Multiple sequence alignment - TraesCS1B01G463200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G463200 chr1B 100.000 2537 0 0 1 2537 675546575 675544039 0.000000e+00 4686.0
1 TraesCS1B01G463200 chr1B 76.900 1000 196 20 621 1603 675555222 675554241 3.710000e-148 534.0
2 TraesCS1B01G463200 chr1B 94.207 328 17 1 1 328 561638789 561639114 1.360000e-137 499.0
3 TraesCS1B01G463200 chr1B 93.976 332 17 2 1 332 613249018 613249346 1.360000e-137 499.0
4 TraesCS1B01G463200 chr1B 92.694 219 12 2 404 622 605270048 605270262 1.890000e-81 313.0
5 TraesCS1B01G463200 chr1B 92.035 226 9 2 404 621 605440152 605440376 2.450000e-80 309.0
6 TraesCS1B01G463200 chr1B 94.030 201 11 1 366 566 615700097 615699898 1.140000e-78 303.0
7 TraesCS1B01G463200 chr1B 91.556 225 10 2 404 620 605433740 605433517 4.100000e-78 302.0
8 TraesCS1B01G463200 chr1B 92.228 193 14 1 329 521 571700675 571700866 3.220000e-69 272.0
9 TraesCS1B01G463200 chr1B 79.149 235 27 16 2315 2537 675377561 675377337 2.630000e-30 143.0
10 TraesCS1B01G463200 chr1B 88.889 81 1 2 548 620 615699897 615699817 2.690000e-15 93.5
11 TraesCS1B01G463200 chr1D 92.906 1029 56 7 621 1639 485092927 485091906 0.000000e+00 1480.0
12 TraesCS1B01G463200 chr1D 90.379 634 48 10 1914 2537 485091567 485090937 0.000000e+00 821.0
13 TraesCS1B01G463200 chr1D 77.008 996 194 22 621 1602 485102797 485101823 2.870000e-149 538.0
14 TraesCS1B01G463200 chr1D 93.262 282 16 2 1638 1919 485091877 485091599 1.820000e-111 412.0
15 TraesCS1B01G463200 chr1D 84.444 270 22 10 366 626 296590210 296589952 5.420000e-62 248.0
16 TraesCS1B01G463200 chr1A 91.139 1027 74 8 621 1639 582361480 582360463 0.000000e+00 1376.0
17 TraesCS1B01G463200 chr1A 89.292 607 53 9 1940 2537 582360009 582359406 0.000000e+00 750.0
18 TraesCS1B01G463200 chr1A 77.186 995 194 19 621 1602 582415479 582414505 1.330000e-152 549.0
19 TraesCS1B01G463200 chr1A 92.116 241 13 4 1638 1873 582360434 582360195 4.040000e-88 335.0
20 TraesCS1B01G463200 chr1A 87.166 187 17 5 2351 2537 582413176 582412997 3.310000e-49 206.0
21 TraesCS1B01G463200 chr1A 83.133 166 16 7 2380 2537 582280212 582280051 9.460000e-30 141.0
22 TraesCS1B01G463200 chr1A 84.071 113 18 0 1489 1601 582281949 582281837 2.670000e-20 110.0
23 TraesCS1B01G463200 chr2B 96.012 326 12 1 4 329 787789253 787788929 1.730000e-146 529.0
24 TraesCS1B01G463200 chr2B 90.909 330 26 4 1 326 151461421 151461092 8.330000e-120 440.0
25 TraesCS1B01G463200 chr2B 95.522 67 3 0 2471 2537 94929404 94929470 9.600000e-20 108.0
26 TraesCS1B01G463200 chr2A 94.012 334 18 2 1 332 765191035 765191368 2.910000e-139 505.0
27 TraesCS1B01G463200 chr5B 93.578 327 21 0 1 327 244132257 244132583 2.930000e-134 488.0
28 TraesCS1B01G463200 chr4A 93.293 328 22 0 1 328 674455928 674456255 3.790000e-133 484.0
29 TraesCS1B01G463200 chr4D 92.378 328 18 5 12 336 370527333 370527010 6.390000e-126 460.0
30 TraesCS1B01G463200 chr6B 90.419 334 28 4 1 331 703960923 703960591 1.080000e-118 436.0
31 TraesCS1B01G463200 chr6B 95.122 82 2 1 329 410 660463529 660463608 7.370000e-26 128.0
32 TraesCS1B01G463200 chr6B 100.000 45 0 0 332 376 114127379 114127335 1.620000e-12 84.2
33 TraesCS1B01G463200 chr4B 92.478 226 8 2 404 621 7772731 7772955 5.270000e-82 315.0
34 TraesCS1B01G463200 chr7A 88.722 266 12 3 363 620 611335633 611335888 2.450000e-80 309.0
35 TraesCS1B01G463200 chr7A 90.090 222 12 3 363 584 611329941 611330152 1.920000e-71 279.0
36 TraesCS1B01G463200 chr2D 85.768 267 21 8 366 620 58803181 58802920 1.500000e-67 267.0
37 TraesCS1B01G463200 chr7B 100.000 32 0 0 591 622 376804145 376804114 2.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G463200 chr1B 675544039 675546575 2536 True 4686.000000 4686 100.000000 1 2537 1 chr1B.!!$R3 2536
1 TraesCS1B01G463200 chr1B 675554241 675555222 981 True 534.000000 534 76.900000 621 1603 1 chr1B.!!$R4 982
2 TraesCS1B01G463200 chr1D 485090937 485092927 1990 True 904.333333 1480 92.182333 621 2537 3 chr1D.!!$R3 1916
3 TraesCS1B01G463200 chr1D 485101823 485102797 974 True 538.000000 538 77.008000 621 1602 1 chr1D.!!$R2 981
4 TraesCS1B01G463200 chr1A 582359406 582361480 2074 True 820.333333 1376 90.849000 621 2537 3 chr1A.!!$R2 1916
5 TraesCS1B01G463200 chr1A 582412997 582415479 2482 True 377.500000 549 82.176000 621 2537 2 chr1A.!!$R3 1916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.035036 TTGTAATCGTGGCCGGTTGA 59.965 50.0 1.9 0.0 38.06 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2315 0.394565 ATGGCCACGGAGAGCTTATC 59.605 55.0 8.16 0.0 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.101448 GGAGCTGGGCGGATGTGT 62.101 66.667 0.00 0.00 0.00 3.72
18 19 2.045926 GAGCTGGGCGGATGTGTT 60.046 61.111 0.00 0.00 0.00 3.32
19 20 2.360350 AGCTGGGCGGATGTGTTG 60.360 61.111 0.00 0.00 0.00 3.33
20 21 3.443045 GCTGGGCGGATGTGTTGG 61.443 66.667 0.00 0.00 0.00 3.77
21 22 2.751436 CTGGGCGGATGTGTTGGG 60.751 66.667 0.00 0.00 0.00 4.12
22 23 3.567579 CTGGGCGGATGTGTTGGGT 62.568 63.158 0.00 0.00 0.00 4.51
23 24 2.750237 GGGCGGATGTGTTGGGTC 60.750 66.667 0.00 0.00 0.00 4.46
24 25 3.124921 GGCGGATGTGTTGGGTCG 61.125 66.667 0.00 0.00 0.00 4.79
25 26 3.124921 GCGGATGTGTTGGGTCGG 61.125 66.667 0.00 0.00 0.00 4.79
26 27 2.435938 CGGATGTGTTGGGTCGGG 60.436 66.667 0.00 0.00 0.00 5.14
27 28 2.045340 GGATGTGTTGGGTCGGGG 60.045 66.667 0.00 0.00 0.00 5.73
28 29 2.750237 GATGTGTTGGGTCGGGGC 60.750 66.667 0.00 0.00 0.00 5.80
29 30 3.256960 ATGTGTTGGGTCGGGGCT 61.257 61.111 0.00 0.00 0.00 5.19
30 31 3.567579 ATGTGTTGGGTCGGGGCTG 62.568 63.158 0.00 0.00 0.00 4.85
60 61 4.835927 CGATAGCGTTCCCTGCTT 57.164 55.556 0.00 0.00 43.71 3.91
61 62 2.594541 CGATAGCGTTCCCTGCTTC 58.405 57.895 0.00 0.00 43.71 3.86
62 63 1.209275 CGATAGCGTTCCCTGCTTCG 61.209 60.000 0.00 0.00 43.71 3.79
63 64 0.179108 GATAGCGTTCCCTGCTTCGT 60.179 55.000 0.00 0.00 43.71 3.85
64 65 0.179108 ATAGCGTTCCCTGCTTCGTC 60.179 55.000 0.00 0.00 43.71 4.20
65 66 2.537792 TAGCGTTCCCTGCTTCGTCG 62.538 60.000 0.00 0.00 43.71 5.12
66 67 2.049433 CGTTCCCTGCTTCGTCGT 60.049 61.111 0.00 0.00 0.00 4.34
67 68 1.663702 CGTTCCCTGCTTCGTCGTT 60.664 57.895 0.00 0.00 0.00 3.85
68 69 1.860078 GTTCCCTGCTTCGTCGTTG 59.140 57.895 0.00 0.00 0.00 4.10
69 70 1.301401 TTCCCTGCTTCGTCGTTGG 60.301 57.895 0.00 0.00 0.00 3.77
70 71 1.750341 TTCCCTGCTTCGTCGTTGGA 61.750 55.000 0.00 0.00 0.00 3.53
71 72 2.027625 CCCTGCTTCGTCGTTGGAC 61.028 63.158 0.00 0.00 39.89 4.02
72 73 1.300620 CCTGCTTCGTCGTTGGACA 60.301 57.895 0.00 0.00 43.61 4.02
73 74 0.670546 CCTGCTTCGTCGTTGGACAT 60.671 55.000 0.00 0.00 43.61 3.06
74 75 0.439985 CTGCTTCGTCGTTGGACATG 59.560 55.000 0.00 0.00 43.61 3.21
75 76 0.249699 TGCTTCGTCGTTGGACATGT 60.250 50.000 0.00 0.00 43.61 3.21
76 77 0.865769 GCTTCGTCGTTGGACATGTT 59.134 50.000 0.00 0.00 43.61 2.71
77 78 1.398451 GCTTCGTCGTTGGACATGTTG 60.398 52.381 0.00 0.00 43.61 3.33
78 79 2.131972 CTTCGTCGTTGGACATGTTGA 58.868 47.619 0.00 0.00 43.61 3.18
79 80 2.448926 TCGTCGTTGGACATGTTGAT 57.551 45.000 0.00 0.00 43.61 2.57
80 81 2.333926 TCGTCGTTGGACATGTTGATC 58.666 47.619 0.00 0.00 43.61 2.92
81 82 1.393539 CGTCGTTGGACATGTTGATCC 59.606 52.381 0.00 0.00 43.61 3.36
82 83 2.422597 GTCGTTGGACATGTTGATCCA 58.577 47.619 0.00 0.00 43.42 3.41
83 84 2.416547 GTCGTTGGACATGTTGATCCAG 59.583 50.000 0.00 0.00 45.66 3.86
84 85 2.038426 TCGTTGGACATGTTGATCCAGT 59.962 45.455 0.00 0.00 45.66 4.00
85 86 2.160219 CGTTGGACATGTTGATCCAGTG 59.840 50.000 0.00 0.00 45.66 3.66
86 87 1.825090 TGGACATGTTGATCCAGTGC 58.175 50.000 0.00 0.00 40.17 4.40
87 88 0.729116 GGACATGTTGATCCAGTGCG 59.271 55.000 0.00 0.00 34.87 5.34
88 89 0.729116 GACATGTTGATCCAGTGCGG 59.271 55.000 0.00 0.00 0.00 5.69
89 90 0.677731 ACATGTTGATCCAGTGCGGG 60.678 55.000 0.00 0.00 34.36 6.13
90 91 1.750399 ATGTTGATCCAGTGCGGGC 60.750 57.895 0.00 0.00 34.36 6.13
91 92 2.359850 GTTGATCCAGTGCGGGCA 60.360 61.111 0.00 0.00 34.36 5.36
92 93 1.750399 GTTGATCCAGTGCGGGCAT 60.750 57.895 0.00 0.00 34.36 4.40
93 94 1.001020 TTGATCCAGTGCGGGCATT 60.001 52.632 0.00 0.00 34.36 3.56
94 95 1.031571 TTGATCCAGTGCGGGCATTC 61.032 55.000 0.00 0.00 34.36 2.67
95 96 1.153086 GATCCAGTGCGGGCATTCT 60.153 57.895 0.00 0.00 34.36 2.40
96 97 0.106708 GATCCAGTGCGGGCATTCTA 59.893 55.000 0.00 0.00 34.36 2.10
97 98 0.179045 ATCCAGTGCGGGCATTCTAC 60.179 55.000 0.00 0.00 34.36 2.59
98 99 1.221840 CCAGTGCGGGCATTCTACT 59.778 57.895 0.00 0.00 0.00 2.57
99 100 0.392998 CCAGTGCGGGCATTCTACTT 60.393 55.000 0.00 0.00 0.00 2.24
100 101 1.009829 CAGTGCGGGCATTCTACTTC 58.990 55.000 0.00 0.00 0.00 3.01
101 102 0.905357 AGTGCGGGCATTCTACTTCT 59.095 50.000 0.00 0.00 0.00 2.85
102 103 1.279271 AGTGCGGGCATTCTACTTCTT 59.721 47.619 0.00 0.00 0.00 2.52
103 104 1.666189 GTGCGGGCATTCTACTTCTTC 59.334 52.381 0.00 0.00 0.00 2.87
104 105 1.300481 GCGGGCATTCTACTTCTTCC 58.700 55.000 0.00 0.00 0.00 3.46
105 106 1.406887 GCGGGCATTCTACTTCTTCCA 60.407 52.381 0.00 0.00 0.00 3.53
106 107 2.280628 CGGGCATTCTACTTCTTCCAC 58.719 52.381 0.00 0.00 0.00 4.02
107 108 2.280628 GGGCATTCTACTTCTTCCACG 58.719 52.381 0.00 0.00 0.00 4.94
108 109 2.280628 GGCATTCTACTTCTTCCACGG 58.719 52.381 0.00 0.00 0.00 4.94
109 110 1.666189 GCATTCTACTTCTTCCACGGC 59.334 52.381 0.00 0.00 0.00 5.68
110 111 1.927174 CATTCTACTTCTTCCACGGCG 59.073 52.381 4.80 4.80 0.00 6.46
111 112 0.389426 TTCTACTTCTTCCACGGCGC 60.389 55.000 6.90 0.00 0.00 6.53
112 113 1.215647 CTACTTCTTCCACGGCGCT 59.784 57.895 6.90 0.00 0.00 5.92
113 114 0.802607 CTACTTCTTCCACGGCGCTC 60.803 60.000 6.90 0.00 0.00 5.03
114 115 1.248785 TACTTCTTCCACGGCGCTCT 61.249 55.000 6.90 0.00 0.00 4.09
115 116 2.048222 TTCTTCCACGGCGCTCTG 60.048 61.111 6.90 2.19 0.00 3.35
116 117 2.771763 CTTCTTCCACGGCGCTCTGT 62.772 60.000 6.90 0.12 0.00 3.41
117 118 2.357517 CTTCCACGGCGCTCTGTT 60.358 61.111 6.90 0.00 0.00 3.16
118 119 2.357034 TTCCACGGCGCTCTGTTC 60.357 61.111 6.90 0.00 0.00 3.18
119 120 4.717629 TCCACGGCGCTCTGTTCG 62.718 66.667 6.90 3.16 0.00 3.95
126 127 2.765785 CGCTCTGTTCGCGTTGAG 59.234 61.111 5.77 10.62 45.13 3.02
127 128 2.720758 CGCTCTGTTCGCGTTGAGG 61.721 63.158 5.77 1.24 45.13 3.86
128 129 1.372997 GCTCTGTTCGCGTTGAGGA 60.373 57.895 5.77 0.00 0.00 3.71
129 130 1.618640 GCTCTGTTCGCGTTGAGGAC 61.619 60.000 5.77 0.00 0.00 3.85
139 140 1.260206 CGTTGAGGACGTCTTCATCG 58.740 55.000 32.56 32.56 46.49 3.84
140 141 0.992802 GTTGAGGACGTCTTCATCGC 59.007 55.000 28.21 18.04 37.89 4.58
141 142 0.108804 TTGAGGACGTCTTCATCGCC 60.109 55.000 28.21 4.31 37.89 5.54
142 143 1.586564 GAGGACGTCTTCATCGCCG 60.587 63.158 21.55 0.00 32.79 6.46
143 144 1.989966 GAGGACGTCTTCATCGCCGA 61.990 60.000 21.55 0.00 32.79 5.54
144 145 1.586564 GGACGTCTTCATCGCCGAG 60.587 63.158 16.46 0.00 0.00 4.63
145 146 2.202623 ACGTCTTCATCGCCGAGC 60.203 61.111 0.00 0.00 0.00 5.03
157 158 3.764466 CCGAGCGGTGCTTCTCCT 61.764 66.667 0.00 0.00 39.88 3.69
158 159 2.507992 CGAGCGGTGCTTCTCCTG 60.508 66.667 0.00 0.00 39.88 3.86
159 160 2.659610 GAGCGGTGCTTCTCCTGT 59.340 61.111 0.00 0.00 39.88 4.00
160 161 1.004440 GAGCGGTGCTTCTCCTGTT 60.004 57.895 0.00 0.00 39.88 3.16
161 162 1.294659 GAGCGGTGCTTCTCCTGTTG 61.295 60.000 0.00 0.00 39.88 3.33
162 163 1.301716 GCGGTGCTTCTCCTGTTGA 60.302 57.895 0.00 0.00 0.00 3.18
163 164 0.674895 GCGGTGCTTCTCCTGTTGAT 60.675 55.000 0.00 0.00 0.00 2.57
164 165 1.363744 CGGTGCTTCTCCTGTTGATC 58.636 55.000 0.00 0.00 0.00 2.92
165 166 1.066573 CGGTGCTTCTCCTGTTGATCT 60.067 52.381 0.00 0.00 0.00 2.75
166 167 2.613977 CGGTGCTTCTCCTGTTGATCTT 60.614 50.000 0.00 0.00 0.00 2.40
167 168 3.416156 GGTGCTTCTCCTGTTGATCTTT 58.584 45.455 0.00 0.00 0.00 2.52
168 169 3.823304 GGTGCTTCTCCTGTTGATCTTTT 59.177 43.478 0.00 0.00 0.00 2.27
169 170 5.003804 GGTGCTTCTCCTGTTGATCTTTTA 58.996 41.667 0.00 0.00 0.00 1.52
170 171 5.123027 GGTGCTTCTCCTGTTGATCTTTTAG 59.877 44.000 0.00 0.00 0.00 1.85
171 172 4.697352 TGCTTCTCCTGTTGATCTTTTAGC 59.303 41.667 0.00 0.00 0.00 3.09
172 173 4.940654 GCTTCTCCTGTTGATCTTTTAGCT 59.059 41.667 0.00 0.00 0.00 3.32
173 174 5.414144 GCTTCTCCTGTTGATCTTTTAGCTT 59.586 40.000 0.00 0.00 0.00 3.74
174 175 6.622462 GCTTCTCCTGTTGATCTTTTAGCTTG 60.622 42.308 0.00 0.00 0.00 4.01
175 176 5.248640 TCTCCTGTTGATCTTTTAGCTTGG 58.751 41.667 0.00 0.00 0.00 3.61
176 177 3.758554 TCCTGTTGATCTTTTAGCTTGGC 59.241 43.478 0.00 0.00 0.00 4.52
177 178 3.426695 CCTGTTGATCTTTTAGCTTGGCG 60.427 47.826 0.00 0.00 0.00 5.69
178 179 3.146066 TGTTGATCTTTTAGCTTGGCGT 58.854 40.909 0.00 0.00 0.00 5.68
179 180 3.058293 TGTTGATCTTTTAGCTTGGCGTG 60.058 43.478 0.00 0.00 0.00 5.34
180 181 2.083774 TGATCTTTTAGCTTGGCGTGG 58.916 47.619 0.00 0.00 0.00 4.94
181 182 2.084546 GATCTTTTAGCTTGGCGTGGT 58.915 47.619 0.00 0.00 0.00 4.16
182 183 1.234821 TCTTTTAGCTTGGCGTGGTG 58.765 50.000 0.00 0.00 0.00 4.17
183 184 0.240945 CTTTTAGCTTGGCGTGGTGG 59.759 55.000 0.00 0.00 0.00 4.61
184 185 0.179015 TTTTAGCTTGGCGTGGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
185 186 0.605319 TTTAGCTTGGCGTGGTGGAG 60.605 55.000 0.00 0.00 0.00 3.86
186 187 2.463589 TTAGCTTGGCGTGGTGGAGG 62.464 60.000 0.00 0.00 0.00 4.30
188 189 4.335647 CTTGGCGTGGTGGAGGCT 62.336 66.667 0.00 0.00 35.67 4.58
189 190 3.850098 CTTGGCGTGGTGGAGGCTT 62.850 63.158 0.00 0.00 35.67 4.35
190 191 4.641645 TGGCGTGGTGGAGGCTTG 62.642 66.667 0.00 0.00 35.67 4.01
191 192 4.643387 GGCGTGGTGGAGGCTTGT 62.643 66.667 0.00 0.00 35.67 3.16
192 193 3.357079 GCGTGGTGGAGGCTTGTG 61.357 66.667 0.00 0.00 32.41 3.33
193 194 2.425592 CGTGGTGGAGGCTTGTGA 59.574 61.111 0.00 0.00 0.00 3.58
194 195 1.669115 CGTGGTGGAGGCTTGTGAG 60.669 63.158 0.00 0.00 0.00 3.51
204 205 2.334307 GCTTGTGAGCTGCTTTCCA 58.666 52.632 2.53 0.00 45.65 3.53
205 206 0.670162 GCTTGTGAGCTGCTTTCCAA 59.330 50.000 2.53 6.52 45.65 3.53
206 207 1.601412 GCTTGTGAGCTGCTTTCCAAC 60.601 52.381 2.53 0.00 45.65 3.77
207 208 0.662619 TTGTGAGCTGCTTTCCAACG 59.337 50.000 2.53 0.00 0.00 4.10
208 209 1.081840 GTGAGCTGCTTTCCAACGC 60.082 57.895 2.53 0.00 0.00 4.84
209 210 2.260869 TGAGCTGCTTTCCAACGCC 61.261 57.895 2.53 0.00 0.00 5.68
210 211 1.968540 GAGCTGCTTTCCAACGCCT 60.969 57.895 2.53 0.00 0.00 5.52
211 212 1.518903 GAGCTGCTTTCCAACGCCTT 61.519 55.000 2.53 0.00 0.00 4.35
212 213 1.109323 AGCTGCTTTCCAACGCCTTT 61.109 50.000 0.00 0.00 0.00 3.11
213 214 0.940991 GCTGCTTTCCAACGCCTTTG 60.941 55.000 0.00 0.00 34.63 2.77
214 215 0.385390 CTGCTTTCCAACGCCTTTGT 59.615 50.000 0.00 0.00 32.71 2.83
215 216 1.606668 CTGCTTTCCAACGCCTTTGTA 59.393 47.619 0.00 0.00 32.71 2.41
216 217 2.228822 CTGCTTTCCAACGCCTTTGTAT 59.771 45.455 0.00 0.00 32.71 2.29
217 218 2.227865 TGCTTTCCAACGCCTTTGTATC 59.772 45.455 0.00 0.00 32.71 2.24
218 219 2.488153 GCTTTCCAACGCCTTTGTATCT 59.512 45.455 0.00 0.00 32.71 1.98
219 220 3.057526 GCTTTCCAACGCCTTTGTATCTT 60.058 43.478 0.00 0.00 32.71 2.40
220 221 4.475944 CTTTCCAACGCCTTTGTATCTTG 58.524 43.478 0.00 0.00 32.71 3.02
221 222 1.810151 TCCAACGCCTTTGTATCTTGC 59.190 47.619 0.00 0.00 32.71 4.01
222 223 1.135402 CCAACGCCTTTGTATCTTGCC 60.135 52.381 0.00 0.00 32.71 4.52
223 224 0.802494 AACGCCTTTGTATCTTGCCG 59.198 50.000 0.00 0.00 0.00 5.69
224 225 0.321298 ACGCCTTTGTATCTTGCCGT 60.321 50.000 0.00 0.00 0.00 5.68
225 226 0.802494 CGCCTTTGTATCTTGCCGTT 59.198 50.000 0.00 0.00 0.00 4.44
226 227 1.199097 CGCCTTTGTATCTTGCCGTTT 59.801 47.619 0.00 0.00 0.00 3.60
227 228 2.351350 CGCCTTTGTATCTTGCCGTTTT 60.351 45.455 0.00 0.00 0.00 2.43
228 229 3.242518 GCCTTTGTATCTTGCCGTTTTC 58.757 45.455 0.00 0.00 0.00 2.29
229 230 3.057526 GCCTTTGTATCTTGCCGTTTTCT 60.058 43.478 0.00 0.00 0.00 2.52
230 231 4.558697 GCCTTTGTATCTTGCCGTTTTCTT 60.559 41.667 0.00 0.00 0.00 2.52
231 232 5.528870 CCTTTGTATCTTGCCGTTTTCTTT 58.471 37.500 0.00 0.00 0.00 2.52
232 233 5.983118 CCTTTGTATCTTGCCGTTTTCTTTT 59.017 36.000 0.00 0.00 0.00 2.27
233 234 6.143919 CCTTTGTATCTTGCCGTTTTCTTTTC 59.856 38.462 0.00 0.00 0.00 2.29
234 235 6.385649 TTGTATCTTGCCGTTTTCTTTTCT 57.614 33.333 0.00 0.00 0.00 2.52
235 236 6.385649 TGTATCTTGCCGTTTTCTTTTCTT 57.614 33.333 0.00 0.00 0.00 2.52
236 237 6.801575 TGTATCTTGCCGTTTTCTTTTCTTT 58.198 32.000 0.00 0.00 0.00 2.52
237 238 6.915843 TGTATCTTGCCGTTTTCTTTTCTTTC 59.084 34.615 0.00 0.00 0.00 2.62
238 239 5.576447 TCTTGCCGTTTTCTTTTCTTTCT 57.424 34.783 0.00 0.00 0.00 2.52
239 240 5.961272 TCTTGCCGTTTTCTTTTCTTTCTT 58.039 33.333 0.00 0.00 0.00 2.52
240 241 5.804979 TCTTGCCGTTTTCTTTTCTTTCTTG 59.195 36.000 0.00 0.00 0.00 3.02
241 242 5.066968 TGCCGTTTTCTTTTCTTTCTTGT 57.933 34.783 0.00 0.00 0.00 3.16
242 243 4.862018 TGCCGTTTTCTTTTCTTTCTTGTG 59.138 37.500 0.00 0.00 0.00 3.33
243 244 4.259810 GCCGTTTTCTTTTCTTTCTTGTGC 60.260 41.667 0.00 0.00 0.00 4.57
244 245 5.102313 CCGTTTTCTTTTCTTTCTTGTGCT 58.898 37.500 0.00 0.00 0.00 4.40
245 246 5.230097 CCGTTTTCTTTTCTTTCTTGTGCTC 59.770 40.000 0.00 0.00 0.00 4.26
246 247 5.053025 CGTTTTCTTTTCTTTCTTGTGCTCG 60.053 40.000 0.00 0.00 0.00 5.03
247 248 5.560966 TTTCTTTTCTTTCTTGTGCTCGT 57.439 34.783 0.00 0.00 0.00 4.18
248 249 5.560966 TTCTTTTCTTTCTTGTGCTCGTT 57.439 34.783 0.00 0.00 0.00 3.85
249 250 5.156804 TCTTTTCTTTCTTGTGCTCGTTC 57.843 39.130 0.00 0.00 0.00 3.95
250 251 3.963383 TTTCTTTCTTGTGCTCGTTCC 57.037 42.857 0.00 0.00 0.00 3.62
251 252 1.497991 TCTTTCTTGTGCTCGTTCCG 58.502 50.000 0.00 0.00 0.00 4.30
252 253 1.067974 TCTTTCTTGTGCTCGTTCCGA 59.932 47.619 0.00 0.00 0.00 4.55
264 265 3.287312 TCGTTCCGAGTTTGTAATCGT 57.713 42.857 0.00 0.00 37.23 3.73
265 266 2.981805 TCGTTCCGAGTTTGTAATCGTG 59.018 45.455 0.00 0.00 37.23 4.35
266 267 2.091588 CGTTCCGAGTTTGTAATCGTGG 59.908 50.000 0.00 0.00 37.23 4.94
267 268 1.717194 TCCGAGTTTGTAATCGTGGC 58.283 50.000 0.00 0.00 37.23 5.01
268 269 0.725117 CCGAGTTTGTAATCGTGGCC 59.275 55.000 0.00 0.00 37.23 5.36
269 270 0.368907 CGAGTTTGTAATCGTGGCCG 59.631 55.000 0.00 0.00 34.30 6.13
270 271 0.725117 GAGTTTGTAATCGTGGCCGG 59.275 55.000 0.00 0.00 33.95 6.13
271 272 0.035739 AGTTTGTAATCGTGGCCGGT 59.964 50.000 1.90 0.00 33.95 5.28
272 273 0.876399 GTTTGTAATCGTGGCCGGTT 59.124 50.000 1.90 0.00 41.16 4.44
273 274 0.875728 TTTGTAATCGTGGCCGGTTG 59.124 50.000 1.90 0.00 38.06 3.77
274 275 0.035036 TTGTAATCGTGGCCGGTTGA 59.965 50.000 1.90 0.00 38.06 3.18
275 276 0.250793 TGTAATCGTGGCCGGTTGAT 59.749 50.000 1.90 0.00 38.06 2.57
276 277 0.655733 GTAATCGTGGCCGGTTGATG 59.344 55.000 1.90 0.00 38.06 3.07
277 278 0.462937 TAATCGTGGCCGGTTGATGG 60.463 55.000 1.90 0.00 38.06 3.51
287 288 3.866883 CCGGTTGATGGCTTTGTTAAT 57.133 42.857 0.00 0.00 0.00 1.40
288 289 4.186856 CCGGTTGATGGCTTTGTTAATT 57.813 40.909 0.00 0.00 0.00 1.40
289 290 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
290 291 4.321601 CCGGTTGATGGCTTTGTTAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
291 292 5.226396 CGGTTGATGGCTTTGTTAATTCAA 58.774 37.500 0.00 0.00 0.00 2.69
292 293 5.694006 CGGTTGATGGCTTTGTTAATTCAAA 59.306 36.000 0.00 0.00 36.18 2.69
299 300 2.734276 TTGTTAATTCAAAGCCGGGC 57.266 45.000 12.11 12.11 0.00 6.13
300 301 1.917872 TGTTAATTCAAAGCCGGGCT 58.082 45.000 17.69 17.69 42.56 5.19
301 302 1.816224 TGTTAATTCAAAGCCGGGCTC 59.184 47.619 24.08 6.82 38.25 4.70
302 303 2.092323 GTTAATTCAAAGCCGGGCTCT 58.908 47.619 24.08 5.15 38.25 4.09
303 304 2.492088 GTTAATTCAAAGCCGGGCTCTT 59.508 45.455 24.08 15.43 38.25 2.85
304 305 1.632589 AATTCAAAGCCGGGCTCTTT 58.367 45.000 24.08 11.39 38.25 2.52
305 306 1.632589 ATTCAAAGCCGGGCTCTTTT 58.367 45.000 24.08 10.57 38.25 2.27
306 307 1.408969 TTCAAAGCCGGGCTCTTTTT 58.591 45.000 24.08 10.16 38.25 1.94
307 308 0.673437 TCAAAGCCGGGCTCTTTTTG 59.327 50.000 24.08 21.74 38.25 2.44
308 309 0.673437 CAAAGCCGGGCTCTTTTTGA 59.327 50.000 24.08 0.00 38.25 2.69
309 310 0.961753 AAAGCCGGGCTCTTTTTGAG 59.038 50.000 24.08 0.00 45.33 3.02
319 320 3.544356 CTCTTTTTGAGCCTTCGTTCC 57.456 47.619 0.00 0.00 35.84 3.62
320 321 2.878406 CTCTTTTTGAGCCTTCGTTCCA 59.122 45.455 0.00 0.00 35.84 3.53
321 322 3.283751 TCTTTTTGAGCCTTCGTTCCAA 58.716 40.909 0.00 0.00 0.00 3.53
322 323 3.697045 TCTTTTTGAGCCTTCGTTCCAAA 59.303 39.130 0.00 0.00 0.00 3.28
323 324 4.158764 TCTTTTTGAGCCTTCGTTCCAAAA 59.841 37.500 0.00 0.00 35.66 2.44
324 325 4.457834 TTTTGAGCCTTCGTTCCAAAAA 57.542 36.364 0.00 0.00 34.87 1.94
346 347 5.644977 AAAAAGATAGTGCTAACCTTGGC 57.355 39.130 0.00 0.00 34.98 4.52
347 348 4.576330 AAAGATAGTGCTAACCTTGGCT 57.424 40.909 0.00 0.00 35.49 4.75
348 349 4.576330 AAGATAGTGCTAACCTTGGCTT 57.424 40.909 0.00 0.00 35.49 4.35
349 350 4.576330 AGATAGTGCTAACCTTGGCTTT 57.424 40.909 0.00 0.00 35.49 3.51
350 351 4.265073 AGATAGTGCTAACCTTGGCTTTG 58.735 43.478 0.00 0.00 35.49 2.77
351 352 0.961753 AGTGCTAACCTTGGCTTTGC 59.038 50.000 0.00 0.00 35.49 3.68
352 353 0.961753 GTGCTAACCTTGGCTTTGCT 59.038 50.000 0.00 0.00 35.49 3.91
353 354 1.068264 GTGCTAACCTTGGCTTTGCTC 60.068 52.381 0.00 0.00 35.49 4.26
354 355 0.528017 GCTAACCTTGGCTTTGCTCC 59.472 55.000 0.00 0.00 0.00 4.70
355 356 1.888391 GCTAACCTTGGCTTTGCTCCT 60.888 52.381 0.00 0.00 0.00 3.69
356 357 2.087646 CTAACCTTGGCTTTGCTCCTC 58.912 52.381 0.00 0.00 0.00 3.71
357 358 0.890996 AACCTTGGCTTTGCTCCTCG 60.891 55.000 0.00 0.00 0.00 4.63
358 359 2.042831 CCTTGGCTTTGCTCCTCGG 61.043 63.158 0.00 0.00 0.00 4.63
359 360 2.672996 TTGGCTTTGCTCCTCGGC 60.673 61.111 0.00 0.00 0.00 5.54
360 361 3.196207 TTGGCTTTGCTCCTCGGCT 62.196 57.895 0.00 0.00 0.00 5.52
361 362 3.130160 GGCTTTGCTCCTCGGCTG 61.130 66.667 0.00 0.00 0.00 4.85
362 363 3.130160 GCTTTGCTCCTCGGCTGG 61.130 66.667 0.00 0.00 0.00 4.85
363 364 2.665000 CTTTGCTCCTCGGCTGGA 59.335 61.111 0.00 0.00 34.52 3.86
369 370 1.439644 CTCCTCGGCTGGAGTTAGC 59.560 63.158 13.20 0.00 46.33 3.09
378 379 3.283259 GCTGGAGTTAGCCCATTACTT 57.717 47.619 0.00 0.00 37.73 2.24
379 380 4.417426 GCTGGAGTTAGCCCATTACTTA 57.583 45.455 0.00 0.00 37.73 2.24
380 381 4.777463 GCTGGAGTTAGCCCATTACTTAA 58.223 43.478 0.00 0.00 37.73 1.85
381 382 5.190677 GCTGGAGTTAGCCCATTACTTAAA 58.809 41.667 0.00 0.00 37.73 1.52
382 383 5.828328 GCTGGAGTTAGCCCATTACTTAAAT 59.172 40.000 0.00 0.00 37.73 1.40
383 384 6.996282 GCTGGAGTTAGCCCATTACTTAAATA 59.004 38.462 0.00 0.00 37.73 1.40
384 385 7.665974 GCTGGAGTTAGCCCATTACTTAAATAT 59.334 37.037 0.00 0.00 37.73 1.28
385 386 9.574516 CTGGAGTTAGCCCATTACTTAAATATT 57.425 33.333 0.00 0.00 32.49 1.28
391 392 9.715121 TTAGCCCATTACTTAAATATTAGTCGG 57.285 33.333 0.00 0.00 0.00 4.79
392 393 7.970102 AGCCCATTACTTAAATATTAGTCGGA 58.030 34.615 0.00 0.00 0.00 4.55
393 394 7.876582 AGCCCATTACTTAAATATTAGTCGGAC 59.123 37.037 0.00 0.00 0.00 4.79
394 395 7.876582 GCCCATTACTTAAATATTAGTCGGACT 59.123 37.037 15.95 15.95 0.00 3.85
395 396 9.420551 CCCATTACTTAAATATTAGTCGGACTC 57.579 37.037 15.05 0.00 0.00 3.36
428 429 6.785337 AAATTAACTAGCCCATTGTTACCC 57.215 37.500 0.00 0.00 30.34 3.69
429 430 2.820728 AACTAGCCCATTGTTACCCC 57.179 50.000 0.00 0.00 0.00 4.95
430 431 1.981259 ACTAGCCCATTGTTACCCCT 58.019 50.000 0.00 0.00 0.00 4.79
431 432 3.139606 ACTAGCCCATTGTTACCCCTA 57.860 47.619 0.00 0.00 0.00 3.53
432 433 3.466836 ACTAGCCCATTGTTACCCCTAA 58.533 45.455 0.00 0.00 0.00 2.69
433 434 3.853784 ACTAGCCCATTGTTACCCCTAAA 59.146 43.478 0.00 0.00 0.00 1.85
434 435 3.837399 AGCCCATTGTTACCCCTAAAA 57.163 42.857 0.00 0.00 0.00 1.52
435 436 4.134933 AGCCCATTGTTACCCCTAAAAA 57.865 40.909 0.00 0.00 0.00 1.94
436 437 4.694512 AGCCCATTGTTACCCCTAAAAAT 58.305 39.130 0.00 0.00 0.00 1.82
437 438 5.844601 AGCCCATTGTTACCCCTAAAAATA 58.155 37.500 0.00 0.00 0.00 1.40
438 439 6.265304 AGCCCATTGTTACCCCTAAAAATAA 58.735 36.000 0.00 0.00 0.00 1.40
439 440 6.382859 AGCCCATTGTTACCCCTAAAAATAAG 59.617 38.462 0.00 0.00 0.00 1.73
440 441 6.578944 CCCATTGTTACCCCTAAAAATAAGC 58.421 40.000 0.00 0.00 0.00 3.09
441 442 6.382859 CCCATTGTTACCCCTAAAAATAAGCT 59.617 38.462 0.00 0.00 0.00 3.74
442 443 7.562088 CCCATTGTTACCCCTAAAAATAAGCTA 59.438 37.037 0.00 0.00 0.00 3.32
443 444 8.973182 CCATTGTTACCCCTAAAAATAAGCTAA 58.027 33.333 0.00 0.00 0.00 3.09
444 445 9.797556 CATTGTTACCCCTAAAAATAAGCTAAC 57.202 33.333 0.00 0.00 0.00 2.34
445 446 7.943079 TGTTACCCCTAAAAATAAGCTAACC 57.057 36.000 0.00 0.00 0.00 2.85
446 447 6.891361 TGTTACCCCTAAAAATAAGCTAACCC 59.109 38.462 0.00 0.00 0.00 4.11
447 448 5.539669 ACCCCTAAAAATAAGCTAACCCA 57.460 39.130 0.00 0.00 0.00 4.51
448 449 6.099994 ACCCCTAAAAATAAGCTAACCCAT 57.900 37.500 0.00 0.00 0.00 4.00
449 450 6.508477 ACCCCTAAAAATAAGCTAACCCATT 58.492 36.000 0.00 0.00 0.00 3.16
450 451 6.382859 ACCCCTAAAAATAAGCTAACCCATTG 59.617 38.462 0.00 0.00 0.00 2.82
451 452 6.382859 CCCCTAAAAATAAGCTAACCCATTGT 59.617 38.462 0.00 0.00 0.00 2.71
452 453 7.093068 CCCCTAAAAATAAGCTAACCCATTGTT 60.093 37.037 0.00 0.00 41.11 2.83
453 454 8.318412 CCCTAAAAATAAGCTAACCCATTGTTT 58.682 33.333 0.00 0.00 38.42 2.83
458 459 9.869757 AAAATAAGCTAACCCATTGTTTATCAC 57.130 29.630 0.00 0.00 38.42 3.06
459 460 8.588290 AATAAGCTAACCCATTGTTTATCACA 57.412 30.769 0.00 0.00 38.42 3.58
460 461 8.766994 ATAAGCTAACCCATTGTTTATCACAT 57.233 30.769 0.00 0.00 38.42 3.21
461 462 9.860650 ATAAGCTAACCCATTGTTTATCACATA 57.139 29.630 0.00 0.00 38.42 2.29
462 463 7.568199 AGCTAACCCATTGTTTATCACATAC 57.432 36.000 0.00 0.00 38.42 2.39
463 464 6.260050 AGCTAACCCATTGTTTATCACATACG 59.740 38.462 0.00 0.00 38.42 3.06
464 465 6.037830 GCTAACCCATTGTTTATCACATACGT 59.962 38.462 0.00 0.00 38.42 3.57
465 466 5.811399 ACCCATTGTTTATCACATACGTG 57.189 39.130 0.00 0.00 45.08 4.49
466 467 4.095782 ACCCATTGTTTATCACATACGTGC 59.904 41.667 0.00 0.00 43.28 5.34
467 468 4.095632 CCCATTGTTTATCACATACGTGCA 59.904 41.667 0.00 0.00 43.28 4.57
468 469 5.221028 CCCATTGTTTATCACATACGTGCAT 60.221 40.000 0.00 0.00 43.28 3.96
469 470 6.017523 CCCATTGTTTATCACATACGTGCATA 60.018 38.462 0.00 0.00 43.28 3.14
470 471 6.850823 CCATTGTTTATCACATACGTGCATAC 59.149 38.462 0.00 0.00 43.28 2.39
471 472 6.026873 TTGTTTATCACATACGTGCATACG 57.973 37.500 0.00 0.00 45.10 3.06
479 480 2.577059 CGTGCATACGTGGACCCT 59.423 61.111 0.00 0.00 43.03 4.34
480 481 1.079405 CGTGCATACGTGGACCCTT 60.079 57.895 0.00 0.00 43.03 3.95
481 482 0.672401 CGTGCATACGTGGACCCTTT 60.672 55.000 0.00 0.00 43.03 3.11
482 483 1.530323 GTGCATACGTGGACCCTTTT 58.470 50.000 0.00 0.00 40.43 2.27
483 484 1.883926 GTGCATACGTGGACCCTTTTT 59.116 47.619 0.00 0.00 40.43 1.94
484 485 1.883275 TGCATACGTGGACCCTTTTTG 59.117 47.619 0.00 0.00 0.00 2.44
485 486 2.156098 GCATACGTGGACCCTTTTTGA 58.844 47.619 0.00 0.00 0.00 2.69
486 487 2.554893 GCATACGTGGACCCTTTTTGAA 59.445 45.455 0.00 0.00 0.00 2.69
487 488 3.192633 GCATACGTGGACCCTTTTTGAAT 59.807 43.478 0.00 0.00 0.00 2.57
488 489 4.674362 GCATACGTGGACCCTTTTTGAATC 60.674 45.833 0.00 0.00 0.00 2.52
489 490 2.938838 ACGTGGACCCTTTTTGAATCA 58.061 42.857 0.00 0.00 0.00 2.57
490 491 3.292460 ACGTGGACCCTTTTTGAATCAA 58.708 40.909 0.00 0.00 0.00 2.57
491 492 3.895041 ACGTGGACCCTTTTTGAATCAAT 59.105 39.130 0.00 0.00 0.00 2.57
492 493 4.022329 ACGTGGACCCTTTTTGAATCAATC 60.022 41.667 0.00 0.00 0.00 2.67
493 494 4.218417 CGTGGACCCTTTTTGAATCAATCT 59.782 41.667 0.00 0.00 0.00 2.40
494 495 5.414454 CGTGGACCCTTTTTGAATCAATCTA 59.586 40.000 0.00 0.00 0.00 1.98
495 496 6.095440 CGTGGACCCTTTTTGAATCAATCTAT 59.905 38.462 0.00 0.00 0.00 1.98
496 497 7.260603 GTGGACCCTTTTTGAATCAATCTATG 58.739 38.462 0.00 0.00 0.00 2.23
497 498 6.127366 TGGACCCTTTTTGAATCAATCTATGC 60.127 38.462 0.00 0.00 0.00 3.14
498 499 6.127366 GGACCCTTTTTGAATCAATCTATGCA 60.127 38.462 0.00 0.00 0.00 3.96
499 500 7.418254 GGACCCTTTTTGAATCAATCTATGCAT 60.418 37.037 3.79 3.79 0.00 3.96
500 501 7.270047 ACCCTTTTTGAATCAATCTATGCATG 58.730 34.615 10.16 0.00 0.00 4.06
501 502 6.202188 CCCTTTTTGAATCAATCTATGCATGC 59.798 38.462 11.82 11.82 0.00 4.06
502 503 6.759356 CCTTTTTGAATCAATCTATGCATGCA 59.241 34.615 25.04 25.04 0.00 3.96
503 504 7.254319 CCTTTTTGAATCAATCTATGCATGCAC 60.254 37.037 25.37 6.60 0.00 4.57
504 505 6.459670 TTTGAATCAATCTATGCATGCACT 57.540 33.333 25.37 14.70 0.00 4.40
505 506 7.571080 TTTGAATCAATCTATGCATGCACTA 57.429 32.000 25.37 15.05 0.00 2.74
506 507 6.796705 TGAATCAATCTATGCATGCACTAG 57.203 37.500 25.37 22.83 0.00 2.57
507 508 6.293698 TGAATCAATCTATGCATGCACTAGT 58.706 36.000 25.37 9.96 0.00 2.57
508 509 6.204108 TGAATCAATCTATGCATGCACTAGTG 59.796 38.462 25.37 19.48 0.00 2.74
522 523 3.798202 CACTAGTGCTCAGGTAAATCCC 58.202 50.000 10.54 0.00 36.75 3.85
523 524 2.431057 ACTAGTGCTCAGGTAAATCCCG 59.569 50.000 0.00 0.00 36.75 5.14
524 525 1.568504 AGTGCTCAGGTAAATCCCGA 58.431 50.000 0.00 0.00 36.75 5.14
525 526 1.207329 AGTGCTCAGGTAAATCCCGAC 59.793 52.381 0.00 0.00 36.75 4.79
526 527 1.207329 GTGCTCAGGTAAATCCCGACT 59.793 52.381 0.00 0.00 36.75 4.18
527 528 2.429610 GTGCTCAGGTAAATCCCGACTA 59.570 50.000 0.00 0.00 36.75 2.59
528 529 2.693591 TGCTCAGGTAAATCCCGACTAG 59.306 50.000 0.00 0.00 36.75 2.57
529 530 2.546162 GCTCAGGTAAATCCCGACTAGC 60.546 54.545 0.00 0.00 36.75 3.42
530 531 2.693591 CTCAGGTAAATCCCGACTAGCA 59.306 50.000 0.00 0.00 36.75 3.49
531 532 2.693591 TCAGGTAAATCCCGACTAGCAG 59.306 50.000 0.00 0.00 36.75 4.24
532 533 2.431057 CAGGTAAATCCCGACTAGCAGT 59.569 50.000 0.00 0.00 36.75 4.40
533 534 3.635373 CAGGTAAATCCCGACTAGCAGTA 59.365 47.826 0.00 0.00 36.75 2.74
534 535 4.098960 CAGGTAAATCCCGACTAGCAGTAA 59.901 45.833 0.00 0.00 36.75 2.24
535 536 4.713321 AGGTAAATCCCGACTAGCAGTAAA 59.287 41.667 0.00 0.00 36.75 2.01
536 537 5.188359 AGGTAAATCCCGACTAGCAGTAAAA 59.812 40.000 0.00 0.00 36.75 1.52
537 538 6.053650 GGTAAATCCCGACTAGCAGTAAAAT 58.946 40.000 0.00 0.00 0.00 1.82
538 539 6.202379 GGTAAATCCCGACTAGCAGTAAAATC 59.798 42.308 0.00 0.00 0.00 2.17
539 540 5.615925 AATCCCGACTAGCAGTAAAATCT 57.384 39.130 0.00 0.00 0.00 2.40
540 541 4.386867 TCCCGACTAGCAGTAAAATCTG 57.613 45.455 0.00 0.00 38.35 2.90
541 542 3.767673 TCCCGACTAGCAGTAAAATCTGT 59.232 43.478 0.00 0.00 37.70 3.41
542 543 4.113354 CCCGACTAGCAGTAAAATCTGTC 58.887 47.826 0.00 0.00 37.70 3.51
543 544 4.113354 CCGACTAGCAGTAAAATCTGTCC 58.887 47.826 0.00 0.00 37.70 4.02
544 545 4.381612 CCGACTAGCAGTAAAATCTGTCCA 60.382 45.833 0.00 0.00 37.70 4.02
545 546 5.352284 CGACTAGCAGTAAAATCTGTCCAT 58.648 41.667 0.00 0.00 37.70 3.41
546 547 5.812642 CGACTAGCAGTAAAATCTGTCCATT 59.187 40.000 0.00 0.00 37.70 3.16
547 548 6.237942 CGACTAGCAGTAAAATCTGTCCATTG 60.238 42.308 0.00 0.00 37.70 2.82
548 549 6.476378 ACTAGCAGTAAAATCTGTCCATTGT 58.524 36.000 0.00 0.00 37.70 2.71
549 550 6.942576 ACTAGCAGTAAAATCTGTCCATTGTT 59.057 34.615 0.00 0.00 37.70 2.83
550 551 6.655078 AGCAGTAAAATCTGTCCATTGTTT 57.345 33.333 0.00 0.00 37.70 2.83
551 552 7.759489 AGCAGTAAAATCTGTCCATTGTTTA 57.241 32.000 0.00 0.00 37.70 2.01
552 553 8.353423 AGCAGTAAAATCTGTCCATTGTTTAT 57.647 30.769 0.00 0.00 37.70 1.40
553 554 8.462016 AGCAGTAAAATCTGTCCATTGTTTATC 58.538 33.333 0.00 0.00 37.70 1.75
554 555 8.243426 GCAGTAAAATCTGTCCATTGTTTATCA 58.757 33.333 0.00 0.00 37.70 2.15
557 558 9.023967 GTAAAATCTGTCCATTGTTTATCATGC 57.976 33.333 0.00 0.00 0.00 4.06
558 559 6.778834 AATCTGTCCATTGTTTATCATGCA 57.221 33.333 0.00 0.00 0.00 3.96
559 560 6.971726 ATCTGTCCATTGTTTATCATGCAT 57.028 33.333 0.00 0.00 0.00 3.96
560 561 6.139048 TCTGTCCATTGTTTATCATGCATG 57.861 37.500 21.07 21.07 0.00 4.06
561 562 5.653330 TCTGTCCATTGTTTATCATGCATGT 59.347 36.000 25.43 15.34 0.00 3.21
562 563 6.827762 TCTGTCCATTGTTTATCATGCATGTA 59.172 34.615 25.43 14.37 0.00 2.29
563 564 6.794374 TGTCCATTGTTTATCATGCATGTAC 58.206 36.000 25.43 18.19 0.00 2.90
564 565 6.376581 TGTCCATTGTTTATCATGCATGTACA 59.623 34.615 25.43 20.19 0.00 2.90
565 566 7.094032 TGTCCATTGTTTATCATGCATGTACAA 60.094 33.333 25.43 25.62 0.00 2.41
566 567 7.922278 GTCCATTGTTTATCATGCATGTACAAT 59.078 33.333 26.92 26.92 0.00 2.71
567 568 7.921745 TCCATTGTTTATCATGCATGTACAATG 59.078 33.333 35.08 35.08 40.58 2.82
568 569 7.707464 CCATTGTTTATCATGCATGTACAATGT 59.293 33.333 36.34 24.01 39.80 2.71
569 570 8.748582 CATTGTTTATCATGCATGTACAATGTC 58.251 33.333 34.52 21.00 37.90 3.06
570 571 7.628769 TGTTTATCATGCATGTACAATGTCT 57.371 32.000 25.43 4.21 0.00 3.41
571 572 7.696755 TGTTTATCATGCATGTACAATGTCTC 58.303 34.615 25.43 8.26 0.00 3.36
572 573 7.336427 TGTTTATCATGCATGTACAATGTCTCA 59.664 33.333 25.43 10.36 0.00 3.27
573 574 5.746307 ATCATGCATGTACAATGTCTCAC 57.254 39.130 25.43 0.00 0.00 3.51
574 575 4.577875 TCATGCATGTACAATGTCTCACA 58.422 39.130 25.43 0.00 0.00 3.58
575 576 4.632688 TCATGCATGTACAATGTCTCACAG 59.367 41.667 25.43 0.00 0.00 3.66
576 577 2.743664 TGCATGTACAATGTCTCACAGC 59.256 45.455 0.00 0.55 0.00 4.40
577 578 2.096496 GCATGTACAATGTCTCACAGCC 59.904 50.000 0.00 0.00 0.00 4.85
578 579 3.337358 CATGTACAATGTCTCACAGCCA 58.663 45.455 0.00 0.00 0.00 4.75
579 580 3.483808 TGTACAATGTCTCACAGCCAA 57.516 42.857 0.00 0.00 0.00 4.52
580 581 3.138304 TGTACAATGTCTCACAGCCAAC 58.862 45.455 0.00 0.00 0.00 3.77
581 582 1.229428 ACAATGTCTCACAGCCAACG 58.771 50.000 0.00 0.00 0.00 4.10
582 583 1.202639 ACAATGTCTCACAGCCAACGA 60.203 47.619 0.00 0.00 0.00 3.85
583 584 1.462283 CAATGTCTCACAGCCAACGAG 59.538 52.381 0.00 0.00 0.00 4.18
584 585 0.671781 ATGTCTCACAGCCAACGAGC 60.672 55.000 0.00 0.00 0.00 5.03
585 586 2.029844 GTCTCACAGCCAACGAGCC 61.030 63.158 0.00 0.00 0.00 4.70
586 587 2.743928 CTCACAGCCAACGAGCCC 60.744 66.667 0.00 0.00 0.00 5.19
587 588 4.680237 TCACAGCCAACGAGCCCG 62.680 66.667 0.00 0.00 42.50 6.13
826 833 2.114411 GGTGCCCCGGAACAAGAA 59.886 61.111 0.73 0.00 0.00 2.52
874 881 4.570663 CTTCGACCCCGCCGCTAG 62.571 72.222 0.00 0.00 35.37 3.42
935 942 4.410400 CGGGGTTCAGAGGGTGGC 62.410 72.222 0.00 0.00 0.00 5.01
1038 1045 2.213499 GGATGCGTCTACTTCAATGGG 58.787 52.381 5.77 0.00 0.00 4.00
1164 1180 0.168128 GTATGCCGAACACCAGCAAC 59.832 55.000 0.00 0.00 40.46 4.17
1165 1181 0.958382 TATGCCGAACACCAGCAACC 60.958 55.000 0.00 0.00 40.46 3.77
1219 1235 0.247145 CACCGCGCGTGTAGAAAATC 60.247 55.000 29.95 0.00 37.73 2.17
1238 1254 0.734889 CAAGGTAAATGCCGGCTCTG 59.265 55.000 29.70 8.92 0.00 3.35
1265 1281 2.288518 GGGTTCTCGAGGATCATGCTAC 60.289 54.545 13.56 0.00 33.17 3.58
1269 1285 1.179174 TCGAGGATCATGCTACCGGG 61.179 60.000 6.32 0.00 33.17 5.73
1283 1299 4.087892 CGGGCTGTGGACCCTGAG 62.088 72.222 0.00 0.00 46.04 3.35
1303 1319 1.740025 GGTGTACTGCCAGCATTCTTC 59.260 52.381 0.00 0.00 33.13 2.87
1375 1391 2.548707 GCGATCCATCCAGAGTGCAATA 60.549 50.000 0.00 0.00 0.00 1.90
1376 1392 3.732212 CGATCCATCCAGAGTGCAATAA 58.268 45.455 0.00 0.00 0.00 1.40
1377 1393 4.321718 CGATCCATCCAGAGTGCAATAAT 58.678 43.478 0.00 0.00 0.00 1.28
1403 1419 0.960364 TTCCTTCAAGATGTGGCGCC 60.960 55.000 22.73 22.73 0.00 6.53
1441 1460 2.432874 TCCTACAATATGGACACCGGTG 59.567 50.000 32.83 32.83 0.00 4.94
1450 1469 0.673644 GGACACCGGTGAACTGGATG 60.674 60.000 40.21 11.70 45.36 3.51
1499 1518 2.412325 CGCAAAGATTTCACCCGTACAC 60.412 50.000 0.00 0.00 0.00 2.90
1564 1583 0.730494 GCAGCTTCACATTTGCCGAC 60.730 55.000 0.00 0.00 0.00 4.79
1751 1849 6.072728 TGTTATTTGAAACGGATGTCTCCTTG 60.073 38.462 0.00 0.00 39.65 3.61
1774 1929 8.726870 TTGGTAGTGATTTAATAGTACCTTGC 57.273 34.615 14.79 0.00 41.42 4.01
1811 1974 9.734620 CAACTTCTCTGAATTTTTGTACATTCA 57.265 29.630 8.83 8.83 37.12 2.57
1844 2007 1.203052 CAGTGAAATCTGCCCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
1876 2039 5.348986 CAATACCAATACGTGCTAGTCTGT 58.651 41.667 0.00 0.00 0.00 3.41
1886 2049 3.494626 CGTGCTAGTCTGTGAACACAATT 59.505 43.478 8.93 1.09 41.33 2.32
1887 2050 4.684242 CGTGCTAGTCTGTGAACACAATTA 59.316 41.667 8.93 2.07 41.33 1.40
1891 2054 8.883731 GTGCTAGTCTGTGAACACAATTATATT 58.116 33.333 8.93 0.00 41.33 1.28
1942 2224 3.817084 CACAACTCATTCTGTGACACCAT 59.183 43.478 2.45 0.00 44.68 3.55
1995 2284 5.539574 ACAGGTTCAATTTCATCACCATCAA 59.460 36.000 0.00 0.00 0.00 2.57
1997 2286 6.533723 CAGGTTCAATTTCATCACCATCAATG 59.466 38.462 0.00 0.00 0.00 2.82
2001 2290 9.421806 GTTCAATTTCATCACCATCAATGTTAA 57.578 29.630 0.00 0.00 0.00 2.01
2004 2293 8.649841 CAATTTCATCACCATCAATGTTAACAC 58.350 33.333 11.22 0.00 0.00 3.32
2038 2327 3.388308 CATGTTCTGGATAAGCTCTCCG 58.612 50.000 9.95 6.02 35.41 4.63
2047 2336 0.618458 TAAGCTCTCCGTGGCCATTT 59.382 50.000 9.72 0.00 0.00 2.32
2057 2346 1.539388 CGTGGCCATTTTAGTTCTGCA 59.461 47.619 9.72 0.00 0.00 4.41
2077 2366 6.381133 TCTGCAATGAATTCCTGACTAGACTA 59.619 38.462 2.27 0.00 0.00 2.59
2078 2367 6.577103 TGCAATGAATTCCTGACTAGACTAG 58.423 40.000 8.00 8.00 0.00 2.57
2119 2475 4.217550 TGGCTTGTAAACTTTGATACAGCC 59.782 41.667 14.17 14.17 41.50 4.85
2167 2523 6.260714 TGCTTGTCATTGAATAGCGATAACAT 59.739 34.615 13.48 0.00 34.65 2.71
2312 2673 5.269189 TGTCTATATGTGAGGTTCAGGTCA 58.731 41.667 0.00 0.00 0.00 4.02
2396 3189 6.332630 CCAGCTAATTTTACAAACTGGATGG 58.667 40.000 0.00 0.00 44.80 3.51
2425 3218 7.448748 TCTTCCTGGCTATTTAACTGAAAAC 57.551 36.000 0.00 0.00 0.00 2.43
2426 3219 7.001674 TCTTCCTGGCTATTTAACTGAAAACA 58.998 34.615 0.00 0.00 0.00 2.83
2499 3294 7.632861 TCAAACCAGAAAGATCTATCATCCAA 58.367 34.615 0.00 0.00 33.50 3.53
2511 3306 8.547173 AGATCTATCATCCAAGAAGTTGACTTT 58.453 33.333 0.00 0.00 36.11 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.628646 AACACATCCGCCCAGCTCC 62.629 63.158 0.00 0.00 0.00 4.70
1 2 2.045926 AACACATCCGCCCAGCTC 60.046 61.111 0.00 0.00 0.00 4.09
2 3 2.360350 CAACACATCCGCCCAGCT 60.360 61.111 0.00 0.00 0.00 4.24
3 4 3.443045 CCAACACATCCGCCCAGC 61.443 66.667 0.00 0.00 0.00 4.85
4 5 2.751436 CCCAACACATCCGCCCAG 60.751 66.667 0.00 0.00 0.00 4.45
5 6 3.561120 GACCCAACACATCCGCCCA 62.561 63.158 0.00 0.00 0.00 5.36
6 7 2.750237 GACCCAACACATCCGCCC 60.750 66.667 0.00 0.00 0.00 6.13
7 8 3.124921 CGACCCAACACATCCGCC 61.125 66.667 0.00 0.00 0.00 6.13
8 9 3.124921 CCGACCCAACACATCCGC 61.125 66.667 0.00 0.00 0.00 5.54
9 10 2.435938 CCCGACCCAACACATCCG 60.436 66.667 0.00 0.00 0.00 4.18
10 11 2.045340 CCCCGACCCAACACATCC 60.045 66.667 0.00 0.00 0.00 3.51
11 12 2.750237 GCCCCGACCCAACACATC 60.750 66.667 0.00 0.00 0.00 3.06
12 13 3.256960 AGCCCCGACCCAACACAT 61.257 61.111 0.00 0.00 0.00 3.21
13 14 4.263572 CAGCCCCGACCCAACACA 62.264 66.667 0.00 0.00 0.00 3.72
36 37 0.944788 GGGAACGCTATCGCCTAAGC 60.945 60.000 0.00 0.00 39.84 3.09
37 38 0.674534 AGGGAACGCTATCGCCTAAG 59.325 55.000 0.00 0.00 39.84 2.18
38 39 0.387929 CAGGGAACGCTATCGCCTAA 59.612 55.000 0.00 0.00 39.84 2.69
39 40 2.038690 CAGGGAACGCTATCGCCTA 58.961 57.895 0.00 0.00 39.84 3.93
40 41 2.815308 CAGGGAACGCTATCGCCT 59.185 61.111 0.00 0.00 39.84 5.52
41 42 2.925162 AAGCAGGGAACGCTATCGCC 62.925 60.000 0.00 0.00 38.83 5.54
42 43 1.491505 GAAGCAGGGAACGCTATCGC 61.492 60.000 0.00 0.00 38.83 4.58
43 44 1.209275 CGAAGCAGGGAACGCTATCG 61.209 60.000 0.00 0.00 38.83 2.92
44 45 0.179108 ACGAAGCAGGGAACGCTATC 60.179 55.000 0.00 0.00 38.83 2.08
45 46 0.179108 GACGAAGCAGGGAACGCTAT 60.179 55.000 0.00 0.00 38.83 2.97
46 47 1.214589 GACGAAGCAGGGAACGCTA 59.785 57.895 0.00 0.00 38.83 4.26
47 48 2.048127 GACGAAGCAGGGAACGCT 60.048 61.111 0.00 0.00 40.90 5.07
48 49 3.479269 CGACGAAGCAGGGAACGC 61.479 66.667 0.00 0.00 0.00 4.84
49 50 1.663702 AACGACGAAGCAGGGAACG 60.664 57.895 0.00 0.00 0.00 3.95
50 51 1.566018 CCAACGACGAAGCAGGGAAC 61.566 60.000 0.00 0.00 0.00 3.62
51 52 1.301401 CCAACGACGAAGCAGGGAA 60.301 57.895 0.00 0.00 0.00 3.97
52 53 2.204461 TCCAACGACGAAGCAGGGA 61.204 57.895 0.00 0.00 0.00 4.20
53 54 2.027625 GTCCAACGACGAAGCAGGG 61.028 63.158 0.00 0.00 0.00 4.45
54 55 0.670546 ATGTCCAACGACGAAGCAGG 60.671 55.000 0.00 0.00 42.37 4.85
55 56 0.439985 CATGTCCAACGACGAAGCAG 59.560 55.000 0.00 0.00 42.37 4.24
56 57 0.249699 ACATGTCCAACGACGAAGCA 60.250 50.000 0.00 0.00 42.37 3.91
57 58 0.865769 AACATGTCCAACGACGAAGC 59.134 50.000 0.00 0.00 42.37 3.86
58 59 2.131972 TCAACATGTCCAACGACGAAG 58.868 47.619 0.00 0.00 42.37 3.79
59 60 2.226602 TCAACATGTCCAACGACGAA 57.773 45.000 0.00 0.00 42.37 3.85
60 61 2.333926 GATCAACATGTCCAACGACGA 58.666 47.619 0.00 0.00 42.37 4.20
61 62 1.393539 GGATCAACATGTCCAACGACG 59.606 52.381 0.00 0.00 42.37 5.12
62 63 2.416547 CTGGATCAACATGTCCAACGAC 59.583 50.000 0.00 0.00 43.52 4.34
63 64 2.038426 ACTGGATCAACATGTCCAACGA 59.962 45.455 0.00 0.00 43.52 3.85
64 65 2.160219 CACTGGATCAACATGTCCAACG 59.840 50.000 0.00 0.00 43.52 4.10
65 66 2.095059 GCACTGGATCAACATGTCCAAC 60.095 50.000 0.00 0.00 43.52 3.77
66 67 2.161855 GCACTGGATCAACATGTCCAA 58.838 47.619 0.00 0.00 43.52 3.53
67 68 1.825090 GCACTGGATCAACATGTCCA 58.175 50.000 0.00 0.66 42.03 4.02
68 69 0.729116 CGCACTGGATCAACATGTCC 59.271 55.000 0.00 0.00 35.02 4.02
69 70 0.729116 CCGCACTGGATCAACATGTC 59.271 55.000 0.00 0.00 42.00 3.06
70 71 0.677731 CCCGCACTGGATCAACATGT 60.678 55.000 0.00 0.00 42.00 3.21
71 72 1.996786 GCCCGCACTGGATCAACATG 61.997 60.000 0.00 0.00 42.00 3.21
72 73 1.750399 GCCCGCACTGGATCAACAT 60.750 57.895 0.00 0.00 42.00 2.71
73 74 2.359850 GCCCGCACTGGATCAACA 60.360 61.111 0.00 0.00 42.00 3.33
74 75 1.315257 AATGCCCGCACTGGATCAAC 61.315 55.000 0.00 0.00 42.00 3.18
75 76 1.001020 AATGCCCGCACTGGATCAA 60.001 52.632 0.00 0.00 42.00 2.57
76 77 1.451927 GAATGCCCGCACTGGATCA 60.452 57.895 0.00 0.00 42.00 2.92
77 78 0.106708 TAGAATGCCCGCACTGGATC 59.893 55.000 0.00 0.00 42.00 3.36
78 79 0.179045 GTAGAATGCCCGCACTGGAT 60.179 55.000 0.00 0.00 42.00 3.41
79 80 1.220749 GTAGAATGCCCGCACTGGA 59.779 57.895 0.00 0.00 42.00 3.86
80 81 0.392998 AAGTAGAATGCCCGCACTGG 60.393 55.000 0.00 0.00 37.55 4.00
81 82 1.009829 GAAGTAGAATGCCCGCACTG 58.990 55.000 0.00 0.00 0.00 3.66
82 83 0.905357 AGAAGTAGAATGCCCGCACT 59.095 50.000 0.00 0.00 0.00 4.40
83 84 1.666189 GAAGAAGTAGAATGCCCGCAC 59.334 52.381 0.00 0.00 0.00 5.34
84 85 1.406887 GGAAGAAGTAGAATGCCCGCA 60.407 52.381 0.00 0.00 0.00 5.69
85 86 1.300481 GGAAGAAGTAGAATGCCCGC 58.700 55.000 0.00 0.00 0.00 6.13
86 87 2.280628 GTGGAAGAAGTAGAATGCCCG 58.719 52.381 0.00 0.00 0.00 6.13
87 88 2.280628 CGTGGAAGAAGTAGAATGCCC 58.719 52.381 0.00 0.00 0.00 5.36
88 89 2.280628 CCGTGGAAGAAGTAGAATGCC 58.719 52.381 0.00 0.00 0.00 4.40
89 90 1.666189 GCCGTGGAAGAAGTAGAATGC 59.334 52.381 0.00 0.00 0.00 3.56
90 91 1.927174 CGCCGTGGAAGAAGTAGAATG 59.073 52.381 0.00 0.00 0.00 2.67
91 92 1.739371 GCGCCGTGGAAGAAGTAGAAT 60.739 52.381 0.00 0.00 0.00 2.40
92 93 0.389426 GCGCCGTGGAAGAAGTAGAA 60.389 55.000 0.00 0.00 0.00 2.10
93 94 1.214589 GCGCCGTGGAAGAAGTAGA 59.785 57.895 0.00 0.00 0.00 2.59
94 95 0.802607 GAGCGCCGTGGAAGAAGTAG 60.803 60.000 2.29 0.00 0.00 2.57
95 96 1.214589 GAGCGCCGTGGAAGAAGTA 59.785 57.895 2.29 0.00 0.00 2.24
96 97 2.048127 GAGCGCCGTGGAAGAAGT 60.048 61.111 2.29 0.00 0.00 3.01
97 98 2.097038 CAGAGCGCCGTGGAAGAAG 61.097 63.158 2.29 0.00 0.00 2.85
98 99 2.048222 CAGAGCGCCGTGGAAGAA 60.048 61.111 2.29 0.00 0.00 2.52
99 100 2.765250 GAACAGAGCGCCGTGGAAGA 62.765 60.000 2.29 0.00 0.00 2.87
100 101 2.357517 AACAGAGCGCCGTGGAAG 60.358 61.111 2.29 0.00 0.00 3.46
101 102 2.357034 GAACAGAGCGCCGTGGAA 60.357 61.111 2.29 0.00 0.00 3.53
102 103 4.717629 CGAACAGAGCGCCGTGGA 62.718 66.667 2.29 0.00 0.00 4.02
110 111 1.372997 TCCTCAACGCGAACAGAGC 60.373 57.895 15.93 0.00 0.00 4.09
111 112 1.337817 CGTCCTCAACGCGAACAGAG 61.338 60.000 15.93 13.57 45.76 3.35
112 113 1.371267 CGTCCTCAACGCGAACAGA 60.371 57.895 15.93 3.57 45.76 3.41
113 114 3.147294 CGTCCTCAACGCGAACAG 58.853 61.111 15.93 4.36 45.76 3.16
121 122 0.992802 GCGATGAAGACGTCCTCAAC 59.007 55.000 20.10 16.27 0.00 3.18
122 123 0.108804 GGCGATGAAGACGTCCTCAA 60.109 55.000 20.10 5.04 0.00 3.02
123 124 1.511305 GGCGATGAAGACGTCCTCA 59.489 57.895 18.67 18.67 0.00 3.86
124 125 1.586564 CGGCGATGAAGACGTCCTC 60.587 63.158 13.01 9.91 37.96 3.71
125 126 1.994507 CTCGGCGATGAAGACGTCCT 61.995 60.000 11.27 0.00 44.28 3.85
126 127 1.586564 CTCGGCGATGAAGACGTCC 60.587 63.158 11.27 0.00 44.28 4.79
127 128 2.224885 GCTCGGCGATGAAGACGTC 61.225 63.158 11.27 7.70 44.28 4.34
128 129 2.202623 GCTCGGCGATGAAGACGT 60.203 61.111 11.27 0.00 44.28 4.34
140 141 3.764466 AGGAGAAGCACCGCTCGG 61.764 66.667 6.79 6.79 38.25 4.63
141 142 2.507992 CAGGAGAAGCACCGCTCG 60.508 66.667 0.00 0.00 38.25 5.03
142 143 1.004440 AACAGGAGAAGCACCGCTC 60.004 57.895 0.00 0.00 38.25 5.03
143 144 1.302033 CAACAGGAGAAGCACCGCT 60.302 57.895 0.00 0.00 42.56 5.52
144 145 0.674895 ATCAACAGGAGAAGCACCGC 60.675 55.000 0.00 0.00 0.00 5.68
145 146 1.066573 AGATCAACAGGAGAAGCACCG 60.067 52.381 0.00 0.00 0.00 4.94
146 147 2.777832 AGATCAACAGGAGAAGCACC 57.222 50.000 0.00 0.00 0.00 5.01
147 148 5.391416 GCTAAAAGATCAACAGGAGAAGCAC 60.391 44.000 0.00 0.00 0.00 4.40
148 149 4.697352 GCTAAAAGATCAACAGGAGAAGCA 59.303 41.667 0.00 0.00 0.00 3.91
149 150 4.940654 AGCTAAAAGATCAACAGGAGAAGC 59.059 41.667 0.00 0.00 0.00 3.86
150 151 6.128063 CCAAGCTAAAAGATCAACAGGAGAAG 60.128 42.308 0.00 0.00 0.00 2.85
151 152 5.707298 CCAAGCTAAAAGATCAACAGGAGAA 59.293 40.000 0.00 0.00 0.00 2.87
152 153 5.248640 CCAAGCTAAAAGATCAACAGGAGA 58.751 41.667 0.00 0.00 0.00 3.71
153 154 4.142513 GCCAAGCTAAAAGATCAACAGGAG 60.143 45.833 0.00 0.00 0.00 3.69
154 155 3.758554 GCCAAGCTAAAAGATCAACAGGA 59.241 43.478 0.00 0.00 0.00 3.86
155 156 3.426695 CGCCAAGCTAAAAGATCAACAGG 60.427 47.826 0.00 0.00 0.00 4.00
156 157 3.189287 ACGCCAAGCTAAAAGATCAACAG 59.811 43.478 0.00 0.00 0.00 3.16
157 158 3.058293 CACGCCAAGCTAAAAGATCAACA 60.058 43.478 0.00 0.00 0.00 3.33
158 159 3.492313 CACGCCAAGCTAAAAGATCAAC 58.508 45.455 0.00 0.00 0.00 3.18
159 160 2.487762 CCACGCCAAGCTAAAAGATCAA 59.512 45.455 0.00 0.00 0.00 2.57
160 161 2.083774 CCACGCCAAGCTAAAAGATCA 58.916 47.619 0.00 0.00 0.00 2.92
161 162 2.084546 ACCACGCCAAGCTAAAAGATC 58.915 47.619 0.00 0.00 0.00 2.75
162 163 1.812571 CACCACGCCAAGCTAAAAGAT 59.187 47.619 0.00 0.00 0.00 2.40
163 164 1.234821 CACCACGCCAAGCTAAAAGA 58.765 50.000 0.00 0.00 0.00 2.52
164 165 0.240945 CCACCACGCCAAGCTAAAAG 59.759 55.000 0.00 0.00 0.00 2.27
165 166 0.179015 TCCACCACGCCAAGCTAAAA 60.179 50.000 0.00 0.00 0.00 1.52
166 167 0.605319 CTCCACCACGCCAAGCTAAA 60.605 55.000 0.00 0.00 0.00 1.85
167 168 1.003839 CTCCACCACGCCAAGCTAA 60.004 57.895 0.00 0.00 0.00 3.09
168 169 2.662596 CTCCACCACGCCAAGCTA 59.337 61.111 0.00 0.00 0.00 3.32
169 170 4.335647 CCTCCACCACGCCAAGCT 62.336 66.667 0.00 0.00 0.00 3.74
171 172 3.850098 AAGCCTCCACCACGCCAAG 62.850 63.158 0.00 0.00 0.00 3.61
172 173 3.884774 AAGCCTCCACCACGCCAA 61.885 61.111 0.00 0.00 0.00 4.52
173 174 4.641645 CAAGCCTCCACCACGCCA 62.642 66.667 0.00 0.00 0.00 5.69
174 175 4.643387 ACAAGCCTCCACCACGCC 62.643 66.667 0.00 0.00 0.00 5.68
175 176 3.357079 CACAAGCCTCCACCACGC 61.357 66.667 0.00 0.00 0.00 5.34
176 177 1.669115 CTCACAAGCCTCCACCACG 60.669 63.158 0.00 0.00 0.00 4.94
177 178 1.968540 GCTCACAAGCCTCCACCAC 60.969 63.158 0.00 0.00 43.10 4.16
178 179 2.431683 GCTCACAAGCCTCCACCA 59.568 61.111 0.00 0.00 43.10 4.17
187 188 1.334419 CGTTGGAAAGCAGCTCACAAG 60.334 52.381 0.00 0.00 0.00 3.16
188 189 0.662619 CGTTGGAAAGCAGCTCACAA 59.337 50.000 0.00 0.00 0.00 3.33
189 190 1.785041 GCGTTGGAAAGCAGCTCACA 61.785 55.000 0.00 0.00 0.00 3.58
190 191 1.081840 GCGTTGGAAAGCAGCTCAC 60.082 57.895 0.00 0.00 0.00 3.51
191 192 2.260869 GGCGTTGGAAAGCAGCTCA 61.261 57.895 0.00 0.00 34.54 4.26
192 193 1.518903 AAGGCGTTGGAAAGCAGCTC 61.519 55.000 0.00 0.00 34.54 4.09
193 194 1.109323 AAAGGCGTTGGAAAGCAGCT 61.109 50.000 0.00 0.00 34.54 4.24
194 195 0.940991 CAAAGGCGTTGGAAAGCAGC 60.941 55.000 5.18 0.00 33.18 5.25
195 196 0.385390 ACAAAGGCGTTGGAAAGCAG 59.615 50.000 17.24 0.00 41.97 4.24
196 197 1.681538 TACAAAGGCGTTGGAAAGCA 58.318 45.000 17.24 0.00 41.97 3.91
197 198 2.488153 AGATACAAAGGCGTTGGAAAGC 59.512 45.455 17.24 5.52 41.97 3.51
198 199 4.475944 CAAGATACAAAGGCGTTGGAAAG 58.524 43.478 17.24 0.00 41.97 2.62
199 200 3.305064 GCAAGATACAAAGGCGTTGGAAA 60.305 43.478 17.24 3.19 41.97 3.13
200 201 2.227865 GCAAGATACAAAGGCGTTGGAA 59.772 45.455 17.24 5.61 41.97 3.53
201 202 1.810151 GCAAGATACAAAGGCGTTGGA 59.190 47.619 17.24 9.46 41.97 3.53
202 203 1.135402 GGCAAGATACAAAGGCGTTGG 60.135 52.381 17.24 0.00 41.97 3.77
203 204 1.465689 CGGCAAGATACAAAGGCGTTG 60.466 52.381 11.68 11.68 43.78 4.10
204 205 0.802494 CGGCAAGATACAAAGGCGTT 59.198 50.000 0.00 0.00 43.78 4.84
205 206 2.466867 CGGCAAGATACAAAGGCGT 58.533 52.632 0.00 0.00 43.78 5.68
207 208 3.057526 AGAAAACGGCAAGATACAAAGGC 60.058 43.478 0.00 0.00 0.00 4.35
208 209 4.766404 AGAAAACGGCAAGATACAAAGG 57.234 40.909 0.00 0.00 0.00 3.11
209 210 6.918022 AGAAAAGAAAACGGCAAGATACAAAG 59.082 34.615 0.00 0.00 0.00 2.77
210 211 6.801575 AGAAAAGAAAACGGCAAGATACAAA 58.198 32.000 0.00 0.00 0.00 2.83
211 212 6.385649 AGAAAAGAAAACGGCAAGATACAA 57.614 33.333 0.00 0.00 0.00 2.41
212 213 6.385649 AAGAAAAGAAAACGGCAAGATACA 57.614 33.333 0.00 0.00 0.00 2.29
213 214 7.139392 AGAAAGAAAAGAAAACGGCAAGATAC 58.861 34.615 0.00 0.00 0.00 2.24
214 215 7.272037 AGAAAGAAAAGAAAACGGCAAGATA 57.728 32.000 0.00 0.00 0.00 1.98
215 216 6.149129 AGAAAGAAAAGAAAACGGCAAGAT 57.851 33.333 0.00 0.00 0.00 2.40
216 217 5.576447 AGAAAGAAAAGAAAACGGCAAGA 57.424 34.783 0.00 0.00 0.00 3.02
217 218 5.576774 ACAAGAAAGAAAAGAAAACGGCAAG 59.423 36.000 0.00 0.00 0.00 4.01
218 219 5.347364 CACAAGAAAGAAAAGAAAACGGCAA 59.653 36.000 0.00 0.00 0.00 4.52
219 220 4.862018 CACAAGAAAGAAAAGAAAACGGCA 59.138 37.500 0.00 0.00 0.00 5.69
220 221 4.259810 GCACAAGAAAGAAAAGAAAACGGC 60.260 41.667 0.00 0.00 0.00 5.68
221 222 5.102313 AGCACAAGAAAGAAAAGAAAACGG 58.898 37.500 0.00 0.00 0.00 4.44
222 223 5.053025 CGAGCACAAGAAAGAAAAGAAAACG 60.053 40.000 0.00 0.00 0.00 3.60
223 224 5.800438 ACGAGCACAAGAAAGAAAAGAAAAC 59.200 36.000 0.00 0.00 0.00 2.43
224 225 5.949735 ACGAGCACAAGAAAGAAAAGAAAA 58.050 33.333 0.00 0.00 0.00 2.29
225 226 5.560966 ACGAGCACAAGAAAGAAAAGAAA 57.439 34.783 0.00 0.00 0.00 2.52
226 227 5.448632 GGAACGAGCACAAGAAAGAAAAGAA 60.449 40.000 0.00 0.00 0.00 2.52
227 228 4.035208 GGAACGAGCACAAGAAAGAAAAGA 59.965 41.667 0.00 0.00 0.00 2.52
228 229 4.282873 GGAACGAGCACAAGAAAGAAAAG 58.717 43.478 0.00 0.00 0.00 2.27
229 230 4.287238 GGAACGAGCACAAGAAAGAAAA 57.713 40.909 0.00 0.00 0.00 2.29
230 231 3.963383 GGAACGAGCACAAGAAAGAAA 57.037 42.857 0.00 0.00 0.00 2.52
246 247 2.159747 GCCACGATTACAAACTCGGAAC 60.160 50.000 0.00 0.00 39.16 3.62
247 248 2.070783 GCCACGATTACAAACTCGGAA 58.929 47.619 0.00 0.00 39.16 4.30
248 249 1.673626 GGCCACGATTACAAACTCGGA 60.674 52.381 0.00 0.00 39.16 4.55
249 250 0.725117 GGCCACGATTACAAACTCGG 59.275 55.000 0.00 0.00 39.16 4.63
250 251 0.368907 CGGCCACGATTACAAACTCG 59.631 55.000 2.24 0.00 44.60 4.18
251 252 0.725117 CCGGCCACGATTACAAACTC 59.275 55.000 2.24 0.00 44.60 3.01
252 253 0.035739 ACCGGCCACGATTACAAACT 59.964 50.000 0.00 0.00 44.60 2.66
253 254 0.876399 AACCGGCCACGATTACAAAC 59.124 50.000 0.00 0.00 44.60 2.93
254 255 0.875728 CAACCGGCCACGATTACAAA 59.124 50.000 0.00 0.00 44.60 2.83
255 256 0.035036 TCAACCGGCCACGATTACAA 59.965 50.000 0.00 0.00 44.60 2.41
256 257 0.250793 ATCAACCGGCCACGATTACA 59.749 50.000 0.00 0.00 44.60 2.41
257 258 0.655733 CATCAACCGGCCACGATTAC 59.344 55.000 0.00 0.00 44.60 1.89
258 259 0.462937 CCATCAACCGGCCACGATTA 60.463 55.000 0.00 0.00 44.60 1.75
259 260 1.748879 CCATCAACCGGCCACGATT 60.749 57.895 0.00 0.00 44.60 3.34
260 261 2.124736 CCATCAACCGGCCACGAT 60.125 61.111 0.00 0.00 44.60 3.73
267 268 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
268 269 4.804108 TGAATTAACAAAGCCATCAACCG 58.196 39.130 0.00 0.00 0.00 4.44
269 270 7.120789 CTTTGAATTAACAAAGCCATCAACC 57.879 36.000 6.67 0.00 46.05 3.77
279 280 2.630580 AGCCCGGCTTTGAATTAACAAA 59.369 40.909 5.94 0.00 33.89 2.83
280 281 2.230266 GAGCCCGGCTTTGAATTAACAA 59.770 45.455 14.70 0.00 39.88 2.83
281 282 1.816224 GAGCCCGGCTTTGAATTAACA 59.184 47.619 14.70 0.00 39.88 2.41
282 283 2.092323 AGAGCCCGGCTTTGAATTAAC 58.908 47.619 14.70 0.00 39.88 2.01
283 284 2.507407 AGAGCCCGGCTTTGAATTAA 57.493 45.000 14.70 0.00 39.88 1.40
284 285 2.507407 AAGAGCCCGGCTTTGAATTA 57.493 45.000 14.70 0.00 39.88 1.40
285 286 1.632589 AAAGAGCCCGGCTTTGAATT 58.367 45.000 14.70 2.03 39.88 2.17
286 287 1.632589 AAAAGAGCCCGGCTTTGAAT 58.367 45.000 14.70 0.00 39.88 2.57
287 288 1.068434 CAAAAAGAGCCCGGCTTTGAA 59.932 47.619 14.70 0.00 39.88 2.69
288 289 0.673437 CAAAAAGAGCCCGGCTTTGA 59.327 50.000 14.70 0.00 39.88 2.69
289 290 0.673437 TCAAAAAGAGCCCGGCTTTG 59.327 50.000 14.70 13.91 39.88 2.77
290 291 0.961753 CTCAAAAAGAGCCCGGCTTT 59.038 50.000 14.70 4.65 39.88 3.51
291 292 2.646121 CTCAAAAAGAGCCCGGCTT 58.354 52.632 14.70 0.50 39.88 4.35
292 293 4.404691 CTCAAAAAGAGCCCGGCT 57.595 55.556 13.16 13.16 43.88 5.52
300 301 2.925724 TGGAACGAAGGCTCAAAAAGA 58.074 42.857 0.00 0.00 0.00 2.52
301 302 3.708563 TTGGAACGAAGGCTCAAAAAG 57.291 42.857 0.00 0.00 0.00 2.27
302 303 4.457834 TTTTGGAACGAAGGCTCAAAAA 57.542 36.364 6.97 0.00 35.32 1.94
303 304 4.457834 TTTTTGGAACGAAGGCTCAAAA 57.542 36.364 5.68 5.68 36.10 2.44
324 325 5.325239 AGCCAAGGTTAGCACTATCTTTTT 58.675 37.500 0.00 0.00 0.00 1.94
325 326 4.923415 AGCCAAGGTTAGCACTATCTTTT 58.077 39.130 0.00 0.00 0.00 2.27
326 327 4.576330 AGCCAAGGTTAGCACTATCTTT 57.424 40.909 0.00 0.00 0.00 2.52
327 328 4.576330 AAGCCAAGGTTAGCACTATCTT 57.424 40.909 0.00 0.00 0.00 2.40
328 329 4.265073 CAAAGCCAAGGTTAGCACTATCT 58.735 43.478 0.00 0.00 0.00 1.98
329 330 3.181496 GCAAAGCCAAGGTTAGCACTATC 60.181 47.826 0.00 0.00 0.00 2.08
330 331 2.755103 GCAAAGCCAAGGTTAGCACTAT 59.245 45.455 0.00 0.00 0.00 2.12
331 332 2.159382 GCAAAGCCAAGGTTAGCACTA 58.841 47.619 0.00 0.00 0.00 2.74
332 333 0.961753 GCAAAGCCAAGGTTAGCACT 59.038 50.000 0.00 0.00 0.00 4.40
333 334 0.961753 AGCAAAGCCAAGGTTAGCAC 59.038 50.000 3.85 0.00 0.00 4.40
334 335 1.247567 GAGCAAAGCCAAGGTTAGCA 58.752 50.000 3.85 0.00 0.00 3.49
335 336 0.528017 GGAGCAAAGCCAAGGTTAGC 59.472 55.000 0.00 0.00 0.00 3.09
336 337 2.087646 GAGGAGCAAAGCCAAGGTTAG 58.912 52.381 0.00 0.00 0.00 2.34
337 338 1.610624 CGAGGAGCAAAGCCAAGGTTA 60.611 52.381 0.00 0.00 0.00 2.85
338 339 0.890996 CGAGGAGCAAAGCCAAGGTT 60.891 55.000 0.00 0.00 0.00 3.50
339 340 1.302832 CGAGGAGCAAAGCCAAGGT 60.303 57.895 0.00 0.00 0.00 3.50
340 341 2.042831 CCGAGGAGCAAAGCCAAGG 61.043 63.158 0.00 0.00 0.00 3.61
341 342 2.694760 GCCGAGGAGCAAAGCCAAG 61.695 63.158 0.00 0.00 0.00 3.61
342 343 2.672996 GCCGAGGAGCAAAGCCAA 60.673 61.111 0.00 0.00 0.00 4.52
343 344 3.640407 AGCCGAGGAGCAAAGCCA 61.640 61.111 0.00 0.00 34.23 4.75
344 345 3.130160 CAGCCGAGGAGCAAAGCC 61.130 66.667 0.00 0.00 34.23 4.35
345 346 3.130160 CCAGCCGAGGAGCAAAGC 61.130 66.667 0.00 0.00 34.23 3.51
346 347 2.665000 TCCAGCCGAGGAGCAAAG 59.335 61.111 0.00 0.00 32.77 2.77
352 353 3.617368 GCTAACTCCAGCCGAGGA 58.383 61.111 3.64 0.00 43.57 3.71
358 359 3.283259 AAGTAATGGGCTAACTCCAGC 57.717 47.619 0.00 0.00 41.02 4.85
359 360 9.574516 AATATTTAAGTAATGGGCTAACTCCAG 57.425 33.333 0.00 0.00 37.75 3.86
365 366 9.715121 CCGACTAATATTTAAGTAATGGGCTAA 57.285 33.333 0.00 0.00 0.00 3.09
366 367 9.092338 TCCGACTAATATTTAAGTAATGGGCTA 57.908 33.333 0.00 0.00 0.00 3.93
367 368 7.876582 GTCCGACTAATATTTAAGTAATGGGCT 59.123 37.037 0.00 0.00 0.00 5.19
368 369 7.876582 AGTCCGACTAATATTTAAGTAATGGGC 59.123 37.037 0.00 0.00 0.00 5.36
369 370 9.420551 GAGTCCGACTAATATTTAAGTAATGGG 57.579 37.037 0.00 0.00 0.00 4.00
403 404 7.310796 GGGGTAACAATGGGCTAGTTAATTTTT 60.311 37.037 0.00 0.00 39.74 1.94
404 405 6.155565 GGGGTAACAATGGGCTAGTTAATTTT 59.844 38.462 0.00 0.00 39.74 1.82
405 406 5.659525 GGGGTAACAATGGGCTAGTTAATTT 59.340 40.000 0.00 0.00 39.74 1.82
406 407 5.043657 AGGGGTAACAATGGGCTAGTTAATT 60.044 40.000 0.00 0.00 39.74 1.40
407 408 4.480908 AGGGGTAACAATGGGCTAGTTAAT 59.519 41.667 0.00 0.00 39.74 1.40
408 409 3.853784 AGGGGTAACAATGGGCTAGTTAA 59.146 43.478 0.00 0.00 39.74 2.01
409 410 3.466836 AGGGGTAACAATGGGCTAGTTA 58.533 45.455 0.00 0.00 39.74 2.24
410 411 2.284770 AGGGGTAACAATGGGCTAGTT 58.715 47.619 0.00 0.00 39.74 2.24
411 412 1.981259 AGGGGTAACAATGGGCTAGT 58.019 50.000 0.00 0.00 39.74 2.57
412 413 4.513406 TTTAGGGGTAACAATGGGCTAG 57.487 45.455 0.00 0.00 39.74 3.42
413 414 4.949966 TTTTAGGGGTAACAATGGGCTA 57.050 40.909 0.00 0.00 39.74 3.93
414 415 3.837399 TTTTAGGGGTAACAATGGGCT 57.163 42.857 0.00 0.00 39.74 5.19
415 416 6.547930 TTATTTTTAGGGGTAACAATGGGC 57.452 37.500 0.00 0.00 39.74 5.36
416 417 6.382859 AGCTTATTTTTAGGGGTAACAATGGG 59.617 38.462 0.00 0.00 39.74 4.00
417 418 7.418337 AGCTTATTTTTAGGGGTAACAATGG 57.582 36.000 0.00 0.00 39.74 3.16
418 419 9.797556 GTTAGCTTATTTTTAGGGGTAACAATG 57.202 33.333 0.00 0.00 39.28 2.82
419 420 8.974238 GGTTAGCTTATTTTTAGGGGTAACAAT 58.026 33.333 12.87 0.00 40.41 2.71
420 421 7.396907 GGGTTAGCTTATTTTTAGGGGTAACAA 59.603 37.037 12.87 0.00 40.41 2.83
421 422 6.891361 GGGTTAGCTTATTTTTAGGGGTAACA 59.109 38.462 12.87 0.00 40.41 2.41
422 423 6.891361 TGGGTTAGCTTATTTTTAGGGGTAAC 59.109 38.462 0.00 0.00 38.97 2.50
423 424 7.042106 TGGGTTAGCTTATTTTTAGGGGTAA 57.958 36.000 0.00 0.00 0.00 2.85
424 425 6.655376 TGGGTTAGCTTATTTTTAGGGGTA 57.345 37.500 0.00 0.00 0.00 3.69
425 426 5.539669 TGGGTTAGCTTATTTTTAGGGGT 57.460 39.130 0.00 0.00 0.00 4.95
426 427 6.382859 ACAATGGGTTAGCTTATTTTTAGGGG 59.617 38.462 0.00 0.00 0.00 4.79
427 428 7.418337 ACAATGGGTTAGCTTATTTTTAGGG 57.582 36.000 0.00 0.00 0.00 3.53
432 433 9.869757 GTGATAAACAATGGGTTAGCTTATTTT 57.130 29.630 0.00 0.00 39.29 1.82
433 434 9.030452 TGTGATAAACAATGGGTTAGCTTATTT 57.970 29.630 0.00 0.00 39.29 1.40
434 435 8.588290 TGTGATAAACAATGGGTTAGCTTATT 57.412 30.769 0.00 0.00 39.29 1.40
435 436 8.766994 ATGTGATAAACAATGGGTTAGCTTAT 57.233 30.769 0.00 0.00 43.61 1.73
436 437 9.116067 GTATGTGATAAACAATGGGTTAGCTTA 57.884 33.333 0.00 0.00 43.61 3.09
437 438 7.201696 CGTATGTGATAAACAATGGGTTAGCTT 60.202 37.037 0.00 0.00 43.61 3.74
438 439 6.260050 CGTATGTGATAAACAATGGGTTAGCT 59.740 38.462 0.00 0.00 43.61 3.32
439 440 6.037830 ACGTATGTGATAAACAATGGGTTAGC 59.962 38.462 0.00 0.00 43.61 3.09
440 441 7.548196 ACGTATGTGATAAACAATGGGTTAG 57.452 36.000 0.00 0.00 43.61 2.34
463 464 1.530323 AAAAGGGTCCACGTATGCAC 58.470 50.000 0.00 0.00 0.00 4.57
464 465 1.883275 CAAAAAGGGTCCACGTATGCA 59.117 47.619 0.00 0.00 0.00 3.96
465 466 2.156098 TCAAAAAGGGTCCACGTATGC 58.844 47.619 0.00 0.00 0.00 3.14
466 467 4.457603 TGATTCAAAAAGGGTCCACGTATG 59.542 41.667 0.00 0.00 0.00 2.39
467 468 4.658063 TGATTCAAAAAGGGTCCACGTAT 58.342 39.130 0.00 0.00 0.00 3.06
468 469 4.088056 TGATTCAAAAAGGGTCCACGTA 57.912 40.909 0.00 0.00 0.00 3.57
469 470 2.938838 TGATTCAAAAAGGGTCCACGT 58.061 42.857 0.00 0.00 0.00 4.49
470 471 4.218417 AGATTGATTCAAAAAGGGTCCACG 59.782 41.667 2.68 0.00 0.00 4.94
471 472 5.728637 AGATTGATTCAAAAAGGGTCCAC 57.271 39.130 2.68 0.00 0.00 4.02
472 473 6.127366 GCATAGATTGATTCAAAAAGGGTCCA 60.127 38.462 2.68 0.00 0.00 4.02
473 474 6.127366 TGCATAGATTGATTCAAAAAGGGTCC 60.127 38.462 2.68 0.00 0.00 4.46
474 475 6.866480 TGCATAGATTGATTCAAAAAGGGTC 58.134 36.000 2.68 0.00 0.00 4.46
475 476 6.855763 TGCATAGATTGATTCAAAAAGGGT 57.144 33.333 2.68 0.00 0.00 4.34
476 477 6.202188 GCATGCATAGATTGATTCAAAAAGGG 59.798 38.462 14.21 0.00 0.00 3.95
477 478 6.759356 TGCATGCATAGATTGATTCAAAAAGG 59.241 34.615 18.46 0.00 0.00 3.11
478 479 7.491372 AGTGCATGCATAGATTGATTCAAAAAG 59.509 33.333 25.64 0.00 0.00 2.27
479 480 7.324935 AGTGCATGCATAGATTGATTCAAAAA 58.675 30.769 25.64 0.00 0.00 1.94
480 481 6.869695 AGTGCATGCATAGATTGATTCAAAA 58.130 32.000 25.64 0.00 0.00 2.44
481 482 6.459670 AGTGCATGCATAGATTGATTCAAA 57.540 33.333 25.64 0.00 0.00 2.69
482 483 6.769341 ACTAGTGCATGCATAGATTGATTCAA 59.231 34.615 28.56 0.75 0.00 2.69
483 484 6.204108 CACTAGTGCATGCATAGATTGATTCA 59.796 38.462 28.56 3.42 0.00 2.57
484 485 6.600350 CACTAGTGCATGCATAGATTGATTC 58.400 40.000 28.56 14.08 0.00 2.52
485 486 6.555812 CACTAGTGCATGCATAGATTGATT 57.444 37.500 28.56 13.06 0.00 2.57
497 498 6.706853 GGATTTACCTGAGCACTAGTGCATG 61.707 48.000 40.88 29.83 46.32 4.06
498 499 4.684485 GGATTTACCTGAGCACTAGTGCAT 60.684 45.833 40.88 28.57 46.32 3.96
499 500 3.369471 GGATTTACCTGAGCACTAGTGCA 60.369 47.826 40.88 25.24 46.32 4.57
500 501 3.198872 GGATTTACCTGAGCACTAGTGC 58.801 50.000 35.56 35.56 45.26 4.40
501 502 3.798202 GGGATTTACCTGAGCACTAGTG 58.202 50.000 18.93 18.93 38.98 2.74
511 512 2.431057 ACTGCTAGTCGGGATTTACCTG 59.569 50.000 0.00 0.00 45.93 4.00
512 513 2.748388 ACTGCTAGTCGGGATTTACCT 58.252 47.619 0.00 0.00 38.98 3.08
513 514 4.660789 TTACTGCTAGTCGGGATTTACC 57.339 45.455 0.00 0.00 38.08 2.85
514 515 6.985059 AGATTTTACTGCTAGTCGGGATTTAC 59.015 38.462 0.00 0.00 0.00 2.01
515 516 6.984474 CAGATTTTACTGCTAGTCGGGATTTA 59.016 38.462 0.00 0.00 0.00 1.40
516 517 5.817816 CAGATTTTACTGCTAGTCGGGATTT 59.182 40.000 0.00 0.00 0.00 2.17
517 518 5.104900 ACAGATTTTACTGCTAGTCGGGATT 60.105 40.000 0.00 0.00 41.06 3.01
518 519 4.406003 ACAGATTTTACTGCTAGTCGGGAT 59.594 41.667 0.00 0.00 41.06 3.85
519 520 3.767673 ACAGATTTTACTGCTAGTCGGGA 59.232 43.478 0.00 0.00 41.06 5.14
520 521 4.113354 GACAGATTTTACTGCTAGTCGGG 58.887 47.826 0.00 0.00 41.06 5.14
521 522 4.113354 GGACAGATTTTACTGCTAGTCGG 58.887 47.826 0.00 0.00 41.06 4.79
522 523 4.744570 TGGACAGATTTTACTGCTAGTCG 58.255 43.478 0.00 0.00 41.06 4.18
523 524 6.595716 ACAATGGACAGATTTTACTGCTAGTC 59.404 38.462 0.00 0.00 41.06 2.59
524 525 6.476378 ACAATGGACAGATTTTACTGCTAGT 58.524 36.000 0.00 0.00 41.06 2.57
525 526 6.992063 ACAATGGACAGATTTTACTGCTAG 57.008 37.500 0.00 0.00 41.06 3.42
526 527 7.759489 AAACAATGGACAGATTTTACTGCTA 57.241 32.000 0.00 0.00 41.06 3.49
527 528 6.655078 AAACAATGGACAGATTTTACTGCT 57.345 33.333 0.00 0.00 41.06 4.24
528 529 8.243426 TGATAAACAATGGACAGATTTTACTGC 58.757 33.333 0.00 0.00 41.06 4.40
531 532 9.023967 GCATGATAAACAATGGACAGATTTTAC 57.976 33.333 0.00 0.00 0.00 2.01
532 533 8.747471 TGCATGATAAACAATGGACAGATTTTA 58.253 29.630 0.00 0.00 0.00 1.52
533 534 7.613585 TGCATGATAAACAATGGACAGATTTT 58.386 30.769 0.00 0.00 0.00 1.82
534 535 7.172868 TGCATGATAAACAATGGACAGATTT 57.827 32.000 0.00 0.00 0.00 2.17
535 536 6.778834 TGCATGATAAACAATGGACAGATT 57.221 33.333 0.00 0.00 0.00 2.40
536 537 6.322969 ACATGCATGATAAACAATGGACAGAT 59.677 34.615 32.75 0.57 0.00 2.90
537 538 5.653330 ACATGCATGATAAACAATGGACAGA 59.347 36.000 32.75 0.00 0.00 3.41
538 539 5.898174 ACATGCATGATAAACAATGGACAG 58.102 37.500 32.75 0.18 0.00 3.51
539 540 5.918426 ACATGCATGATAAACAATGGACA 57.082 34.783 32.75 0.00 0.00 4.02
540 541 6.794374 TGTACATGCATGATAAACAATGGAC 58.206 36.000 32.75 9.35 31.99 4.02
541 542 7.401955 TTGTACATGCATGATAAACAATGGA 57.598 32.000 32.75 12.30 0.00 3.41
542 543 7.707464 ACATTGTACATGCATGATAAACAATGG 59.293 33.333 39.45 31.80 43.30 3.16
543 544 8.637281 ACATTGTACATGCATGATAAACAATG 57.363 30.769 38.01 38.01 44.07 2.82
544 545 8.689061 AGACATTGTACATGCATGATAAACAAT 58.311 29.630 32.75 29.77 0.00 2.71
545 546 8.054152 AGACATTGTACATGCATGATAAACAA 57.946 30.769 32.75 29.11 0.00 2.83
546 547 7.336427 TGAGACATTGTACATGCATGATAAACA 59.664 33.333 32.75 23.95 0.00 2.83
547 548 7.641411 GTGAGACATTGTACATGCATGATAAAC 59.359 37.037 32.75 21.96 0.00 2.01
548 549 7.336427 TGTGAGACATTGTACATGCATGATAAA 59.664 33.333 32.75 21.10 0.00 1.40
549 550 6.822676 TGTGAGACATTGTACATGCATGATAA 59.177 34.615 32.75 21.82 0.00 1.75
550 551 6.347696 TGTGAGACATTGTACATGCATGATA 58.652 36.000 32.75 17.51 0.00 2.15
551 552 5.187687 TGTGAGACATTGTACATGCATGAT 58.812 37.500 32.75 18.51 0.00 2.45
552 553 4.577875 TGTGAGACATTGTACATGCATGA 58.422 39.130 32.75 13.72 0.00 3.07
553 554 4.729746 GCTGTGAGACATTGTACATGCATG 60.730 45.833 25.09 25.09 0.00 4.06
554 555 3.376234 GCTGTGAGACATTGTACATGCAT 59.624 43.478 0.00 0.00 0.00 3.96
555 556 2.743664 GCTGTGAGACATTGTACATGCA 59.256 45.455 0.00 0.00 0.00 3.96
556 557 2.096496 GGCTGTGAGACATTGTACATGC 59.904 50.000 0.00 3.34 0.00 4.06
557 558 3.337358 TGGCTGTGAGACATTGTACATG 58.663 45.455 0.00 0.00 0.00 3.21
558 559 3.701205 TGGCTGTGAGACATTGTACAT 57.299 42.857 0.00 0.00 0.00 2.29
559 560 3.138304 GTTGGCTGTGAGACATTGTACA 58.862 45.455 0.00 0.00 30.15 2.90
560 561 2.157668 CGTTGGCTGTGAGACATTGTAC 59.842 50.000 0.00 0.00 30.15 2.90
561 562 2.036604 TCGTTGGCTGTGAGACATTGTA 59.963 45.455 0.00 0.00 30.15 2.41
562 563 1.202639 TCGTTGGCTGTGAGACATTGT 60.203 47.619 0.00 0.00 30.15 2.71
563 564 1.462283 CTCGTTGGCTGTGAGACATTG 59.538 52.381 0.00 0.00 30.15 2.82
564 565 1.800805 CTCGTTGGCTGTGAGACATT 58.199 50.000 0.00 0.00 30.15 2.71
565 566 0.671781 GCTCGTTGGCTGTGAGACAT 60.672 55.000 4.94 0.00 30.15 3.06
566 567 1.300931 GCTCGTTGGCTGTGAGACA 60.301 57.895 4.94 0.00 31.31 3.41
567 568 2.029844 GGCTCGTTGGCTGTGAGAC 61.030 63.158 4.94 0.00 38.32 3.36
568 569 2.343758 GGCTCGTTGGCTGTGAGA 59.656 61.111 4.94 0.00 38.32 3.27
569 570 2.743928 GGGCTCGTTGGCTGTGAG 60.744 66.667 5.03 0.00 41.48 3.51
570 571 4.680237 CGGGCTCGTTGGCTGTGA 62.680 66.667 0.00 0.00 42.06 3.58
720 727 2.464157 AACTTCCAGCAGTAGCAGAC 57.536 50.000 0.00 0.00 45.49 3.51
826 833 1.738099 GTGTTGAGGCGCGTCATCT 60.738 57.895 30.90 8.35 0.00 2.90
935 942 1.130749 CGGTGTCTGAAGAGTAGACCG 59.869 57.143 0.00 0.00 43.00 4.79
979 986 0.474660 AGGTTCTGGGAGCTCCACTT 60.475 55.000 33.29 16.72 41.46 3.16
1038 1045 1.520342 GACGGCCAGATGCAGAGAC 60.520 63.158 2.24 0.00 43.89 3.36
1081 1094 3.834799 GCGTACCACTCCCTCCCG 61.835 72.222 0.00 0.00 0.00 5.14
1093 1109 2.094762 AAAGTGACCATGGAGCGTAC 57.905 50.000 21.47 9.38 0.00 3.67
1153 1169 0.968393 AAACCGTGGTTGCTGGTGTT 60.968 50.000 4.79 0.00 38.47 3.32
1164 1180 2.032071 AGCCCGAAGAAACCGTGG 59.968 61.111 0.00 0.00 0.00 4.94
1165 1181 1.566018 GACAGCCCGAAGAAACCGTG 61.566 60.000 0.00 0.00 0.00 4.94
1187 1203 4.309950 CGGTGTATAGGCGCCCCC 62.310 72.222 26.15 12.58 35.72 5.40
1219 1235 0.734889 CAGAGCCGGCATTTACCTTG 59.265 55.000 31.54 10.40 0.00 3.61
1238 1254 0.688087 ATCCTCGAGAACCCAGACCC 60.688 60.000 15.71 0.00 0.00 4.46
1269 1285 1.192146 TACACCTCAGGGTCCACAGC 61.192 60.000 0.00 0.00 45.41 4.40
1283 1299 1.740025 GAAGAATGCTGGCAGTACACC 59.260 52.381 17.16 4.58 0.00 4.16
1375 1391 6.489361 GCCACATCTTGAAGGAATATCAGATT 59.511 38.462 0.00 0.00 0.00 2.40
1376 1392 6.002704 GCCACATCTTGAAGGAATATCAGAT 58.997 40.000 0.00 0.00 0.00 2.90
1377 1393 5.371526 GCCACATCTTGAAGGAATATCAGA 58.628 41.667 0.00 0.00 0.00 3.27
1403 1419 2.292267 AGGACATAAGCAATGCTTCCG 58.708 47.619 24.88 17.99 46.77 4.30
1434 1453 0.874390 CAACATCCAGTTCACCGGTG 59.126 55.000 29.26 29.26 38.74 4.94
1441 1460 2.999355 GAGAGCAGACAACATCCAGTTC 59.001 50.000 0.00 0.00 38.74 3.01
1450 1469 2.682836 GTCTCCAAGAGAGCAGACAAC 58.317 52.381 0.00 0.00 42.90 3.32
1532 1551 2.030893 TGAAGCTGCTCCAAAATTCACG 60.031 45.455 1.00 0.00 0.00 4.35
1681 1779 2.888414 TGCATCGGAACAGGACGATATA 59.112 45.455 0.00 0.00 46.92 0.86
1696 1794 6.311445 ACAGAGTACTACTTTCAAATGCATCG 59.689 38.462 0.00 0.00 0.00 3.84
1751 1849 8.726870 TTGCAAGGTACTATTAAATCACTACC 57.273 34.615 0.00 0.00 38.49 3.18
1774 1929 7.627298 ATTCAGAGAAGTTGATCCAAGATTG 57.373 36.000 0.00 0.00 0.00 2.67
1811 1974 4.787534 AGATTTCACTGAAGGAATCTCCCT 59.212 41.667 0.00 0.00 37.19 4.20
1844 2007 4.452795 CACGTATTGGTATTGGTTGACACA 59.547 41.667 0.00 0.00 0.00 3.72
1942 2224 9.066892 GGCATTACATATCCAAATCTTCACTAA 57.933 33.333 0.00 0.00 0.00 2.24
1952 2240 4.644234 CCTGTGTGGCATTACATATCCAAA 59.356 41.667 7.80 0.00 32.43 3.28
1995 2284 3.053917 GGACACTATGGGGGTGTTAACAT 60.054 47.826 12.26 0.00 46.23 2.71
1997 2286 2.306512 TGGACACTATGGGGGTGTTAAC 59.693 50.000 0.00 0.00 46.23 2.01
2004 2293 1.846439 AGAACATGGACACTATGGGGG 59.154 52.381 0.00 0.00 0.00 5.40
2018 2307 3.034635 ACGGAGAGCTTATCCAGAACAT 58.965 45.455 16.62 0.00 36.57 2.71
2026 2315 0.394565 ATGGCCACGGAGAGCTTATC 59.605 55.000 8.16 0.00 0.00 1.75
2027 2316 0.839946 AATGGCCACGGAGAGCTTAT 59.160 50.000 8.16 0.00 0.00 1.73
2031 2320 1.017387 CTAAAATGGCCACGGAGAGC 58.983 55.000 8.16 0.00 0.00 4.09
2034 2323 2.420022 CAGAACTAAAATGGCCACGGAG 59.580 50.000 8.16 5.84 0.00 4.63
2038 2327 3.658757 TTGCAGAACTAAAATGGCCAC 57.341 42.857 8.16 0.00 0.00 5.01
2047 2336 6.240894 AGTCAGGAATTCATTGCAGAACTAA 58.759 36.000 7.93 0.00 0.00 2.24
2119 2475 4.718940 ACCTTCACAAAAGTTTCCAGTG 57.281 40.909 8.64 8.64 0.00 3.66
2228 2586 6.449635 TTGACTAAAGTTGCTGTCACATTT 57.550 33.333 5.65 0.00 38.87 2.32
2231 2589 5.163663 CCTTTTGACTAAAGTTGCTGTCACA 60.164 40.000 8.29 0.00 41.41 3.58
2234 2592 5.500645 ACCTTTTGACTAAAGTTGCTGTC 57.499 39.130 8.29 0.00 41.41 3.51
2235 2593 6.354130 TCTACCTTTTGACTAAAGTTGCTGT 58.646 36.000 8.29 2.32 41.41 4.40
2236 2594 6.861065 TCTACCTTTTGACTAAAGTTGCTG 57.139 37.500 8.29 0.00 41.41 4.41
2238 2596 7.203255 ACATCTACCTTTTGACTAAAGTTGC 57.797 36.000 8.29 0.00 41.41 4.17
2239 2597 9.450807 CAAACATCTACCTTTTGACTAAAGTTG 57.549 33.333 8.29 1.34 41.41 3.16
2396 3189 6.095440 TCAGTTAAATAGCCAGGAAGATTTGC 59.905 38.462 0.00 0.00 0.00 3.68
2462 3257 8.561536 TCTTTCTGGTTTGATATACCTATCCA 57.438 34.615 0.00 0.00 36.60 3.41
2499 3294 5.431765 ACTGTCATGTCAAAGTCAACTTCT 58.568 37.500 0.00 0.00 34.61 2.85
2511 3306 3.473923 TGAGCAAGAACTGTCATGTCA 57.526 42.857 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.