.00 0.00 3.55
2544 11473 4.936411 AGCAGTGAATCACTCATCTTCAAG 59.064 41.667 13.72 0.08 43.43 3.02
2718 11672 2.842320 GAGGCCGACTCAAAGTTCC 58.158 57.895 0.00 0.00 45.85 3.62
2944 11902 6.467677 TGCTATAACTTCTGAGCAAGTCTTT 58.532 36.000 0.00 0.00 41.78 2.52
2982 11940 1.709147 GCCGCGATGATCAAGTGCTT 61.709 55.000 8.23 0.00 0.00 3.91
3058 12017 4.217118 GCCATTATATTTGAGGCAGAGTGG 59.783 45.833 0.00 0.00 44.59 4.00
3059 12018 5.368256 GCCATTATATTTGAGGCAGAGTG 57.632 43.478 0.00 0.00 44.59 3.51
3098 12059 1.208052 TGAGTAGATGAAGCAGTGCCC 59.792 52.381 12.58 4.71 0.00 5.36
3260 12443 4.349048 AGGAGATTATGCTGCTTATGTCCA 59.651 41.667 19.33 0.00 32.16 4.02
3325 12508 7.335422 AGCAGAAAGAAATGGATGTACTACTTG 59.665 37.037 0.00 0.00 0.00 3.16
3328 12511 6.818644 TGAGCAGAAAGAAATGGATGTACTAC 59.181 38.462 0.00 0.00 0.00 2.73
3435 12618 4.216902 TCAGTGAAAGCATCAGGATTGTTG 59.783 41.667 0.00 0.00 39.19 3.33
3474 12657 5.353394 TGTGTATGATTACCTTGGAGGAC 57.647 43.478 0.07 0.00 37.67 3.85
3560 12753 9.357161 AGGTTACAAAACATGGATACTAAACAA 57.643 29.630 0.00 0.00 37.34 2.83
3578 12771 0.840617 TGACAGGGTGCAGGTTACAA 59.159 50.000 0.00 0.00 0.00 2.41
3579 12772 0.840617 TTGACAGGGTGCAGGTTACA 59.159 50.000 0.00 0.00 0.00 2.41
3620 12819 6.438763 AGTCTTTGGAATTTTTGCTTACGAG 58.561 36.000 0.00 0.00 0.00 4.18
3801 13006 2.555325 TCGGAAGTATCGATTATGCGGT 59.445 45.455 1.71 0.00 0.00 5.68
3835 13040 2.166829 TCATTTTTGTCCCCATGGTCG 58.833 47.619 11.73 0.00 0.00 4.79
3851 13056 5.235516 CCTTGATTCTTGCTGCTTTTCATT 58.764 37.500 0.00 0.00 0.00 2.57
3865 13070 3.428532 AGCAGATGTTTGCCTTGATTCT 58.571 40.909 0.00 0.00 45.18 2.40
3996 13229 9.855021 ACATATGTAGTTTGCTTAAATGAAACC 57.145 29.630 6.56 0.00 31.21 3.27
4049 13297 9.295825 TGTTATATAAAATCTGCCATACAAGGG 57.704 33.333 0.00 0.00 0.00 3.95
4093 13341 2.159114 GGTTGTCACTGGTGCACAAATT 60.159 45.455 20.43 0.00 34.75 1.82
4098 13346 2.185004 ATAGGTTGTCACTGGTGCAC 57.815 50.000 8.80 8.80 0.00 4.57
4172 13427 9.308000 ACCATTCAATAAAGAAGTTATGGTGAA 57.692 29.630 0.00 0.00 36.39 3.18
4173 13428 8.877864 ACCATTCAATAAAGAAGTTATGGTGA 57.122 30.769 0.00 0.00 36.39 4.02
4188 13464 7.345691 TCTCCTTAAATCTGCACCATTCAATA 58.654 34.615 0.00 0.00 0.00 1.90
4223 13499 3.250744 TCAATAGCGCGATAATGTAGCC 58.749 45.455 18.00 0.00 0.00 3.93
4476 13764 6.014925 TGGATTATCAGTTATGCGCCTAACTA 60.015 38.462 29.62 18.76 39.37 2.24
4477 13765 5.221641 TGGATTATCAGTTATGCGCCTAACT 60.222 40.000 26.28 26.28 41.50 2.24
4478 13766 4.994852 TGGATTATCAGTTATGCGCCTAAC 59.005 41.667 23.11 23.11 32.80 2.34
4479 13767 5.221641 ACTGGATTATCAGTTATGCGCCTAA 60.222 40.000 4.18 2.12 44.74 2.69
4480 13768 4.283467 ACTGGATTATCAGTTATGCGCCTA 59.717 41.667 4.18 0.00 44.74 3.93
4481 13769 3.071602 ACTGGATTATCAGTTATGCGCCT 59.928 43.478 4.18 0.00 44.74 5.52
4482 13770 3.403038 ACTGGATTATCAGTTATGCGCC 58.597 45.455 4.18 0.00 44.74 6.53
4483 13771 4.310769 AGACTGGATTATCAGTTATGCGC 58.689 43.478 0.00 0.00 46.76 6.09
4484 13772 7.148641 AGTAAGACTGGATTATCAGTTATGCG 58.851 38.462 0.00 0.00 46.76 4.73
4511 13807 4.334552 TGGAAGAAATTATGCACAGCTGA 58.665 39.130 23.35 0.00 0.00 4.26
4627 14099 3.798202 ACGGTATCATCAAGAGCTTTCC 58.202 45.455 0.00 0.00 0.00 3.13
4653 14125 0.804989 CTCTCAAAATGGCGTGGGAC 59.195 55.000 0.00 0.00 0.00 4.46
4722 14199 8.653338 GCATAGTGTTAGTCTAATGAAAACGAA 58.347 33.333 0.00 0.00 0.00 3.85
4811 14290 7.119699 TCAGTTATGAGTTAATTTCAGCCACTG 59.880 37.037 14.75 14.75 34.40 3.66
4816 14295 7.519002 ACGTTCAGTTATGAGTTAATTTCAGC 58.481 34.615 0.00 0.00 36.61 4.26
4931 14412 7.611770 TCACATCTAGCTTGTTACATTACAGT 58.388 34.615 0.00 0.00 0.00 3.55
4932 14413 8.654230 ATCACATCTAGCTTGTTACATTACAG 57.346 34.615 0.00 0.00 0.00 2.74
4937 14418 9.836864 TGAATAATCACATCTAGCTTGTTACAT 57.163 29.630 0.00 0.00 0.00 2.29
4938 14419 9.665719 TTGAATAATCACATCTAGCTTGTTACA 57.334 29.630 0.00 0.00 34.61 2.41
5089 14570 7.465989 CAAACAAAATCATCAATTGCATACCC 58.534 34.615 0.00 0.00 0.00 3.69
5160 14641 8.835467 TTGCGCTTATCAAAGTAAATTATCAC 57.165 30.769 9.73 0.00 34.99 3.06
5169 14650 7.843490 ATAGTTCTTTGCGCTTATCAAAGTA 57.157 32.000 9.73 0.36 46.27 2.24
5201 14682 1.063469 CAATTTAACCGCGCCTACTGG 59.937 52.381 0.00 0.00 0.00 4.00
5212 14693 6.018542 GCAAAAACACACACACAATTTAACC 58.981 36.000 0.00 0.00 0.00 2.85
5331 14862 5.462398 CGGTTGTATAGGAATTGTACAGCTC 59.538 44.000 0.00 0.00 35.75 4.09
5458 14990 7.448469 GGTGCACATTTATAATAGGTCCAATCT 59.552 37.037 20.43 0.00 0.00 2.40
5462 14994 6.007485 TGGTGCACATTTATAATAGGTCCA 57.993 37.500 20.43 0.00 0.00 4.02
5463 14995 5.048713 GCTGGTGCACATTTATAATAGGTCC 60.049 44.000 20.43 0.00 39.41 4.46
5477 15009 1.308047 CTTTGTACTGCTGGTGCACA 58.692 50.000 20.43 3.92 45.31 4.57
5480 15012 0.883833 ATGCTTTGTACTGCTGGTGC 59.116 50.000 0.00 0.00 40.20 5.01
5501 15033 6.613233 TCGATGCCGTTTTAATTATGTTTGT 58.387 32.000 0.00 0.00 37.05 2.83
5512 15044 4.112634 CTCAGAATCTCGATGCCGTTTTA 58.887 43.478 0.00 0.00 37.05 1.52
5517 15049 1.601663 GGTCTCAGAATCTCGATGCCG 60.602 57.143 0.00 0.00 37.07 5.69
5518 15050 1.410517 TGGTCTCAGAATCTCGATGCC 59.589 52.381 0.00 0.00 0.00 4.40
5519 15051 2.468831 GTGGTCTCAGAATCTCGATGC 58.531 52.381 0.00 0.00 0.00 3.91
5532 15064 0.106149 AGTGGTTGTTCGGTGGTCTC 59.894 55.000 0.00 0.00 0.00 3.36
5533 15065 0.179056 CAGTGGTTGTTCGGTGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
5552 15084 2.027625 CGACTCGTTCTGGGGCAAC 61.028 63.158 0.00 0.00 0.00 4.17
5553 15085 2.342279 CGACTCGTTCTGGGGCAA 59.658 61.111 0.00 0.00 0.00 4.52
5558 15090 2.504244 GTCGGCGACTCGTTCTGG 60.504 66.667 31.15 0.00 0.00 3.86
5560 15092 4.755614 GCGTCGGCGACTCGTTCT 62.756 66.667 33.90 0.00 41.33 3.01
5568 15101 3.396911 GACAGAGATGCGTCGGCGA 62.397 63.158 16.53 4.99 44.10 5.54
5578 15111 2.885388 ATCCAAGGGAGGACAGAGAT 57.115 50.000 0.00 0.00 41.30 2.75
5579 15112 2.649742 AATCCAAGGGAGGACAGAGA 57.350 50.000 0.00 0.00 41.30 3.10
5580 15113 4.410228 TGAATAATCCAAGGGAGGACAGAG 59.590 45.833 0.00 0.00 41.30 3.35
5581 15114 4.370776 TGAATAATCCAAGGGAGGACAGA 58.629 43.478 0.00 0.00 41.30 3.41
5582 15115 4.410228 TCTGAATAATCCAAGGGAGGACAG 59.590 45.833 0.00 0.00 41.30 3.51
5583 15116 4.370776 TCTGAATAATCCAAGGGAGGACA 58.629 43.478 0.00 0.00 41.30 4.02
5584 15117 4.202409 CCTCTGAATAATCCAAGGGAGGAC 60.202 50.000 0.00 0.00 41.30 3.85
5585 15118 3.976654 CCTCTGAATAATCCAAGGGAGGA 59.023 47.826 0.00 0.00 40.86 3.71
5586 15119 3.976654 TCCTCTGAATAATCCAAGGGAGG 59.023 47.826 0.00 0.00 40.05 4.30
5587 15120 5.636903 TTCCTCTGAATAATCCAAGGGAG 57.363 43.478 0.00 0.00 34.05 4.30
5588 15121 5.103940 CCTTTCCTCTGAATAATCCAAGGGA 60.104 44.000 0.00 0.00 35.55 4.20
5589 15122 5.136105 CCTTTCCTCTGAATAATCCAAGGG 58.864 45.833 0.00 0.00 30.75 3.95
5590 15123 4.582240 GCCTTTCCTCTGAATAATCCAAGG 59.418 45.833 0.00 0.00 0.00 3.61
5591 15124 5.444176 AGCCTTTCCTCTGAATAATCCAAG 58.556 41.667 0.00 0.00 0.00 3.61
5592 15125 5.440610 GAGCCTTTCCTCTGAATAATCCAA 58.559 41.667 0.00 0.00 0.00 3.53
5593 15126 4.443457 CGAGCCTTTCCTCTGAATAATCCA 60.443 45.833 0.00 0.00 0.00 3.41
5594 15127 4.061596 CGAGCCTTTCCTCTGAATAATCC 58.938 47.826 0.00 0.00 0.00 3.01
5595 15128 4.950050 TCGAGCCTTTCCTCTGAATAATC 58.050 43.478 0.00 0.00 0.00 1.75
5596 15129 5.070981 TCATCGAGCCTTTCCTCTGAATAAT 59.929 40.000 0.00 0.00 0.00 1.28
5597 15130 4.405680 TCATCGAGCCTTTCCTCTGAATAA 59.594 41.667 0.00 0.00 0.00 1.40
5598 15131 3.960755 TCATCGAGCCTTTCCTCTGAATA 59.039 43.478 0.00 0.00 0.00 1.75
5599 15132 2.768527 TCATCGAGCCTTTCCTCTGAAT 59.231 45.455 0.00 0.00 0.00 2.57
5600 15133 2.179427 TCATCGAGCCTTTCCTCTGAA 58.821 47.619 0.00 0.00 0.00 3.02
5601 15134 1.852633 TCATCGAGCCTTTCCTCTGA 58.147 50.000 0.00 0.00 0.00 3.27
5602 15135 2.680312 TTCATCGAGCCTTTCCTCTG 57.320 50.000 0.00 0.00 0.00 3.35
5603 15136 2.503356 ACATTCATCGAGCCTTTCCTCT 59.497 45.455 0.00 0.00 0.00 3.69
5604 15137 2.911484 ACATTCATCGAGCCTTTCCTC 58.089 47.619 0.00 0.00 0.00 3.71
5605 15138 3.356529 AACATTCATCGAGCCTTTCCT 57.643 42.857 0.00 0.00 0.00 3.36
5606 15139 4.082787 TCAAAACATTCATCGAGCCTTTCC 60.083 41.667 0.00 0.00 0.00 3.13
5607 15140 5.046910 TCAAAACATTCATCGAGCCTTTC 57.953 39.130 0.00 0.00 0.00 2.62
5608 15141 5.649782 ATCAAAACATTCATCGAGCCTTT 57.350 34.783 0.00 0.00 0.00 3.11
5609 15142 5.649782 AATCAAAACATTCATCGAGCCTT 57.350 34.783 0.00 0.00 0.00 4.35
5610 15143 5.649782 AAATCAAAACATTCATCGAGCCT 57.350 34.783 0.00 0.00 0.00 4.58
5611 15144 6.555315 ACTAAATCAAAACATTCATCGAGCC 58.445 36.000 0.00 0.00 0.00 4.70
5612 15145 8.368126 CAAACTAAATCAAAACATTCATCGAGC 58.632 33.333 0.00 0.00 0.00 5.03
5613 15146 9.611284 TCAAACTAAATCAAAACATTCATCGAG 57.389 29.630 0.00 0.00 0.00 4.04
5641 15174 8.973182 CAGAGAGGACTAAAATAAGGACTAACT 58.027 37.037 0.00 0.00 0.00 2.24
5642 15175 8.751242 ACAGAGAGGACTAAAATAAGGACTAAC 58.249 37.037 0.00 0.00 0.00 2.34
5643 15176 8.896722 ACAGAGAGGACTAAAATAAGGACTAA 57.103 34.615 0.00 0.00 0.00 2.24
5644 15177 7.282675 CGACAGAGAGGACTAAAATAAGGACTA 59.717 40.741 0.00 0.00 0.00 2.59
5645 15178 6.095720 CGACAGAGAGGACTAAAATAAGGACT 59.904 42.308 0.00 0.00 0.00 3.85
5646 15179 6.095160 TCGACAGAGAGGACTAAAATAAGGAC 59.905 42.308 0.00 0.00 0.00 3.85
5647 15180 6.185511 TCGACAGAGAGGACTAAAATAAGGA 58.814 40.000 0.00 0.00 0.00 3.36
5648 15181 6.452494 TCGACAGAGAGGACTAAAATAAGG 57.548 41.667 0.00 0.00 0.00 2.69
5649 15182 8.934507 AATTCGACAGAGAGGACTAAAATAAG 57.065 34.615 0.00 0.00 0.00 1.73
5650 15183 9.151471 CAAATTCGACAGAGAGGACTAAAATAA 57.849 33.333 0.00 0.00 0.00 1.40
5651 15184 7.764443 CCAAATTCGACAGAGAGGACTAAAATA 59.236 37.037 0.00 0.00 0.00 1.40
5652 15185 6.595716 CCAAATTCGACAGAGAGGACTAAAAT 59.404 38.462 0.00 0.00 0.00 1.82
5653 15186 5.932303 CCAAATTCGACAGAGAGGACTAAAA 59.068 40.000 0.00 0.00 0.00 1.52
5654 15187 5.011738 ACCAAATTCGACAGAGAGGACTAAA 59.988 40.000 0.00 0.00 0.00 1.85
5655 15188 4.527038 ACCAAATTCGACAGAGAGGACTAA 59.473 41.667 0.00 0.00 0.00 2.24
5656 15189 4.082190 CACCAAATTCGACAGAGAGGACTA 60.082 45.833 0.00 0.00 0.00 2.59
5657 15190 2.900546 ACCAAATTCGACAGAGAGGACT 59.099 45.455 0.00 0.00 0.00 3.85
5658 15191 2.996621 CACCAAATTCGACAGAGAGGAC 59.003 50.000 0.00 0.00 0.00 3.85
5659 15192 2.897326 TCACCAAATTCGACAGAGAGGA 59.103 45.455 0.00 0.00 0.00 3.71
5660 15193 3.319137 TCACCAAATTCGACAGAGAGG 57.681 47.619 0.00 0.00 0.00 3.69
5661 15194 5.673337 TTTTCACCAAATTCGACAGAGAG 57.327 39.130 0.00 0.00 0.00 3.20
5662 15195 5.588648 AGTTTTTCACCAAATTCGACAGAGA 59.411 36.000 0.00 0.00 0.00 3.10
5663 15196 5.821204 AGTTTTTCACCAAATTCGACAGAG 58.179 37.500 0.00 0.00 0.00 3.35
5664 15197 5.828299 AGTTTTTCACCAAATTCGACAGA 57.172 34.783 0.00 0.00 0.00 3.41
5665 15198 6.725246 ACTAGTTTTTCACCAAATTCGACAG 58.275 36.000 0.00 0.00 0.00 3.51
5666 15199 6.316640 TGACTAGTTTTTCACCAAATTCGACA 59.683 34.615 0.00 0.00 0.00 4.35
5667 15200 6.721321 TGACTAGTTTTTCACCAAATTCGAC 58.279 36.000 0.00 0.00 0.00 4.20
5668 15201 6.764085 TCTGACTAGTTTTTCACCAAATTCGA 59.236 34.615 0.00 0.00 0.00 3.71
5669 15202 6.851330 GTCTGACTAGTTTTTCACCAAATTCG 59.149 38.462 0.00 0.00 0.00 3.34
5670 15203 7.703328 TGTCTGACTAGTTTTTCACCAAATTC 58.297 34.615 9.51 0.00 0.00 2.17
5671 15204 7.639113 TGTCTGACTAGTTTTTCACCAAATT 57.361 32.000 9.51 0.00 0.00 1.82
5672 15205 7.122055 TGTTGTCTGACTAGTTTTTCACCAAAT 59.878 33.333 9.51 0.00 0.00 2.32
5673 15206 6.431543 TGTTGTCTGACTAGTTTTTCACCAAA 59.568 34.615 9.51 0.00 0.00 3.28
5674 15207 5.941058 TGTTGTCTGACTAGTTTTTCACCAA 59.059 36.000 9.51 0.00 0.00 3.67
5675 15208 5.492895 TGTTGTCTGACTAGTTTTTCACCA 58.507 37.500 9.51 0.00 0.00 4.17
5676 15209 6.431198 TTGTTGTCTGACTAGTTTTTCACC 57.569 37.500 9.51 0.00 0.00 4.02
5677 15210 8.911247 AAATTGTTGTCTGACTAGTTTTTCAC 57.089 30.769 9.51 0.00 0.00 3.18
5691 15224 9.143631 GCAGCATAAAAGATTAAATTGTTGTCT 57.856 29.630 0.00 0.00 0.00 3.41
5692 15225 8.924691 TGCAGCATAAAAGATTAAATTGTTGTC 58.075 29.630 0.00 0.00 0.00 3.18
5693 15226 8.830201 TGCAGCATAAAAGATTAAATTGTTGT 57.170 26.923 0.00 0.00 0.00 3.32
5696 15229 8.885722 CCAATGCAGCATAAAAGATTAAATTGT 58.114 29.630 8.75 0.00 0.00 2.71
5697 15230 8.339714 CCCAATGCAGCATAAAAGATTAAATTG 58.660 33.333 8.75 0.00 0.00 2.32
5698 15231 8.048514 ACCCAATGCAGCATAAAAGATTAAATT 58.951 29.630 8.75 0.00 0.00 1.82
5699 15232 7.567458 ACCCAATGCAGCATAAAAGATTAAAT 58.433 30.769 8.75 0.00 0.00 1.40
5700 15233 6.945218 ACCCAATGCAGCATAAAAGATTAAA 58.055 32.000 8.75 0.00 0.00 1.52
5701 15234 6.154192 TGACCCAATGCAGCATAAAAGATTAA 59.846 34.615 8.75 0.00 0.00 1.40
5702 15235 5.655974 TGACCCAATGCAGCATAAAAGATTA 59.344 36.000 8.75 0.00 0.00 1.75
5703 15236 4.467082 TGACCCAATGCAGCATAAAAGATT 59.533 37.500 8.75 0.00 0.00 2.40
5704 15237 4.025360 TGACCCAATGCAGCATAAAAGAT 58.975 39.130 8.75 0.00 0.00 2.40
5705 15238 3.429492 TGACCCAATGCAGCATAAAAGA 58.571 40.909 8.75 0.00 0.00 2.52
5706 15239 3.872511 TGACCCAATGCAGCATAAAAG 57.127 42.857 8.75 0.68 0.00 2.27
5707 15240 4.613925 TTTGACCCAATGCAGCATAAAA 57.386 36.364 8.75 0.85 0.00 1.52
5708 15241 4.822685 ATTTGACCCAATGCAGCATAAA 57.177 36.364 8.75 4.75 0.00 1.40
5709 15242 5.929058 TTATTTGACCCAATGCAGCATAA 57.071 34.783 8.75 0.00 0.00 1.90
5710 15243 6.482898 AATTATTTGACCCAATGCAGCATA 57.517 33.333 8.75 0.00 0.00 3.14
5711 15244 5.362105 AATTATTTGACCCAATGCAGCAT 57.638 34.783 0.52 0.52 0.00 3.79
5712 15245 4.822685 AATTATTTGACCCAATGCAGCA 57.177 36.364 0.00 0.00 0.00 4.41
5713 15246 5.178067 GCATAATTATTTGACCCAATGCAGC 59.822 40.000 0.00 0.00 38.61 5.25
5714 15247 5.403166 CGCATAATTATTTGACCCAATGCAG 59.597 40.000 0.00 0.00 38.66 4.41
5715 15248 5.163468 ACGCATAATTATTTGACCCAATGCA 60.163 36.000 0.00 0.00 38.66 3.96
5716 15249 5.175491 CACGCATAATTATTTGACCCAATGC 59.825 40.000 0.00 0.00 36.11 3.56
5717 15250 5.175491 GCACGCATAATTATTTGACCCAATG 59.825 40.000 0.00 0.00 0.00 2.82
5718 15251 5.163468 TGCACGCATAATTATTTGACCCAAT 60.163 36.000 0.00 0.00 0.00 3.16
5719 15252 4.158579 TGCACGCATAATTATTTGACCCAA 59.841 37.500 0.00 0.00 0.00 4.12
5720 15253 3.696548 TGCACGCATAATTATTTGACCCA 59.303 39.130 0.00 0.00 0.00 4.51
5721 15254 4.036262 TCTGCACGCATAATTATTTGACCC 59.964 41.667 0.00 0.00 0.00 4.46
5722 15255 5.168526 TCTGCACGCATAATTATTTGACC 57.831 39.130 0.00 0.00 0.00 4.02
5723 15256 8.781067 TTTATCTGCACGCATAATTATTTGAC 57.219 30.769 0.00 0.00 0.00 3.18
5724 15257 9.449550 CTTTTATCTGCACGCATAATTATTTGA 57.550 29.630 0.00 0.00 0.00 2.69
5725 15258 9.236691 ACTTTTATCTGCACGCATAATTATTTG 57.763 29.630 0.00 0.00 0.00 2.32
5726 15259 9.801873 AACTTTTATCTGCACGCATAATTATTT 57.198 25.926 0.00 0.00 0.00 1.40
5727 15260 9.801873 AAACTTTTATCTGCACGCATAATTATT 57.198 25.926 0.00 0.00 0.00 1.40
5728 15261 9.801873 AAAACTTTTATCTGCACGCATAATTAT 57.198 25.926 0.00 0.00 0.00 1.28
5729 15262 9.071221 CAAAACTTTTATCTGCACGCATAATTA 57.929 29.630 0.00 0.00 0.00 1.40
5730 15263 7.812191 TCAAAACTTTTATCTGCACGCATAATT 59.188 29.630 0.00 0.00 0.00 1.40
5731 15264 7.312154 TCAAAACTTTTATCTGCACGCATAAT 58.688 30.769 0.00 0.00 0.00 1.28
5732 15265 6.673106 TCAAAACTTTTATCTGCACGCATAA 58.327 32.000 0.00 0.00 0.00 1.90
5733 15266 6.247727 TCAAAACTTTTATCTGCACGCATA 57.752 33.333 0.00 0.00 0.00 3.14
5734 15267 5.119931 TCAAAACTTTTATCTGCACGCAT 57.880 34.783 0.00 0.00 0.00 4.73
5735 15268 4.560136 TCAAAACTTTTATCTGCACGCA 57.440 36.364 0.00 0.00 0.00 5.24
5736 15269 5.153513 TCATCAAAACTTTTATCTGCACGC 58.846 37.500 0.00 0.00 0.00 5.34
5737 15270 7.801547 ATTCATCAAAACTTTTATCTGCACG 57.198 32.000 0.00 0.00 0.00 5.34
5761 15294 9.174166 GCTAGATCCCTGTCAAGTAAAATAAAA 57.826 33.333 0.00 0.00 0.00 1.52
5762 15295 8.325787 TGCTAGATCCCTGTCAAGTAAAATAAA 58.674 33.333 0.00 0.00 0.00 1.40
5763 15296 7.857456 TGCTAGATCCCTGTCAAGTAAAATAA 58.143 34.615 0.00 0.00 0.00 1.40
5764 15297 7.344612 TCTGCTAGATCCCTGTCAAGTAAAATA 59.655 37.037 0.00 0.00 0.00 1.40
5765 15298 6.156949 TCTGCTAGATCCCTGTCAAGTAAAAT 59.843 38.462 0.00 0.00 0.00 1.82
5766 15299 5.483937 TCTGCTAGATCCCTGTCAAGTAAAA 59.516 40.000 0.00 0.00 0.00 1.52
5767 15300 5.023452 TCTGCTAGATCCCTGTCAAGTAAA 58.977 41.667 0.00 0.00 0.00 2.01
5768 15301 4.610333 TCTGCTAGATCCCTGTCAAGTAA 58.390 43.478 0.00 0.00 0.00 2.24
5769 15302 4.251103 TCTGCTAGATCCCTGTCAAGTA 57.749 45.455 0.00 0.00 0.00 2.24
5770 15303 3.107402 TCTGCTAGATCCCTGTCAAGT 57.893 47.619 0.00 0.00 0.00 3.16
5771 15304 3.196469 TGTTCTGCTAGATCCCTGTCAAG 59.804 47.826 0.00 0.00 0.00 3.02
5772 15305 3.055819 GTGTTCTGCTAGATCCCTGTCAA 60.056 47.826 0.00 0.00 0.00 3.18
5773 15306 2.497675 GTGTTCTGCTAGATCCCTGTCA 59.502 50.000 0.00 0.00 0.00 3.58
5774 15307 2.763448 AGTGTTCTGCTAGATCCCTGTC 59.237 50.000 0.00 0.00 0.00 3.51
5775 15308 2.763448 GAGTGTTCTGCTAGATCCCTGT 59.237 50.000 0.00 0.00 0.00 4.00
5776 15309 2.762887 TGAGTGTTCTGCTAGATCCCTG 59.237 50.000 0.00 0.00 0.00 4.45
5777 15310 3.107402 TGAGTGTTCTGCTAGATCCCT 57.893 47.619 0.00 0.00 0.00 4.20
5778 15311 4.414337 AATGAGTGTTCTGCTAGATCCC 57.586 45.455 0.00 0.00 0.00 3.85
5779 15312 5.988561 CCTAAATGAGTGTTCTGCTAGATCC 59.011 44.000 0.00 0.00 0.00 3.36
5780 15313 6.578023 ACCTAAATGAGTGTTCTGCTAGATC 58.422 40.000 0.00 0.00 0.00 2.75
5781 15314 6.552445 ACCTAAATGAGTGTTCTGCTAGAT 57.448 37.500 0.00 0.00 0.00 1.98
5782 15315 7.476540 TTACCTAAATGAGTGTTCTGCTAGA 57.523 36.000 0.00 0.00 0.00 2.43
5783 15316 7.064728 GGTTTACCTAAATGAGTGTTCTGCTAG 59.935 40.741 0.00 0.00 0.00 3.42
5784 15317 6.877322 GGTTTACCTAAATGAGTGTTCTGCTA 59.123 38.462 0.00 0.00 0.00 3.49
5785 15318 5.705905 GGTTTACCTAAATGAGTGTTCTGCT 59.294 40.000 0.00 0.00 0.00 4.24
5786 15319 5.472137 TGGTTTACCTAAATGAGTGTTCTGC 59.528 40.000 0.00 0.00 36.82 4.26
5787 15320 7.687941 ATGGTTTACCTAAATGAGTGTTCTG 57.312 36.000 0.00 0.00 36.82 3.02
5788 15321 7.942341 TCAATGGTTTACCTAAATGAGTGTTCT 59.058 33.333 0.00 0.00 36.82 3.01
5789 15322 8.106247 TCAATGGTTTACCTAAATGAGTGTTC 57.894 34.615 0.00 0.00 36.82 3.18
5790 15323 8.650143 ATCAATGGTTTACCTAAATGAGTGTT 57.350 30.769 0.00 0.00 36.82 3.32
5791 15324 8.650143 AATCAATGGTTTACCTAAATGAGTGT 57.350 30.769 0.00 0.00 36.82 3.55
5792 15325 9.573133 GAAATCAATGGTTTACCTAAATGAGTG 57.427 33.333 0.00 0.00 36.82 3.51
5793 15326 9.308000 TGAAATCAATGGTTTACCTAAATGAGT 57.692 29.630 0.00 0.00 36.82 3.41
5801 15334 9.308000 TGACTAAATGAAATCAATGGTTTACCT 57.692 29.630 0.00 0.00 36.82 3.08
5802 15335 9.353999 GTGACTAAATGAAATCAATGGTTTACC 57.646 33.333 0.00 0.00 0.00 2.85
5803 15336 9.906660 TGTGACTAAATGAAATCAATGGTTTAC 57.093 29.630 0.00 0.00 0.00 2.01
5804 15337 9.906660 GTGTGACTAAATGAAATCAATGGTTTA 57.093 29.630 0.00 0.00 0.00 2.01
5805 15338 8.641541 AGTGTGACTAAATGAAATCAATGGTTT 58.358 29.630 0.00 0.00 0.00 3.27
5806 15339 8.084073 CAGTGTGACTAAATGAAATCAATGGTT 58.916 33.333 0.00 0.00 0.00 3.67
5807 15340 7.231317 ACAGTGTGACTAAATGAAATCAATGGT 59.769 33.333 0.00 0.00 0.00 3.55
5808 15341 7.596494 ACAGTGTGACTAAATGAAATCAATGG 58.404 34.615 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.