Multiple sequence alignment - TraesCS1B01G459200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G459200 chr1B 100.000 3133 0 0 1 3133 673155983 673159115 0.000000e+00 5786.0
1 TraesCS1B01G459200 chr1B 90.217 92 9 0 1107 1198 673171294 673171203 1.530000e-23 121.0
2 TraesCS1B01G459200 chr1D 88.017 1185 61 31 1741 2876 483112007 483113159 0.000000e+00 1327.0
3 TraesCS1B01G459200 chr1D 90.748 962 43 14 846 1792 483107359 483108289 0.000000e+00 1242.0
4 TraesCS1B01G459200 chr1D 89.358 545 41 11 167 697 370953071 370953612 0.000000e+00 669.0
5 TraesCS1B01G459200 chr1D 84.462 251 27 8 1663 1913 483141182 483140944 1.450000e-58 237.0
6 TraesCS1B01G459200 chr1D 93.333 120 8 0 1 120 371414930 371414811 8.930000e-41 178.0
7 TraesCS1B01G459200 chr1D 88.372 129 13 1 2981 3109 483113266 483113392 1.500000e-33 154.0
8 TraesCS1B01G459200 chr1A 90.452 597 45 8 1566 2159 579837023 579836436 0.000000e+00 776.0
9 TraesCS1B01G459200 chr1A 82.976 934 67 29 2205 3089 579836472 579835582 0.000000e+00 760.0
10 TraesCS1B01G459200 chr1A 91.159 328 13 3 948 1259 579837554 579837227 6.210000e-117 431.0
11 TraesCS1B01G459200 chr1A 85.417 192 20 5 1325 1510 579837211 579837022 3.190000e-45 193.0
12 TraesCS1B01G459200 chr1A 100.000 29 0 0 121 149 267253247 267253275 2.000000e-03 54.7
13 TraesCS1B01G459200 chr1A 96.774 31 1 0 123 153 103874685 103874655 6.000000e-03 52.8
14 TraesCS1B01G459200 chr3D 89.962 528 45 7 152 675 604878258 604877735 0.000000e+00 675.0
15 TraesCS1B01G459200 chr3D 88.826 528 51 7 152 675 32159183 32158660 2.630000e-180 641.0
16 TraesCS1B01G459200 chr3D 88.280 529 54 7 151 675 275624422 275623898 7.380000e-176 627.0
17 TraesCS1B01G459200 chr3D 93.333 120 8 0 1 120 815904 815785 8.930000e-41 178.0
18 TraesCS1B01G459200 chr3D 100.000 28 0 0 123 150 530750465 530750492 6.000000e-03 52.8
19 TraesCS1B01G459200 chr5D 89.163 526 53 4 153 675 47329361 47328837 0.000000e+00 652.0
20 TraesCS1B01G459200 chr5D 100.000 29 0 0 125 153 178631106 178631134 2.000000e-03 54.7
21 TraesCS1B01G459200 chr5B 89.184 527 50 7 153 675 439961061 439961584 0.000000e+00 651.0
22 TraesCS1B01G459200 chr7D 88.615 527 53 7 153 675 87185876 87185353 4.410000e-178 634.0
23 TraesCS1B01G459200 chr7D 100.000 29 0 0 125 153 233183092 233183064 2.000000e-03 54.7
24 TraesCS1B01G459200 chr7D 100.000 29 0 0 126 154 241860934 241860906 2.000000e-03 54.7
25 TraesCS1B01G459200 chr7A 88.469 529 54 7 152 675 46280787 46281313 1.590000e-177 632.0
26 TraesCS1B01G459200 chr7A 100.000 29 0 0 125 153 245645453 245645481 2.000000e-03 54.7
27 TraesCS1B01G459200 chrUn 88.469 529 52 7 151 675 96376502 96375979 5.700000e-177 630.0
28 TraesCS1B01G459200 chr6B 97.500 120 3 0 1 120 201341708 201341589 4.100000e-49 206.0
29 TraesCS1B01G459200 chr6B 100.000 29 0 0 125 153 362154173 362154201 2.000000e-03 54.7
30 TraesCS1B01G459200 chr4D 95.833 120 5 0 1 120 83073379 83073260 8.870000e-46 195.0
31 TraesCS1B01G459200 chr4D 95.000 120 6 0 1 120 312807028 312806909 4.120000e-44 189.0
32 TraesCS1B01G459200 chr4D 95.000 120 6 0 1 120 441360910 441361029 4.120000e-44 189.0
33 TraesCS1B01G459200 chr5A 94.167 120 7 0 1 120 470286115 470285996 1.920000e-42 183.0
34 TraesCS1B01G459200 chr2A 94.167 120 7 0 1 120 375221009 375220890 1.920000e-42 183.0
35 TraesCS1B01G459200 chr6A 93.333 120 8 0 1 120 191397412 191397293 8.930000e-41 178.0
36 TraesCS1B01G459200 chr2B 100.000 29 0 0 125 153 658426552 658426580 2.000000e-03 54.7
37 TraesCS1B01G459200 chr2B 100.000 28 0 0 2164 2191 62600972 62600999 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G459200 chr1B 673155983 673159115 3132 False 5786.000000 5786 100.000000 1 3133 1 chr1B.!!$F1 3132
1 TraesCS1B01G459200 chr1D 483107359 483113392 6033 False 907.666667 1327 89.045667 846 3109 3 chr1D.!!$F2 2263
2 TraesCS1B01G459200 chr1D 370953071 370953612 541 False 669.000000 669 89.358000 167 697 1 chr1D.!!$F1 530
3 TraesCS1B01G459200 chr1A 579835582 579837554 1972 True 540.000000 776 87.501000 948 3089 4 chr1A.!!$R2 2141
4 TraesCS1B01G459200 chr3D 604877735 604878258 523 True 675.000000 675 89.962000 152 675 1 chr3D.!!$R4 523
5 TraesCS1B01G459200 chr3D 32158660 32159183 523 True 641.000000 641 88.826000 152 675 1 chr3D.!!$R2 523
6 TraesCS1B01G459200 chr3D 275623898 275624422 524 True 627.000000 627 88.280000 151 675 1 chr3D.!!$R3 524
7 TraesCS1B01G459200 chr5D 47328837 47329361 524 True 652.000000 652 89.163000 153 675 1 chr5D.!!$R1 522
8 TraesCS1B01G459200 chr5B 439961061 439961584 523 False 651.000000 651 89.184000 153 675 1 chr5B.!!$F1 522
9 TraesCS1B01G459200 chr7D 87185353 87185876 523 True 634.000000 634 88.615000 153 675 1 chr7D.!!$R1 522
10 TraesCS1B01G459200 chr7A 46280787 46281313 526 False 632.000000 632 88.469000 152 675 1 chr7A.!!$F1 523
11 TraesCS1B01G459200 chrUn 96375979 96376502 523 True 630.000000 630 88.469000 151 675 1 chrUn.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.034380 TCCCGGAGACTCGTTCATCT 60.034 55.0 0.73 0.0 0.0 2.90 F
808 830 0.398696 TCAACAACCGTACATGCCCT 59.601 50.0 0.00 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 1708 0.248661 CTAGATGTCGGCTGACCACG 60.249 60.0 22.81 3.47 44.86 4.94 R
2688 6547 0.676782 AGTCACCGCAATTACCTGCC 60.677 55.0 0.00 0.00 39.26 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.100458 ACATATTTAAGTGGATGAGTTTGGC 57.900 36.000 0.00 0.00 0.00 4.52
35 36 6.891908 ACATATTTAAGTGGATGAGTTTGGCT 59.108 34.615 0.00 0.00 0.00 4.75
36 37 8.052748 ACATATTTAAGTGGATGAGTTTGGCTA 58.947 33.333 0.00 0.00 0.00 3.93
37 38 6.759497 ATTTAAGTGGATGAGTTTGGCTAC 57.241 37.500 0.00 0.00 0.00 3.58
38 39 3.788227 AAGTGGATGAGTTTGGCTACA 57.212 42.857 0.00 0.00 0.00 2.74
39 40 3.340814 AGTGGATGAGTTTGGCTACAG 57.659 47.619 0.00 0.00 0.00 2.74
40 41 2.906389 AGTGGATGAGTTTGGCTACAGA 59.094 45.455 0.00 0.00 0.00 3.41
41 42 3.521126 AGTGGATGAGTTTGGCTACAGAT 59.479 43.478 0.00 0.00 0.00 2.90
42 43 4.018960 AGTGGATGAGTTTGGCTACAGATT 60.019 41.667 0.00 0.00 0.00 2.40
43 44 4.702131 GTGGATGAGTTTGGCTACAGATTT 59.298 41.667 0.00 0.00 0.00 2.17
44 45 4.701651 TGGATGAGTTTGGCTACAGATTTG 59.298 41.667 0.00 0.00 0.00 2.32
45 46 4.943705 GGATGAGTTTGGCTACAGATTTGA 59.056 41.667 0.00 0.00 0.00 2.69
46 47 5.065731 GGATGAGTTTGGCTACAGATTTGAG 59.934 44.000 0.00 0.00 0.00 3.02
47 48 4.326826 TGAGTTTGGCTACAGATTTGAGG 58.673 43.478 0.00 0.00 0.00 3.86
48 49 4.041567 TGAGTTTGGCTACAGATTTGAGGA 59.958 41.667 0.00 0.00 0.00 3.71
49 50 5.184892 AGTTTGGCTACAGATTTGAGGAT 57.815 39.130 0.00 0.00 0.00 3.24
50 51 5.189180 AGTTTGGCTACAGATTTGAGGATC 58.811 41.667 0.00 0.00 0.00 3.36
51 52 3.845781 TGGCTACAGATTTGAGGATCC 57.154 47.619 2.48 2.48 0.00 3.36
52 53 2.439507 TGGCTACAGATTTGAGGATCCC 59.560 50.000 8.55 0.11 0.00 3.85
53 54 2.548920 GGCTACAGATTTGAGGATCCCG 60.549 54.545 8.55 0.00 0.00 5.14
54 55 2.548920 GCTACAGATTTGAGGATCCCGG 60.549 54.545 8.55 0.00 0.00 5.73
55 56 1.879575 ACAGATTTGAGGATCCCGGA 58.120 50.000 8.55 0.00 0.00 5.14
56 57 1.765314 ACAGATTTGAGGATCCCGGAG 59.235 52.381 8.55 0.00 0.00 4.63
57 58 2.042464 CAGATTTGAGGATCCCGGAGA 58.958 52.381 8.55 0.00 0.00 3.71
58 59 2.043227 AGATTTGAGGATCCCGGAGAC 58.957 52.381 8.55 0.00 0.00 3.36
59 60 2.043227 GATTTGAGGATCCCGGAGACT 58.957 52.381 8.55 0.00 0.00 3.24
60 61 1.486211 TTTGAGGATCCCGGAGACTC 58.514 55.000 8.55 12.22 0.00 3.36
61 62 0.752009 TTGAGGATCCCGGAGACTCG 60.752 60.000 8.55 0.00 0.00 4.18
62 63 1.152922 GAGGATCCCGGAGACTCGT 60.153 63.158 8.55 0.00 0.00 4.18
63 64 0.752376 GAGGATCCCGGAGACTCGTT 60.752 60.000 8.55 0.00 0.00 3.85
64 65 0.752376 AGGATCCCGGAGACTCGTTC 60.752 60.000 8.55 0.00 0.00 3.95
65 66 1.035932 GGATCCCGGAGACTCGTTCA 61.036 60.000 0.73 0.00 0.00 3.18
66 67 1.033574 GATCCCGGAGACTCGTTCAT 58.966 55.000 0.73 0.00 0.00 2.57
67 68 1.001158 GATCCCGGAGACTCGTTCATC 60.001 57.143 0.73 0.00 0.00 2.92
68 69 0.034380 TCCCGGAGACTCGTTCATCT 60.034 55.000 0.73 0.00 0.00 2.90
69 70 0.818296 CCCGGAGACTCGTTCATCTT 59.182 55.000 0.73 0.00 0.00 2.40
70 71 1.204941 CCCGGAGACTCGTTCATCTTT 59.795 52.381 0.73 0.00 0.00 2.52
71 72 2.353803 CCCGGAGACTCGTTCATCTTTT 60.354 50.000 0.73 0.00 0.00 2.27
72 73 3.326747 CCGGAGACTCGTTCATCTTTTT 58.673 45.455 0.00 0.00 0.00 1.94
73 74 4.491676 CCGGAGACTCGTTCATCTTTTTA 58.508 43.478 0.00 0.00 0.00 1.52
74 75 4.326548 CCGGAGACTCGTTCATCTTTTTAC 59.673 45.833 0.00 0.00 0.00 2.01
75 76 4.030306 CGGAGACTCGTTCATCTTTTTACG 59.970 45.833 0.00 0.00 35.46 3.18
76 77 5.159209 GGAGACTCGTTCATCTTTTTACGA 58.841 41.667 0.00 0.00 40.32 3.43
77 78 5.805994 GGAGACTCGTTCATCTTTTTACGAT 59.194 40.000 0.00 0.00 41.52 3.73
78 79 6.237595 GGAGACTCGTTCATCTTTTTACGATG 60.238 42.308 0.00 0.00 41.52 3.84
79 80 5.577164 AGACTCGTTCATCTTTTTACGATGG 59.423 40.000 0.00 0.00 41.52 3.51
80 81 5.235516 ACTCGTTCATCTTTTTACGATGGT 58.764 37.500 0.00 0.00 41.52 3.55
81 82 5.120208 ACTCGTTCATCTTTTTACGATGGTG 59.880 40.000 0.00 0.00 41.52 4.17
82 83 5.231702 TCGTTCATCTTTTTACGATGGTGA 58.768 37.500 0.00 0.00 38.02 4.02
83 84 5.697178 TCGTTCATCTTTTTACGATGGTGAA 59.303 36.000 0.00 0.00 38.02 3.18
84 85 5.788531 CGTTCATCTTTTTACGATGGTGAAC 59.211 40.000 7.62 7.62 40.23 3.18
85 86 5.873179 TCATCTTTTTACGATGGTGAACC 57.127 39.130 0.00 0.00 38.95 3.62
86 87 5.556915 TCATCTTTTTACGATGGTGAACCT 58.443 37.500 0.37 0.00 38.95 3.50
87 88 6.703319 TCATCTTTTTACGATGGTGAACCTA 58.297 36.000 0.37 0.00 38.95 3.08
88 89 7.335627 TCATCTTTTTACGATGGTGAACCTAT 58.664 34.615 0.37 0.00 38.95 2.57
89 90 6.978343 TCTTTTTACGATGGTGAACCTATG 57.022 37.500 0.37 0.00 36.82 2.23
90 91 5.353123 TCTTTTTACGATGGTGAACCTATGC 59.647 40.000 0.37 0.00 36.82 3.14
91 92 2.902705 TACGATGGTGAACCTATGCC 57.097 50.000 0.37 0.00 36.82 4.40
92 93 1.204146 ACGATGGTGAACCTATGCCT 58.796 50.000 0.37 0.00 36.82 4.75
93 94 1.559682 ACGATGGTGAACCTATGCCTT 59.440 47.619 0.37 0.00 36.82 4.35
94 95 1.942657 CGATGGTGAACCTATGCCTTG 59.057 52.381 0.37 0.00 36.82 3.61
95 96 2.301346 GATGGTGAACCTATGCCTTGG 58.699 52.381 0.37 0.00 36.82 3.61
96 97 1.367346 TGGTGAACCTATGCCTTGGA 58.633 50.000 0.37 0.00 36.82 3.53
97 98 1.707989 TGGTGAACCTATGCCTTGGAA 59.292 47.619 0.37 0.00 36.82 3.53
98 99 2.290896 TGGTGAACCTATGCCTTGGAAG 60.291 50.000 0.37 0.00 36.82 3.46
99 100 2.026262 GGTGAACCTATGCCTTGGAAGA 60.026 50.000 0.00 0.00 0.00 2.87
100 101 3.372025 GGTGAACCTATGCCTTGGAAGAT 60.372 47.826 0.00 0.00 0.00 2.40
101 102 3.629398 GTGAACCTATGCCTTGGAAGATG 59.371 47.826 0.00 0.00 0.00 2.90
102 103 3.523157 TGAACCTATGCCTTGGAAGATGA 59.477 43.478 0.00 0.00 0.00 2.92
103 104 4.018506 TGAACCTATGCCTTGGAAGATGAA 60.019 41.667 0.00 0.00 0.00 2.57
104 105 4.162040 ACCTATGCCTTGGAAGATGAAG 57.838 45.455 0.00 0.00 0.00 3.02
105 106 3.782523 ACCTATGCCTTGGAAGATGAAGA 59.217 43.478 0.00 0.00 0.00 2.87
106 107 4.228210 ACCTATGCCTTGGAAGATGAAGAA 59.772 41.667 0.00 0.00 0.00 2.52
107 108 4.578105 CCTATGCCTTGGAAGATGAAGAAC 59.422 45.833 0.00 0.00 0.00 3.01
108 109 3.507162 TGCCTTGGAAGATGAAGAACA 57.493 42.857 0.00 0.00 0.00 3.18
109 110 3.831323 TGCCTTGGAAGATGAAGAACAA 58.169 40.909 0.00 0.00 0.00 2.83
110 111 3.822735 TGCCTTGGAAGATGAAGAACAAG 59.177 43.478 0.00 0.00 36.11 3.16
111 112 3.366781 GCCTTGGAAGATGAAGAACAAGC 60.367 47.826 0.00 0.00 35.29 4.01
112 113 3.192212 CCTTGGAAGATGAAGAACAAGCC 59.808 47.826 0.00 0.00 35.29 4.35
113 114 2.795329 TGGAAGATGAAGAACAAGCCC 58.205 47.619 0.00 0.00 0.00 5.19
114 115 2.108075 TGGAAGATGAAGAACAAGCCCA 59.892 45.455 0.00 0.00 0.00 5.36
115 116 2.489722 GGAAGATGAAGAACAAGCCCAC 59.510 50.000 0.00 0.00 0.00 4.61
116 117 2.957402 AGATGAAGAACAAGCCCACA 57.043 45.000 0.00 0.00 0.00 4.17
117 118 3.228188 AGATGAAGAACAAGCCCACAA 57.772 42.857 0.00 0.00 0.00 3.33
118 119 2.887152 AGATGAAGAACAAGCCCACAAC 59.113 45.455 0.00 0.00 0.00 3.32
119 120 2.136298 TGAAGAACAAGCCCACAACA 57.864 45.000 0.00 0.00 0.00 3.33
120 121 2.451490 TGAAGAACAAGCCCACAACAA 58.549 42.857 0.00 0.00 0.00 2.83
121 122 2.165437 TGAAGAACAAGCCCACAACAAC 59.835 45.455 0.00 0.00 0.00 3.32
122 123 1.111277 AGAACAAGCCCACAACAACC 58.889 50.000 0.00 0.00 0.00 3.77
123 124 0.820871 GAACAAGCCCACAACAACCA 59.179 50.000 0.00 0.00 0.00 3.67
124 125 1.412343 GAACAAGCCCACAACAACCAT 59.588 47.619 0.00 0.00 0.00 3.55
125 126 1.494960 ACAAGCCCACAACAACCATT 58.505 45.000 0.00 0.00 0.00 3.16
126 127 1.836802 ACAAGCCCACAACAACCATTT 59.163 42.857 0.00 0.00 0.00 2.32
127 128 3.034635 ACAAGCCCACAACAACCATTTA 58.965 40.909 0.00 0.00 0.00 1.40
128 129 3.645687 ACAAGCCCACAACAACCATTTAT 59.354 39.130 0.00 0.00 0.00 1.40
129 130 4.244862 CAAGCCCACAACAACCATTTATC 58.755 43.478 0.00 0.00 0.00 1.75
130 131 3.778265 AGCCCACAACAACCATTTATCT 58.222 40.909 0.00 0.00 0.00 1.98
131 132 4.159557 AGCCCACAACAACCATTTATCTT 58.840 39.130 0.00 0.00 0.00 2.40
132 133 5.329399 AGCCCACAACAACCATTTATCTTA 58.671 37.500 0.00 0.00 0.00 2.10
133 134 5.418840 AGCCCACAACAACCATTTATCTTAG 59.581 40.000 0.00 0.00 0.00 2.18
134 135 5.185056 GCCCACAACAACCATTTATCTTAGT 59.815 40.000 0.00 0.00 0.00 2.24
135 136 6.295067 GCCCACAACAACCATTTATCTTAGTT 60.295 38.462 0.00 0.00 0.00 2.24
136 137 7.666623 CCCACAACAACCATTTATCTTAGTTT 58.333 34.615 0.00 0.00 0.00 2.66
137 138 7.598493 CCCACAACAACCATTTATCTTAGTTTG 59.402 37.037 0.00 0.00 0.00 2.93
138 139 8.356657 CCACAACAACCATTTATCTTAGTTTGA 58.643 33.333 0.00 0.00 0.00 2.69
139 140 9.912634 CACAACAACCATTTATCTTAGTTTGAT 57.087 29.630 0.00 0.00 0.00 2.57
141 142 9.573133 CAACAACCATTTATCTTAGTTTGATCC 57.427 33.333 0.00 0.00 0.00 3.36
142 143 9.533831 AACAACCATTTATCTTAGTTTGATCCT 57.466 29.630 0.00 0.00 0.00 3.24
143 144 9.533831 ACAACCATTTATCTTAGTTTGATCCTT 57.466 29.630 0.00 0.00 0.00 3.36
147 148 9.807649 CCATTTATCTTAGTTTGATCCTTTTGG 57.192 33.333 0.00 0.00 42.21 3.28
251 254 3.697542 TCTGAGTATTTGTAGCTACGGCA 59.302 43.478 18.74 5.71 41.70 5.69
263 266 4.053469 AGCTACGGCACAAACAAAAATT 57.947 36.364 0.00 0.00 41.70 1.82
321 324 6.148811 CCACATGTCTTCTATTTAAACACGGT 59.851 38.462 0.00 0.00 0.00 4.83
328 331 8.231837 GTCTTCTATTTAAACACGGTTTGCATA 58.768 33.333 10.95 7.05 0.00 3.14
373 377 3.057315 ACGGGCAAGTGATCTTCAATTTG 60.057 43.478 0.00 0.00 31.77 2.32
378 382 5.279156 GGCAAGTGATCTTCAATTTGGTCTT 60.279 40.000 0.00 0.00 31.77 3.01
403 407 9.631257 TTCAATCCTGATTTTGCTGAGATATTA 57.369 29.630 0.00 0.00 0.00 0.98
445 449 7.648112 CAGTATCGATATGAAAGAAAGACGGAA 59.352 37.037 8.66 0.00 0.00 4.30
467 471 9.299963 CGGAAAATGCATTGTTGATTAAGATTA 57.700 29.630 13.82 0.00 0.00 1.75
754 776 8.816640 AGAATAAAAGTTTTGGTATGTGCAAG 57.183 30.769 11.18 0.00 0.00 4.01
755 777 7.872483 AGAATAAAAGTTTTGGTATGTGCAAGG 59.128 33.333 11.18 0.00 0.00 3.61
756 778 3.385193 AAGTTTTGGTATGTGCAAGGC 57.615 42.857 0.00 0.00 0.00 4.35
757 779 2.597455 AGTTTTGGTATGTGCAAGGCT 58.403 42.857 0.00 0.00 0.00 4.58
758 780 2.965147 AGTTTTGGTATGTGCAAGGCTT 59.035 40.909 0.00 0.00 0.00 4.35
759 781 4.148838 AGTTTTGGTATGTGCAAGGCTTA 58.851 39.130 0.00 0.00 0.00 3.09
760 782 4.586841 AGTTTTGGTATGTGCAAGGCTTAA 59.413 37.500 0.00 0.00 0.00 1.85
761 783 5.069781 AGTTTTGGTATGTGCAAGGCTTAAA 59.930 36.000 0.00 0.00 0.00 1.52
762 784 5.537300 TTTGGTATGTGCAAGGCTTAAAA 57.463 34.783 0.00 0.00 0.00 1.52
763 785 5.736951 TTGGTATGTGCAAGGCTTAAAAT 57.263 34.783 0.00 0.00 0.00 1.82
764 786 6.842437 TTGGTATGTGCAAGGCTTAAAATA 57.158 33.333 0.00 0.00 0.00 1.40
765 787 6.842437 TGGTATGTGCAAGGCTTAAAATAA 57.158 33.333 0.00 0.00 0.00 1.40
766 788 6.626302 TGGTATGTGCAAGGCTTAAAATAAC 58.374 36.000 0.00 0.00 0.00 1.89
767 789 6.209589 TGGTATGTGCAAGGCTTAAAATAACA 59.790 34.615 0.00 2.76 0.00 2.41
768 790 6.530181 GGTATGTGCAAGGCTTAAAATAACAC 59.470 38.462 0.00 1.17 0.00 3.32
769 791 5.782893 TGTGCAAGGCTTAAAATAACACT 57.217 34.783 0.00 0.00 0.00 3.55
770 792 5.768317 TGTGCAAGGCTTAAAATAACACTC 58.232 37.500 0.00 0.00 0.00 3.51
771 793 5.534654 TGTGCAAGGCTTAAAATAACACTCT 59.465 36.000 0.00 0.00 0.00 3.24
772 794 6.040391 TGTGCAAGGCTTAAAATAACACTCTT 59.960 34.615 0.00 0.00 0.00 2.85
773 795 6.923508 GTGCAAGGCTTAAAATAACACTCTTT 59.076 34.615 0.00 0.00 0.00 2.52
774 796 7.438160 GTGCAAGGCTTAAAATAACACTCTTTT 59.562 33.333 0.00 0.00 0.00 2.27
775 797 8.634444 TGCAAGGCTTAAAATAACACTCTTTTA 58.366 29.630 0.00 0.00 0.00 1.52
776 798 9.639601 GCAAGGCTTAAAATAACACTCTTTTAT 57.360 29.630 0.00 0.00 29.60 1.40
806 828 3.569250 AAATCAACAACCGTACATGCC 57.431 42.857 0.00 0.00 0.00 4.40
807 829 1.459450 ATCAACAACCGTACATGCCC 58.541 50.000 0.00 0.00 0.00 5.36
808 830 0.398696 TCAACAACCGTACATGCCCT 59.601 50.000 0.00 0.00 0.00 5.19
809 831 1.624312 TCAACAACCGTACATGCCCTA 59.376 47.619 0.00 0.00 0.00 3.53
810 832 2.038689 TCAACAACCGTACATGCCCTAA 59.961 45.455 0.00 0.00 0.00 2.69
811 833 2.103537 ACAACCGTACATGCCCTAAC 57.896 50.000 0.00 0.00 0.00 2.34
812 834 1.348366 ACAACCGTACATGCCCTAACA 59.652 47.619 0.00 0.00 0.00 2.41
813 835 2.224572 ACAACCGTACATGCCCTAACAA 60.225 45.455 0.00 0.00 0.00 2.83
814 836 2.814919 CAACCGTACATGCCCTAACAAA 59.185 45.455 0.00 0.00 0.00 2.83
815 837 2.706890 ACCGTACATGCCCTAACAAAG 58.293 47.619 0.00 0.00 0.00 2.77
816 838 2.039348 ACCGTACATGCCCTAACAAAGT 59.961 45.455 0.00 0.00 0.00 2.66
817 839 2.418628 CCGTACATGCCCTAACAAAGTG 59.581 50.000 0.00 0.00 0.00 3.16
818 840 3.331150 CGTACATGCCCTAACAAAGTGA 58.669 45.455 0.00 0.00 0.00 3.41
819 841 3.749088 CGTACATGCCCTAACAAAGTGAA 59.251 43.478 0.00 0.00 0.00 3.18
820 842 4.214545 CGTACATGCCCTAACAAAGTGAAA 59.785 41.667 0.00 0.00 0.00 2.69
821 843 5.278071 CGTACATGCCCTAACAAAGTGAAAA 60.278 40.000 0.00 0.00 0.00 2.29
822 844 4.944048 ACATGCCCTAACAAAGTGAAAAC 58.056 39.130 0.00 0.00 0.00 2.43
823 845 3.701532 TGCCCTAACAAAGTGAAAACG 57.298 42.857 0.00 0.00 0.00 3.60
824 846 2.359531 TGCCCTAACAAAGTGAAAACGG 59.640 45.455 0.00 0.00 0.00 4.44
825 847 2.619646 GCCCTAACAAAGTGAAAACGGA 59.380 45.455 0.00 0.00 0.00 4.69
826 848 3.304458 GCCCTAACAAAGTGAAAACGGAG 60.304 47.826 0.00 0.00 0.00 4.63
827 849 4.131596 CCCTAACAAAGTGAAAACGGAGA 58.868 43.478 0.00 0.00 0.00 3.71
828 850 4.213482 CCCTAACAAAGTGAAAACGGAGAG 59.787 45.833 0.00 0.00 0.00 3.20
829 851 3.692791 AACAAAGTGAAAACGGAGAGC 57.307 42.857 0.00 0.00 0.00 4.09
830 852 1.597663 ACAAAGTGAAAACGGAGAGCG 59.402 47.619 0.00 0.00 0.00 5.03
831 853 1.069906 CAAAGTGAAAACGGAGAGCGG 60.070 52.381 0.00 0.00 0.00 5.52
832 854 0.602905 AAGTGAAAACGGAGAGCGGG 60.603 55.000 0.00 0.00 0.00 6.13
833 855 2.358247 TGAAAACGGAGAGCGGGC 60.358 61.111 0.00 0.00 0.00 6.13
834 856 3.125573 GAAAACGGAGAGCGGGCC 61.126 66.667 0.00 0.00 0.00 5.80
848 870 3.292159 GGCCGGTTGCGGAGTTTT 61.292 61.111 1.90 0.00 42.61 2.43
849 871 2.254350 GCCGGTTGCGGAGTTTTC 59.746 61.111 1.90 0.00 0.00 2.29
850 872 2.258726 GCCGGTTGCGGAGTTTTCT 61.259 57.895 1.90 0.00 0.00 2.52
851 873 1.792118 GCCGGTTGCGGAGTTTTCTT 61.792 55.000 1.90 0.00 0.00 2.52
852 874 0.666374 CCGGTTGCGGAGTTTTCTTT 59.334 50.000 0.00 0.00 0.00 2.52
853 875 1.334689 CCGGTTGCGGAGTTTTCTTTC 60.335 52.381 0.00 0.00 0.00 2.62
854 876 1.602377 CGGTTGCGGAGTTTTCTTTCT 59.398 47.619 0.00 0.00 0.00 2.52
855 877 2.032924 CGGTTGCGGAGTTTTCTTTCTT 59.967 45.455 0.00 0.00 0.00 2.52
856 878 3.629058 GGTTGCGGAGTTTTCTTTCTTC 58.371 45.455 0.00 0.00 0.00 2.87
887 909 2.223203 GCAGCAAACCGATCAGAATCAG 60.223 50.000 0.00 0.00 31.76 2.90
890 912 4.154737 CAGCAAACCGATCAGAATCAGAAA 59.845 41.667 0.00 0.00 31.76 2.52
897 919 4.510711 CCGATCAGAATCAGAAATCACAGG 59.489 45.833 0.00 0.00 31.76 4.00
898 920 5.354767 CGATCAGAATCAGAAATCACAGGA 58.645 41.667 0.00 0.00 31.76 3.86
899 921 5.233902 CGATCAGAATCAGAAATCACAGGAC 59.766 44.000 0.00 0.00 31.76 3.85
903 925 5.121925 CAGAATCAGAAATCACAGGACACAG 59.878 44.000 0.00 0.00 0.00 3.66
904 926 4.897509 ATCAGAAATCACAGGACACAGA 57.102 40.909 0.00 0.00 0.00 3.41
905 927 4.263018 TCAGAAATCACAGGACACAGAG 57.737 45.455 0.00 0.00 0.00 3.35
906 928 3.897505 TCAGAAATCACAGGACACAGAGA 59.102 43.478 0.00 0.00 0.00 3.10
907 929 4.021632 TCAGAAATCACAGGACACAGAGAG 60.022 45.833 0.00 0.00 0.00 3.20
908 930 4.021632 CAGAAATCACAGGACACAGAGAGA 60.022 45.833 0.00 0.00 0.00 3.10
909 931 3.951775 AATCACAGGACACAGAGAGAC 57.048 47.619 0.00 0.00 0.00 3.36
936 959 3.317109 GGCCGGGCCTATATACCC 58.683 66.667 30.86 0.00 46.69 3.69
937 960 1.306739 GGCCGGGCCTATATACCCT 60.307 63.158 30.86 0.00 46.69 4.34
942 965 1.880941 GGGCCTATATACCCTGGAGG 58.119 60.000 0.84 0.00 43.36 4.30
944 967 1.205055 GCCTATATACCCTGGAGGCC 58.795 60.000 10.02 0.00 45.80 5.19
945 968 1.880941 CCTATATACCCTGGAGGCCC 58.119 60.000 0.00 0.00 40.58 5.80
946 969 1.625508 CCTATATACCCTGGAGGCCCC 60.626 61.905 0.00 0.03 40.58 5.80
1312 1351 4.083003 CGATTCGTCCCCAAAAATCTTTGA 60.083 41.667 0.00 0.00 44.03 2.69
1536 1581 4.810790 ACGTTGATTAGTTCTGAGGACAG 58.189 43.478 0.00 0.00 44.66 3.51
1596 1642 9.851686 TCTTTCAGCAAACCACTAATATATGAT 57.148 29.630 0.00 0.00 0.00 2.45
1661 1708 6.304356 TGACTTGATCATGTTGTGTCTTTC 57.696 37.500 14.80 1.04 29.99 2.62
1666 1713 2.912771 TCATGTTGTGTCTTTCGTGGT 58.087 42.857 0.00 0.00 0.00 4.16
1684 1731 0.528684 GTCAGCCGACATCTAGTGCC 60.529 60.000 0.00 0.00 42.13 5.01
1685 1732 0.970427 TCAGCCGACATCTAGTGCCA 60.970 55.000 0.00 0.00 0.00 4.92
1686 1733 0.108186 CAGCCGACATCTAGTGCCAA 60.108 55.000 0.00 0.00 0.00 4.52
1861 5677 1.268283 AAGTGGAGCCTAGGCCTCAC 61.268 60.000 32.95 32.95 43.17 3.51
1925 5744 3.243068 TGCTCTGTTTTCGCCTTTTCTTC 60.243 43.478 0.00 0.00 0.00 2.87
2189 6008 2.293385 ACTACCCCCTCCGTTCCTAAAT 60.293 50.000 0.00 0.00 0.00 1.40
2219 6038 8.015087 TGTCGTTTCAAATATGAACTAGCTTTG 58.985 33.333 0.00 0.00 45.01 2.77
2248 6067 3.013921 AGTCTAGAAAGTCTCCTGAGCG 58.986 50.000 0.00 0.00 0.00 5.03
2288 6107 7.956328 ATGACATCTAGTTGTAGTTGTAGGA 57.044 36.000 6.43 0.00 38.69 2.94
2339 6158 0.846693 AGCCTGAAGTTGGAGTGGTT 59.153 50.000 0.00 0.00 0.00 3.67
2363 6182 9.738832 GTTGTGCAAGTCCTTTTAAATTAACTA 57.261 29.630 0.00 0.00 0.00 2.24
2392 6212 6.315144 TGTGACGAAAGAGAAACAGAAAATCA 59.685 34.615 0.00 0.00 0.00 2.57
2437 6269 3.558931 TGTGAGCAGAAAACTTCAGGA 57.441 42.857 0.00 0.00 0.00 3.86
2453 6304 1.484240 CAGGATGGTCCCTCTTGAGTC 59.516 57.143 0.51 0.00 37.19 3.36
2460 6311 6.954684 GGATGGTCCCTCTTGAGTCTATATTA 59.045 42.308 0.00 0.00 0.00 0.98
2467 6318 7.675619 TCCCTCTTGAGTCTATATTATCATGCA 59.324 37.037 0.00 0.00 0.00 3.96
2499 6353 4.202040 TGGAAACATGTGAGCTTTGTTCAG 60.202 41.667 0.00 0.00 32.66 3.02
2550 6404 6.737720 TCTCTGCTTGTTGTATCATCCTAT 57.262 37.500 0.00 0.00 0.00 2.57
2558 6412 8.540388 GCTTGTTGTATCATCCTATATCCCTTA 58.460 37.037 0.00 0.00 0.00 2.69
2577 6431 8.431910 TCCCTTATGGTATCTTAGTTATGACC 57.568 38.462 0.00 0.00 34.77 4.02
2612 6466 6.092670 ACTTTTCCATCACACGAACATATGAG 59.907 38.462 10.38 2.99 0.00 2.90
2646 6505 9.726438 ATTTATCTTATGTGTAACTGGCTATCC 57.274 33.333 0.00 0.00 38.04 2.59
2667 6526 6.173427 TCCATCAAGTATCATCGAATTCCA 57.827 37.500 0.00 0.00 0.00 3.53
2688 6547 1.677966 AGCAGCTCAACCATGCCAG 60.678 57.895 0.00 0.00 40.89 4.85
2691 6550 2.677524 GCTCAACCATGCCAGGCA 60.678 61.111 18.99 18.99 44.86 4.75
2694 6553 2.283388 CAACCATGCCAGGCAGGT 60.283 61.111 24.24 23.58 43.65 4.00
2703 6579 1.378514 CCAGGCAGGTAATTGCGGT 60.379 57.895 0.00 0.00 45.00 5.68
2725 6601 4.212214 GTGACTCCATCTTTGTGTGAGAAC 59.788 45.833 0.00 0.00 0.00 3.01
2737 6613 1.070758 TGTGAGAACTCTGGTGCCTTC 59.929 52.381 3.51 0.00 0.00 3.46
2755 6631 4.505566 GCCTTCCATAGCCAGATGAACATA 60.506 45.833 0.00 0.00 0.00 2.29
2756 6632 5.243981 CCTTCCATAGCCAGATGAACATAG 58.756 45.833 0.00 0.00 0.00 2.23
2776 6652 2.084546 GTTTGCGAGCAGGTATCCTTT 58.915 47.619 0.00 0.00 0.00 3.11
2784 6660 2.236395 AGCAGGTATCCTTTACGCAGTT 59.764 45.455 0.00 0.00 37.78 3.16
2788 6664 4.024670 AGGTATCCTTTACGCAGTTCTCT 58.975 43.478 0.00 0.00 37.78 3.10
2793 6669 2.028930 CCTTTACGCAGTTCTCTGGAGT 60.029 50.000 0.00 0.00 37.78 3.85
2829 6706 5.182950 GGATGAAACATCACAACCACACATA 59.817 40.000 12.66 0.00 0.00 2.29
2831 6708 5.826586 TGAAACATCACAACCACACATAAC 58.173 37.500 0.00 0.00 0.00 1.89
2832 6709 5.592282 TGAAACATCACAACCACACATAACT 59.408 36.000 0.00 0.00 0.00 2.24
2835 6712 6.072112 ACATCACAACCACACATAACTTTC 57.928 37.500 0.00 0.00 0.00 2.62
2836 6713 5.592282 ACATCACAACCACACATAACTTTCA 59.408 36.000 0.00 0.00 0.00 2.69
2837 6714 6.265196 ACATCACAACCACACATAACTTTCAT 59.735 34.615 0.00 0.00 0.00 2.57
2879 6802 7.233348 TGAAACCCAGCTGAAATAAAGAATTCT 59.767 33.333 17.39 0.88 0.00 2.40
2890 6822 9.426837 TGAAATAAAGAATTCTGCCATCTTTTG 57.573 29.630 9.17 0.00 41.98 2.44
2891 6823 9.428097 GAAATAAAGAATTCTGCCATCTTTTGT 57.572 29.630 9.17 0.00 41.98 2.83
2922 6854 4.532834 AGTCTTGCAAAACCCTTGACTTA 58.467 39.130 8.89 0.00 30.33 2.24
2924 6856 3.634910 TCTTGCAAAACCCTTGACTTACC 59.365 43.478 0.00 0.00 0.00 2.85
2927 6859 2.296190 GCAAAACCCTTGACTTACCAGG 59.704 50.000 0.00 0.00 0.00 4.45
2928 6860 3.562182 CAAAACCCTTGACTTACCAGGT 58.438 45.455 0.00 0.00 0.00 4.00
2930 6862 3.503800 AACCCTTGACTTACCAGGTTC 57.496 47.619 0.00 0.00 32.16 3.62
2937 6871 5.449999 CCTTGACTTACCAGGTTCAACAAAC 60.450 44.000 0.00 0.00 37.12 2.93
2945 6879 3.428862 CCAGGTTCAACAAACACAGGAAC 60.429 47.826 0.00 0.00 39.81 3.62
2956 6890 3.297134 ACACAGGAACCACAAGAACAT 57.703 42.857 0.00 0.00 0.00 2.71
2957 6891 4.431416 ACACAGGAACCACAAGAACATA 57.569 40.909 0.00 0.00 0.00 2.29
2958 6892 4.134563 ACACAGGAACCACAAGAACATAC 58.865 43.478 0.00 0.00 0.00 2.39
2959 6893 4.141482 ACACAGGAACCACAAGAACATACT 60.141 41.667 0.00 0.00 0.00 2.12
2960 6894 4.452455 CACAGGAACCACAAGAACATACTC 59.548 45.833 0.00 0.00 0.00 2.59
2961 6895 4.003648 CAGGAACCACAAGAACATACTCC 58.996 47.826 0.00 0.00 0.00 3.85
2962 6896 3.009143 AGGAACCACAAGAACATACTCCC 59.991 47.826 0.00 0.00 0.00 4.30
2963 6897 3.009143 GGAACCACAAGAACATACTCCCT 59.991 47.826 0.00 0.00 0.00 4.20
2964 6898 4.224370 GGAACCACAAGAACATACTCCCTA 59.776 45.833 0.00 0.00 0.00 3.53
2965 6899 5.104485 GGAACCACAAGAACATACTCCCTAT 60.104 44.000 0.00 0.00 0.00 2.57
2966 6900 5.359194 ACCACAAGAACATACTCCCTATG 57.641 43.478 0.00 0.00 38.65 2.23
2967 6901 4.164221 ACCACAAGAACATACTCCCTATGG 59.836 45.833 0.00 0.00 37.18 2.74
2968 6902 4.444876 CCACAAGAACATACTCCCTATGGG 60.445 50.000 0.00 0.00 46.11 4.00
2970 6904 4.409247 ACAAGAACATACTCCCTATGGGAC 59.591 45.833 0.42 0.00 46.17 4.46
2971 6905 3.231818 AGAACATACTCCCTATGGGACG 58.768 50.000 0.42 1.49 46.17 4.79
2972 6906 2.011122 ACATACTCCCTATGGGACGG 57.989 55.000 0.42 0.00 46.17 4.79
2973 6907 1.502039 ACATACTCCCTATGGGACGGA 59.498 52.381 0.42 0.00 46.17 4.69
2974 6908 2.171840 CATACTCCCTATGGGACGGAG 58.828 57.143 0.42 0.00 46.17 4.63
2975 6909 0.481567 TACTCCCTATGGGACGGAGG 59.518 60.000 0.42 0.00 46.17 4.30
2976 6910 1.534235 CTCCCTATGGGACGGAGGG 60.534 68.421 0.42 0.00 46.17 4.30
2978 6912 4.199804 CCTATGGGACGGAGGGAG 57.800 66.667 0.00 0.00 33.58 4.30
2979 6913 1.233369 CCTATGGGACGGAGGGAGT 59.767 63.158 0.00 0.00 33.58 3.85
2989 6923 4.414677 GGACGGAGGGAGTATATAGGTTT 58.585 47.826 0.00 0.00 0.00 3.27
2990 6924 4.837298 GGACGGAGGGAGTATATAGGTTTT 59.163 45.833 0.00 0.00 0.00 2.43
3055 6996 5.640189 ATTTCCTTCAGAAGTGCATCAAG 57.360 39.130 9.41 0.00 35.40 3.02
3064 7005 7.530426 TCAGAAGTGCATCAAGATAGCTATA 57.470 36.000 6.13 0.00 0.00 1.31
3100 7041 9.103048 GTGTTAACTTCACTTCATATTTTGTCG 57.897 33.333 7.22 0.00 33.59 4.35
3104 7045 6.546395 ACTTCACTTCATATTTTGTCGATGC 58.454 36.000 0.00 0.00 0.00 3.91
3109 7050 5.295292 ACTTCATATTTTGTCGATGCTGGAG 59.705 40.000 0.00 0.00 0.00 3.86
3110 7051 4.769688 TCATATTTTGTCGATGCTGGAGT 58.230 39.130 0.00 0.00 0.00 3.85
3111 7052 4.571984 TCATATTTTGTCGATGCTGGAGTG 59.428 41.667 0.00 0.00 0.00 3.51
3112 7053 0.874390 TTTTGTCGATGCTGGAGTGC 59.126 50.000 0.00 0.00 0.00 4.40
3113 7054 0.035317 TTTGTCGATGCTGGAGTGCT 59.965 50.000 0.00 0.00 0.00 4.40
3114 7055 0.390340 TTGTCGATGCTGGAGTGCTC 60.390 55.000 0.00 0.00 0.00 4.26
3115 7056 1.875813 GTCGATGCTGGAGTGCTCG 60.876 63.158 0.00 0.00 36.07 5.03
3116 7057 2.046285 TCGATGCTGGAGTGCTCGA 61.046 57.895 0.00 0.00 38.86 4.04
3117 7058 1.875813 CGATGCTGGAGTGCTCGAC 60.876 63.158 0.00 0.00 36.48 4.20
3118 7059 1.216444 GATGCTGGAGTGCTCGACA 59.784 57.895 0.00 0.00 0.00 4.35
3127 7068 2.911928 TGCTCGACACACCCCAAA 59.088 55.556 0.00 0.00 0.00 3.28
3128 7069 1.227823 TGCTCGACACACCCCAAAG 60.228 57.895 0.00 0.00 0.00 2.77
3129 7070 1.966451 GCTCGACACACCCCAAAGG 60.966 63.158 0.00 0.00 43.78 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.850156 GCCAAACTCATCCACTTAAATATGTAT 58.150 33.333 0.00 0.00 0.00 2.29
10 11 6.891908 AGCCAAACTCATCCACTTAAATATGT 59.108 34.615 0.00 0.00 0.00 2.29
11 12 7.338800 AGCCAAACTCATCCACTTAAATATG 57.661 36.000 0.00 0.00 0.00 1.78
12 13 8.052748 TGTAGCCAAACTCATCCACTTAAATAT 58.947 33.333 0.00 0.00 0.00 1.28
13 14 7.398829 TGTAGCCAAACTCATCCACTTAAATA 58.601 34.615 0.00 0.00 0.00 1.40
14 15 6.245408 TGTAGCCAAACTCATCCACTTAAAT 58.755 36.000 0.00 0.00 0.00 1.40
15 16 5.626142 TGTAGCCAAACTCATCCACTTAAA 58.374 37.500 0.00 0.00 0.00 1.52
16 17 5.012664 TCTGTAGCCAAACTCATCCACTTAA 59.987 40.000 0.00 0.00 0.00 1.85
17 18 4.530553 TCTGTAGCCAAACTCATCCACTTA 59.469 41.667 0.00 0.00 0.00 2.24
18 19 3.327757 TCTGTAGCCAAACTCATCCACTT 59.672 43.478 0.00 0.00 0.00 3.16
19 20 2.906389 TCTGTAGCCAAACTCATCCACT 59.094 45.455 0.00 0.00 0.00 4.00
20 21 3.334583 TCTGTAGCCAAACTCATCCAC 57.665 47.619 0.00 0.00 0.00 4.02
21 22 4.574674 AATCTGTAGCCAAACTCATCCA 57.425 40.909 0.00 0.00 0.00 3.41
22 23 4.943705 TCAAATCTGTAGCCAAACTCATCC 59.056 41.667 0.00 0.00 0.00 3.51
23 24 5.065731 CCTCAAATCTGTAGCCAAACTCATC 59.934 44.000 0.00 0.00 0.00 2.92
24 25 4.946157 CCTCAAATCTGTAGCCAAACTCAT 59.054 41.667 0.00 0.00 0.00 2.90
25 26 4.041567 TCCTCAAATCTGTAGCCAAACTCA 59.958 41.667 0.00 0.00 0.00 3.41
26 27 4.579869 TCCTCAAATCTGTAGCCAAACTC 58.420 43.478 0.00 0.00 0.00 3.01
27 28 4.640771 TCCTCAAATCTGTAGCCAAACT 57.359 40.909 0.00 0.00 0.00 2.66
28 29 4.336713 GGATCCTCAAATCTGTAGCCAAAC 59.663 45.833 3.84 0.00 0.00 2.93
29 30 4.526970 GGATCCTCAAATCTGTAGCCAAA 58.473 43.478 3.84 0.00 0.00 3.28
30 31 3.117888 GGGATCCTCAAATCTGTAGCCAA 60.118 47.826 12.58 0.00 0.00 4.52
31 32 2.439507 GGGATCCTCAAATCTGTAGCCA 59.560 50.000 12.58 0.00 0.00 4.75
32 33 2.548920 CGGGATCCTCAAATCTGTAGCC 60.549 54.545 12.58 0.00 0.00 3.93
33 34 2.548920 CCGGGATCCTCAAATCTGTAGC 60.549 54.545 12.58 0.00 0.00 3.58
34 35 2.965831 TCCGGGATCCTCAAATCTGTAG 59.034 50.000 12.58 0.00 0.00 2.74
35 36 2.965831 CTCCGGGATCCTCAAATCTGTA 59.034 50.000 12.58 0.00 0.00 2.74
36 37 1.765314 CTCCGGGATCCTCAAATCTGT 59.235 52.381 12.58 0.00 0.00 3.41
37 38 2.042464 TCTCCGGGATCCTCAAATCTG 58.958 52.381 12.58 0.00 0.00 2.90
38 39 2.043227 GTCTCCGGGATCCTCAAATCT 58.957 52.381 12.58 0.00 0.00 2.40
39 40 2.036604 GAGTCTCCGGGATCCTCAAATC 59.963 54.545 12.58 0.00 0.00 2.17
40 41 2.043227 GAGTCTCCGGGATCCTCAAAT 58.957 52.381 12.58 0.00 0.00 2.32
41 42 1.486211 GAGTCTCCGGGATCCTCAAA 58.514 55.000 12.58 0.00 0.00 2.69
42 43 0.752009 CGAGTCTCCGGGATCCTCAA 60.752 60.000 12.58 0.00 0.00 3.02
43 44 1.152943 CGAGTCTCCGGGATCCTCA 60.153 63.158 12.58 0.00 0.00 3.86
44 45 0.752376 AACGAGTCTCCGGGATCCTC 60.752 60.000 12.58 5.15 0.00 3.71
45 46 0.752376 GAACGAGTCTCCGGGATCCT 60.752 60.000 12.58 0.00 0.00 3.24
46 47 1.035932 TGAACGAGTCTCCGGGATCC 61.036 60.000 1.92 1.92 0.00 3.36
47 48 1.001158 GATGAACGAGTCTCCGGGATC 60.001 57.143 0.00 0.00 0.00 3.36
48 49 1.033574 GATGAACGAGTCTCCGGGAT 58.966 55.000 0.00 0.00 0.00 3.85
49 50 0.034380 AGATGAACGAGTCTCCGGGA 60.034 55.000 0.00 0.00 0.00 5.14
50 51 0.818296 AAGATGAACGAGTCTCCGGG 59.182 55.000 0.00 0.00 0.00 5.73
51 52 2.656560 AAAGATGAACGAGTCTCCGG 57.343 50.000 0.00 0.00 0.00 5.14
52 53 4.030306 CGTAAAAAGATGAACGAGTCTCCG 59.970 45.833 0.00 0.00 37.53 4.63
53 54 5.159209 TCGTAAAAAGATGAACGAGTCTCC 58.841 41.667 0.00 0.00 39.25 3.71
54 55 6.237595 CCATCGTAAAAAGATGAACGAGTCTC 60.238 42.308 7.67 0.00 46.25 3.36
55 56 5.577164 CCATCGTAAAAAGATGAACGAGTCT 59.423 40.000 7.67 0.00 46.25 3.24
56 57 5.347907 ACCATCGTAAAAAGATGAACGAGTC 59.652 40.000 7.67 0.00 46.25 3.36
57 58 5.120208 CACCATCGTAAAAAGATGAACGAGT 59.880 40.000 7.67 0.00 46.25 4.18
58 59 5.347635 TCACCATCGTAAAAAGATGAACGAG 59.652 40.000 7.67 0.00 46.25 4.18
59 60 5.231702 TCACCATCGTAAAAAGATGAACGA 58.768 37.500 7.67 0.00 46.09 3.85
60 61 5.524511 TCACCATCGTAAAAAGATGAACG 57.475 39.130 7.67 0.00 46.09 3.95
61 62 6.072673 AGGTTCACCATCGTAAAAAGATGAAC 60.073 38.462 7.67 0.00 46.09 3.18
62 63 6.001460 AGGTTCACCATCGTAAAAAGATGAA 58.999 36.000 7.67 0.00 46.09 2.57
63 64 5.556915 AGGTTCACCATCGTAAAAAGATGA 58.443 37.500 7.67 0.00 46.09 2.92
64 65 5.880054 AGGTTCACCATCGTAAAAAGATG 57.120 39.130 0.00 0.00 43.65 2.90
65 66 6.038271 GCATAGGTTCACCATCGTAAAAAGAT 59.962 38.462 0.00 0.00 38.89 2.40
66 67 5.353123 GCATAGGTTCACCATCGTAAAAAGA 59.647 40.000 0.00 0.00 38.89 2.52
67 68 5.448632 GGCATAGGTTCACCATCGTAAAAAG 60.449 44.000 0.00 0.00 38.89 2.27
68 69 4.396790 GGCATAGGTTCACCATCGTAAAAA 59.603 41.667 0.00 0.00 38.89 1.94
69 70 3.942748 GGCATAGGTTCACCATCGTAAAA 59.057 43.478 0.00 0.00 38.89 1.52
70 71 3.199071 AGGCATAGGTTCACCATCGTAAA 59.801 43.478 0.00 0.00 38.89 2.01
71 72 2.769663 AGGCATAGGTTCACCATCGTAA 59.230 45.455 0.00 0.00 38.89 3.18
72 73 2.394632 AGGCATAGGTTCACCATCGTA 58.605 47.619 0.00 0.00 38.89 3.43
73 74 1.204146 AGGCATAGGTTCACCATCGT 58.796 50.000 0.00 0.00 38.89 3.73
74 75 1.942657 CAAGGCATAGGTTCACCATCG 59.057 52.381 0.00 0.00 38.89 3.84
75 76 2.092429 TCCAAGGCATAGGTTCACCATC 60.092 50.000 0.00 0.00 38.89 3.51
76 77 1.922447 TCCAAGGCATAGGTTCACCAT 59.078 47.619 0.00 0.00 38.89 3.55
77 78 1.367346 TCCAAGGCATAGGTTCACCA 58.633 50.000 0.00 0.00 38.89 4.17
78 79 2.026262 TCTTCCAAGGCATAGGTTCACC 60.026 50.000 0.00 0.00 0.00 4.02
79 80 3.350219 TCTTCCAAGGCATAGGTTCAC 57.650 47.619 0.00 0.00 0.00 3.18
80 81 3.523157 TCATCTTCCAAGGCATAGGTTCA 59.477 43.478 0.00 0.00 0.00 3.18
81 82 4.156455 TCATCTTCCAAGGCATAGGTTC 57.844 45.455 0.00 0.00 0.00 3.62
82 83 4.228210 TCTTCATCTTCCAAGGCATAGGTT 59.772 41.667 0.00 0.00 0.00 3.50
83 84 3.782523 TCTTCATCTTCCAAGGCATAGGT 59.217 43.478 0.00 0.00 0.00 3.08
84 85 4.428294 TCTTCATCTTCCAAGGCATAGG 57.572 45.455 0.00 0.00 0.00 2.57
85 86 5.188434 TGTTCTTCATCTTCCAAGGCATAG 58.812 41.667 0.00 0.00 0.00 2.23
86 87 5.178096 TGTTCTTCATCTTCCAAGGCATA 57.822 39.130 0.00 0.00 0.00 3.14
87 88 4.038271 TGTTCTTCATCTTCCAAGGCAT 57.962 40.909 0.00 0.00 0.00 4.40
88 89 3.507162 TGTTCTTCATCTTCCAAGGCA 57.493 42.857 0.00 0.00 0.00 4.75
89 90 3.366781 GCTTGTTCTTCATCTTCCAAGGC 60.367 47.826 0.00 0.00 32.09 4.35
90 91 3.192212 GGCTTGTTCTTCATCTTCCAAGG 59.808 47.826 0.00 0.00 32.09 3.61
91 92 3.192212 GGGCTTGTTCTTCATCTTCCAAG 59.808 47.826 0.00 0.00 34.03 3.61
92 93 3.157087 GGGCTTGTTCTTCATCTTCCAA 58.843 45.455 0.00 0.00 0.00 3.53
93 94 2.108075 TGGGCTTGTTCTTCATCTTCCA 59.892 45.455 0.00 0.00 0.00 3.53
94 95 2.489722 GTGGGCTTGTTCTTCATCTTCC 59.510 50.000 0.00 0.00 0.00 3.46
95 96 3.149196 TGTGGGCTTGTTCTTCATCTTC 58.851 45.455 0.00 0.00 0.00 2.87
96 97 3.228188 TGTGGGCTTGTTCTTCATCTT 57.772 42.857 0.00 0.00 0.00 2.40
97 98 2.887152 GTTGTGGGCTTGTTCTTCATCT 59.113 45.455 0.00 0.00 0.00 2.90
98 99 2.622942 TGTTGTGGGCTTGTTCTTCATC 59.377 45.455 0.00 0.00 0.00 2.92
99 100 2.665165 TGTTGTGGGCTTGTTCTTCAT 58.335 42.857 0.00 0.00 0.00 2.57
100 101 2.136298 TGTTGTGGGCTTGTTCTTCA 57.864 45.000 0.00 0.00 0.00 3.02
101 102 2.481276 GGTTGTTGTGGGCTTGTTCTTC 60.481 50.000 0.00 0.00 0.00 2.87
102 103 1.480545 GGTTGTTGTGGGCTTGTTCTT 59.519 47.619 0.00 0.00 0.00 2.52
103 104 1.111277 GGTTGTTGTGGGCTTGTTCT 58.889 50.000 0.00 0.00 0.00 3.01
104 105 0.820871 TGGTTGTTGTGGGCTTGTTC 59.179 50.000 0.00 0.00 0.00 3.18
105 106 1.494960 ATGGTTGTTGTGGGCTTGTT 58.505 45.000 0.00 0.00 0.00 2.83
106 107 1.494960 AATGGTTGTTGTGGGCTTGT 58.505 45.000 0.00 0.00 0.00 3.16
107 108 2.618442 AAATGGTTGTTGTGGGCTTG 57.382 45.000 0.00 0.00 0.00 4.01
108 109 4.159557 AGATAAATGGTTGTTGTGGGCTT 58.840 39.130 0.00 0.00 0.00 4.35
109 110 3.778265 AGATAAATGGTTGTTGTGGGCT 58.222 40.909 0.00 0.00 0.00 5.19
110 111 4.535526 AAGATAAATGGTTGTTGTGGGC 57.464 40.909 0.00 0.00 0.00 5.36
111 112 6.834168 ACTAAGATAAATGGTTGTTGTGGG 57.166 37.500 0.00 0.00 0.00 4.61
112 113 8.356657 TCAAACTAAGATAAATGGTTGTTGTGG 58.643 33.333 0.00 0.00 0.00 4.17
113 114 9.912634 ATCAAACTAAGATAAATGGTTGTTGTG 57.087 29.630 0.00 0.00 0.00 3.33
115 116 9.573133 GGATCAAACTAAGATAAATGGTTGTTG 57.427 33.333 0.00 0.00 0.00 3.33
116 117 9.533831 AGGATCAAACTAAGATAAATGGTTGTT 57.466 29.630 0.00 0.00 0.00 2.83
117 118 9.533831 AAGGATCAAACTAAGATAAATGGTTGT 57.466 29.630 0.00 0.00 0.00 3.32
121 122 9.807649 CCAAAAGGATCAAACTAAGATAAATGG 57.192 33.333 0.00 0.00 0.00 3.16
128 129 9.416284 AGTAAAACCAAAAGGATCAAACTAAGA 57.584 29.630 0.00 0.00 0.00 2.10
131 132 8.789762 GCTAGTAAAACCAAAAGGATCAAACTA 58.210 33.333 0.00 0.00 0.00 2.24
132 133 7.286775 TGCTAGTAAAACCAAAAGGATCAAACT 59.713 33.333 0.00 0.00 0.00 2.66
133 134 7.430441 TGCTAGTAAAACCAAAAGGATCAAAC 58.570 34.615 0.00 0.00 0.00 2.93
134 135 7.589958 TGCTAGTAAAACCAAAAGGATCAAA 57.410 32.000 0.00 0.00 0.00 2.69
135 136 7.589958 TTGCTAGTAAAACCAAAAGGATCAA 57.410 32.000 0.00 0.00 0.00 2.57
136 137 7.589958 TTTGCTAGTAAAACCAAAAGGATCA 57.410 32.000 3.25 0.00 0.00 2.92
137 138 8.520835 CTTTTGCTAGTAAAACCAAAAGGATC 57.479 34.615 13.90 0.00 44.97 3.36
141 142 6.578944 ACCCTTTTGCTAGTAAAACCAAAAG 58.421 36.000 13.90 15.94 46.73 2.27
142 143 6.407187 GGACCCTTTTGCTAGTAAAACCAAAA 60.407 38.462 13.90 8.59 36.23 2.44
143 144 5.069383 GGACCCTTTTGCTAGTAAAACCAAA 59.931 40.000 13.90 1.24 0.00 3.28
144 145 4.585581 GGACCCTTTTGCTAGTAAAACCAA 59.414 41.667 13.90 0.00 0.00 3.67
145 146 4.146564 GGACCCTTTTGCTAGTAAAACCA 58.853 43.478 13.90 0.00 0.00 3.67
146 147 3.189910 CGGACCCTTTTGCTAGTAAAACC 59.810 47.826 13.90 12.35 0.00 3.27
147 148 3.817084 ACGGACCCTTTTGCTAGTAAAAC 59.183 43.478 13.90 5.46 0.00 2.43
148 149 3.816523 CACGGACCCTTTTGCTAGTAAAA 59.183 43.478 16.48 16.48 0.00 1.52
149 150 3.404899 CACGGACCCTTTTGCTAGTAAA 58.595 45.455 1.42 1.42 0.00 2.01
251 254 8.723942 TGTAGGCAAATACAATTTTTGTTTGT 57.276 26.923 0.00 0.00 42.22 2.83
263 266 2.554462 TGCGCTTTTGTAGGCAAATACA 59.446 40.909 9.73 0.00 43.26 2.29
287 290 8.503458 AAATAGAAGACATGTGGAATCTTGAG 57.497 34.615 1.15 0.00 32.83 3.02
373 377 4.460382 TCAGCAAAATCAGGATTGAAGACC 59.540 41.667 0.00 0.00 36.78 3.85
378 382 9.631257 TTAATATCTCAGCAAAATCAGGATTGA 57.369 29.630 0.00 0.00 37.81 2.57
617 628 7.458397 TGTTTCTGAGATTAAACCCACAGTAT 58.542 34.615 0.00 0.00 35.23 2.12
633 644 9.681062 TTATAGAAAACCCCTAATGTTTCTGAG 57.319 33.333 7.57 0.00 34.97 3.35
664 676 3.672767 AAAGAAATAGGTCCGTCACGT 57.327 42.857 0.00 0.00 0.00 4.49
728 750 9.906660 CTTGCACATACCAAAACTTTTATTCTA 57.093 29.630 0.00 0.00 0.00 2.10
729 751 7.872483 CCTTGCACATACCAAAACTTTTATTCT 59.128 33.333 0.00 0.00 0.00 2.40
730 752 7.360017 GCCTTGCACATACCAAAACTTTTATTC 60.360 37.037 0.00 0.00 0.00 1.75
731 753 6.426633 GCCTTGCACATACCAAAACTTTTATT 59.573 34.615 0.00 0.00 0.00 1.40
732 754 5.931724 GCCTTGCACATACCAAAACTTTTAT 59.068 36.000 0.00 0.00 0.00 1.40
733 755 5.069781 AGCCTTGCACATACCAAAACTTTTA 59.930 36.000 0.00 0.00 0.00 1.52
734 756 4.126437 GCCTTGCACATACCAAAACTTTT 58.874 39.130 0.00 0.00 0.00 2.27
735 757 3.387699 AGCCTTGCACATACCAAAACTTT 59.612 39.130 0.00 0.00 0.00 2.66
736 758 2.965147 AGCCTTGCACATACCAAAACTT 59.035 40.909 0.00 0.00 0.00 2.66
737 759 2.597455 AGCCTTGCACATACCAAAACT 58.403 42.857 0.00 0.00 0.00 2.66
738 760 3.385193 AAGCCTTGCACATACCAAAAC 57.615 42.857 0.00 0.00 0.00 2.43
739 761 5.537300 TTTAAGCCTTGCACATACCAAAA 57.463 34.783 0.00 0.00 0.00 2.44
740 762 5.537300 TTTTAAGCCTTGCACATACCAAA 57.463 34.783 0.00 0.00 0.00 3.28
741 763 5.736951 ATTTTAAGCCTTGCACATACCAA 57.263 34.783 0.00 0.00 0.00 3.67
742 764 6.209589 TGTTATTTTAAGCCTTGCACATACCA 59.790 34.615 0.00 0.00 0.00 3.25
743 765 6.530181 GTGTTATTTTAAGCCTTGCACATACC 59.470 38.462 0.00 0.00 0.00 2.73
744 766 7.312899 AGTGTTATTTTAAGCCTTGCACATAC 58.687 34.615 0.00 0.00 0.00 2.39
745 767 7.393234 AGAGTGTTATTTTAAGCCTTGCACATA 59.607 33.333 0.00 0.00 0.00 2.29
746 768 6.209391 AGAGTGTTATTTTAAGCCTTGCACAT 59.791 34.615 0.00 0.00 0.00 3.21
747 769 5.534654 AGAGTGTTATTTTAAGCCTTGCACA 59.465 36.000 0.00 0.00 0.00 4.57
748 770 6.013842 AGAGTGTTATTTTAAGCCTTGCAC 57.986 37.500 0.00 0.00 0.00 4.57
749 771 6.648879 AAGAGTGTTATTTTAAGCCTTGCA 57.351 33.333 0.00 0.00 0.00 4.08
750 772 7.946655 AAAAGAGTGTTATTTTAAGCCTTGC 57.053 32.000 0.00 0.00 0.00 4.01
784 806 4.303282 GGCATGTACGGTTGTTGATTTTT 58.697 39.130 0.00 0.00 0.00 1.94
785 807 3.305744 GGGCATGTACGGTTGTTGATTTT 60.306 43.478 0.00 0.00 0.00 1.82
786 808 2.230266 GGGCATGTACGGTTGTTGATTT 59.770 45.455 0.00 0.00 0.00 2.17
787 809 1.816224 GGGCATGTACGGTTGTTGATT 59.184 47.619 0.00 0.00 0.00 2.57
788 810 1.004277 AGGGCATGTACGGTTGTTGAT 59.996 47.619 0.00 0.00 0.00 2.57
789 811 0.398696 AGGGCATGTACGGTTGTTGA 59.601 50.000 0.00 0.00 0.00 3.18
790 812 2.102070 TAGGGCATGTACGGTTGTTG 57.898 50.000 0.00 0.00 0.00 3.33
791 813 2.224572 TGTTAGGGCATGTACGGTTGTT 60.225 45.455 0.00 0.00 0.00 2.83
792 814 1.348366 TGTTAGGGCATGTACGGTTGT 59.652 47.619 0.00 0.00 0.00 3.32
793 815 2.102070 TGTTAGGGCATGTACGGTTG 57.898 50.000 0.00 0.00 0.00 3.77
794 816 2.863132 TTGTTAGGGCATGTACGGTT 57.137 45.000 0.00 0.00 0.00 4.44
795 817 2.039348 ACTTTGTTAGGGCATGTACGGT 59.961 45.455 0.00 0.00 0.00 4.83
796 818 2.418628 CACTTTGTTAGGGCATGTACGG 59.581 50.000 0.00 0.00 0.00 4.02
797 819 3.331150 TCACTTTGTTAGGGCATGTACG 58.669 45.455 0.00 0.00 0.00 3.67
798 820 5.699097 TTTCACTTTGTTAGGGCATGTAC 57.301 39.130 0.00 0.00 0.00 2.90
799 821 5.278071 CGTTTTCACTTTGTTAGGGCATGTA 60.278 40.000 0.00 0.00 0.00 2.29
800 822 4.499019 CGTTTTCACTTTGTTAGGGCATGT 60.499 41.667 0.00 0.00 0.00 3.21
801 823 3.980775 CGTTTTCACTTTGTTAGGGCATG 59.019 43.478 0.00 0.00 0.00 4.06
802 824 3.005367 CCGTTTTCACTTTGTTAGGGCAT 59.995 43.478 0.00 0.00 0.00 4.40
803 825 2.359531 CCGTTTTCACTTTGTTAGGGCA 59.640 45.455 0.00 0.00 0.00 5.36
804 826 2.619646 TCCGTTTTCACTTTGTTAGGGC 59.380 45.455 0.00 0.00 0.00 5.19
805 827 4.131596 TCTCCGTTTTCACTTTGTTAGGG 58.868 43.478 0.00 0.00 0.00 3.53
806 828 4.319549 GCTCTCCGTTTTCACTTTGTTAGG 60.320 45.833 0.00 0.00 0.00 2.69
807 829 4.608445 CGCTCTCCGTTTTCACTTTGTTAG 60.608 45.833 0.00 0.00 0.00 2.34
808 830 3.246699 CGCTCTCCGTTTTCACTTTGTTA 59.753 43.478 0.00 0.00 0.00 2.41
809 831 2.031683 CGCTCTCCGTTTTCACTTTGTT 59.968 45.455 0.00 0.00 0.00 2.83
810 832 1.597663 CGCTCTCCGTTTTCACTTTGT 59.402 47.619 0.00 0.00 0.00 2.83
811 833 1.069906 CCGCTCTCCGTTTTCACTTTG 60.070 52.381 0.00 0.00 34.38 2.77
812 834 1.226746 CCGCTCTCCGTTTTCACTTT 58.773 50.000 0.00 0.00 34.38 2.66
813 835 0.602905 CCCGCTCTCCGTTTTCACTT 60.603 55.000 0.00 0.00 34.38 3.16
814 836 1.004918 CCCGCTCTCCGTTTTCACT 60.005 57.895 0.00 0.00 34.38 3.41
815 837 2.677979 GCCCGCTCTCCGTTTTCAC 61.678 63.158 0.00 0.00 34.38 3.18
816 838 2.358247 GCCCGCTCTCCGTTTTCA 60.358 61.111 0.00 0.00 34.38 2.69
817 839 3.125573 GGCCCGCTCTCCGTTTTC 61.126 66.667 0.00 0.00 34.38 2.29
834 856 1.602377 AGAAAGAAAACTCCGCAACCG 59.398 47.619 0.00 0.00 0.00 4.44
835 857 3.550233 GGAAGAAAGAAAACTCCGCAACC 60.550 47.826 0.00 0.00 0.00 3.77
836 858 3.315470 AGGAAGAAAGAAAACTCCGCAAC 59.685 43.478 0.00 0.00 0.00 4.17
837 859 3.551846 AGGAAGAAAGAAAACTCCGCAA 58.448 40.909 0.00 0.00 0.00 4.85
838 860 3.208747 AGGAAGAAAGAAAACTCCGCA 57.791 42.857 0.00 0.00 0.00 5.69
839 861 3.853676 GCAAGGAAGAAAGAAAACTCCGC 60.854 47.826 0.00 0.00 0.00 5.54
840 862 3.304726 GGCAAGGAAGAAAGAAAACTCCG 60.305 47.826 0.00 0.00 0.00 4.63
841 863 3.636764 TGGCAAGGAAGAAAGAAAACTCC 59.363 43.478 0.00 0.00 0.00 3.85
842 864 4.918810 TGGCAAGGAAGAAAGAAAACTC 57.081 40.909 0.00 0.00 0.00 3.01
843 865 5.268118 CTTGGCAAGGAAGAAAGAAAACT 57.732 39.130 19.55 0.00 0.00 2.66
887 909 4.241681 GTCTCTCTGTGTCCTGTGATTTC 58.758 47.826 0.00 0.00 0.00 2.17
890 912 1.815613 CGTCTCTCTGTGTCCTGTGAT 59.184 52.381 0.00 0.00 0.00 3.06
897 919 1.198178 GTCTGTCCGTCTCTCTGTGTC 59.802 57.143 0.00 0.00 0.00 3.67
898 920 1.240256 GTCTGTCCGTCTCTCTGTGT 58.760 55.000 0.00 0.00 0.00 3.72
899 921 0.167033 CGTCTGTCCGTCTCTCTGTG 59.833 60.000 0.00 0.00 0.00 3.66
903 925 3.053849 GCCCGTCTGTCCGTCTCTC 62.054 68.421 0.00 0.00 0.00 3.20
904 926 3.063084 GCCCGTCTGTCCGTCTCT 61.063 66.667 0.00 0.00 0.00 3.10
905 927 4.131088 GGCCCGTCTGTCCGTCTC 62.131 72.222 0.00 0.00 0.00 3.36
935 958 3.825623 GGATTGGGGGCCTCCAGG 61.826 72.222 27.06 0.00 38.17 4.45
936 959 3.825623 GGGATTGGGGGCCTCCAG 61.826 72.222 27.06 0.00 38.17 3.86
942 965 4.397010 TTGCTGGGGATTGGGGGC 62.397 66.667 0.00 0.00 0.00 5.80
943 966 2.364186 GTTGCTGGGGATTGGGGG 60.364 66.667 0.00 0.00 0.00 5.40
944 967 2.364186 GGTTGCTGGGGATTGGGG 60.364 66.667 0.00 0.00 0.00 4.96
945 968 2.755469 CGGTTGCTGGGGATTGGG 60.755 66.667 0.00 0.00 0.00 4.12
946 969 2.046285 GTCGGTTGCTGGGGATTGG 61.046 63.158 0.00 0.00 0.00 3.16
1042 1081 4.154347 CCTCACCTGCGCTCCTCC 62.154 72.222 9.73 0.00 0.00 4.30
1159 1198 3.451540 AGGGATCGAAGGTAGGAGAAAAC 59.548 47.826 0.00 0.00 0.00 2.43
1224 1263 4.208686 GAGAGGGCAGCCGTACCG 62.209 72.222 6.63 0.00 0.00 4.02
1312 1351 1.697432 TCGTCAGGTCCCAAGATTTGT 59.303 47.619 0.00 0.00 0.00 2.83
1462 1507 9.178427 GCAAAATGCTATCATCATTCTTAACTC 57.822 33.333 0.00 0.00 40.96 3.01
1515 1560 5.060662 TCTGTCCTCAGAACTAATCAACG 57.939 43.478 0.00 0.00 46.17 4.10
1553 1598 8.816144 TGCTGAAAGAAAATTTGACATTACAAC 58.184 29.630 0.00 0.00 34.07 3.32
1596 1642 9.702253 AGTTTCCTTCAGAGAATGTACTATCTA 57.298 33.333 0.00 0.00 0.00 1.98
1602 1648 7.044798 AGCATAGTTTCCTTCAGAGAATGTAC 58.955 38.462 0.00 0.00 0.00 2.90
1603 1649 7.187824 AGCATAGTTTCCTTCAGAGAATGTA 57.812 36.000 0.00 0.00 0.00 2.29
1604 1650 6.059787 AGCATAGTTTCCTTCAGAGAATGT 57.940 37.500 0.00 0.00 0.00 2.71
1638 1685 5.050159 CGAAAGACACAACATGATCAAGTCA 60.050 40.000 3.70 0.00 42.06 3.41
1639 1686 5.050091 ACGAAAGACACAACATGATCAAGTC 60.050 40.000 3.70 4.26 0.00 3.01
1640 1687 4.816385 ACGAAAGACACAACATGATCAAGT 59.184 37.500 0.00 0.00 0.00 3.16
1641 1688 5.142265 CACGAAAGACACAACATGATCAAG 58.858 41.667 0.00 0.00 0.00 3.02
1643 1690 3.498018 CCACGAAAGACACAACATGATCA 59.502 43.478 0.00 0.00 0.00 2.92
1644 1691 3.498397 ACCACGAAAGACACAACATGATC 59.502 43.478 0.00 0.00 0.00 2.92
1661 1708 0.248661 CTAGATGTCGGCTGACCACG 60.249 60.000 22.81 3.47 44.86 4.94
1666 1713 0.970427 TGGCACTAGATGTCGGCTGA 60.970 55.000 0.00 0.00 34.72 4.26
1767 1814 2.160205 GTGGGTAAAGTTCTGCCCTTC 58.840 52.381 10.79 3.66 41.59 3.46
1861 5677 4.968259 TGAGATTATACCAATTGGGGTCG 58.032 43.478 27.89 3.22 42.42 4.79
1925 5744 1.074752 GCAGAAAAGGCTCTCAGACG 58.925 55.000 0.00 0.00 0.00 4.18
2154 5973 6.234404 AGGGGGTAGTTCATATCATAGACT 57.766 41.667 0.00 0.00 0.00 3.24
2165 5984 0.906282 GGAACGGAGGGGGTAGTTCA 60.906 60.000 9.01 0.00 43.24 3.18
2189 6008 8.653338 GCTAGTTCATATTTGAAACGACACTTA 58.347 33.333 0.00 0.00 43.29 2.24
2219 6038 8.958506 TCAGGAGACTTTCTAGACTTGTAATAC 58.041 37.037 0.00 0.00 40.21 1.89
2225 6044 4.674101 CGCTCAGGAGACTTTCTAGACTTG 60.674 50.000 0.00 0.00 40.21 3.16
2363 6182 7.962964 TTCTGTTTCTCTTTCGTCACATAAT 57.037 32.000 0.00 0.00 0.00 1.28
2382 6202 9.113838 ACATAAAGATATCGCTTGATTTTCTGT 57.886 29.630 0.00 0.00 33.40 3.41
2437 6269 8.180165 TGATAATATAGACTCAAGAGGGACCAT 58.820 37.037 1.73 0.00 0.00 3.55
2515 6369 8.496707 ACAACAAGCAGAGAAAATCAAATTTT 57.503 26.923 0.00 0.00 44.56 1.82
2524 6378 6.240894 AGGATGATACAACAAGCAGAGAAAA 58.759 36.000 0.00 0.00 0.00 2.29
2558 6412 7.931015 TTCCAGGTCATAACTAAGATACCAT 57.069 36.000 0.00 0.00 0.00 3.55
2601 6455 8.562892 AGATAAATTTTGGAGCTCATATGTTCG 58.437 33.333 17.19 0.00 0.00 3.95
2645 6504 5.106791 GCTGGAATTCGATGATACTTGATGG 60.107 44.000 0.00 0.00 0.00 3.51
2646 6505 5.467735 TGCTGGAATTCGATGATACTTGATG 59.532 40.000 0.00 0.00 0.00 3.07
2683 6542 2.045708 CGCAATTACCTGCCTGGCA 61.046 57.895 21.96 21.96 39.26 4.92
2688 6547 0.676782 AGTCACCGCAATTACCTGCC 60.677 55.000 0.00 0.00 39.26 4.85
2691 6550 0.981183 TGGAGTCACCGCAATTACCT 59.019 50.000 0.00 0.00 42.61 3.08
2694 6553 3.627395 AAGATGGAGTCACCGCAATTA 57.373 42.857 0.00 0.00 42.61 1.40
2703 6579 4.101585 AGTTCTCACACAAAGATGGAGTCA 59.898 41.667 0.00 0.00 0.00 3.41
2737 6613 5.278169 GCAAACTATGTTCATCTGGCTATGG 60.278 44.000 1.47 0.00 0.00 2.74
2755 6631 0.905357 AGGATACCTGCTCGCAAACT 59.095 50.000 0.00 0.00 29.57 2.66
2756 6632 1.739067 AAGGATACCTGCTCGCAAAC 58.261 50.000 0.00 0.00 32.13 2.93
2776 6652 1.905637 TCACTCCAGAGAACTGCGTA 58.094 50.000 0.70 0.00 42.25 4.42
2784 6660 2.289882 CCAAGCAACATCACTCCAGAGA 60.290 50.000 0.70 0.00 0.00 3.10
2788 6664 0.770499 TCCCAAGCAACATCACTCCA 59.230 50.000 0.00 0.00 0.00 3.86
2793 6669 3.229293 TGTTTCATCCCAAGCAACATCA 58.771 40.909 0.00 0.00 0.00 3.07
2837 6714 8.691797 GCTGGGTTTCATTTTGGAAGTTATATA 58.308 33.333 0.00 0.00 0.00 0.86
2879 6802 3.429492 TCCTATTGCACAAAAGATGGCA 58.571 40.909 0.00 0.00 34.67 4.92
2922 6854 2.099405 CCTGTGTTTGTTGAACCTGGT 58.901 47.619 0.00 0.00 37.45 4.00
2924 6856 3.769536 GTTCCTGTGTTTGTTGAACCTG 58.230 45.455 0.00 0.00 37.45 4.00
2927 6859 3.057174 TGTGGTTCCTGTGTTTGTTGAAC 60.057 43.478 0.00 0.00 38.78 3.18
2928 6860 3.157881 TGTGGTTCCTGTGTTTGTTGAA 58.842 40.909 0.00 0.00 0.00 2.69
2930 6862 3.192422 TCTTGTGGTTCCTGTGTTTGTTG 59.808 43.478 0.00 0.00 0.00 3.33
2937 6871 4.389374 AGTATGTTCTTGTGGTTCCTGTG 58.611 43.478 0.00 0.00 0.00 3.66
2945 6879 4.708177 CCATAGGGAGTATGTTCTTGTGG 58.292 47.826 0.00 0.00 37.42 4.17
2961 6895 0.481567 TACTCCCTCCGTCCCATAGG 59.518 60.000 0.00 0.00 0.00 2.57
2962 6896 2.606751 ATACTCCCTCCGTCCCATAG 57.393 55.000 0.00 0.00 0.00 2.23
2963 6897 4.167502 CCTATATACTCCCTCCGTCCCATA 59.832 50.000 0.00 0.00 0.00 2.74
2964 6898 3.052793 CCTATATACTCCCTCCGTCCCAT 60.053 52.174 0.00 0.00 0.00 4.00
2965 6899 2.310945 CCTATATACTCCCTCCGTCCCA 59.689 54.545 0.00 0.00 0.00 4.37
2966 6900 2.311243 ACCTATATACTCCCTCCGTCCC 59.689 54.545 0.00 0.00 0.00 4.46
2967 6901 3.735720 ACCTATATACTCCCTCCGTCC 57.264 52.381 0.00 0.00 0.00 4.79
2968 6902 6.152492 CCTAAAACCTATATACTCCCTCCGTC 59.848 46.154 0.00 0.00 0.00 4.79
2969 6903 6.015282 CCTAAAACCTATATACTCCCTCCGT 58.985 44.000 0.00 0.00 0.00 4.69
2970 6904 6.251471 TCCTAAAACCTATATACTCCCTCCG 58.749 44.000 0.00 0.00 0.00 4.63
2971 6905 8.502047 TTTCCTAAAACCTATATACTCCCTCC 57.498 38.462 0.00 0.00 0.00 4.30
2998 6932 6.526526 AGTGGTGGTGTTTTGTTTTAGTTTT 58.473 32.000 0.00 0.00 0.00 2.43
3016 6950 7.445096 TGAAGGAAATATACATGCATAGTGGTG 59.555 37.037 0.00 0.00 0.00 4.17
3055 6996 9.911138 GTTAACACCCTCTACTTTATAGCTATC 57.089 37.037 10.16 0.00 0.00 2.08
3064 7005 6.496144 AGTGAAGTTAACACCCTCTACTTT 57.504 37.500 8.61 0.00 38.82 2.66
3100 7041 1.080995 GTGTCGAGCACTCCAGCATC 61.081 60.000 9.86 0.00 44.41 3.91
3110 7051 1.227823 CTTTGGGGTGTGTCGAGCA 60.228 57.895 0.00 0.00 0.00 4.26
3111 7052 1.966451 CCTTTGGGGTGTGTCGAGC 60.966 63.158 0.00 0.00 0.00 5.03
3112 7053 4.379174 CCTTTGGGGTGTGTCGAG 57.621 61.111 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.