Multiple sequence alignment - TraesCS1B01G461400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G461400 chr1B 100.000 2854 0 0 1 2854 674473536 674470683 0.000000e+00 5271.0
1 TraesCS1B01G461400 chr1B 85.106 188 28 0 1004 1191 674375170 674374983 2.900000e-45 193.0
2 TraesCS1B01G461400 chr1B 97.143 35 1 0 1615 1649 661920601 661920567 3.070000e-05 60.2
3 TraesCS1B01G461400 chr1A 93.768 706 38 5 1247 1951 581305512 581304812 0.000000e+00 1055.0
4 TraesCS1B01G461400 chr1A 91.538 390 29 4 889 1275 581305950 581305562 4.190000e-148 534.0
5 TraesCS1B01G461400 chr1A 81.970 599 84 12 2228 2807 577823851 577824444 1.190000e-133 486.0
6 TraesCS1B01G461400 chr1A 97.143 35 1 0 1615 1649 365597245 365597279 3.070000e-05 60.2
7 TraesCS1B01G461400 chr5D 85.118 719 79 19 2105 2801 422034153 422034865 0.000000e+00 710.0
8 TraesCS1B01G461400 chr5D 84.736 701 81 17 2123 2802 73745620 73746315 0.000000e+00 678.0
9 TraesCS1B01G461400 chr5D 90.358 363 35 0 1 363 424168530 424168168 7.150000e-131 477.0
10 TraesCS1B01G461400 chr2D 85.139 720 77 21 2111 2808 198429863 198430574 0.000000e+00 710.0
11 TraesCS1B01G461400 chr2D 83.158 95 11 4 614 706 318561583 318561674 6.550000e-12 82.4
12 TraesCS1B01G461400 chr2D 100.000 31 0 0 1615 1645 343376030 343376000 1.100000e-04 58.4
13 TraesCS1B01G461400 chr2D 97.059 34 0 1 1615 1648 126830033 126830065 3.970000e-04 56.5
14 TraesCS1B01G461400 chr1D 85.331 709 74 20 2116 2801 400304023 400303322 0.000000e+00 706.0
15 TraesCS1B01G461400 chr1D 92.079 404 25 7 1709 2107 484193618 484193217 1.920000e-156 562.0
16 TraesCS1B01G461400 chr1D 79.973 739 92 25 2106 2803 469028927 469029650 7.100000e-136 494.0
17 TraesCS1B01G461400 chr1D 91.738 351 20 8 1270 1615 484193978 484193632 1.990000e-131 479.0
18 TraesCS1B01G461400 chr1D 87.500 144 18 0 1048 1191 484141506 484141363 1.760000e-37 167.0
19 TraesCS1B01G461400 chr1D 80.537 149 20 7 1 141 475200753 475200606 3.890000e-19 106.0
20 TraesCS1B01G461400 chr4A 85.196 716 70 11 2116 2798 706494974 706495686 0.000000e+00 702.0
21 TraesCS1B01G461400 chr6D 84.746 708 82 17 2116 2802 422944457 422945159 0.000000e+00 686.0
22 TraesCS1B01G461400 chr3D 84.583 707 83 17 2116 2801 285171075 285171776 0.000000e+00 678.0
23 TraesCS1B01G461400 chr3D 84.583 707 83 17 2116 2801 582243407 582244108 0.000000e+00 678.0
24 TraesCS1B01G461400 chr3D 83.150 635 69 17 2 611 506876687 506876066 1.930000e-151 545.0
25 TraesCS1B01G461400 chr5B 83.688 705 92 17 2114 2799 411762118 411761418 0.000000e+00 643.0
26 TraesCS1B01G461400 chr5B 82.278 711 91 22 2112 2802 400079308 400080003 1.470000e-162 582.0
27 TraesCS1B01G461400 chr5B 97.059 34 1 0 1616 1649 439967278 439967311 1.100000e-04 58.4
28 TraesCS1B01G461400 chr3A 86.592 179 24 0 629 807 684752347 684752525 6.240000e-47 198.0
29 TraesCS1B01G461400 chr2A 80.000 200 24 4 620 803 740160594 740160395 1.780000e-27 134.0
30 TraesCS1B01G461400 chr6A 78.616 159 24 8 1 150 13069024 13068867 2.340000e-16 97.1
31 TraesCS1B01G461400 chr3B 88.750 80 8 1 1 80 529676443 529676521 2.340000e-16 97.1
32 TraesCS1B01G461400 chr4D 93.548 62 4 0 1 62 52181159 52181098 3.030000e-15 93.5
33 TraesCS1B01G461400 chr4D 94.595 37 1 1 1614 1649 196892237 196892201 3.970000e-04 56.5
34 TraesCS1B01G461400 chr7A 78.523 149 23 7 1 141 74895397 74895544 3.920000e-14 89.8
35 TraesCS1B01G461400 chr7D 94.444 36 2 0 1614 1649 153171719 153171754 3.970000e-04 56.5
36 TraesCS1B01G461400 chr5A 87.500 48 4 2 1603 1649 656488182 656488136 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G461400 chr1B 674470683 674473536 2853 True 5271.0 5271 100.0000 1 2854 1 chr1B.!!$R3 2853
1 TraesCS1B01G461400 chr1A 581304812 581305950 1138 True 794.5 1055 92.6530 889 1951 2 chr1A.!!$R1 1062
2 TraesCS1B01G461400 chr1A 577823851 577824444 593 False 486.0 486 81.9700 2228 2807 1 chr1A.!!$F2 579
3 TraesCS1B01G461400 chr5D 422034153 422034865 712 False 710.0 710 85.1180 2105 2801 1 chr5D.!!$F2 696
4 TraesCS1B01G461400 chr5D 73745620 73746315 695 False 678.0 678 84.7360 2123 2802 1 chr5D.!!$F1 679
5 TraesCS1B01G461400 chr2D 198429863 198430574 711 False 710.0 710 85.1390 2111 2808 1 chr2D.!!$F2 697
6 TraesCS1B01G461400 chr1D 400303322 400304023 701 True 706.0 706 85.3310 2116 2801 1 chr1D.!!$R1 685
7 TraesCS1B01G461400 chr1D 484193217 484193978 761 True 520.5 562 91.9085 1270 2107 2 chr1D.!!$R4 837
8 TraesCS1B01G461400 chr1D 469028927 469029650 723 False 494.0 494 79.9730 2106 2803 1 chr1D.!!$F1 697
9 TraesCS1B01G461400 chr4A 706494974 706495686 712 False 702.0 702 85.1960 2116 2798 1 chr4A.!!$F1 682
10 TraesCS1B01G461400 chr6D 422944457 422945159 702 False 686.0 686 84.7460 2116 2802 1 chr6D.!!$F1 686
11 TraesCS1B01G461400 chr3D 285171075 285171776 701 False 678.0 678 84.5830 2116 2801 1 chr3D.!!$F1 685
12 TraesCS1B01G461400 chr3D 582243407 582244108 701 False 678.0 678 84.5830 2116 2801 1 chr3D.!!$F2 685
13 TraesCS1B01G461400 chr3D 506876066 506876687 621 True 545.0 545 83.1500 2 611 1 chr3D.!!$R1 609
14 TraesCS1B01G461400 chr5B 411761418 411762118 700 True 643.0 643 83.6880 2114 2799 1 chr5B.!!$R1 685
15 TraesCS1B01G461400 chr5B 400079308 400080003 695 False 582.0 582 82.2780 2112 2802 1 chr5B.!!$F1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.107945 CAAGACTAGCAGGCCTCCAC 60.108 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2172 0.326238 AGCCCCCAACGAATAGAGGA 60.326 55.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.302375 CGATCCAGCAATCTCCAGG 57.698 57.895 0.00 0.00 0.00 4.45
42 43 4.699522 GCGCCCAAGGGAGTTCGT 62.700 66.667 9.92 0.00 37.40 3.85
44 45 2.747686 GCCCAAGGGAGTTCGTCA 59.252 61.111 9.92 0.00 37.50 4.35
46 47 1.376037 CCCAAGGGAGTTCGTCAGC 60.376 63.158 0.00 0.00 37.50 4.26
47 48 1.371183 CCAAGGGAGTTCGTCAGCA 59.629 57.895 0.00 0.00 0.00 4.41
71 72 3.524648 TTCCGGAACACGCCACTCC 62.525 63.158 14.35 0.00 42.52 3.85
83 84 2.752358 CACTCCAGGCCAGAAGCA 59.248 61.111 5.01 0.00 46.50 3.91
86 87 1.078567 CTCCAGGCCAGAAGCAGAC 60.079 63.158 5.01 0.00 46.50 3.51
94 95 1.609061 GCCAGAAGCAGACAGTAAGCA 60.609 52.381 0.02 0.00 42.97 3.91
98 99 3.864583 CAGAAGCAGACAGTAAGCAGATC 59.135 47.826 0.02 0.00 0.00 2.75
101 102 4.550076 AGCAGACAGTAAGCAGATCTTT 57.450 40.909 0.00 0.00 36.25 2.52
104 105 4.092675 GCAGACAGTAAGCAGATCTTTGTC 59.907 45.833 0.00 1.26 40.40 3.18
113 114 2.227388 GCAGATCTTTGTCTTGGTGTGG 59.773 50.000 0.00 0.00 0.00 4.17
130 131 3.916184 GGAGAAACCCCAGGACCA 58.084 61.111 0.00 0.00 0.00 4.02
159 160 0.970937 TACGCAAGACTAGCAGGCCT 60.971 55.000 0.00 0.00 43.62 5.19
163 164 0.107945 CAAGACTAGCAGGCCTCCAC 60.108 60.000 0.00 0.00 0.00 4.02
196 197 0.321564 TTCCAGCGGGACAACATCAG 60.322 55.000 4.56 0.00 44.89 2.90
209 210 0.540923 ACATCAGAGAAGAGGGCAGC 59.459 55.000 0.00 0.00 0.00 5.25
212 213 1.078567 CAGAGAAGAGGGCAGCACC 60.079 63.158 0.00 0.00 37.93 5.01
241 242 2.876091 CTTCATAGAGACGGCGAACAA 58.124 47.619 16.62 0.00 0.00 2.83
243 244 1.135199 TCATAGAGACGGCGAACAACC 60.135 52.381 16.62 1.31 0.00 3.77
254 255 1.442769 CGAACAACCAGATCCCACAG 58.557 55.000 0.00 0.00 0.00 3.66
263 264 4.052518 ATCCCACAGCACCTGCCC 62.053 66.667 0.00 0.00 43.38 5.36
288 289 3.207265 TGGGTCAATTGGTCCATATCG 57.793 47.619 17.63 0.00 0.00 2.92
293 294 4.881850 GGTCAATTGGTCCATATCGAAGTT 59.118 41.667 5.42 0.00 0.00 2.66
305 306 0.894184 TCGAAGTTCACGAGAGGCCT 60.894 55.000 3.86 3.86 34.85 5.19
308 309 2.093106 GAAGTTCACGAGAGGCCTAGA 58.907 52.381 4.42 0.00 0.00 2.43
309 310 2.445682 AGTTCACGAGAGGCCTAGAT 57.554 50.000 4.42 0.00 0.00 1.98
310 311 2.303175 AGTTCACGAGAGGCCTAGATC 58.697 52.381 4.42 3.25 0.00 2.75
311 312 1.002251 GTTCACGAGAGGCCTAGATCG 60.002 57.143 25.08 25.08 40.86 3.69
312 313 0.468648 TCACGAGAGGCCTAGATCGA 59.531 55.000 30.52 13.85 38.50 3.59
313 314 1.072489 TCACGAGAGGCCTAGATCGAT 59.928 52.381 30.52 17.34 38.50 3.59
314 315 1.198867 CACGAGAGGCCTAGATCGATG 59.801 57.143 30.52 22.32 38.50 3.84
315 316 0.170116 CGAGAGGCCTAGATCGATGC 59.830 60.000 23.38 0.00 37.35 3.91
316 317 0.530288 GAGAGGCCTAGATCGATGCC 59.470 60.000 4.42 14.93 44.35 4.40
317 318 0.902516 AGAGGCCTAGATCGATGCCC 60.903 60.000 18.14 11.25 45.14 5.36
318 319 1.152247 AGGCCTAGATCGATGCCCA 60.152 57.895 18.14 0.00 45.14 5.36
319 320 0.546267 AGGCCTAGATCGATGCCCAT 60.546 55.000 18.14 1.40 45.14 4.00
349 350 2.474612 AAACGCCCACCAACGTGAC 61.475 57.895 0.00 0.00 43.14 3.67
355 356 2.248835 CCACCAACGTGACCGGAAC 61.249 63.158 9.46 5.02 43.14 3.62
409 410 1.333636 CCTCCCGCTGAAGGACATCT 61.334 60.000 0.00 0.00 0.00 2.90
410 411 1.403814 CTCCCGCTGAAGGACATCTA 58.596 55.000 0.00 0.00 0.00 1.98
417 418 1.048724 TGAAGGACATCTAGCCCCGG 61.049 60.000 0.00 0.00 0.00 5.73
419 420 3.942439 GGACATCTAGCCCCGGCC 61.942 72.222 1.02 0.00 43.17 6.13
453 454 4.069232 CTTGCCCTCCGACTGCGA 62.069 66.667 0.00 0.00 40.82 5.10
471 472 0.914417 GACCCACCTCCTCCCATGAA 60.914 60.000 0.00 0.00 0.00 2.57
472 473 0.916358 ACCCACCTCCTCCCATGAAG 60.916 60.000 0.00 0.00 0.00 3.02
477 478 4.161295 TCCTCCCATGAAGCGCCG 62.161 66.667 2.29 0.00 0.00 6.46
478 479 4.473520 CCTCCCATGAAGCGCCGT 62.474 66.667 2.29 0.00 0.00 5.68
479 480 2.499205 CTCCCATGAAGCGCCGTA 59.501 61.111 2.29 0.00 0.00 4.02
490 491 3.506096 CGCCGTAGAGAGCACCGA 61.506 66.667 0.00 0.00 0.00 4.69
551 575 2.671070 CCAGGGATCACGGCTTGT 59.329 61.111 0.00 0.00 0.00 3.16
567 591 3.586892 GCTTGTGTGTAGACTAGGGTTC 58.413 50.000 0.00 0.00 0.00 3.62
612 637 4.541648 GGGAGGGGAGCGGCTCTA 62.542 72.222 27.47 0.00 0.00 2.43
613 638 2.444140 GGAGGGGAGCGGCTCTAA 60.444 66.667 27.47 0.00 0.00 2.10
614 639 2.503382 GGAGGGGAGCGGCTCTAAG 61.503 68.421 27.47 0.00 0.00 2.18
615 640 1.758906 GAGGGGAGCGGCTCTAAGT 60.759 63.158 27.47 11.47 0.00 2.24
616 641 0.467659 GAGGGGAGCGGCTCTAAGTA 60.468 60.000 27.47 0.00 0.00 2.24
617 642 0.188834 AGGGGAGCGGCTCTAAGTAT 59.811 55.000 27.47 7.29 0.00 2.12
618 643 1.428139 AGGGGAGCGGCTCTAAGTATA 59.572 52.381 27.47 0.00 0.00 1.47
619 644 2.043252 AGGGGAGCGGCTCTAAGTATAT 59.957 50.000 27.47 4.86 0.00 0.86
620 645 3.268856 AGGGGAGCGGCTCTAAGTATATA 59.731 47.826 27.47 0.00 0.00 0.86
621 646 4.021916 GGGGAGCGGCTCTAAGTATATAA 58.978 47.826 27.47 0.00 0.00 0.98
622 647 4.465305 GGGGAGCGGCTCTAAGTATATAAA 59.535 45.833 27.47 0.00 0.00 1.40
623 648 5.394333 GGGGAGCGGCTCTAAGTATATAAAG 60.394 48.000 27.47 0.00 0.00 1.85
624 649 5.418209 GGGAGCGGCTCTAAGTATATAAAGA 59.582 44.000 27.47 0.00 0.00 2.52
625 650 6.071503 GGGAGCGGCTCTAAGTATATAAAGAA 60.072 42.308 27.47 0.00 0.00 2.52
626 651 6.807720 GGAGCGGCTCTAAGTATATAAAGAAC 59.192 42.308 27.47 2.86 0.00 3.01
627 652 7.286215 AGCGGCTCTAAGTATATAAAGAACA 57.714 36.000 0.00 0.00 0.00 3.18
628 653 7.371936 AGCGGCTCTAAGTATATAAAGAACAG 58.628 38.462 0.00 0.00 0.00 3.16
629 654 7.014422 AGCGGCTCTAAGTATATAAAGAACAGT 59.986 37.037 0.00 0.00 0.00 3.55
630 655 7.652507 GCGGCTCTAAGTATATAAAGAACAGTT 59.347 37.037 0.00 0.00 0.00 3.16
631 656 9.530633 CGGCTCTAAGTATATAAAGAACAGTTT 57.469 33.333 0.00 0.00 0.00 2.66
665 690 8.619146 CACATTTAGTTGTGCCATAAGTATTG 57.381 34.615 0.00 0.00 40.45 1.90
666 691 7.220683 CACATTTAGTTGTGCCATAAGTATTGC 59.779 37.037 0.00 0.00 40.45 3.56
667 692 6.825944 TTTAGTTGTGCCATAAGTATTGCA 57.174 33.333 0.00 0.00 32.69 4.08
671 696 3.971032 GTGCCATAAGTATTGCACCTC 57.029 47.619 13.82 0.00 44.77 3.85
672 697 3.545703 GTGCCATAAGTATTGCACCTCT 58.454 45.455 13.82 0.00 44.77 3.69
673 698 4.703897 GTGCCATAAGTATTGCACCTCTA 58.296 43.478 13.82 0.00 44.77 2.43
674 699 5.123227 GTGCCATAAGTATTGCACCTCTAA 58.877 41.667 13.82 0.00 44.77 2.10
675 700 5.588648 GTGCCATAAGTATTGCACCTCTAAA 59.411 40.000 13.82 0.00 44.77 1.85
676 701 6.263168 GTGCCATAAGTATTGCACCTCTAAAT 59.737 38.462 13.82 0.00 44.77 1.40
677 702 6.833416 TGCCATAAGTATTGCACCTCTAAATT 59.167 34.615 0.00 0.00 30.49 1.82
678 703 7.013274 TGCCATAAGTATTGCACCTCTAAATTC 59.987 37.037 0.00 0.00 30.49 2.17
679 704 7.576236 CCATAAGTATTGCACCTCTAAATTCG 58.424 38.462 0.00 0.00 0.00 3.34
680 705 7.441157 CCATAAGTATTGCACCTCTAAATTCGA 59.559 37.037 0.00 0.00 0.00 3.71
681 706 8.993121 CATAAGTATTGCACCTCTAAATTCGAT 58.007 33.333 0.00 0.00 0.00 3.59
684 709 8.764524 AGTATTGCACCTCTAAATTCGATATC 57.235 34.615 0.00 0.00 0.00 1.63
685 710 8.367911 AGTATTGCACCTCTAAATTCGATATCA 58.632 33.333 3.12 0.00 0.00 2.15
686 711 9.155975 GTATTGCACCTCTAAATTCGATATCAT 57.844 33.333 3.12 0.00 0.00 2.45
687 712 8.627208 ATTGCACCTCTAAATTCGATATCATT 57.373 30.769 3.12 0.00 0.00 2.57
688 713 9.725019 ATTGCACCTCTAAATTCGATATCATTA 57.275 29.630 3.12 0.00 0.00 1.90
689 714 9.554395 TTGCACCTCTAAATTCGATATCATTAA 57.446 29.630 3.12 0.00 0.00 1.40
690 715 9.725019 TGCACCTCTAAATTCGATATCATTAAT 57.275 29.630 3.12 0.00 0.00 1.40
711 736 9.787532 ATTAATTTTATGTCAAGATTCGTGTGG 57.212 29.630 0.00 0.00 0.00 4.17
712 737 7.447374 AATTTTATGTCAAGATTCGTGTGGA 57.553 32.000 0.00 0.00 0.00 4.02
713 738 7.630242 ATTTTATGTCAAGATTCGTGTGGAT 57.370 32.000 0.00 0.00 0.00 3.41
714 739 8.731275 ATTTTATGTCAAGATTCGTGTGGATA 57.269 30.769 0.00 0.00 0.00 2.59
715 740 8.554835 TTTTATGTCAAGATTCGTGTGGATAA 57.445 30.769 0.00 0.10 0.00 1.75
716 741 8.731275 TTTATGTCAAGATTCGTGTGGATAAT 57.269 30.769 0.00 0.00 0.00 1.28
717 742 9.825109 TTTATGTCAAGATTCGTGTGGATAATA 57.175 29.630 0.00 0.00 0.00 0.98
718 743 9.996554 TTATGTCAAGATTCGTGTGGATAATAT 57.003 29.630 0.00 0.00 0.00 1.28
719 744 8.908786 ATGTCAAGATTCGTGTGGATAATATT 57.091 30.769 0.00 0.00 0.00 1.28
720 745 8.731275 TGTCAAGATTCGTGTGGATAATATTT 57.269 30.769 0.00 0.00 0.00 1.40
721 746 9.173021 TGTCAAGATTCGTGTGGATAATATTTT 57.827 29.630 0.00 0.00 0.00 1.82
743 768 7.539034 TTTTTCTCTTTTCCCCCTCTTTATG 57.461 36.000 0.00 0.00 0.00 1.90
744 769 5.860648 TTCTCTTTTCCCCCTCTTTATGT 57.139 39.130 0.00 0.00 0.00 2.29
745 770 5.860648 TCTCTTTTCCCCCTCTTTATGTT 57.139 39.130 0.00 0.00 0.00 2.71
746 771 6.214177 TCTCTTTTCCCCCTCTTTATGTTT 57.786 37.500 0.00 0.00 0.00 2.83
747 772 6.010219 TCTCTTTTCCCCCTCTTTATGTTTG 58.990 40.000 0.00 0.00 0.00 2.93
748 773 5.959512 TCTTTTCCCCCTCTTTATGTTTGA 58.040 37.500 0.00 0.00 0.00 2.69
749 774 6.561294 TCTTTTCCCCCTCTTTATGTTTGAT 58.439 36.000 0.00 0.00 0.00 2.57
750 775 7.016296 TCTTTTCCCCCTCTTTATGTTTGATT 58.984 34.615 0.00 0.00 0.00 2.57
751 776 6.850752 TTTCCCCCTCTTTATGTTTGATTC 57.149 37.500 0.00 0.00 0.00 2.52
752 777 5.528600 TCCCCCTCTTTATGTTTGATTCA 57.471 39.130 0.00 0.00 0.00 2.57
753 778 5.261216 TCCCCCTCTTTATGTTTGATTCAC 58.739 41.667 0.00 0.00 0.00 3.18
754 779 5.015178 TCCCCCTCTTTATGTTTGATTCACT 59.985 40.000 0.00 0.00 0.00 3.41
755 780 5.716703 CCCCCTCTTTATGTTTGATTCACTT 59.283 40.000 0.00 0.00 0.00 3.16
756 781 6.889722 CCCCCTCTTTATGTTTGATTCACTTA 59.110 38.462 0.00 0.00 0.00 2.24
757 782 7.561356 CCCCCTCTTTATGTTTGATTCACTTAT 59.439 37.037 0.00 0.00 0.00 1.73
758 783 8.971073 CCCCTCTTTATGTTTGATTCACTTATT 58.029 33.333 0.00 0.00 0.00 1.40
799 824 3.754965 GCATATCTAAATGTGCCCTGGA 58.245 45.455 0.00 0.00 42.41 3.86
800 825 3.503748 GCATATCTAAATGTGCCCTGGAC 59.496 47.826 0.00 0.00 42.41 4.02
801 826 4.717877 CATATCTAAATGTGCCCTGGACA 58.282 43.478 0.00 0.00 0.00 4.02
802 827 2.489938 TCTAAATGTGCCCTGGACAC 57.510 50.000 6.15 6.15 38.55 3.67
806 831 3.884774 TGTGCCCTGGACACACCC 61.885 66.667 12.07 0.00 42.88 4.61
807 832 3.884774 GTGCCCTGGACACACCCA 61.885 66.667 8.37 0.00 37.96 4.51
808 833 3.099841 TGCCCTGGACACACCCAA 61.100 61.111 0.00 0.00 35.47 4.12
809 834 2.282462 GCCCTGGACACACCCAAG 60.282 66.667 0.00 0.00 35.47 3.61
810 835 2.829384 GCCCTGGACACACCCAAGA 61.829 63.158 0.00 0.00 35.47 3.02
811 836 2.078452 CCCTGGACACACCCAAGAT 58.922 57.895 0.00 0.00 35.47 2.40
812 837 1.285280 CCCTGGACACACCCAAGATA 58.715 55.000 0.00 0.00 35.47 1.98
813 838 1.633432 CCCTGGACACACCCAAGATAA 59.367 52.381 0.00 0.00 35.47 1.75
814 839 2.242196 CCCTGGACACACCCAAGATAAT 59.758 50.000 0.00 0.00 35.47 1.28
815 840 3.545703 CCTGGACACACCCAAGATAATC 58.454 50.000 0.00 0.00 35.47 1.75
816 841 3.054434 CCTGGACACACCCAAGATAATCA 60.054 47.826 0.00 0.00 35.47 2.57
817 842 4.194640 CTGGACACACCCAAGATAATCAG 58.805 47.826 0.00 0.00 35.47 2.90
818 843 2.945668 GGACACACCCAAGATAATCAGC 59.054 50.000 0.00 0.00 0.00 4.26
819 844 2.945668 GACACACCCAAGATAATCAGCC 59.054 50.000 0.00 0.00 0.00 4.85
820 845 2.578021 ACACACCCAAGATAATCAGCCT 59.422 45.455 0.00 0.00 0.00 4.58
821 846 3.780294 ACACACCCAAGATAATCAGCCTA 59.220 43.478 0.00 0.00 0.00 3.93
822 847 4.413520 ACACACCCAAGATAATCAGCCTAT 59.586 41.667 0.00 0.00 0.00 2.57
823 848 5.103940 ACACACCCAAGATAATCAGCCTATT 60.104 40.000 0.00 0.00 0.00 1.73
824 849 6.101150 ACACACCCAAGATAATCAGCCTATTA 59.899 38.462 0.00 0.00 0.00 0.98
825 850 6.428159 CACACCCAAGATAATCAGCCTATTAC 59.572 42.308 0.00 0.00 0.00 1.89
826 851 6.101150 ACACCCAAGATAATCAGCCTATTACA 59.899 38.462 0.00 0.00 0.00 2.41
827 852 7.170965 CACCCAAGATAATCAGCCTATTACAT 58.829 38.462 0.00 0.00 0.00 2.29
828 853 8.321353 CACCCAAGATAATCAGCCTATTACATA 58.679 37.037 0.00 0.00 0.00 2.29
829 854 9.062367 ACCCAAGATAATCAGCCTATTACATAT 57.938 33.333 0.00 0.00 0.00 1.78
830 855 9.553064 CCCAAGATAATCAGCCTATTACATATC 57.447 37.037 0.00 0.00 0.00 1.63
831 856 9.553064 CCAAGATAATCAGCCTATTACATATCC 57.447 37.037 0.00 0.00 0.00 2.59
838 863 7.946381 TCAGCCTATTACATATCCTACTCTG 57.054 40.000 0.00 0.00 0.00 3.35
839 864 7.471041 TCAGCCTATTACATATCCTACTCTGT 58.529 38.462 0.00 0.00 0.00 3.41
840 865 7.950684 TCAGCCTATTACATATCCTACTCTGTT 59.049 37.037 0.00 0.00 0.00 3.16
841 866 9.244292 CAGCCTATTACATATCCTACTCTGTTA 57.756 37.037 0.00 0.00 0.00 2.41
842 867 9.245481 AGCCTATTACATATCCTACTCTGTTAC 57.755 37.037 0.00 0.00 0.00 2.50
843 868 9.245481 GCCTATTACATATCCTACTCTGTTACT 57.755 37.037 0.00 0.00 0.00 2.24
855 880 9.265862 TCCTACTCTGTTACTAGTTAGAGTACT 57.734 37.037 25.12 0.00 45.77 2.73
867 892 8.519492 CTAGTTAGAGTACTAGTCGGACATAC 57.481 42.308 11.27 9.53 41.65 2.39
868 893 6.882656 AGTTAGAGTACTAGTCGGACATACA 58.117 40.000 11.27 0.00 0.00 2.29
869 894 6.760770 AGTTAGAGTACTAGTCGGACATACAC 59.239 42.308 11.27 8.34 0.00 2.90
870 895 4.450053 AGAGTACTAGTCGGACATACACC 58.550 47.826 11.27 6.32 0.00 4.16
871 896 4.163839 AGAGTACTAGTCGGACATACACCT 59.836 45.833 11.27 8.11 0.00 4.00
872 897 4.450053 AGTACTAGTCGGACATACACCTC 58.550 47.826 11.27 0.00 0.00 3.85
873 898 2.652590 ACTAGTCGGACATACACCTCC 58.347 52.381 11.27 0.00 0.00 4.30
877 902 3.826637 CGGACATACACCTCCGTTT 57.173 52.632 0.00 0.00 43.79 3.60
878 903 2.088950 CGGACATACACCTCCGTTTT 57.911 50.000 0.00 0.00 43.79 2.43
879 904 2.419667 CGGACATACACCTCCGTTTTT 58.580 47.619 0.00 0.00 43.79 1.94
880 905 3.587923 CGGACATACACCTCCGTTTTTA 58.412 45.455 0.00 0.00 43.79 1.52
881 906 3.615496 CGGACATACACCTCCGTTTTTAG 59.385 47.826 0.00 0.00 43.79 1.85
882 907 3.373130 GGACATACACCTCCGTTTTTAGC 59.627 47.826 0.00 0.00 0.00 3.09
883 908 4.251268 GACATACACCTCCGTTTTTAGCT 58.749 43.478 0.00 0.00 0.00 3.32
884 909 4.251268 ACATACACCTCCGTTTTTAGCTC 58.749 43.478 0.00 0.00 0.00 4.09
885 910 4.020485 ACATACACCTCCGTTTTTAGCTCT 60.020 41.667 0.00 0.00 0.00 4.09
886 911 2.767505 ACACCTCCGTTTTTAGCTCTG 58.232 47.619 0.00 0.00 0.00 3.35
887 912 2.367567 ACACCTCCGTTTTTAGCTCTGA 59.632 45.455 0.00 0.00 0.00 3.27
894 919 2.408704 CGTTTTTAGCTCTGAGGTGTCG 59.591 50.000 18.98 11.56 0.00 4.35
933 958 1.051812 CCAGCCGTGATAAGAGGGAT 58.948 55.000 0.00 0.00 0.00 3.85
936 961 0.959553 GCCGTGATAAGAGGGATCGA 59.040 55.000 0.00 0.00 0.00 3.59
982 1007 8.064222 CGAAGCAGAAACAATACATAAATCGAT 58.936 33.333 0.00 0.00 0.00 3.59
988 1013 6.861065 AACAATACATAAATCGATTCGCCT 57.139 33.333 11.83 0.00 0.00 5.52
1000 1026 4.000325 TCGATTCGCCTTTTGATTCAAGA 59.000 39.130 0.00 0.00 0.00 3.02
1001 1027 4.635765 TCGATTCGCCTTTTGATTCAAGAT 59.364 37.500 0.00 0.00 0.00 2.40
1012 1038 1.168407 ATTCAAGATGATGGCGGCGG 61.168 55.000 9.78 0.00 0.00 6.13
1065 1091 4.335647 CAGCGACCCCAGGCAGTT 62.336 66.667 0.00 0.00 0.00 3.16
1164 1190 2.026822 TGCCTGTTTTCCTCTCAGATCC 60.027 50.000 0.00 0.00 0.00 3.36
1202 1228 0.039165 GGCTGCAAAGACTTTTCCGG 60.039 55.000 0.50 0.00 0.00 5.14
1203 1229 0.664466 GCTGCAAAGACTTTTCCGGC 60.664 55.000 11.40 11.40 0.00 6.13
1267 1373 6.769822 CCTGATGGTATAAGATCTGCAACTTT 59.230 38.462 0.00 0.00 0.00 2.66
1268 1374 7.284034 CCTGATGGTATAAGATCTGCAACTTTT 59.716 37.037 0.00 2.35 0.00 2.27
1324 1430 4.641645 CCGCCAGCAACCCTGTGA 62.642 66.667 0.00 0.00 40.06 3.58
1364 1470 3.457625 CCCAGAGAGAGCATGGGCG 62.458 68.421 0.00 0.00 46.86 6.13
1400 1506 2.794282 CGAGATCGAGACCAAGAAGCAG 60.794 54.545 0.00 0.00 43.02 4.24
1487 1593 1.786937 TGGAGCTCCTCTTCCATCTC 58.213 55.000 32.28 2.75 36.82 2.75
1560 1666 5.759506 TCCGAAAGAATTTTAGTGCACAA 57.240 34.783 21.04 8.60 39.27 3.33
1564 1670 6.360681 CCGAAAGAATTTTAGTGCACAAAGAG 59.639 38.462 21.04 0.58 39.27 2.85
1569 1675 9.683069 AAGAATTTTAGTGCACAAAGAGTAATG 57.317 29.630 21.04 0.00 0.00 1.90
1571 1677 9.846248 GAATTTTAGTGCACAAAGAGTAATGAT 57.154 29.630 21.04 2.90 0.00 2.45
1574 1680 9.462174 TTTTAGTGCACAAAGAGTAATGATTTG 57.538 29.630 21.04 0.00 39.32 2.32
1575 1681 5.464168 AGTGCACAAAGAGTAATGATTTGC 58.536 37.500 21.04 0.00 37.42 3.68
1577 1683 5.570589 GTGCACAAAGAGTAATGATTTGCTC 59.429 40.000 13.17 2.54 42.85 4.26
1588 1699 5.573337 AATGATTTGCTCTCTTAGTTGGC 57.427 39.130 0.00 0.00 0.00 4.52
1775 1886 4.592778 TGTCTGCTATATGGAATGCCTACA 59.407 41.667 0.00 0.00 34.31 2.74
1800 1911 1.632920 TGGCCACTTGGATGTACATGA 59.367 47.619 14.43 0.00 37.39 3.07
1880 1991 5.595885 AGATTTCACTATGTCATGAGTCCG 58.404 41.667 0.00 0.00 0.00 4.79
1904 2015 8.823818 CCGGATATTGTAACTCGAGTAAATTTT 58.176 33.333 20.39 4.26 0.00 1.82
1928 2040 5.800941 TGTTAAAGTACACTTTTTGTTGGCG 59.199 36.000 12.28 0.00 43.07 5.69
1952 2064 6.348458 CGAAATGTCAAGGAATTGCACTTCTA 60.348 38.462 15.47 0.00 0.00 2.10
1953 2065 7.472334 AAATGTCAAGGAATTGCACTTCTAT 57.528 32.000 15.47 3.50 0.00 1.98
1987 2101 1.831580 ATTTCAGGAGGCTGCACTTC 58.168 50.000 9.23 0.00 0.00 3.01
1994 2108 1.003696 GGAGGCTGCACTTCCTAAACT 59.996 52.381 0.00 0.00 31.71 2.66
2002 2116 2.226674 GCACTTCCTAAACTGCAGTTCC 59.773 50.000 31.20 8.54 37.25 3.62
2010 2124 4.518970 CCTAAACTGCAGTTCCTTTAGCAA 59.481 41.667 31.20 8.51 37.25 3.91
2038 2153 2.903375 ATAAACCGCCCCCTTTACAA 57.097 45.000 0.00 0.00 0.00 2.41
2054 2170 6.258947 CCCTTTACAACTTCTCTATAAGCTGC 59.741 42.308 0.00 0.00 0.00 5.25
2056 2172 6.546428 TTACAACTTCTCTATAAGCTGCCT 57.454 37.500 0.00 0.00 0.00 4.75
2060 2176 3.895041 ACTTCTCTATAAGCTGCCTCCTC 59.105 47.826 0.00 0.00 0.00 3.71
2061 2177 3.893753 TCTCTATAAGCTGCCTCCTCT 57.106 47.619 0.00 0.00 0.00 3.69
2080 2196 4.322801 CCTCTATTCGTTGGGGGCTTATAG 60.323 50.000 0.00 0.00 0.00 1.31
2107 2223 9.021863 GCTAGTTATGCGATAATTAGTCCATAC 57.978 37.037 14.15 0.00 37.37 2.39
2108 2224 9.517609 CTAGTTATGCGATAATTAGTCCATACC 57.482 37.037 0.00 0.00 33.12 2.73
2109 2225 7.033791 AGTTATGCGATAATTAGTCCATACCG 58.966 38.462 0.00 0.00 0.00 4.02
2212 2333 5.635700 ACTCGAAAAGAAATGAGCTGAGTAC 59.364 40.000 0.00 0.00 32.81 2.73
2213 2334 5.538118 TCGAAAAGAAATGAGCTGAGTACA 58.462 37.500 0.00 0.00 0.00 2.90
2237 2358 4.878397 AGCACTTTATGTAGCTTGATGGAC 59.122 41.667 0.00 0.00 32.11 4.02
2255 2376 3.067106 GGACAAACGAGCTGATCTTGAA 58.933 45.455 0.00 0.00 0.00 2.69
2357 2481 9.830975 TTACGAAGAATTAGGATCATTCATTGA 57.169 29.630 6.94 0.00 39.12 2.57
2418 2557 4.201841 GCAAACATGGAAATTAAGCATGGC 60.202 41.667 0.00 0.00 0.00 4.40
2439 2591 2.083774 CAATATGACACGTGGCCAACT 58.916 47.619 21.02 3.37 0.00 3.16
2454 2606 3.119495 GGCCAACTGTGTGTTCAATATCC 60.119 47.826 0.00 0.00 36.63 2.59
2596 2753 6.801539 TTAGTTGTGGTCTATCTTGCTTTG 57.198 37.500 0.00 0.00 0.00 2.77
2684 2855 0.033920 ATCGTGACAAGCTGAGCACA 59.966 50.000 7.39 0.00 0.00 4.57
2685 2856 0.598419 TCGTGACAAGCTGAGCACAG 60.598 55.000 7.39 6.80 45.91 3.66
2711 2882 4.816385 CACTTTCTACAGCTCAACCTTGAA 59.184 41.667 0.00 0.00 36.64 2.69
2730 2901 3.066621 TGAACTTCGCACATTTTGAGCTT 59.933 39.130 0.00 0.00 31.68 3.74
2787 2958 1.128136 CAACTCGCTCGAACTCGACTA 59.872 52.381 0.00 0.00 44.22 2.59
2808 2979 3.583882 TTGCAGCCCTAGCCCCAAC 62.584 63.158 0.00 0.00 41.25 3.77
2812 2983 4.506255 GCCCTAGCCCCAACGCAT 62.506 66.667 0.00 0.00 0.00 4.73
2813 2984 3.114825 GCCCTAGCCCCAACGCATA 62.115 63.158 0.00 0.00 0.00 3.14
2814 2985 1.071471 CCCTAGCCCCAACGCATAG 59.929 63.158 0.00 0.00 0.00 2.23
2815 2986 1.696097 CCCTAGCCCCAACGCATAGT 61.696 60.000 0.00 0.00 0.00 2.12
2816 2987 0.532862 CCTAGCCCCAACGCATAGTG 60.533 60.000 0.00 0.00 0.00 2.74
2817 2988 0.464036 CTAGCCCCAACGCATAGTGA 59.536 55.000 0.00 0.00 0.00 3.41
2818 2989 0.906066 TAGCCCCAACGCATAGTGAA 59.094 50.000 0.00 0.00 0.00 3.18
2819 2990 0.392998 AGCCCCAACGCATAGTGAAG 60.393 55.000 0.00 0.00 0.00 3.02
2820 2991 1.376609 GCCCCAACGCATAGTGAAGG 61.377 60.000 0.00 0.00 0.00 3.46
2821 2992 1.376609 CCCCAACGCATAGTGAAGGC 61.377 60.000 0.00 0.00 0.00 4.35
2825 2996 2.202932 CGCATAGTGAAGGCGGCT 60.203 61.111 5.25 5.25 46.46 5.52
2826 2997 1.815421 CGCATAGTGAAGGCGGCTT 60.815 57.895 25.83 25.83 46.46 4.35
2827 2998 0.529773 CGCATAGTGAAGGCGGCTTA 60.530 55.000 25.59 9.50 46.46 3.09
2828 2999 1.873903 CGCATAGTGAAGGCGGCTTAT 60.874 52.381 25.59 15.63 46.46 1.73
2829 3000 1.532868 GCATAGTGAAGGCGGCTTATG 59.467 52.381 25.59 23.17 0.00 1.90
2830 3001 2.146342 CATAGTGAAGGCGGCTTATGG 58.854 52.381 25.59 7.49 0.00 2.74
2831 3002 0.468226 TAGTGAAGGCGGCTTATGGG 59.532 55.000 25.59 0.00 0.00 4.00
2832 3003 1.223487 GTGAAGGCGGCTTATGGGA 59.777 57.895 25.59 3.55 0.00 4.37
2833 3004 0.815615 GTGAAGGCGGCTTATGGGAG 60.816 60.000 25.59 0.00 0.00 4.30
2834 3005 0.980754 TGAAGGCGGCTTATGGGAGA 60.981 55.000 25.59 0.00 0.00 3.71
2835 3006 0.180406 GAAGGCGGCTTATGGGAGAA 59.820 55.000 25.59 0.00 0.00 2.87
2836 3007 0.181350 AAGGCGGCTTATGGGAGAAG 59.819 55.000 24.31 0.00 0.00 2.85
2838 3009 1.147153 GCGGCTTATGGGAGAAGCT 59.853 57.895 7.26 0.00 46.93 3.74
2839 3010 0.464554 GCGGCTTATGGGAGAAGCTT 60.465 55.000 0.00 0.00 46.93 3.74
2840 3011 2.019156 GCGGCTTATGGGAGAAGCTTT 61.019 52.381 0.00 0.00 46.93 3.51
2841 3012 2.369394 CGGCTTATGGGAGAAGCTTTT 58.631 47.619 0.00 0.00 46.93 2.27
2842 3013 2.098117 CGGCTTATGGGAGAAGCTTTTG 59.902 50.000 0.00 0.00 46.93 2.44
2843 3014 3.356290 GGCTTATGGGAGAAGCTTTTGA 58.644 45.455 0.00 0.00 46.93 2.69
2844 3015 3.763897 GGCTTATGGGAGAAGCTTTTGAA 59.236 43.478 0.00 0.00 46.93 2.69
2845 3016 4.142293 GGCTTATGGGAGAAGCTTTTGAAG 60.142 45.833 0.00 0.00 46.93 3.02
2846 3017 4.142293 GCTTATGGGAGAAGCTTTTGAAGG 60.142 45.833 0.00 0.00 44.83 3.46
2847 3018 2.292828 TGGGAGAAGCTTTTGAAGGG 57.707 50.000 0.00 0.00 0.00 3.95
2848 3019 1.203050 TGGGAGAAGCTTTTGAAGGGG 60.203 52.381 0.00 0.00 0.00 4.79
2849 3020 1.550327 GGAGAAGCTTTTGAAGGGGG 58.450 55.000 0.00 0.00 0.00 5.40
2850 3021 1.203063 GGAGAAGCTTTTGAAGGGGGT 60.203 52.381 0.00 0.00 0.00 4.95
2851 3022 2.598565 GAGAAGCTTTTGAAGGGGGTT 58.401 47.619 0.00 0.00 0.00 4.11
2852 3023 2.297315 GAGAAGCTTTTGAAGGGGGTTG 59.703 50.000 0.00 0.00 0.00 3.77
2853 3024 0.758734 AAGCTTTTGAAGGGGGTTGC 59.241 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.883814 GCCTGGAGATTGCTGGATCG 60.884 60.000 0.00 0.00 0.00 3.69
67 68 1.537397 TCTGCTTCTGGCCTGGAGT 60.537 57.895 18.52 0.00 40.92 3.85
71 72 0.610174 TACTGTCTGCTTCTGGCCTG 59.390 55.000 3.32 2.92 40.92 4.85
83 84 5.736951 AGACAAAGATCTGCTTACTGTCT 57.263 39.130 0.00 5.63 44.23 3.41
86 87 4.999950 ACCAAGACAAAGATCTGCTTACTG 59.000 41.667 0.00 0.00 35.24 2.74
94 95 2.711009 TCCCACACCAAGACAAAGATCT 59.289 45.455 0.00 0.00 0.00 2.75
98 99 2.638480 TCTCCCACACCAAGACAAAG 57.362 50.000 0.00 0.00 0.00 2.77
101 102 1.133915 GGTTTCTCCCACACCAAGACA 60.134 52.381 0.00 0.00 0.00 3.41
113 114 1.379146 GTGGTCCTGGGGTTTCTCC 59.621 63.158 0.00 0.00 0.00 3.71
130 131 4.202131 GCTAGTCTTGCGTATAAAGGAGGT 60.202 45.833 0.00 0.00 0.00 3.85
136 137 3.454375 GCCTGCTAGTCTTGCGTATAAA 58.546 45.455 1.81 0.00 0.00 1.40
143 144 1.153269 GGAGGCCTGCTAGTCTTGC 60.153 63.158 18.47 0.00 0.00 4.01
163 164 4.821589 GGAAGGCGACTGGAGGCG 62.822 72.222 0.00 0.00 42.68 5.52
177 178 0.321564 CTGATGTTGTCCCGCTGGAA 60.322 55.000 0.00 0.00 44.07 3.53
185 186 2.679349 GCCCTCTTCTCTGATGTTGTCC 60.679 54.545 0.00 0.00 0.00 4.02
189 190 1.065564 GCTGCCCTCTTCTCTGATGTT 60.066 52.381 0.00 0.00 0.00 2.71
196 197 2.125350 CGGTGCTGCCCTCTTCTC 60.125 66.667 0.00 0.00 0.00 2.87
212 213 0.179137 TCTCTATGAAGCCGTGCACG 60.179 55.000 31.77 31.77 39.44 5.34
226 227 0.242825 CTGGTTGTTCGCCGTCTCTA 59.757 55.000 0.00 0.00 0.00 2.43
227 228 1.006102 CTGGTTGTTCGCCGTCTCT 60.006 57.895 0.00 0.00 0.00 3.10
241 242 1.539869 AGGTGCTGTGGGATCTGGT 60.540 57.895 0.00 0.00 0.00 4.00
243 244 1.748122 GCAGGTGCTGTGGGATCTG 60.748 63.158 0.00 0.00 43.56 2.90
263 264 0.596082 GGACCAATTGACCCAACGTG 59.404 55.000 7.12 0.00 0.00 4.49
265 266 1.544724 ATGGACCAATTGACCCAACG 58.455 50.000 18.35 0.00 31.77 4.10
288 289 2.093106 TCTAGGCCTCTCGTGAACTTC 58.907 52.381 9.68 0.00 0.00 3.01
293 294 0.468648 TCGATCTAGGCCTCTCGTGA 59.531 55.000 23.64 11.24 33.10 4.35
305 306 3.979101 TGCAATATGGGCATCGATCTA 57.021 42.857 0.00 0.00 36.11 1.98
308 309 2.297033 GGTTTGCAATATGGGCATCGAT 59.703 45.455 0.00 0.00 41.58 3.59
309 310 1.680735 GGTTTGCAATATGGGCATCGA 59.319 47.619 0.00 0.00 41.58 3.59
310 311 1.269726 GGGTTTGCAATATGGGCATCG 60.270 52.381 0.00 0.00 41.58 3.84
311 312 1.761784 TGGGTTTGCAATATGGGCATC 59.238 47.619 0.00 1.51 41.58 3.91
312 313 1.876849 TGGGTTTGCAATATGGGCAT 58.123 45.000 0.00 0.00 41.58 4.40
313 314 1.649321 TTGGGTTTGCAATATGGGCA 58.351 45.000 0.00 0.00 40.00 5.36
314 315 2.355197 GTTTGGGTTTGCAATATGGGC 58.645 47.619 0.00 0.00 0.00 5.36
315 316 2.615869 CGTTTGGGTTTGCAATATGGG 58.384 47.619 0.00 0.00 0.00 4.00
316 317 1.999024 GCGTTTGGGTTTGCAATATGG 59.001 47.619 0.00 0.00 0.00 2.74
317 318 1.999024 GGCGTTTGGGTTTGCAATATG 59.001 47.619 0.00 0.00 0.00 1.78
318 319 1.066502 GGGCGTTTGGGTTTGCAATAT 60.067 47.619 0.00 0.00 0.00 1.28
319 320 0.318762 GGGCGTTTGGGTTTGCAATA 59.681 50.000 0.00 0.00 0.00 1.90
377 378 2.046217 GGAGGGCGGTGAGGAAAC 60.046 66.667 0.00 0.00 0.00 2.78
433 434 3.322466 CAGTCGGAGGGCAAGGGT 61.322 66.667 0.00 0.00 0.00 4.34
447 448 2.997897 GAGGAGGTGGGTCGCAGT 60.998 66.667 0.00 0.00 0.00 4.40
453 454 0.916358 CTTCATGGGAGGAGGTGGGT 60.916 60.000 0.00 0.00 0.00 4.51
471 472 3.827898 GGTGCTCTCTACGGCGCT 61.828 66.667 6.90 0.00 38.76 5.92
477 478 1.139947 GCCAGTCGGTGCTCTCTAC 59.860 63.158 0.00 0.00 33.28 2.59
478 479 2.407428 CGCCAGTCGGTGCTCTCTA 61.407 63.158 0.00 0.00 35.59 2.43
479 480 3.753434 CGCCAGTCGGTGCTCTCT 61.753 66.667 0.00 0.00 35.59 3.10
543 567 1.544691 CCTAGTCTACACACAAGCCGT 59.455 52.381 0.00 0.00 0.00 5.68
545 569 1.900486 ACCCTAGTCTACACACAAGCC 59.100 52.381 0.00 0.00 0.00 4.35
551 575 1.617804 CCCCGAACCCTAGTCTACACA 60.618 57.143 0.00 0.00 0.00 3.72
596 621 2.444140 TTAGAGCCGCTCCCCTCC 60.444 66.667 16.99 0.00 0.00 4.30
652 677 3.931907 AGAGGTGCAATACTTATGGCA 57.068 42.857 0.00 0.00 40.19 4.92
653 678 6.884280 ATTTAGAGGTGCAATACTTATGGC 57.116 37.500 0.00 0.00 33.16 4.40
654 679 7.441157 TCGAATTTAGAGGTGCAATACTTATGG 59.559 37.037 0.00 0.00 0.00 2.74
655 680 8.365399 TCGAATTTAGAGGTGCAATACTTATG 57.635 34.615 0.00 0.00 0.00 1.90
658 683 9.209175 GATATCGAATTTAGAGGTGCAATACTT 57.791 33.333 0.00 0.00 0.00 2.24
659 684 8.367911 TGATATCGAATTTAGAGGTGCAATACT 58.632 33.333 0.00 0.00 0.00 2.12
660 685 8.534333 TGATATCGAATTTAGAGGTGCAATAC 57.466 34.615 0.00 0.00 0.00 1.89
661 686 9.725019 AATGATATCGAATTTAGAGGTGCAATA 57.275 29.630 0.00 0.00 0.00 1.90
662 687 8.627208 AATGATATCGAATTTAGAGGTGCAAT 57.373 30.769 0.00 0.00 0.00 3.56
663 688 9.554395 TTAATGATATCGAATTTAGAGGTGCAA 57.446 29.630 0.00 0.00 0.00 4.08
664 689 9.725019 ATTAATGATATCGAATTTAGAGGTGCA 57.275 29.630 0.00 0.00 0.00 4.57
685 710 9.787532 CCACACGAATCTTGACATAAAATTAAT 57.212 29.630 0.00 0.00 0.00 1.40
686 711 9.004717 TCCACACGAATCTTGACATAAAATTAA 57.995 29.630 0.00 0.00 0.00 1.40
687 712 8.554835 TCCACACGAATCTTGACATAAAATTA 57.445 30.769 0.00 0.00 0.00 1.40
688 713 7.447374 TCCACACGAATCTTGACATAAAATT 57.553 32.000 0.00 0.00 0.00 1.82
689 714 7.630242 ATCCACACGAATCTTGACATAAAAT 57.370 32.000 0.00 0.00 0.00 1.82
690 715 8.554835 TTATCCACACGAATCTTGACATAAAA 57.445 30.769 0.00 0.00 0.00 1.52
691 716 8.731275 ATTATCCACACGAATCTTGACATAAA 57.269 30.769 0.00 0.00 0.00 1.40
692 717 9.996554 ATATTATCCACACGAATCTTGACATAA 57.003 29.630 0.00 0.00 0.00 1.90
693 718 9.996554 AATATTATCCACACGAATCTTGACATA 57.003 29.630 0.00 0.00 0.00 2.29
694 719 8.908786 AATATTATCCACACGAATCTTGACAT 57.091 30.769 0.00 0.00 0.00 3.06
695 720 8.731275 AAATATTATCCACACGAATCTTGACA 57.269 30.769 0.00 0.00 0.00 3.58
719 744 7.073208 ACATAAAGAGGGGGAAAAGAGAAAAA 58.927 34.615 0.00 0.00 0.00 1.94
720 745 6.620429 ACATAAAGAGGGGGAAAAGAGAAAA 58.380 36.000 0.00 0.00 0.00 2.29
721 746 6.214177 ACATAAAGAGGGGGAAAAGAGAAA 57.786 37.500 0.00 0.00 0.00 2.52
722 747 5.860648 ACATAAAGAGGGGGAAAAGAGAA 57.139 39.130 0.00 0.00 0.00 2.87
723 748 5.860648 AACATAAAGAGGGGGAAAAGAGA 57.139 39.130 0.00 0.00 0.00 3.10
724 749 6.010219 TCAAACATAAAGAGGGGGAAAAGAG 58.990 40.000 0.00 0.00 0.00 2.85
725 750 5.959512 TCAAACATAAAGAGGGGGAAAAGA 58.040 37.500 0.00 0.00 0.00 2.52
726 751 6.857437 ATCAAACATAAAGAGGGGGAAAAG 57.143 37.500 0.00 0.00 0.00 2.27
727 752 6.784969 TGAATCAAACATAAAGAGGGGGAAAA 59.215 34.615 0.00 0.00 0.00 2.29
728 753 6.210584 GTGAATCAAACATAAAGAGGGGGAAA 59.789 38.462 0.00 0.00 0.00 3.13
729 754 5.714806 GTGAATCAAACATAAAGAGGGGGAA 59.285 40.000 0.00 0.00 0.00 3.97
730 755 5.015178 AGTGAATCAAACATAAAGAGGGGGA 59.985 40.000 0.00 0.00 0.00 4.81
731 756 5.264395 AGTGAATCAAACATAAAGAGGGGG 58.736 41.667 0.00 0.00 0.00 5.40
732 757 6.840780 AAGTGAATCAAACATAAAGAGGGG 57.159 37.500 0.00 0.00 0.00 4.79
769 794 9.014297 GGGCACATTTAGATATGCTTTACTTAT 57.986 33.333 0.00 0.00 35.98 1.73
770 795 8.217799 AGGGCACATTTAGATATGCTTTACTTA 58.782 33.333 0.00 0.00 35.98 2.24
771 796 7.013655 CAGGGCACATTTAGATATGCTTTACTT 59.986 37.037 0.00 0.00 35.98 2.24
772 797 6.488006 CAGGGCACATTTAGATATGCTTTACT 59.512 38.462 0.00 0.00 35.98 2.24
773 798 6.294176 CCAGGGCACATTTAGATATGCTTTAC 60.294 42.308 0.00 0.00 35.98 2.01
774 799 5.769662 CCAGGGCACATTTAGATATGCTTTA 59.230 40.000 0.00 0.00 35.98 1.85
775 800 4.586001 CCAGGGCACATTTAGATATGCTTT 59.414 41.667 0.00 0.00 35.98 3.51
776 801 4.141181 TCCAGGGCACATTTAGATATGCTT 60.141 41.667 0.00 0.00 35.98 3.91
777 802 3.395607 TCCAGGGCACATTTAGATATGCT 59.604 43.478 0.00 0.00 35.98 3.79
778 803 3.503748 GTCCAGGGCACATTTAGATATGC 59.496 47.826 0.00 0.00 34.92 3.14
779 804 4.516698 GTGTCCAGGGCACATTTAGATATG 59.483 45.833 20.05 0.00 36.88 1.78
780 805 4.165950 TGTGTCCAGGGCACATTTAGATAT 59.834 41.667 23.73 0.00 41.32 1.63
781 806 3.521531 TGTGTCCAGGGCACATTTAGATA 59.478 43.478 23.73 0.00 41.32 1.98
782 807 2.308570 TGTGTCCAGGGCACATTTAGAT 59.691 45.455 23.73 0.00 41.32 1.98
783 808 1.702401 TGTGTCCAGGGCACATTTAGA 59.298 47.619 23.73 0.00 41.32 2.10
784 809 1.812571 GTGTGTCCAGGGCACATTTAG 59.187 52.381 29.60 0.00 46.66 1.85
785 810 1.546773 GGTGTGTCCAGGGCACATTTA 60.547 52.381 29.60 3.72 46.66 1.40
786 811 0.827507 GGTGTGTCCAGGGCACATTT 60.828 55.000 29.60 0.00 46.66 2.32
787 812 1.228552 GGTGTGTCCAGGGCACATT 60.229 57.895 29.60 0.00 46.66 2.71
788 813 2.436109 GGTGTGTCCAGGGCACAT 59.564 61.111 29.60 0.00 46.66 3.21
789 814 3.884774 GGGTGTGTCCAGGGCACA 61.885 66.667 23.73 23.73 43.60 4.57
790 815 3.429372 TTGGGTGTGTCCAGGGCAC 62.429 63.158 18.14 18.14 38.17 5.01
791 816 3.099841 TTGGGTGTGTCCAGGGCA 61.100 61.111 0.00 0.00 38.17 5.36
792 817 2.142292 ATCTTGGGTGTGTCCAGGGC 62.142 60.000 0.00 0.00 38.17 5.19
793 818 1.285280 TATCTTGGGTGTGTCCAGGG 58.715 55.000 0.00 0.00 38.17 4.45
794 819 3.054434 TGATTATCTTGGGTGTGTCCAGG 60.054 47.826 0.00 0.00 38.17 4.45
795 820 4.194640 CTGATTATCTTGGGTGTGTCCAG 58.805 47.826 0.00 0.00 38.17 3.86
796 821 3.622206 GCTGATTATCTTGGGTGTGTCCA 60.622 47.826 0.00 0.00 38.11 4.02
797 822 2.945668 GCTGATTATCTTGGGTGTGTCC 59.054 50.000 0.00 0.00 0.00 4.02
798 823 2.945668 GGCTGATTATCTTGGGTGTGTC 59.054 50.000 0.00 0.00 0.00 3.67
799 824 2.578021 AGGCTGATTATCTTGGGTGTGT 59.422 45.455 0.00 0.00 0.00 3.72
800 825 3.287867 AGGCTGATTATCTTGGGTGTG 57.712 47.619 0.00 0.00 0.00 3.82
801 826 5.653255 AATAGGCTGATTATCTTGGGTGT 57.347 39.130 0.00 0.00 0.00 4.16
802 827 6.533730 TGTAATAGGCTGATTATCTTGGGTG 58.466 40.000 0.00 0.00 0.00 4.61
803 828 6.763715 TGTAATAGGCTGATTATCTTGGGT 57.236 37.500 0.00 0.00 0.00 4.51
804 829 9.553064 GATATGTAATAGGCTGATTATCTTGGG 57.447 37.037 0.00 0.00 28.50 4.12
805 830 9.553064 GGATATGTAATAGGCTGATTATCTTGG 57.447 37.037 0.00 0.00 28.50 3.61
812 837 8.976353 CAGAGTAGGATATGTAATAGGCTGATT 58.024 37.037 0.00 0.00 28.50 2.57
813 838 8.119246 ACAGAGTAGGATATGTAATAGGCTGAT 58.881 37.037 0.00 0.00 28.50 2.90
814 839 7.471041 ACAGAGTAGGATATGTAATAGGCTGA 58.529 38.462 0.00 0.00 28.50 4.26
815 840 7.710676 ACAGAGTAGGATATGTAATAGGCTG 57.289 40.000 0.00 0.00 28.50 4.85
816 841 9.245481 GTAACAGAGTAGGATATGTAATAGGCT 57.755 37.037 0.00 0.00 28.50 4.58
817 842 9.245481 AGTAACAGAGTAGGATATGTAATAGGC 57.755 37.037 0.00 0.00 28.50 3.93
829 854 9.265862 AGTACTCTAACTAGTAACAGAGTAGGA 57.734 37.037 26.65 15.05 46.14 2.94
843 868 7.923344 GTGTATGTCCGACTAGTACTCTAACTA 59.077 40.741 0.00 0.00 0.00 2.24
844 869 6.760770 GTGTATGTCCGACTAGTACTCTAACT 59.239 42.308 0.00 0.00 0.00 2.24
845 870 6.018343 GGTGTATGTCCGACTAGTACTCTAAC 60.018 46.154 0.00 0.00 0.00 2.34
846 871 6.051717 GGTGTATGTCCGACTAGTACTCTAA 58.948 44.000 0.00 0.00 0.00 2.10
847 872 5.365025 AGGTGTATGTCCGACTAGTACTCTA 59.635 44.000 0.00 0.00 0.00 2.43
848 873 4.163839 AGGTGTATGTCCGACTAGTACTCT 59.836 45.833 0.00 0.00 0.00 3.24
849 874 4.450053 AGGTGTATGTCCGACTAGTACTC 58.550 47.826 0.00 2.54 0.00 2.59
850 875 4.450053 GAGGTGTATGTCCGACTAGTACT 58.550 47.826 0.00 0.00 0.00 2.73
851 876 3.563390 GGAGGTGTATGTCCGACTAGTAC 59.437 52.174 0.00 0.00 0.00 2.73
852 877 3.813443 GGAGGTGTATGTCCGACTAGTA 58.187 50.000 0.00 0.00 0.00 1.82
853 878 2.652590 GGAGGTGTATGTCCGACTAGT 58.347 52.381 0.00 0.00 0.00 2.57
860 885 3.373130 GCTAAAAACGGAGGTGTATGTCC 59.627 47.826 0.00 0.00 0.00 4.02
861 886 4.251268 AGCTAAAAACGGAGGTGTATGTC 58.749 43.478 0.00 0.00 0.00 3.06
862 887 4.020485 AGAGCTAAAAACGGAGGTGTATGT 60.020 41.667 0.00 0.00 0.00 2.29
863 888 4.330074 CAGAGCTAAAAACGGAGGTGTATG 59.670 45.833 0.00 0.00 0.00 2.39
864 889 4.222145 TCAGAGCTAAAAACGGAGGTGTAT 59.778 41.667 0.00 0.00 0.00 2.29
865 890 3.575256 TCAGAGCTAAAAACGGAGGTGTA 59.425 43.478 0.00 0.00 0.00 2.90
866 891 2.367567 TCAGAGCTAAAAACGGAGGTGT 59.632 45.455 0.00 0.00 0.00 4.16
867 892 2.996621 CTCAGAGCTAAAAACGGAGGTG 59.003 50.000 0.00 0.00 0.00 4.00
868 893 2.028020 CCTCAGAGCTAAAAACGGAGGT 60.028 50.000 9.51 0.00 39.72 3.85
869 894 2.028020 ACCTCAGAGCTAAAAACGGAGG 60.028 50.000 14.38 14.38 46.09 4.30
870 895 2.996621 CACCTCAGAGCTAAAAACGGAG 59.003 50.000 0.00 0.00 0.00 4.63
871 896 2.367567 ACACCTCAGAGCTAAAAACGGA 59.632 45.455 0.00 0.00 0.00 4.69
872 897 2.737252 GACACCTCAGAGCTAAAAACGG 59.263 50.000 0.00 0.00 0.00 4.44
873 898 2.408704 CGACACCTCAGAGCTAAAAACG 59.591 50.000 0.00 0.00 0.00 3.60
874 899 2.737252 CCGACACCTCAGAGCTAAAAAC 59.263 50.000 0.00 0.00 0.00 2.43
875 900 2.631062 TCCGACACCTCAGAGCTAAAAA 59.369 45.455 0.00 0.00 0.00 1.94
876 901 2.231478 CTCCGACACCTCAGAGCTAAAA 59.769 50.000 0.00 0.00 0.00 1.52
877 902 1.819288 CTCCGACACCTCAGAGCTAAA 59.181 52.381 0.00 0.00 0.00 1.85
878 903 1.004394 TCTCCGACACCTCAGAGCTAA 59.996 52.381 0.00 0.00 0.00 3.09
879 904 0.618981 TCTCCGACACCTCAGAGCTA 59.381 55.000 0.00 0.00 0.00 3.32
880 905 0.963355 GTCTCCGACACCTCAGAGCT 60.963 60.000 0.00 0.00 32.09 4.09
881 906 1.509004 GTCTCCGACACCTCAGAGC 59.491 63.158 0.00 0.00 32.09 4.09
882 907 1.649390 CCGTCTCCGACACCTCAGAG 61.649 65.000 0.00 0.00 35.63 3.35
883 908 1.674651 CCGTCTCCGACACCTCAGA 60.675 63.158 0.00 0.00 35.63 3.27
884 909 1.241990 TTCCGTCTCCGACACCTCAG 61.242 60.000 0.00 0.00 35.63 3.35
885 910 1.228337 TTCCGTCTCCGACACCTCA 60.228 57.895 0.00 0.00 35.63 3.86
886 911 1.507174 CTTCCGTCTCCGACACCTC 59.493 63.158 0.00 0.00 35.63 3.85
887 912 2.637383 GCTTCCGTCTCCGACACCT 61.637 63.158 0.00 0.00 35.63 4.00
915 940 1.336332 CGATCCCTCTTATCACGGCTG 60.336 57.143 0.00 0.00 0.00 4.85
933 958 3.691342 CTTGCCAGTCGGGGTCGA 61.691 66.667 0.00 0.00 43.86 4.20
936 961 1.831652 CTTCTCTTGCCAGTCGGGGT 61.832 60.000 0.00 0.00 37.04 4.95
940 965 0.667487 TTCGCTTCTCTTGCCAGTCG 60.667 55.000 0.00 0.00 0.00 4.18
943 968 0.952497 TGCTTCGCTTCTCTTGCCAG 60.952 55.000 0.00 0.00 0.00 4.85
944 969 0.952497 CTGCTTCGCTTCTCTTGCCA 60.952 55.000 0.00 0.00 0.00 4.92
970 995 6.912203 TCAAAAGGCGAATCGATTTATGTA 57.088 33.333 12.81 0.00 0.00 2.29
972 997 6.912051 TGAATCAAAAGGCGAATCGATTTATG 59.088 34.615 12.81 6.84 0.00 1.90
975 1000 5.309323 TGAATCAAAAGGCGAATCGATTT 57.691 34.783 12.81 3.52 0.00 2.17
982 1007 5.393352 CCATCATCTTGAATCAAAAGGCGAA 60.393 40.000 0.00 0.00 0.00 4.70
988 1013 3.429272 GCCGCCATCATCTTGAATCAAAA 60.429 43.478 0.00 0.00 0.00 2.44
1063 1089 1.123756 CGAGACGACGGCTTTGTAAAC 59.876 52.381 3.81 0.00 0.00 2.01
1065 1091 1.005294 GCGAGACGACGGCTTTGTAA 61.005 55.000 3.81 0.00 0.00 2.41
1093 1119 4.809496 CCGGCCATGCTCCTGCTT 62.809 66.667 2.24 0.00 40.48 3.91
1144 1170 2.026822 TGGATCTGAGAGGAAAACAGGC 60.027 50.000 0.00 0.00 33.19 4.85
1185 1211 0.385974 CGCCGGAAAAGTCTTTGCAG 60.386 55.000 5.05 1.12 32.70 4.41
1244 1270 8.579850 AAAAAGTTGCAGATCTTATACCATCA 57.420 30.769 0.00 0.00 0.00 3.07
1288 1394 2.287308 CGGACAGATCGGAGATGAGTTC 60.287 54.545 0.00 0.00 45.12 3.01
1324 1430 2.359230 GCTCTGGCGCAGGTTCTT 60.359 61.111 10.83 0.00 31.51 2.52
1400 1506 1.338655 GCGATCAGGTAGAAGAGGTCC 59.661 57.143 0.00 0.00 0.00 4.46
1487 1593 2.933495 TAGGATCAACGTGTCCGAAG 57.067 50.000 8.67 0.00 39.54 3.79
1560 1666 9.160496 CAACTAAGAGAGCAAATCATTACTCTT 57.840 33.333 0.00 0.00 39.01 2.85
1564 1670 6.094048 TGCCAACTAAGAGAGCAAATCATTAC 59.906 38.462 0.00 0.00 0.00 1.89
1569 1675 4.880696 AGATGCCAACTAAGAGAGCAAATC 59.119 41.667 0.00 0.00 36.95 2.17
1571 1677 4.292186 AGATGCCAACTAAGAGAGCAAA 57.708 40.909 0.00 0.00 36.95 3.68
1573 1679 3.769300 TGTAGATGCCAACTAAGAGAGCA 59.231 43.478 0.00 0.00 37.94 4.26
1574 1680 4.116238 GTGTAGATGCCAACTAAGAGAGC 58.884 47.826 0.00 0.00 0.00 4.09
1575 1681 5.126222 TCAGTGTAGATGCCAACTAAGAGAG 59.874 44.000 0.00 0.00 0.00 3.20
1577 1683 5.330455 TCAGTGTAGATGCCAACTAAGAG 57.670 43.478 0.00 0.00 0.00 2.85
1627 1738 7.715265 TCAATTCTGAGATAATAAAGTCGCC 57.285 36.000 0.00 0.00 0.00 5.54
1686 1797 9.398921 AGGACCCAGAGATTGTAGAAATTATAT 57.601 33.333 0.00 0.00 0.00 0.86
1689 1800 7.037586 ACAAGGACCCAGAGATTGTAGAAATTA 60.038 37.037 0.00 0.00 32.58 1.40
1690 1801 6.183347 CAAGGACCCAGAGATTGTAGAAATT 58.817 40.000 0.00 0.00 0.00 1.82
1691 1802 5.251700 ACAAGGACCCAGAGATTGTAGAAAT 59.748 40.000 0.00 0.00 32.58 2.17
1698 1809 2.840651 ACCTACAAGGACCCAGAGATTG 59.159 50.000 0.00 0.00 37.67 2.67
1775 1886 1.452651 CATCCAAGTGGCCATCGCT 60.453 57.895 9.72 0.00 37.93 4.93
1800 1911 5.251700 ACATACTTCTCCAACTCTCCCAATT 59.748 40.000 0.00 0.00 0.00 2.32
1904 2015 5.800941 CGCCAACAAAAAGTGTACTTTAACA 59.199 36.000 10.15 0.00 44.69 2.41
1928 2040 5.776744 AGAAGTGCAATTCCTTGACATTTC 58.223 37.500 22.31 0.00 36.52 2.17
1961 2073 4.513318 GTGCAGCCTCCTGAAATAAGATAC 59.487 45.833 0.00 0.00 41.77 2.24
1962 2074 4.410228 AGTGCAGCCTCCTGAAATAAGATA 59.590 41.667 0.00 0.00 41.77 1.98
1963 2075 3.201708 AGTGCAGCCTCCTGAAATAAGAT 59.798 43.478 0.00 0.00 41.77 2.40
1967 2079 2.356125 GGAAGTGCAGCCTCCTGAAATA 60.356 50.000 0.00 0.00 41.77 1.40
1968 2080 1.615384 GGAAGTGCAGCCTCCTGAAAT 60.615 52.381 0.00 0.00 41.77 2.17
1974 2088 1.003696 AGTTTAGGAAGTGCAGCCTCC 59.996 52.381 6.01 3.51 35.73 4.30
1987 2101 4.072131 TGCTAAAGGAACTGCAGTTTAGG 58.928 43.478 31.58 18.61 40.86 2.69
2038 2153 3.895041 GAGGAGGCAGCTTATAGAGAAGT 59.105 47.826 0.00 0.00 0.00 3.01
2054 2170 0.759346 CCCCCAACGAATAGAGGAGG 59.241 60.000 0.00 0.00 0.00 4.30
2056 2172 0.326238 AGCCCCCAACGAATAGAGGA 60.326 55.000 0.00 0.00 0.00 3.71
2060 2176 3.868754 GCCTATAAGCCCCCAACGAATAG 60.869 52.174 0.00 0.00 0.00 1.73
2061 2177 2.039348 GCCTATAAGCCCCCAACGAATA 59.961 50.000 0.00 0.00 0.00 1.75
2080 2196 6.395629 TGGACTAATTATCGCATAACTAGCC 58.604 40.000 0.00 7.18 30.01 3.93
2102 2218 2.641197 GCCCTAATTGGCGGTATGG 58.359 57.895 0.00 0.00 42.54 2.74
2213 2334 5.355350 GTCCATCAAGCTACATAAAGTGCTT 59.645 40.000 0.00 0.00 41.79 3.91
2237 2358 2.807967 TGGTTCAAGATCAGCTCGTTTG 59.192 45.455 0.00 0.00 0.00 2.93
2255 2376 1.141881 CGAGCGAGCCAATACTGGT 59.858 57.895 0.00 0.00 45.53 4.00
2319 2440 9.967346 CCTAATTCTTCGTAATAGACATGAAGA 57.033 33.333 0.00 3.48 43.14 2.87
2320 2441 9.967346 TCCTAATTCTTCGTAATAGACATGAAG 57.033 33.333 0.00 0.00 39.41 3.02
2418 2557 1.132262 GTTGGCCACGTGTCATATTGG 59.868 52.381 15.65 0.00 0.00 3.16
2454 2606 8.606602 GCTCTCAAATTTTGGCCAAAATAATAG 58.393 33.333 42.25 35.60 46.76 1.73
2471 2623 3.406764 GAAGGTGTGTCTGCTCTCAAAT 58.593 45.455 0.00 0.00 0.00 2.32
2575 2727 4.973168 TCAAAGCAAGATAGACCACAACT 58.027 39.130 0.00 0.00 0.00 3.16
2583 2740 6.594788 AGGCAAATTTCAAAGCAAGATAGA 57.405 33.333 1.27 0.00 0.00 1.98
2659 2830 2.162681 TCAGCTTGTCACGATCTCAGA 58.837 47.619 0.00 0.00 0.00 3.27
2660 2831 2.528125 CTCAGCTTGTCACGATCTCAG 58.472 52.381 0.00 0.00 0.00 3.35
2661 2832 1.403382 GCTCAGCTTGTCACGATCTCA 60.403 52.381 0.00 0.00 0.00 3.27
2684 2855 1.352083 TGAGCTGTAGAAAGTGGCCT 58.648 50.000 3.32 0.00 0.00 5.19
2685 2856 1.807142 GTTGAGCTGTAGAAAGTGGCC 59.193 52.381 0.00 0.00 0.00 5.36
2711 2882 2.859806 GCAAGCTCAAAATGTGCGAAGT 60.860 45.455 0.00 0.00 41.31 3.01
2730 2901 7.097192 ACTCAACTCATACTAAAATTCGAGCA 58.903 34.615 0.00 0.00 0.00 4.26
2787 2958 2.356667 GGGCTAGGGCTGCAAACT 59.643 61.111 0.50 0.00 38.73 2.66
2809 2980 1.532868 CATAAGCCGCCTTCACTATGC 59.467 52.381 0.00 0.00 32.47 3.14
2810 2981 2.146342 CCATAAGCCGCCTTCACTATG 58.854 52.381 0.00 0.00 32.47 2.23
2811 2982 1.072331 CCCATAAGCCGCCTTCACTAT 59.928 52.381 0.00 0.00 32.47 2.12
2812 2983 0.468226 CCCATAAGCCGCCTTCACTA 59.532 55.000 0.00 0.00 32.47 2.74
2813 2984 1.224592 CCCATAAGCCGCCTTCACT 59.775 57.895 0.00 0.00 32.47 3.41
2814 2985 0.815615 CTCCCATAAGCCGCCTTCAC 60.816 60.000 0.00 0.00 32.47 3.18
2815 2986 0.980754 TCTCCCATAAGCCGCCTTCA 60.981 55.000 0.00 0.00 32.47 3.02
2816 2987 0.180406 TTCTCCCATAAGCCGCCTTC 59.820 55.000 0.00 0.00 32.47 3.46
2817 2988 0.181350 CTTCTCCCATAAGCCGCCTT 59.819 55.000 0.00 0.00 35.05 4.35
2818 2989 1.832912 CTTCTCCCATAAGCCGCCT 59.167 57.895 0.00 0.00 0.00 5.52
2819 2990 1.894282 GCTTCTCCCATAAGCCGCC 60.894 63.158 0.00 0.00 42.85 6.13
2820 2991 3.737824 GCTTCTCCCATAAGCCGC 58.262 61.111 0.00 0.00 42.85 6.53
2824 2995 4.400567 CCCTTCAAAAGCTTCTCCCATAAG 59.599 45.833 0.00 0.00 0.00 1.73
2825 2996 4.344104 CCCTTCAAAAGCTTCTCCCATAA 58.656 43.478 0.00 0.00 0.00 1.90
2826 2997 3.309121 CCCCTTCAAAAGCTTCTCCCATA 60.309 47.826 0.00 0.00 0.00 2.74
2827 2998 2.558350 CCCCTTCAAAAGCTTCTCCCAT 60.558 50.000 0.00 0.00 0.00 4.00
2828 2999 1.203050 CCCCTTCAAAAGCTTCTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
2829 3000 1.550327 CCCCTTCAAAAGCTTCTCCC 58.450 55.000 0.00 0.00 0.00 4.30
2830 3001 1.203063 ACCCCCTTCAAAAGCTTCTCC 60.203 52.381 0.00 0.00 0.00 3.71
2831 3002 2.294449 ACCCCCTTCAAAAGCTTCTC 57.706 50.000 0.00 0.00 0.00 2.87
2832 3003 2.319844 CAACCCCCTTCAAAAGCTTCT 58.680 47.619 0.00 0.00 0.00 2.85
2833 3004 1.270305 GCAACCCCCTTCAAAAGCTTC 60.270 52.381 0.00 0.00 0.00 3.86
2834 3005 0.758734 GCAACCCCCTTCAAAAGCTT 59.241 50.000 0.00 0.00 0.00 3.74
2835 3006 2.440946 GCAACCCCCTTCAAAAGCT 58.559 52.632 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.