Multiple sequence alignment - TraesCS1B01G456100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G456100 chr1B 100.000 3888 0 0 1 3888 670829980 670833867 0.000000e+00 7180
1 TraesCS1B01G456100 chr1B 80.083 1451 247 25 1326 2746 670957005 670958443 0.000000e+00 1040
2 TraesCS1B01G456100 chr1B 79.439 1498 272 23 1282 2754 670798519 670800005 0.000000e+00 1027
3 TraesCS1B01G456100 chr1B 89.394 264 20 6 467 725 670820424 670820684 3.750000e-85 326
4 TraesCS1B01G456100 chr1D 91.196 2851 190 26 467 3277 482274125 482276954 0.000000e+00 3818
5 TraesCS1B01G456100 chr1D 79.607 1731 290 33 1255 2949 482517136 482515433 0.000000e+00 1182
6 TraesCS1B01G456100 chr1D 80.971 1524 259 24 1242 2746 482369666 482371177 0.000000e+00 1179
7 TraesCS1B01G456100 chr1D 80.138 1450 242 30 1326 2746 482492939 482491507 0.000000e+00 1040
8 TraesCS1B01G456100 chr1D 86.726 565 65 8 3327 3888 140109422 140108865 1.530000e-173 619
9 TraesCS1B01G456100 chr1D 85.866 566 71 7 3326 3888 26699027 26698468 9.300000e-166 593
10 TraesCS1B01G456100 chr1D 85.714 567 69 6 3321 3883 143439817 143440375 4.330000e-164 588
11 TraesCS1B01G456100 chr1A 95.874 1721 68 3 1558 3277 579023779 579025497 0.000000e+00 2782
12 TraesCS1B01G456100 chr1A 80.844 1446 239 22 1326 2746 579575778 579574346 0.000000e+00 1101
13 TraesCS1B01G456100 chr1A 94.192 551 29 1 1006 1556 579023135 579023682 0.000000e+00 837
14 TraesCS1B01G456100 chr1A 90.888 439 30 9 467 899 579022541 579022975 7.240000e-162 580
15 TraesCS1B01G456100 chrUn 80.836 1508 252 24 1255 2746 1823544 1825030 0.000000e+00 1149
16 TraesCS1B01G456100 chrUn 80.315 1524 272 21 1242 2746 1926908 1928422 0.000000e+00 1127
17 TraesCS1B01G456100 chr6D 89.247 558 56 4 3321 3877 454795519 454796073 0.000000e+00 695
18 TraesCS1B01G456100 chr5B 87.170 569 71 2 3321 3888 529658503 529659070 0.000000e+00 645
19 TraesCS1B01G456100 chr5B 96.133 181 2 4 155 332 580744679 580744857 1.370000e-74 291
20 TraesCS1B01G456100 chr3D 87.411 564 66 4 3328 3888 579032152 579032713 0.000000e+00 643
21 TraesCS1B01G456100 chr2D 85.515 573 74 8 3321 3888 420743786 420743218 1.200000e-164 590
22 TraesCS1B01G456100 chr3B 85.442 577 71 7 3321 3888 19246906 19246334 4.330000e-164 588
23 TraesCS1B01G456100 chr4D 85.263 570 77 5 3321 3888 69192504 69193068 7.240000e-162 580
24 TraesCS1B01G456100 chr7B 98.889 180 1 1 155 333 223173367 223173546 1.740000e-83 320
25 TraesCS1B01G456100 chr7B 94.805 154 8 0 1 154 254702884 254703037 1.400000e-59 241
26 TraesCS1B01G456100 chr7B 96.324 136 5 0 332 467 254703030 254703165 1.410000e-54 224
27 TraesCS1B01G456100 chr2B 97.283 184 3 2 153 335 91834052 91833870 1.050000e-80 311
28 TraesCS1B01G456100 chr6B 91.620 179 13 2 154 331 41615990 41616167 3.000000e-61 246
29 TraesCS1B01G456100 chr6B 91.463 164 5 5 173 331 607013595 607013754 2.350000e-52 217
30 TraesCS1B01G456100 chr6B 88.764 178 15 5 156 331 481852992 481852818 3.040000e-51 213
31 TraesCS1B01G456100 chr2A 91.111 180 13 3 155 333 641940802 641940625 1.400000e-59 241
32 TraesCS1B01G456100 chr6A 91.061 179 12 3 155 331 143074975 143074799 5.020000e-59 239
33 TraesCS1B01G456100 chr4B 94.156 154 9 0 1 154 428436221 428436374 6.490000e-58 235
34 TraesCS1B01G456100 chr4B 95.588 136 6 0 332 467 428436367 428436502 6.540000e-53 219
35 TraesCS1B01G456100 chr4A 88.961 154 11 4 180 331 652805716 652805865 6.630000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G456100 chr1B 670829980 670833867 3887 False 7180.000000 7180 100.000000 1 3888 1 chr1B.!!$F3 3887
1 TraesCS1B01G456100 chr1B 670957005 670958443 1438 False 1040.000000 1040 80.083000 1326 2746 1 chr1B.!!$F4 1420
2 TraesCS1B01G456100 chr1B 670798519 670800005 1486 False 1027.000000 1027 79.439000 1282 2754 1 chr1B.!!$F1 1472
3 TraesCS1B01G456100 chr1D 482274125 482276954 2829 False 3818.000000 3818 91.196000 467 3277 1 chr1D.!!$F2 2810
4 TraesCS1B01G456100 chr1D 482515433 482517136 1703 True 1182.000000 1182 79.607000 1255 2949 1 chr1D.!!$R4 1694
5 TraesCS1B01G456100 chr1D 482369666 482371177 1511 False 1179.000000 1179 80.971000 1242 2746 1 chr1D.!!$F3 1504
6 TraesCS1B01G456100 chr1D 482491507 482492939 1432 True 1040.000000 1040 80.138000 1326 2746 1 chr1D.!!$R3 1420
7 TraesCS1B01G456100 chr1D 140108865 140109422 557 True 619.000000 619 86.726000 3327 3888 1 chr1D.!!$R2 561
8 TraesCS1B01G456100 chr1D 26698468 26699027 559 True 593.000000 593 85.866000 3326 3888 1 chr1D.!!$R1 562
9 TraesCS1B01G456100 chr1D 143439817 143440375 558 False 588.000000 588 85.714000 3321 3883 1 chr1D.!!$F1 562
10 TraesCS1B01G456100 chr1A 579022541 579025497 2956 False 1399.666667 2782 93.651333 467 3277 3 chr1A.!!$F1 2810
11 TraesCS1B01G456100 chr1A 579574346 579575778 1432 True 1101.000000 1101 80.844000 1326 2746 1 chr1A.!!$R1 1420
12 TraesCS1B01G456100 chrUn 1823544 1825030 1486 False 1149.000000 1149 80.836000 1255 2746 1 chrUn.!!$F1 1491
13 TraesCS1B01G456100 chrUn 1926908 1928422 1514 False 1127.000000 1127 80.315000 1242 2746 1 chrUn.!!$F2 1504
14 TraesCS1B01G456100 chr6D 454795519 454796073 554 False 695.000000 695 89.247000 3321 3877 1 chr6D.!!$F1 556
15 TraesCS1B01G456100 chr5B 529658503 529659070 567 False 645.000000 645 87.170000 3321 3888 1 chr5B.!!$F1 567
16 TraesCS1B01G456100 chr3D 579032152 579032713 561 False 643.000000 643 87.411000 3328 3888 1 chr3D.!!$F1 560
17 TraesCS1B01G456100 chr2D 420743218 420743786 568 True 590.000000 590 85.515000 3321 3888 1 chr2D.!!$R1 567
18 TraesCS1B01G456100 chr3B 19246334 19246906 572 True 588.000000 588 85.442000 3321 3888 1 chr3B.!!$R1 567
19 TraesCS1B01G456100 chr4D 69192504 69193068 564 False 580.000000 580 85.263000 3321 3888 1 chr4D.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.034896 TCAAGGCTGAAACGAGTCCC 59.965 55.0 0.00 0.00 0.00 4.46 F
21 22 0.035458 CAAGGCTGAAACGAGTCCCT 59.965 55.0 0.00 0.00 0.00 4.20 F
295 296 0.034896 ACACCCACGACTTAGCCTTG 59.965 55.0 0.00 0.00 0.00 3.61 F
422 423 0.039074 AGATTGATCGCGATCCCGAC 60.039 55.0 38.25 27.07 40.40 4.79 F
479 480 0.041224 GATGCAGATCACAGCGCATG 60.041 55.0 11.47 7.92 44.77 4.06 F
637 644 0.314935 ACATGGCTCAACTTTTGGCG 59.685 50.0 0.00 0.00 0.00 5.69 F
1227 1301 0.469917 CACCACCAAGTGAGACACCT 59.530 55.0 0.00 0.00 40.34 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2106 0.250124 TCGAGGGCGCAAAGAAGAAA 60.250 50.000 10.83 0.0 37.46 2.52 R
1982 2182 5.509840 GCAACATGAGGAGGTTATAGACGAT 60.510 44.000 0.00 0.0 0.00 3.73 R
2504 2704 3.276091 CAGTGCCCGCGTCAACAA 61.276 61.111 4.92 0.0 0.00 2.83 R
2623 2823 1.300465 CCTCGTGATGGCGATGGAG 60.300 63.158 0.00 0.0 40.29 3.86 R
2669 2869 1.005984 TGGACGACCGAATTTGCGA 60.006 52.632 0.00 0.0 39.42 5.10 R
2809 3027 1.586564 CGCCCGCTCTACTCTTTCG 60.587 63.158 0.00 0.0 0.00 3.46 R
3315 3584 0.036010 AATCTGGACGAGCAACTGGG 60.036 55.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.100605 ATCAAGGCTGAAACGAGTCC 57.899 50.000 0.00 0.00 34.49 3.85
20 21 0.034896 TCAAGGCTGAAACGAGTCCC 59.965 55.000 0.00 0.00 0.00 4.46
21 22 0.035458 CAAGGCTGAAACGAGTCCCT 59.965 55.000 0.00 0.00 0.00 4.20
22 23 1.275291 CAAGGCTGAAACGAGTCCCTA 59.725 52.381 0.00 0.00 0.00 3.53
23 24 0.896226 AGGCTGAAACGAGTCCCTAC 59.104 55.000 0.00 0.00 0.00 3.18
24 25 0.108281 GGCTGAAACGAGTCCCTACC 60.108 60.000 0.00 0.00 0.00 3.18
25 26 0.896226 GCTGAAACGAGTCCCTACCT 59.104 55.000 0.00 0.00 0.00 3.08
26 27 1.135053 GCTGAAACGAGTCCCTACCTC 60.135 57.143 0.00 0.00 0.00 3.85
32 33 3.702147 GAGTCCCTACCTCGATCGA 57.298 57.895 18.32 18.32 0.00 3.59
33 34 1.515081 GAGTCCCTACCTCGATCGAG 58.485 60.000 33.32 33.32 41.63 4.04
34 35 0.838608 AGTCCCTACCTCGATCGAGT 59.161 55.000 35.85 26.96 40.44 4.18
35 36 1.202675 AGTCCCTACCTCGATCGAGTC 60.203 57.143 35.85 19.42 40.44 3.36
43 44 2.987593 CGATCGAGTCGCCGTTTG 59.012 61.111 10.26 0.00 44.33 2.93
44 45 2.505498 CGATCGAGTCGCCGTTTGG 61.505 63.158 10.26 0.00 44.33 3.28
55 56 3.306206 CCGTTTGGCAAGTAATCGC 57.694 52.632 0.00 0.00 0.00 4.58
60 61 2.513897 GGCAAGTAATCGCCGGCT 60.514 61.111 26.68 8.66 38.82 5.52
61 62 1.227438 GGCAAGTAATCGCCGGCTA 60.227 57.895 26.68 15.56 38.82 3.93
62 63 1.222115 GGCAAGTAATCGCCGGCTAG 61.222 60.000 26.68 10.37 38.82 3.42
63 64 1.222115 GCAAGTAATCGCCGGCTAGG 61.222 60.000 26.68 9.50 44.97 3.02
64 65 0.387929 CAAGTAATCGCCGGCTAGGA 59.612 55.000 26.68 15.44 45.00 2.94
65 66 1.000955 CAAGTAATCGCCGGCTAGGAT 59.999 52.381 26.68 17.20 45.00 3.24
66 67 0.603569 AGTAATCGCCGGCTAGGATG 59.396 55.000 26.68 7.77 45.00 3.51
67 68 0.317479 GTAATCGCCGGCTAGGATGT 59.683 55.000 26.68 12.43 45.00 3.06
68 69 0.601558 TAATCGCCGGCTAGGATGTC 59.398 55.000 26.68 0.00 45.00 3.06
69 70 1.399744 AATCGCCGGCTAGGATGTCA 61.400 55.000 26.68 0.00 45.00 3.58
70 71 1.188219 ATCGCCGGCTAGGATGTCAT 61.188 55.000 26.68 0.00 45.00 3.06
71 72 1.069765 CGCCGGCTAGGATGTCATT 59.930 57.895 26.68 0.00 45.00 2.57
72 73 0.946221 CGCCGGCTAGGATGTCATTC 60.946 60.000 26.68 0.00 45.00 2.67
73 74 0.394565 GCCGGCTAGGATGTCATTCT 59.605 55.000 22.15 0.00 45.00 2.40
74 75 1.606737 GCCGGCTAGGATGTCATTCTC 60.607 57.143 22.15 0.00 45.00 2.87
75 76 1.001406 CCGGCTAGGATGTCATTCTCC 59.999 57.143 0.00 0.00 45.00 3.71
76 77 1.688735 CGGCTAGGATGTCATTCTCCA 59.311 52.381 0.00 0.00 33.75 3.86
77 78 2.103094 CGGCTAGGATGTCATTCTCCAA 59.897 50.000 0.00 0.00 33.75 3.53
78 79 3.432186 CGGCTAGGATGTCATTCTCCAAA 60.432 47.826 0.00 0.00 33.75 3.28
79 80 4.723309 GGCTAGGATGTCATTCTCCAAAT 58.277 43.478 0.00 0.00 33.75 2.32
80 81 4.759183 GGCTAGGATGTCATTCTCCAAATC 59.241 45.833 0.00 0.00 33.75 2.17
81 82 5.371526 GCTAGGATGTCATTCTCCAAATCA 58.628 41.667 0.00 0.00 33.75 2.57
82 83 5.824624 GCTAGGATGTCATTCTCCAAATCAA 59.175 40.000 0.00 0.00 33.75 2.57
83 84 6.319658 GCTAGGATGTCATTCTCCAAATCAAA 59.680 38.462 0.00 0.00 33.75 2.69
84 85 7.014038 GCTAGGATGTCATTCTCCAAATCAAAT 59.986 37.037 0.00 0.00 33.75 2.32
85 86 9.565090 CTAGGATGTCATTCTCCAAATCAAATA 57.435 33.333 0.00 0.00 33.75 1.40
86 87 8.461249 AGGATGTCATTCTCCAAATCAAATAG 57.539 34.615 0.00 0.00 33.75 1.73
87 88 8.277197 AGGATGTCATTCTCCAAATCAAATAGA 58.723 33.333 0.00 0.00 33.75 1.98
88 89 8.566260 GGATGTCATTCTCCAAATCAAATAGAG 58.434 37.037 0.00 0.00 0.00 2.43
89 90 7.325660 TGTCATTCTCCAAATCAAATAGAGC 57.674 36.000 0.00 0.00 0.00 4.09
90 91 6.319658 TGTCATTCTCCAAATCAAATAGAGCC 59.680 38.462 0.00 0.00 0.00 4.70
91 92 6.319658 GTCATTCTCCAAATCAAATAGAGCCA 59.680 38.462 0.00 0.00 0.00 4.75
92 93 7.014038 GTCATTCTCCAAATCAAATAGAGCCAT 59.986 37.037 0.00 0.00 0.00 4.40
93 94 6.949352 TTCTCCAAATCAAATAGAGCCATC 57.051 37.500 0.00 0.00 0.00 3.51
94 95 5.380043 TCTCCAAATCAAATAGAGCCATCC 58.620 41.667 0.00 0.00 0.00 3.51
95 96 5.103982 TCTCCAAATCAAATAGAGCCATCCA 60.104 40.000 0.00 0.00 0.00 3.41
96 97 5.135383 TCCAAATCAAATAGAGCCATCCAG 58.865 41.667 0.00 0.00 0.00 3.86
97 98 4.261909 CCAAATCAAATAGAGCCATCCAGC 60.262 45.833 0.00 0.00 0.00 4.85
98 99 2.245159 TCAAATAGAGCCATCCAGCG 57.755 50.000 0.00 0.00 38.01 5.18
99 100 0.590195 CAAATAGAGCCATCCAGCGC 59.410 55.000 0.00 0.00 38.01 5.92
100 101 0.882042 AAATAGAGCCATCCAGCGCG 60.882 55.000 0.00 0.00 37.66 6.86
101 102 1.748329 AATAGAGCCATCCAGCGCGA 61.748 55.000 12.10 0.00 37.66 5.87
102 103 2.427540 ATAGAGCCATCCAGCGCGAC 62.428 60.000 12.10 0.04 37.66 5.19
103 104 4.521062 GAGCCATCCAGCGCGACT 62.521 66.667 12.10 3.13 38.01 4.18
104 105 4.827087 AGCCATCCAGCGCGACTG 62.827 66.667 12.10 16.92 46.77 3.51
112 113 2.755876 AGCGCGACTGATGGGAGA 60.756 61.111 12.10 0.00 0.00 3.71
113 114 2.279120 GCGCGACTGATGGGAGAG 60.279 66.667 12.10 0.00 0.00 3.20
114 115 2.775856 GCGCGACTGATGGGAGAGA 61.776 63.158 12.10 0.00 0.00 3.10
115 116 1.064946 CGCGACTGATGGGAGAGAC 59.935 63.158 0.00 0.00 0.00 3.36
116 117 1.657751 CGCGACTGATGGGAGAGACA 61.658 60.000 0.00 0.00 0.00 3.41
117 118 0.102120 GCGACTGATGGGAGAGACAG 59.898 60.000 0.00 0.00 36.58 3.51
118 119 1.756430 CGACTGATGGGAGAGACAGA 58.244 55.000 0.00 0.00 34.88 3.41
119 120 1.403679 CGACTGATGGGAGAGACAGAC 59.596 57.143 0.00 0.00 34.88 3.51
120 121 1.403679 GACTGATGGGAGAGACAGACG 59.596 57.143 0.00 0.00 34.88 4.18
121 122 0.102120 CTGATGGGAGAGACAGACGC 59.898 60.000 0.00 0.00 32.90 5.19
122 123 1.064946 GATGGGAGAGACAGACGCG 59.935 63.158 3.53 3.53 0.00 6.01
123 124 2.343163 GATGGGAGAGACAGACGCGG 62.343 65.000 12.47 0.00 0.00 6.46
124 125 4.500116 GGGAGAGACAGACGCGGC 62.500 72.222 12.47 7.86 0.00 6.53
125 126 4.500116 GGAGAGACAGACGCGGCC 62.500 72.222 9.25 0.00 0.00 6.13
126 127 3.444805 GAGAGACAGACGCGGCCT 61.445 66.667 9.25 0.00 0.00 5.19
127 128 2.992114 AGAGACAGACGCGGCCTT 60.992 61.111 9.25 0.00 0.00 4.35
128 129 2.507324 GAGACAGACGCGGCCTTC 60.507 66.667 9.25 5.01 0.00 3.46
129 130 4.421479 AGACAGACGCGGCCTTCG 62.421 66.667 9.25 11.95 42.76 3.79
130 131 4.415332 GACAGACGCGGCCTTCGA 62.415 66.667 9.25 0.00 42.43 3.71
131 132 3.701604 GACAGACGCGGCCTTCGAT 62.702 63.158 9.25 6.20 42.43 3.59
132 133 2.956964 CAGACGCGGCCTTCGATC 60.957 66.667 9.25 12.70 42.43 3.69
133 134 4.208686 AGACGCGGCCTTCGATCC 62.209 66.667 9.25 8.85 42.43 3.36
134 135 4.508128 GACGCGGCCTTCGATCCA 62.508 66.667 19.07 0.00 42.43 3.41
135 136 4.814294 ACGCGGCCTTCGATCCAC 62.814 66.667 19.07 0.00 42.43 4.02
136 137 4.514577 CGCGGCCTTCGATCCACT 62.515 66.667 8.37 0.00 42.43 4.00
137 138 2.125106 GCGGCCTTCGATCCACTT 60.125 61.111 0.00 0.00 42.43 3.16
138 139 2.464459 GCGGCCTTCGATCCACTTG 61.464 63.158 0.00 0.00 42.43 3.16
139 140 2.464459 CGGCCTTCGATCCACTTGC 61.464 63.158 0.00 0.00 42.43 4.01
140 141 2.115291 GGCCTTCGATCCACTTGCC 61.115 63.158 0.00 0.00 0.00 4.52
141 142 1.377202 GCCTTCGATCCACTTGCCA 60.377 57.895 0.00 0.00 0.00 4.92
142 143 1.372087 GCCTTCGATCCACTTGCCAG 61.372 60.000 0.00 0.00 0.00 4.85
143 144 0.745845 CCTTCGATCCACTTGCCAGG 60.746 60.000 0.00 0.00 0.00 4.45
144 145 0.250234 CTTCGATCCACTTGCCAGGA 59.750 55.000 0.00 0.00 38.50 3.86
145 146 0.911769 TTCGATCCACTTGCCAGGAT 59.088 50.000 0.00 0.00 46.98 3.24
148 149 1.528824 ATCCACTTGCCAGGATCCG 59.471 57.895 5.98 1.07 40.57 4.18
149 150 1.274703 ATCCACTTGCCAGGATCCGT 61.275 55.000 5.98 0.00 40.57 4.69
150 151 1.450312 CCACTTGCCAGGATCCGTC 60.450 63.158 5.98 0.00 0.00 4.79
151 152 1.599047 CACTTGCCAGGATCCGTCT 59.401 57.895 5.98 0.00 0.00 4.18
152 153 0.460987 CACTTGCCAGGATCCGTCTC 60.461 60.000 5.98 0.00 0.00 3.36
153 154 1.227089 CTTGCCAGGATCCGTCTCG 60.227 63.158 5.98 0.00 0.00 4.04
154 155 3.371097 TTGCCAGGATCCGTCTCGC 62.371 63.158 5.98 5.42 0.00 5.03
155 156 3.838271 GCCAGGATCCGTCTCGCA 61.838 66.667 5.98 0.00 0.00 5.10
156 157 2.415010 CCAGGATCCGTCTCGCAG 59.585 66.667 5.98 0.00 0.00 5.18
157 158 2.418910 CCAGGATCCGTCTCGCAGT 61.419 63.158 5.98 0.00 0.00 4.40
158 159 1.226802 CAGGATCCGTCTCGCAGTG 60.227 63.158 5.98 0.00 0.00 3.66
159 160 2.105128 GGATCCGTCTCGCAGTGG 59.895 66.667 0.00 0.00 0.00 4.00
160 161 2.583593 GATCCGTCTCGCAGTGGC 60.584 66.667 0.00 0.00 0.00 5.01
180 181 3.085443 CGGAGCTATGTGTAAGTCTGG 57.915 52.381 0.00 0.00 0.00 3.86
181 182 2.223829 CGGAGCTATGTGTAAGTCTGGG 60.224 54.545 0.00 0.00 0.00 4.45
182 183 2.103263 GGAGCTATGTGTAAGTCTGGGG 59.897 54.545 0.00 0.00 0.00 4.96
183 184 2.103263 GAGCTATGTGTAAGTCTGGGGG 59.897 54.545 0.00 0.00 0.00 5.40
184 185 1.838077 GCTATGTGTAAGTCTGGGGGT 59.162 52.381 0.00 0.00 0.00 4.95
185 186 2.420129 GCTATGTGTAAGTCTGGGGGTG 60.420 54.545 0.00 0.00 0.00 4.61
186 187 0.328258 ATGTGTAAGTCTGGGGGTGC 59.672 55.000 0.00 0.00 0.00 5.01
187 188 0.766674 TGTGTAAGTCTGGGGGTGCT 60.767 55.000 0.00 0.00 0.00 4.40
188 189 0.321653 GTGTAAGTCTGGGGGTGCTG 60.322 60.000 0.00 0.00 0.00 4.41
189 190 0.766674 TGTAAGTCTGGGGGTGCTGT 60.767 55.000 0.00 0.00 0.00 4.40
190 191 0.321653 GTAAGTCTGGGGGTGCTGTG 60.322 60.000 0.00 0.00 0.00 3.66
191 192 1.488705 TAAGTCTGGGGGTGCTGTGG 61.489 60.000 0.00 0.00 0.00 4.17
221 222 6.633500 CAACTTTGGACCAAACTATGAAGA 57.367 37.500 15.89 0.00 0.00 2.87
222 223 7.219484 CAACTTTGGACCAAACTATGAAGAT 57.781 36.000 15.89 0.00 0.00 2.40
223 224 7.661040 CAACTTTGGACCAAACTATGAAGATT 58.339 34.615 15.89 0.03 0.00 2.40
224 225 7.839680 ACTTTGGACCAAACTATGAAGATTT 57.160 32.000 15.89 0.00 0.00 2.17
225 226 8.250143 ACTTTGGACCAAACTATGAAGATTTT 57.750 30.769 15.89 0.00 0.00 1.82
226 227 8.704668 ACTTTGGACCAAACTATGAAGATTTTT 58.295 29.630 15.89 0.00 0.00 1.94
250 251 6.636454 TTTTAGGAAAGGGCTTAGATGAGA 57.364 37.500 0.00 0.00 0.00 3.27
251 252 6.636454 TTTAGGAAAGGGCTTAGATGAGAA 57.364 37.500 0.00 0.00 0.00 2.87
252 253 6.831664 TTAGGAAAGGGCTTAGATGAGAAT 57.168 37.500 0.00 0.00 0.00 2.40
253 254 5.723860 AGGAAAGGGCTTAGATGAGAATT 57.276 39.130 0.00 0.00 0.00 2.17
254 255 6.084749 AGGAAAGGGCTTAGATGAGAATTT 57.915 37.500 0.00 0.00 0.00 1.82
255 256 6.497640 AGGAAAGGGCTTAGATGAGAATTTT 58.502 36.000 0.00 0.00 0.00 1.82
256 257 6.956435 AGGAAAGGGCTTAGATGAGAATTTTT 59.044 34.615 0.00 0.00 0.00 1.94
276 277 6.777213 TTTTTAGCAGTTTACACCCTCAAA 57.223 33.333 0.00 0.00 0.00 2.69
277 278 5.761165 TTTAGCAGTTTACACCCTCAAAC 57.239 39.130 0.00 0.00 35.36 2.93
278 279 3.290948 AGCAGTTTACACCCTCAAACA 57.709 42.857 0.00 0.00 37.16 2.83
279 280 2.949644 AGCAGTTTACACCCTCAAACAC 59.050 45.455 0.00 0.00 37.16 3.32
280 281 2.034179 GCAGTTTACACCCTCAAACACC 59.966 50.000 0.00 0.00 37.16 4.16
281 282 2.621526 CAGTTTACACCCTCAAACACCC 59.378 50.000 0.00 0.00 37.16 4.61
282 283 2.242708 AGTTTACACCCTCAAACACCCA 59.757 45.455 0.00 0.00 37.16 4.51
283 284 2.351706 TTACACCCTCAAACACCCAC 57.648 50.000 0.00 0.00 0.00 4.61
284 285 0.107081 TACACCCTCAAACACCCACG 59.893 55.000 0.00 0.00 0.00 4.94
285 286 1.147376 CACCCTCAAACACCCACGA 59.853 57.895 0.00 0.00 0.00 4.35
286 287 1.147600 ACCCTCAAACACCCACGAC 59.852 57.895 0.00 0.00 0.00 4.34
287 288 1.342672 ACCCTCAAACACCCACGACT 61.343 55.000 0.00 0.00 0.00 4.18
288 289 0.179029 CCCTCAAACACCCACGACTT 60.179 55.000 0.00 0.00 0.00 3.01
289 290 1.071071 CCCTCAAACACCCACGACTTA 59.929 52.381 0.00 0.00 0.00 2.24
290 291 2.413837 CCTCAAACACCCACGACTTAG 58.586 52.381 0.00 0.00 0.00 2.18
291 292 1.798813 CTCAAACACCCACGACTTAGC 59.201 52.381 0.00 0.00 0.00 3.09
292 293 0.872388 CAAACACCCACGACTTAGCC 59.128 55.000 0.00 0.00 0.00 3.93
293 294 0.763035 AAACACCCACGACTTAGCCT 59.237 50.000 0.00 0.00 0.00 4.58
294 295 0.763035 AACACCCACGACTTAGCCTT 59.237 50.000 0.00 0.00 0.00 4.35
295 296 0.034896 ACACCCACGACTTAGCCTTG 59.965 55.000 0.00 0.00 0.00 3.61
296 297 0.673644 CACCCACGACTTAGCCTTGG 60.674 60.000 0.00 0.00 0.00 3.61
297 298 1.745489 CCCACGACTTAGCCTTGGC 60.745 63.158 2.97 2.97 0.00 4.52
298 299 1.745489 CCACGACTTAGCCTTGGCC 60.745 63.158 8.17 0.00 0.00 5.36
299 300 1.745489 CACGACTTAGCCTTGGCCC 60.745 63.158 8.17 0.00 0.00 5.80
300 301 2.124695 CGACTTAGCCTTGGCCCC 60.125 66.667 8.17 0.00 0.00 5.80
301 302 2.275748 GACTTAGCCTTGGCCCCC 59.724 66.667 8.17 0.00 0.00 5.40
316 317 2.998949 CCCCCAGCAGTTCCTACC 59.001 66.667 0.00 0.00 0.00 3.18
317 318 1.616628 CCCCCAGCAGTTCCTACCT 60.617 63.158 0.00 0.00 0.00 3.08
318 319 0.326238 CCCCCAGCAGTTCCTACCTA 60.326 60.000 0.00 0.00 0.00 3.08
319 320 1.123928 CCCCAGCAGTTCCTACCTAG 58.876 60.000 0.00 0.00 0.00 3.02
320 321 0.466124 CCCAGCAGTTCCTACCTAGC 59.534 60.000 0.00 0.00 0.00 3.42
321 322 1.490574 CCAGCAGTTCCTACCTAGCT 58.509 55.000 0.00 0.00 0.00 3.32
322 323 1.410882 CCAGCAGTTCCTACCTAGCTC 59.589 57.143 0.00 0.00 0.00 4.09
323 324 1.410882 CAGCAGTTCCTACCTAGCTCC 59.589 57.143 0.00 0.00 0.00 4.70
324 325 0.386113 GCAGTTCCTACCTAGCTCCG 59.614 60.000 0.00 0.00 0.00 4.63
325 326 0.386113 CAGTTCCTACCTAGCTCCGC 59.614 60.000 0.00 0.00 0.00 5.54
326 327 0.756070 AGTTCCTACCTAGCTCCGCC 60.756 60.000 0.00 0.00 0.00 6.13
327 328 1.041447 GTTCCTACCTAGCTCCGCCA 61.041 60.000 0.00 0.00 0.00 5.69
328 329 0.755698 TTCCTACCTAGCTCCGCCAG 60.756 60.000 0.00 0.00 0.00 4.85
329 330 1.455959 CCTACCTAGCTCCGCCAGT 60.456 63.158 0.00 0.00 0.00 4.00
330 331 1.736586 CTACCTAGCTCCGCCAGTG 59.263 63.158 0.00 0.00 0.00 3.66
331 332 2.356818 CTACCTAGCTCCGCCAGTGC 62.357 65.000 0.00 0.00 35.13 4.40
332 333 4.537433 CCTAGCTCCGCCAGTGCC 62.537 72.222 0.00 0.00 35.51 5.01
333 334 4.880537 CTAGCTCCGCCAGTGCCG 62.881 72.222 0.00 0.00 35.51 5.69
337 338 4.803426 CTCCGCCAGTGCCGTCTC 62.803 72.222 0.00 0.00 0.00 3.36
348 349 2.657237 CCGTCTCGGCCAAGAACT 59.343 61.111 2.24 0.00 41.17 3.01
349 350 1.738099 CCGTCTCGGCCAAGAACTG 60.738 63.158 2.24 0.00 41.17 3.16
350 351 1.289066 CGTCTCGGCCAAGAACTGA 59.711 57.895 2.24 0.00 0.00 3.41
351 352 0.319555 CGTCTCGGCCAAGAACTGAA 60.320 55.000 2.24 0.00 0.00 3.02
352 353 1.149148 GTCTCGGCCAAGAACTGAAC 58.851 55.000 2.24 0.00 0.00 3.18
353 354 0.756294 TCTCGGCCAAGAACTGAACA 59.244 50.000 2.24 0.00 0.00 3.18
354 355 0.868406 CTCGGCCAAGAACTGAACAC 59.132 55.000 2.24 0.00 0.00 3.32
355 356 0.878523 TCGGCCAAGAACTGAACACG 60.879 55.000 2.24 0.00 0.00 4.49
356 357 1.282875 GGCCAAGAACTGAACACGC 59.717 57.895 0.00 0.00 0.00 5.34
357 358 1.282875 GCCAAGAACTGAACACGCC 59.717 57.895 0.00 0.00 0.00 5.68
358 359 1.444119 GCCAAGAACTGAACACGCCA 61.444 55.000 0.00 0.00 0.00 5.69
359 360 1.238439 CCAAGAACTGAACACGCCAT 58.762 50.000 0.00 0.00 0.00 4.40
360 361 1.608590 CCAAGAACTGAACACGCCATT 59.391 47.619 0.00 0.00 0.00 3.16
361 362 2.605338 CCAAGAACTGAACACGCCATTG 60.605 50.000 0.00 0.00 0.00 2.82
362 363 0.593128 AGAACTGAACACGCCATTGC 59.407 50.000 0.00 0.00 0.00 3.56
372 373 2.807622 GCCATTGCGTGAATCCCC 59.192 61.111 0.00 0.00 0.00 4.81
373 374 2.785425 GCCATTGCGTGAATCCCCC 61.785 63.158 0.00 0.00 0.00 5.40
374 375 1.076777 CCATTGCGTGAATCCCCCT 60.077 57.895 0.00 0.00 0.00 4.79
375 376 0.684153 CCATTGCGTGAATCCCCCTT 60.684 55.000 0.00 0.00 0.00 3.95
376 377 0.457035 CATTGCGTGAATCCCCCTTG 59.543 55.000 0.00 0.00 0.00 3.61
377 378 0.684153 ATTGCGTGAATCCCCCTTGG 60.684 55.000 0.00 0.00 0.00 3.61
378 379 3.140814 GCGTGAATCCCCCTTGGC 61.141 66.667 0.00 0.00 0.00 4.52
379 380 2.440247 CGTGAATCCCCCTTGGCC 60.440 66.667 0.00 0.00 0.00 5.36
380 381 2.042944 GTGAATCCCCCTTGGCCC 60.043 66.667 0.00 0.00 0.00 5.80
381 382 2.204448 TGAATCCCCCTTGGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
382 383 2.280079 GAATCCCCCTTGGCCCTG 59.720 66.667 0.00 0.00 0.00 4.45
383 384 3.358824 AATCCCCCTTGGCCCTGG 61.359 66.667 0.00 1.41 0.00 4.45
395 396 4.918201 CCCTGGCCGATCGCTTCC 62.918 72.222 10.32 10.73 37.74 3.46
407 408 2.512515 GCTTCCGGCGCTGAGATT 60.513 61.111 20.25 0.00 0.00 2.40
408 409 2.817423 GCTTCCGGCGCTGAGATTG 61.817 63.158 20.25 10.13 0.00 2.67
409 410 1.153568 CTTCCGGCGCTGAGATTGA 60.154 57.895 20.25 2.34 0.00 2.57
410 411 0.531532 CTTCCGGCGCTGAGATTGAT 60.532 55.000 20.25 0.00 0.00 2.57
411 412 0.530650 TTCCGGCGCTGAGATTGATC 60.531 55.000 20.25 0.00 0.00 2.92
412 413 2.305853 CCGGCGCTGAGATTGATCG 61.306 63.158 20.25 2.69 0.00 3.69
413 414 2.934428 GGCGCTGAGATTGATCGC 59.066 61.111 7.64 0.00 44.39 4.58
414 415 2.543383 GCGCTGAGATTGATCGCG 59.457 61.111 0.00 0.00 41.63 5.87
415 416 1.946156 GCGCTGAGATTGATCGCGA 60.946 57.895 13.09 13.09 41.41 5.87
416 417 1.280886 GCGCTGAGATTGATCGCGAT 61.281 55.000 23.97 23.97 41.41 4.58
417 418 0.707276 CGCTGAGATTGATCGCGATC 59.293 55.000 36.16 36.16 41.41 3.69
418 419 1.066914 GCTGAGATTGATCGCGATCC 58.933 55.000 38.25 26.07 35.82 3.36
419 420 1.707632 CTGAGATTGATCGCGATCCC 58.292 55.000 38.25 27.98 35.82 3.85
420 421 0.039165 TGAGATTGATCGCGATCCCG 60.039 55.000 38.25 0.00 35.82 5.14
421 422 0.241213 GAGATTGATCGCGATCCCGA 59.759 55.000 38.25 26.70 41.98 5.14
422 423 0.039074 AGATTGATCGCGATCCCGAC 60.039 55.000 38.25 27.07 40.40 4.79
423 424 1.337817 GATTGATCGCGATCCCGACG 61.338 60.000 38.25 0.00 40.40 5.12
440 441 4.772687 GCCCCCTCCGTTCGTTCC 62.773 72.222 0.00 0.00 0.00 3.62
441 442 4.446413 CCCCCTCCGTTCGTTCCG 62.446 72.222 0.00 0.00 0.00 4.30
442 443 3.376078 CCCCTCCGTTCGTTCCGA 61.376 66.667 0.00 0.00 0.00 4.55
443 444 2.126189 CCCTCCGTTCGTTCCGAC 60.126 66.667 0.00 0.00 34.89 4.79
479 480 0.041224 GATGCAGATCACAGCGCATG 60.041 55.000 11.47 7.92 44.77 4.06
528 534 7.067496 TCTCTTCTTAACAGGTTGTCTTGAT 57.933 36.000 0.00 0.00 0.00 2.57
548 554 9.639563 TCTTGATTTAAAATACTATCATGGGCA 57.360 29.630 0.00 0.00 0.00 5.36
558 564 4.392940 ACTATCATGGGCAGTTAATCAGC 58.607 43.478 0.00 0.00 0.00 4.26
559 565 1.667236 TCATGGGCAGTTAATCAGCG 58.333 50.000 0.00 0.00 0.00 5.18
560 566 1.209261 TCATGGGCAGTTAATCAGCGA 59.791 47.619 0.00 0.00 0.00 4.93
586 592 3.583526 AGTCTAACCTTCAAAGAGGGTCC 59.416 47.826 1.06 0.00 41.22 4.46
632 639 2.624838 CCAACTCACATGGCTCAACTTT 59.375 45.455 0.00 0.00 0.00 2.66
634 641 3.996150 ACTCACATGGCTCAACTTTTG 57.004 42.857 0.00 0.00 0.00 2.44
635 642 2.624838 ACTCACATGGCTCAACTTTTGG 59.375 45.455 0.00 0.00 0.00 3.28
636 643 1.340889 TCACATGGCTCAACTTTTGGC 59.659 47.619 0.00 0.00 0.00 4.52
637 644 0.314935 ACATGGCTCAACTTTTGGCG 59.685 50.000 0.00 0.00 0.00 5.69
638 645 1.010419 CATGGCTCAACTTTTGGCGC 61.010 55.000 0.00 0.00 0.00 6.53
732 741 8.165239 TGCACTCAAGTTTGTTGATAATAGTT 57.835 30.769 0.00 0.00 0.00 2.24
861 870 3.545124 TTGTCCCACTCGCGCCATT 62.545 57.895 0.00 0.00 0.00 3.16
883 892 8.653338 CCATTTGTGTACGTATATATAAGGTGC 58.347 37.037 9.98 8.02 0.00 5.01
906 926 2.176546 CAGCGGTGCAATTCACGG 59.823 61.111 0.00 9.61 46.56 4.94
1004 1078 3.484407 GCATCAGCTGGATAAGAATGGT 58.516 45.455 15.13 0.00 37.91 3.55
1015 1089 4.476752 GAATGGTGGGCGCCGGTA 62.477 66.667 22.54 6.44 0.00 4.02
1105 1179 1.280746 GTTCACGGTGAGTCGACGA 59.719 57.895 10.46 0.00 0.00 4.20
1107 1181 2.434225 TTCACGGTGAGTCGACGACG 62.434 60.000 21.44 15.06 37.67 5.12
1180 1254 3.790437 CGCTCCACCCCAGCAGAT 61.790 66.667 0.00 0.00 36.61 2.90
1227 1301 0.469917 CACCACCAAGTGAGACACCT 59.530 55.000 0.00 0.00 40.34 4.00
1515 1610 3.775654 CTCGAAGGCCCCGAGCTT 61.776 66.667 25.71 2.27 45.37 3.74
1527 1622 1.289066 CGAGCTTGACACCCTTCGA 59.711 57.895 0.00 0.00 0.00 3.71
1541 1636 2.480759 CCCTTCGAGTATGTACCAACGG 60.481 54.545 0.00 0.00 0.00 4.44
1556 1651 2.760092 CCAACGGACATCCATTCCAAAT 59.240 45.455 0.00 0.00 35.14 2.32
1562 1657 7.181569 ACGGACATCCATTCCAAATTATTTT 57.818 32.000 0.00 0.00 35.14 1.82
1807 2007 1.213013 CGTCTTCTGGTGGGTCTCG 59.787 63.158 0.00 0.00 0.00 4.04
1906 2106 2.108514 CCATCCTGTGCGCGTCAAT 61.109 57.895 8.43 0.00 0.00 2.57
1982 2182 0.909610 GGTCTGGGAGATCCACCACA 60.910 60.000 0.47 1.17 41.46 4.17
2125 2325 1.315981 TTGGCAACTTTGTCGGTGCA 61.316 50.000 0.00 0.00 35.00 4.57
2179 2379 1.002366 CCATCTTCTTCTTCGCCGTG 58.998 55.000 0.00 0.00 0.00 4.94
2504 2704 1.059098 TGCATCAGAGGTGGACAACT 58.941 50.000 0.00 0.00 0.00 3.16
2551 2751 1.738099 GGCAGTGATCGCTGTCGTT 60.738 57.895 31.23 0.00 38.65 3.85
2611 2811 1.410004 TCGTGTGTGGAGACCTCTTT 58.590 50.000 0.00 0.00 0.00 2.52
2623 2823 2.028020 AGACCTCTTTCCCAACGATGTC 60.028 50.000 0.00 0.00 0.00 3.06
2809 3027 4.741781 GTGATGGCGCACGTGCAC 62.742 66.667 37.03 29.08 42.21 4.57
2884 3102 5.687730 CACACGTCTAGCTTATATTGACCAG 59.312 44.000 0.00 0.00 0.00 4.00
2979 3198 3.002759 GGAGCGTTATCCTTGAGCAATTC 59.997 47.826 0.00 0.00 36.35 2.17
3061 3330 8.131455 TGATTATAATTGAGTTCTTCGTGAGC 57.869 34.615 0.00 0.00 0.00 4.26
3132 3401 9.593134 AACAGTTTCAATATTGCAACTTGTTTA 57.407 25.926 24.91 1.37 40.80 2.01
3210 3479 2.664081 CCACTCACTGGGCTCCTCC 61.664 68.421 0.00 0.00 36.18 4.30
3231 3500 4.436998 GGTCGAGTGTGGCCGGAG 62.437 72.222 5.05 0.00 0.00 4.63
3283 3552 4.335400 TGAAAAATTCAAGTTCCAGGGC 57.665 40.909 0.00 0.00 36.59 5.19
3284 3553 3.243704 TGAAAAATTCAAGTTCCAGGGCG 60.244 43.478 0.00 0.00 36.59 6.13
3285 3554 2.286365 AAATTCAAGTTCCAGGGCGA 57.714 45.000 0.00 0.00 0.00 5.54
3286 3555 1.534729 AATTCAAGTTCCAGGGCGAC 58.465 50.000 0.00 0.00 0.00 5.19
3287 3556 0.693049 ATTCAAGTTCCAGGGCGACT 59.307 50.000 0.00 0.00 0.00 4.18
3288 3557 0.472471 TTCAAGTTCCAGGGCGACTT 59.528 50.000 0.00 2.36 34.14 3.01
3289 3558 0.472471 TCAAGTTCCAGGGCGACTTT 59.528 50.000 0.00 0.00 31.63 2.66
3290 3559 1.133915 TCAAGTTCCAGGGCGACTTTT 60.134 47.619 0.00 0.00 31.63 2.27
3291 3560 1.681264 CAAGTTCCAGGGCGACTTTTT 59.319 47.619 0.00 0.00 31.63 1.94
3292 3561 1.605753 AGTTCCAGGGCGACTTTTTC 58.394 50.000 0.00 0.00 0.00 2.29
3293 3562 1.143073 AGTTCCAGGGCGACTTTTTCT 59.857 47.619 0.00 0.00 0.00 2.52
3294 3563 1.266989 GTTCCAGGGCGACTTTTTCTG 59.733 52.381 0.00 0.00 0.00 3.02
3295 3564 0.889186 TCCAGGGCGACTTTTTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
3296 3565 1.172180 CCAGGGCGACTTTTTCTGCA 61.172 55.000 0.00 0.00 0.00 4.41
3297 3566 0.883833 CAGGGCGACTTTTTCTGCAT 59.116 50.000 0.00 0.00 0.00 3.96
3298 3567 1.135575 CAGGGCGACTTTTTCTGCATC 60.136 52.381 0.00 0.00 0.00 3.91
3299 3568 0.179189 GGGCGACTTTTTCTGCATCG 60.179 55.000 0.00 0.00 35.91 3.84
3300 3569 0.179189 GGCGACTTTTTCTGCATCGG 60.179 55.000 5.84 0.00 33.45 4.18
3301 3570 0.794605 GCGACTTTTTCTGCATCGGC 60.795 55.000 5.84 0.00 41.68 5.54
3302 3571 0.519175 CGACTTTTTCTGCATCGGCG 60.519 55.000 0.00 0.00 45.35 6.46
3303 3572 0.517316 GACTTTTTCTGCATCGGCGT 59.483 50.000 6.85 0.00 45.35 5.68
3304 3573 0.517316 ACTTTTTCTGCATCGGCGTC 59.483 50.000 6.85 0.00 45.35 5.19
3305 3574 0.519175 CTTTTTCTGCATCGGCGTCG 60.519 55.000 1.15 1.15 45.35 5.12
3306 3575 1.906994 TTTTTCTGCATCGGCGTCGG 61.907 55.000 10.62 0.00 45.35 4.79
3307 3576 2.773397 TTTTCTGCATCGGCGTCGGA 62.773 55.000 10.62 5.41 45.35 4.55
3308 3577 2.773397 TTTCTGCATCGGCGTCGGAA 62.773 55.000 10.62 11.25 45.35 4.30
3309 3578 2.773397 TTCTGCATCGGCGTCGGAAA 62.773 55.000 10.62 0.00 45.35 3.13
3310 3579 2.357638 TGCATCGGCGTCGGAAAA 60.358 55.556 10.62 0.00 45.35 2.29
3311 3580 1.906994 CTGCATCGGCGTCGGAAAAA 61.907 55.000 10.62 0.00 45.35 1.94
3395 3675 4.261781 GCGCCGTCTACCTACCCG 62.262 72.222 0.00 0.00 0.00 5.28
3420 3702 1.408822 CGCTAGAAAGGCCATTCCCTT 60.409 52.381 16.89 1.73 46.97 3.95
3466 3752 0.392998 GGAAGCCTCCATTTCGCTCA 60.393 55.000 0.00 0.00 41.96 4.26
3627 3914 4.814294 GGAAGCCGATGCCGACGT 62.814 66.667 0.00 0.00 38.69 4.34
3656 3943 2.685017 AGCGCCTCATGGTCCTCA 60.685 61.111 2.29 0.00 35.27 3.86
3658 3945 2.981302 CGCCTCATGGTCCTCACA 59.019 61.111 0.00 0.00 35.27 3.58
3659 3946 1.524002 CGCCTCATGGTCCTCACAT 59.476 57.895 0.00 0.00 35.27 3.21
3676 3963 0.036010 CATCTCTGGCCGACCTGTTT 60.036 55.000 0.00 0.00 36.34 2.83
3683 3970 3.423154 CCGACCTGTTTGCGAGCC 61.423 66.667 0.00 0.00 0.00 4.70
3763 4051 5.639506 GCATCGATTAGAAGGCTATTGCTTA 59.360 40.000 0.00 0.00 39.59 3.09
3835 4123 1.557443 GGCGCCGTTATCGAATGAGG 61.557 60.000 12.58 0.00 39.71 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.339151 GGGACTCGTTTCAGCCTTGAT 60.339 52.381 0.00 0.00 32.27 2.57
1 2 0.034896 GGGACTCGTTTCAGCCTTGA 59.965 55.000 0.00 0.00 0.00 3.02
2 3 0.035458 AGGGACTCGTTTCAGCCTTG 59.965 55.000 0.00 0.00 0.00 3.61
3 4 1.275573 GTAGGGACTCGTTTCAGCCTT 59.724 52.381 0.00 0.00 41.75 4.35
4 5 0.896226 GTAGGGACTCGTTTCAGCCT 59.104 55.000 0.00 0.00 41.75 4.58
5 6 0.108281 GGTAGGGACTCGTTTCAGCC 60.108 60.000 0.00 0.00 41.75 4.85
6 7 0.896226 AGGTAGGGACTCGTTTCAGC 59.104 55.000 0.00 0.00 41.75 4.26
7 8 2.943449 GAGGTAGGGACTCGTTTCAG 57.057 55.000 0.00 0.00 41.75 3.02
14 15 1.202675 ACTCGATCGAGGTAGGGACTC 60.203 57.143 39.70 0.00 45.88 3.36
15 16 0.838608 ACTCGATCGAGGTAGGGACT 59.161 55.000 39.70 19.89 45.88 3.85
16 17 1.228533 GACTCGATCGAGGTAGGGAC 58.771 60.000 39.70 21.29 45.88 4.46
17 18 3.702147 GACTCGATCGAGGTAGGGA 57.298 57.895 39.70 9.24 45.88 4.20
27 28 2.799540 GCCAAACGGCGACTCGATC 61.800 63.158 16.62 0.00 40.49 3.69
28 29 2.813908 GCCAAACGGCGACTCGAT 60.814 61.111 16.62 0.00 40.49 3.59
37 38 3.306206 GCGATTACTTGCCAAACGG 57.694 52.632 0.00 0.00 0.00 4.44
44 45 1.222115 CCTAGCCGGCGATTACTTGC 61.222 60.000 23.20 0.03 0.00 4.01
45 46 0.387929 TCCTAGCCGGCGATTACTTG 59.612 55.000 23.20 2.88 0.00 3.16
46 47 1.000955 CATCCTAGCCGGCGATTACTT 59.999 52.381 23.20 3.61 0.00 2.24
47 48 0.603569 CATCCTAGCCGGCGATTACT 59.396 55.000 23.20 4.49 0.00 2.24
48 49 0.317479 ACATCCTAGCCGGCGATTAC 59.683 55.000 23.20 0.00 0.00 1.89
49 50 0.601558 GACATCCTAGCCGGCGATTA 59.398 55.000 23.20 7.32 0.00 1.75
50 51 1.367840 GACATCCTAGCCGGCGATT 59.632 57.895 23.20 6.30 0.00 3.34
51 52 1.188219 ATGACATCCTAGCCGGCGAT 61.188 55.000 23.20 15.40 0.00 4.58
52 53 1.399744 AATGACATCCTAGCCGGCGA 61.400 55.000 23.20 16.40 0.00 5.54
53 54 0.946221 GAATGACATCCTAGCCGGCG 60.946 60.000 23.20 7.72 0.00 6.46
54 55 0.394565 AGAATGACATCCTAGCCGGC 59.605 55.000 21.89 21.89 0.00 6.13
55 56 1.001406 GGAGAATGACATCCTAGCCGG 59.999 57.143 0.00 0.00 32.51 6.13
56 57 1.688735 TGGAGAATGACATCCTAGCCG 59.311 52.381 0.00 0.00 36.50 5.52
57 58 3.845781 TTGGAGAATGACATCCTAGCC 57.154 47.619 0.00 0.00 36.50 3.93
58 59 5.371526 TGATTTGGAGAATGACATCCTAGC 58.628 41.667 0.00 0.00 36.50 3.42
59 60 7.870509 TTTGATTTGGAGAATGACATCCTAG 57.129 36.000 0.00 0.00 36.50 3.02
60 61 9.565090 CTATTTGATTTGGAGAATGACATCCTA 57.435 33.333 0.00 0.00 36.50 2.94
61 62 8.277197 TCTATTTGATTTGGAGAATGACATCCT 58.723 33.333 0.00 0.00 36.50 3.24
62 63 8.455903 TCTATTTGATTTGGAGAATGACATCC 57.544 34.615 0.00 0.00 36.05 3.51
63 64 8.074972 GCTCTATTTGATTTGGAGAATGACATC 58.925 37.037 0.00 0.00 0.00 3.06
64 65 7.014038 GGCTCTATTTGATTTGGAGAATGACAT 59.986 37.037 0.00 0.00 0.00 3.06
65 66 6.319658 GGCTCTATTTGATTTGGAGAATGACA 59.680 38.462 0.00 0.00 0.00 3.58
66 67 6.319658 TGGCTCTATTTGATTTGGAGAATGAC 59.680 38.462 0.00 0.00 0.00 3.06
67 68 6.425735 TGGCTCTATTTGATTTGGAGAATGA 58.574 36.000 0.00 0.00 0.00 2.57
68 69 6.704289 TGGCTCTATTTGATTTGGAGAATG 57.296 37.500 0.00 0.00 0.00 2.67
69 70 6.492772 GGATGGCTCTATTTGATTTGGAGAAT 59.507 38.462 0.00 0.00 0.00 2.40
70 71 5.829924 GGATGGCTCTATTTGATTTGGAGAA 59.170 40.000 0.00 0.00 0.00 2.87
71 72 5.103982 TGGATGGCTCTATTTGATTTGGAGA 60.104 40.000 0.00 0.00 0.00 3.71
72 73 5.135383 TGGATGGCTCTATTTGATTTGGAG 58.865 41.667 0.00 0.00 0.00 3.86
73 74 5.128033 TGGATGGCTCTATTTGATTTGGA 57.872 39.130 0.00 0.00 0.00 3.53
74 75 4.261909 GCTGGATGGCTCTATTTGATTTGG 60.262 45.833 0.00 0.00 0.00 3.28
75 76 4.556104 CGCTGGATGGCTCTATTTGATTTG 60.556 45.833 0.00 0.00 0.00 2.32
76 77 3.567164 CGCTGGATGGCTCTATTTGATTT 59.433 43.478 0.00 0.00 0.00 2.17
77 78 3.144506 CGCTGGATGGCTCTATTTGATT 58.855 45.455 0.00 0.00 0.00 2.57
78 79 2.775890 CGCTGGATGGCTCTATTTGAT 58.224 47.619 0.00 0.00 0.00 2.57
79 80 1.811558 GCGCTGGATGGCTCTATTTGA 60.812 52.381 0.00 0.00 0.00 2.69
80 81 0.590195 GCGCTGGATGGCTCTATTTG 59.410 55.000 0.00 0.00 0.00 2.32
81 82 0.882042 CGCGCTGGATGGCTCTATTT 60.882 55.000 5.56 0.00 0.00 1.40
82 83 1.301244 CGCGCTGGATGGCTCTATT 60.301 57.895 5.56 0.00 0.00 1.73
83 84 2.203082 TCGCGCTGGATGGCTCTAT 61.203 57.895 5.56 0.00 0.00 1.98
84 85 2.833121 TCGCGCTGGATGGCTCTA 60.833 61.111 5.56 0.00 0.00 2.43
85 86 4.521062 GTCGCGCTGGATGGCTCT 62.521 66.667 5.56 0.00 0.00 4.09
86 87 4.521062 AGTCGCGCTGGATGGCTC 62.521 66.667 5.56 0.00 0.00 4.70
87 88 4.827087 CAGTCGCGCTGGATGGCT 62.827 66.667 18.78 0.00 41.42 4.75
88 89 4.819761 TCAGTCGCGCTGGATGGC 62.820 66.667 23.70 0.00 45.08 4.40
89 90 2.107750 ATCAGTCGCGCTGGATGG 59.892 61.111 23.70 5.04 45.08 3.51
90 91 2.242572 CCATCAGTCGCGCTGGATG 61.243 63.158 23.70 21.71 45.08 3.51
91 92 2.107750 CCATCAGTCGCGCTGGAT 59.892 61.111 23.70 13.58 45.08 3.41
92 93 4.147449 CCCATCAGTCGCGCTGGA 62.147 66.667 23.70 12.06 45.08 3.86
93 94 4.147449 TCCCATCAGTCGCGCTGG 62.147 66.667 23.70 14.65 45.08 4.85
94 95 2.584418 CTCCCATCAGTCGCGCTG 60.584 66.667 19.99 19.99 46.34 5.18
95 96 2.755876 TCTCCCATCAGTCGCGCT 60.756 61.111 5.56 0.00 0.00 5.92
96 97 2.279120 CTCTCCCATCAGTCGCGC 60.279 66.667 0.00 0.00 0.00 6.86
97 98 1.064946 GTCTCTCCCATCAGTCGCG 59.935 63.158 0.00 0.00 0.00 5.87
98 99 0.102120 CTGTCTCTCCCATCAGTCGC 59.898 60.000 0.00 0.00 0.00 5.19
99 100 1.403679 GTCTGTCTCTCCCATCAGTCG 59.596 57.143 0.00 0.00 0.00 4.18
100 101 1.403679 CGTCTGTCTCTCCCATCAGTC 59.596 57.143 0.00 0.00 0.00 3.51
101 102 1.468985 CGTCTGTCTCTCCCATCAGT 58.531 55.000 0.00 0.00 0.00 3.41
102 103 0.102120 GCGTCTGTCTCTCCCATCAG 59.898 60.000 0.00 0.00 0.00 2.90
103 104 1.657751 CGCGTCTGTCTCTCCCATCA 61.658 60.000 0.00 0.00 0.00 3.07
104 105 1.064946 CGCGTCTGTCTCTCCCATC 59.935 63.158 0.00 0.00 0.00 3.51
105 106 2.418910 CCGCGTCTGTCTCTCCCAT 61.419 63.158 4.92 0.00 0.00 4.00
106 107 3.062466 CCGCGTCTGTCTCTCCCA 61.062 66.667 4.92 0.00 0.00 4.37
107 108 4.500116 GCCGCGTCTGTCTCTCCC 62.500 72.222 4.92 0.00 0.00 4.30
108 109 4.500116 GGCCGCGTCTGTCTCTCC 62.500 72.222 4.92 0.00 0.00 3.71
109 110 2.875684 GAAGGCCGCGTCTGTCTCTC 62.876 65.000 4.92 0.00 0.00 3.20
110 111 2.992114 AAGGCCGCGTCTGTCTCT 60.992 61.111 4.92 0.00 0.00 3.10
111 112 2.507324 GAAGGCCGCGTCTGTCTC 60.507 66.667 4.92 0.00 0.00 3.36
112 113 4.421479 CGAAGGCCGCGTCTGTCT 62.421 66.667 4.92 0.00 0.00 3.41
113 114 3.701604 ATCGAAGGCCGCGTCTGTC 62.702 63.158 18.32 0.00 38.37 3.51
114 115 3.701604 GATCGAAGGCCGCGTCTGT 62.702 63.158 18.32 6.01 38.37 3.41
115 116 2.956964 GATCGAAGGCCGCGTCTG 60.957 66.667 18.32 5.60 38.37 3.51
116 117 4.208686 GGATCGAAGGCCGCGTCT 62.209 66.667 18.32 9.11 38.37 4.18
117 118 4.508128 TGGATCGAAGGCCGCGTC 62.508 66.667 18.32 14.66 38.37 5.19
118 119 4.814294 GTGGATCGAAGGCCGCGT 62.814 66.667 18.32 8.04 38.37 6.01
119 120 4.514577 AGTGGATCGAAGGCCGCG 62.515 66.667 13.90 13.90 37.79 6.46
120 121 2.125106 AAGTGGATCGAAGGCCGC 60.125 61.111 0.00 7.55 38.37 6.53
121 122 2.464459 GCAAGTGGATCGAAGGCCG 61.464 63.158 0.00 0.00 40.25 6.13
122 123 2.115291 GGCAAGTGGATCGAAGGCC 61.115 63.158 0.00 0.00 0.00 5.19
123 124 1.372087 CTGGCAAGTGGATCGAAGGC 61.372 60.000 0.00 0.00 0.00 4.35
124 125 0.745845 CCTGGCAAGTGGATCGAAGG 60.746 60.000 0.00 0.00 0.00 3.46
125 126 0.250234 TCCTGGCAAGTGGATCGAAG 59.750 55.000 0.00 0.00 0.00 3.79
126 127 0.911769 ATCCTGGCAAGTGGATCGAA 59.088 50.000 1.11 0.00 38.60 3.71
127 128 0.465705 GATCCTGGCAAGTGGATCGA 59.534 55.000 15.87 0.00 46.01 3.59
128 129 2.997899 GATCCTGGCAAGTGGATCG 58.002 57.895 15.87 0.00 46.01 3.69
130 131 1.274703 ACGGATCCTGGCAAGTGGAT 61.275 55.000 10.75 6.47 44.91 3.41
131 132 1.899437 GACGGATCCTGGCAAGTGGA 61.899 60.000 10.75 0.00 36.72 4.02
132 133 1.450312 GACGGATCCTGGCAAGTGG 60.450 63.158 10.75 0.00 0.00 4.00
133 134 0.460987 GAGACGGATCCTGGCAAGTG 60.461 60.000 10.75 0.00 0.00 3.16
134 135 1.901085 GAGACGGATCCTGGCAAGT 59.099 57.895 10.75 0.00 0.00 3.16
135 136 1.227089 CGAGACGGATCCTGGCAAG 60.227 63.158 10.75 0.46 0.00 4.01
136 137 2.892640 CGAGACGGATCCTGGCAA 59.107 61.111 10.75 0.00 0.00 4.52
137 138 3.838271 GCGAGACGGATCCTGGCA 61.838 66.667 10.75 0.00 35.78 4.92
138 139 3.781770 CTGCGAGACGGATCCTGGC 62.782 68.421 10.75 5.72 36.18 4.85
139 140 2.415010 CTGCGAGACGGATCCTGG 59.585 66.667 10.75 0.00 0.00 4.45
140 141 1.226802 CACTGCGAGACGGATCCTG 60.227 63.158 10.75 6.11 0.00 3.86
141 142 2.418910 CCACTGCGAGACGGATCCT 61.419 63.158 10.75 0.00 0.00 3.24
142 143 2.105128 CCACTGCGAGACGGATCC 59.895 66.667 0.00 0.00 0.00 3.36
143 144 2.583593 GCCACTGCGAGACGGATC 60.584 66.667 0.00 0.00 0.00 3.36
153 154 2.176273 CACATAGCTCCGCCACTGC 61.176 63.158 0.00 0.00 0.00 4.40
154 155 0.459899 TACACATAGCTCCGCCACTG 59.540 55.000 0.00 0.00 0.00 3.66
155 156 1.137086 CTTACACATAGCTCCGCCACT 59.863 52.381 0.00 0.00 0.00 4.00
156 157 1.134788 ACTTACACATAGCTCCGCCAC 60.135 52.381 0.00 0.00 0.00 5.01
157 158 1.136305 GACTTACACATAGCTCCGCCA 59.864 52.381 0.00 0.00 0.00 5.69
158 159 1.409427 AGACTTACACATAGCTCCGCC 59.591 52.381 0.00 0.00 0.00 6.13
159 160 2.464865 CAGACTTACACATAGCTCCGC 58.535 52.381 0.00 0.00 0.00 5.54
160 161 2.223829 CCCAGACTTACACATAGCTCCG 60.224 54.545 0.00 0.00 0.00 4.63
161 162 2.103263 CCCCAGACTTACACATAGCTCC 59.897 54.545 0.00 0.00 0.00 4.70
162 163 2.103263 CCCCCAGACTTACACATAGCTC 59.897 54.545 0.00 0.00 0.00 4.09
163 164 2.119495 CCCCCAGACTTACACATAGCT 58.881 52.381 0.00 0.00 0.00 3.32
164 165 1.838077 ACCCCCAGACTTACACATAGC 59.162 52.381 0.00 0.00 0.00 2.97
165 166 2.420129 GCACCCCCAGACTTACACATAG 60.420 54.545 0.00 0.00 0.00 2.23
166 167 1.557832 GCACCCCCAGACTTACACATA 59.442 52.381 0.00 0.00 0.00 2.29
167 168 0.328258 GCACCCCCAGACTTACACAT 59.672 55.000 0.00 0.00 0.00 3.21
168 169 0.766674 AGCACCCCCAGACTTACACA 60.767 55.000 0.00 0.00 0.00 3.72
169 170 0.321653 CAGCACCCCCAGACTTACAC 60.322 60.000 0.00 0.00 0.00 2.90
170 171 0.766674 ACAGCACCCCCAGACTTACA 60.767 55.000 0.00 0.00 0.00 2.41
171 172 0.321653 CACAGCACCCCCAGACTTAC 60.322 60.000 0.00 0.00 0.00 2.34
172 173 1.488705 CCACAGCACCCCCAGACTTA 61.489 60.000 0.00 0.00 0.00 2.24
173 174 2.833913 CCACAGCACCCCCAGACTT 61.834 63.158 0.00 0.00 0.00 3.01
174 175 3.252284 CCACAGCACCCCCAGACT 61.252 66.667 0.00 0.00 0.00 3.24
198 199 6.633500 TCTTCATAGTTTGGTCCAAAGTTG 57.367 37.500 26.09 21.68 37.96 3.16
199 200 7.839680 AATCTTCATAGTTTGGTCCAAAGTT 57.160 32.000 26.09 15.87 37.96 2.66
200 201 7.839680 AAATCTTCATAGTTTGGTCCAAAGT 57.160 32.000 24.70 24.70 39.80 2.66
226 227 7.027874 TCTCATCTAAGCCCTTTCCTAAAAA 57.972 36.000 0.00 0.00 0.00 1.94
227 228 6.636454 TCTCATCTAAGCCCTTTCCTAAAA 57.364 37.500 0.00 0.00 0.00 1.52
228 229 6.636454 TTCTCATCTAAGCCCTTTCCTAAA 57.364 37.500 0.00 0.00 0.00 1.85
229 230 6.831664 ATTCTCATCTAAGCCCTTTCCTAA 57.168 37.500 0.00 0.00 0.00 2.69
230 231 6.831664 AATTCTCATCTAAGCCCTTTCCTA 57.168 37.500 0.00 0.00 0.00 2.94
231 232 5.723860 AATTCTCATCTAAGCCCTTTCCT 57.276 39.130 0.00 0.00 0.00 3.36
232 233 6.782082 AAAATTCTCATCTAAGCCCTTTCC 57.218 37.500 0.00 0.00 0.00 3.13
253 254 6.153000 TGTTTGAGGGTGTAAACTGCTAAAAA 59.847 34.615 0.00 0.00 37.60 1.94
254 255 5.652891 TGTTTGAGGGTGTAAACTGCTAAAA 59.347 36.000 0.00 0.00 37.60 1.52
255 256 5.066764 GTGTTTGAGGGTGTAAACTGCTAAA 59.933 40.000 0.00 0.00 37.60 1.85
256 257 4.577283 GTGTTTGAGGGTGTAAACTGCTAA 59.423 41.667 0.00 0.00 37.60 3.09
257 258 4.131596 GTGTTTGAGGGTGTAAACTGCTA 58.868 43.478 0.00 0.00 37.60 3.49
258 259 2.949644 GTGTTTGAGGGTGTAAACTGCT 59.050 45.455 0.00 0.00 37.60 4.24
259 260 2.034179 GGTGTTTGAGGGTGTAAACTGC 59.966 50.000 0.00 0.00 37.60 4.40
260 261 2.621526 GGGTGTTTGAGGGTGTAAACTG 59.378 50.000 0.00 0.00 37.60 3.16
261 262 2.242708 TGGGTGTTTGAGGGTGTAAACT 59.757 45.455 0.00 0.00 37.60 2.66
262 263 2.359848 GTGGGTGTTTGAGGGTGTAAAC 59.640 50.000 0.00 0.00 37.32 2.01
263 264 2.657143 GTGGGTGTTTGAGGGTGTAAA 58.343 47.619 0.00 0.00 0.00 2.01
264 265 1.475392 CGTGGGTGTTTGAGGGTGTAA 60.475 52.381 0.00 0.00 0.00 2.41
265 266 0.107081 CGTGGGTGTTTGAGGGTGTA 59.893 55.000 0.00 0.00 0.00 2.90
266 267 1.153046 CGTGGGTGTTTGAGGGTGT 60.153 57.895 0.00 0.00 0.00 4.16
267 268 1.147376 TCGTGGGTGTTTGAGGGTG 59.853 57.895 0.00 0.00 0.00 4.61
268 269 1.147600 GTCGTGGGTGTTTGAGGGT 59.852 57.895 0.00 0.00 0.00 4.34
269 270 0.179029 AAGTCGTGGGTGTTTGAGGG 60.179 55.000 0.00 0.00 0.00 4.30
270 271 2.413837 CTAAGTCGTGGGTGTTTGAGG 58.586 52.381 0.00 0.00 0.00 3.86
271 272 1.798813 GCTAAGTCGTGGGTGTTTGAG 59.201 52.381 0.00 0.00 0.00 3.02
272 273 1.541670 GGCTAAGTCGTGGGTGTTTGA 60.542 52.381 0.00 0.00 0.00 2.69
273 274 0.872388 GGCTAAGTCGTGGGTGTTTG 59.128 55.000 0.00 0.00 0.00 2.93
274 275 0.763035 AGGCTAAGTCGTGGGTGTTT 59.237 50.000 0.00 0.00 0.00 2.83
275 276 0.763035 AAGGCTAAGTCGTGGGTGTT 59.237 50.000 0.00 0.00 0.00 3.32
276 277 0.034896 CAAGGCTAAGTCGTGGGTGT 59.965 55.000 0.00 0.00 0.00 4.16
277 278 0.673644 CCAAGGCTAAGTCGTGGGTG 60.674 60.000 0.00 0.00 0.00 4.61
278 279 1.677552 CCAAGGCTAAGTCGTGGGT 59.322 57.895 0.00 0.00 0.00 4.51
279 280 1.745489 GCCAAGGCTAAGTCGTGGG 60.745 63.158 3.29 0.00 38.26 4.61
280 281 1.745489 GGCCAAGGCTAAGTCGTGG 60.745 63.158 11.40 0.00 41.60 4.94
281 282 1.745489 GGGCCAAGGCTAAGTCGTG 60.745 63.158 11.40 0.00 41.60 4.35
282 283 2.669240 GGGCCAAGGCTAAGTCGT 59.331 61.111 11.40 0.00 41.60 4.34
283 284 2.124695 GGGGCCAAGGCTAAGTCG 60.125 66.667 11.40 0.00 41.60 4.18
284 285 2.275748 GGGGGCCAAGGCTAAGTC 59.724 66.667 11.40 0.00 41.60 3.01
299 300 0.326238 TAGGTAGGAACTGCTGGGGG 60.326 60.000 0.00 0.00 42.03 5.40
300 301 1.123928 CTAGGTAGGAACTGCTGGGG 58.876 60.000 0.00 0.00 42.03 4.96
301 302 0.466124 GCTAGGTAGGAACTGCTGGG 59.534 60.000 0.00 0.00 42.03 4.45
302 303 1.410882 GAGCTAGGTAGGAACTGCTGG 59.589 57.143 0.00 0.00 42.03 4.85
303 304 1.410882 GGAGCTAGGTAGGAACTGCTG 59.589 57.143 0.00 0.00 42.03 4.41
304 305 1.783071 GGAGCTAGGTAGGAACTGCT 58.217 55.000 0.00 0.00 42.03 4.24
305 306 0.386113 CGGAGCTAGGTAGGAACTGC 59.614 60.000 0.00 0.00 41.52 4.40
332 333 0.319555 TTCAGTTCTTGGCCGAGACG 60.320 55.000 23.18 13.82 0.00 4.18
333 334 1.149148 GTTCAGTTCTTGGCCGAGAC 58.851 55.000 23.18 16.74 0.00 3.36
334 335 0.756294 TGTTCAGTTCTTGGCCGAGA 59.244 50.000 19.55 19.55 0.00 4.04
335 336 0.868406 GTGTTCAGTTCTTGGCCGAG 59.132 55.000 14.59 14.59 0.00 4.63
336 337 0.878523 CGTGTTCAGTTCTTGGCCGA 60.879 55.000 0.00 0.00 0.00 5.54
337 338 1.569493 CGTGTTCAGTTCTTGGCCG 59.431 57.895 0.00 0.00 0.00 6.13
338 339 1.282875 GCGTGTTCAGTTCTTGGCC 59.717 57.895 0.00 0.00 0.00 5.36
339 340 1.282875 GGCGTGTTCAGTTCTTGGC 59.717 57.895 0.00 0.00 0.00 4.52
340 341 1.238439 ATGGCGTGTTCAGTTCTTGG 58.762 50.000 0.00 0.00 0.00 3.61
341 342 2.653890 CAATGGCGTGTTCAGTTCTTG 58.346 47.619 0.00 0.00 0.00 3.02
342 343 1.001378 GCAATGGCGTGTTCAGTTCTT 60.001 47.619 0.00 0.00 0.00 2.52
343 344 0.593128 GCAATGGCGTGTTCAGTTCT 59.407 50.000 0.00 0.00 0.00 3.01
344 345 3.092081 GCAATGGCGTGTTCAGTTC 57.908 52.632 0.00 0.00 0.00 3.01
355 356 2.785425 GGGGGATTCACGCAATGGC 61.785 63.158 0.00 0.00 0.00 4.40
356 357 0.684153 AAGGGGGATTCACGCAATGG 60.684 55.000 5.71 0.00 0.00 3.16
357 358 0.457035 CAAGGGGGATTCACGCAATG 59.543 55.000 5.71 0.51 0.00 2.82
358 359 0.684153 CCAAGGGGGATTCACGCAAT 60.684 55.000 5.71 0.00 40.01 3.56
359 360 1.304052 CCAAGGGGGATTCACGCAA 60.304 57.895 5.71 0.00 40.01 4.85
360 361 2.354729 CCAAGGGGGATTCACGCA 59.645 61.111 5.71 0.00 40.01 5.24
361 362 3.140814 GCCAAGGGGGATTCACGC 61.141 66.667 0.00 0.00 40.01 5.34
362 363 2.440247 GGCCAAGGGGGATTCACG 60.440 66.667 0.00 0.00 40.01 4.35
363 364 2.042944 GGGCCAAGGGGGATTCAC 60.043 66.667 4.39 0.00 40.01 3.18
364 365 2.204448 AGGGCCAAGGGGGATTCA 60.204 61.111 6.18 0.00 40.01 2.57
365 366 2.280079 CAGGGCCAAGGGGGATTC 59.720 66.667 6.18 0.00 40.01 2.52
366 367 3.358824 CCAGGGCCAAGGGGGATT 61.359 66.667 6.18 0.00 40.01 3.01
378 379 4.918201 GGAAGCGATCGGCCAGGG 62.918 72.222 18.30 0.00 45.17 4.45
390 391 2.512515 AATCTCAGCGCCGGAAGC 60.513 61.111 5.05 10.49 38.52 3.86
391 392 0.531532 ATCAATCTCAGCGCCGGAAG 60.532 55.000 5.05 0.00 0.00 3.46
392 393 0.530650 GATCAATCTCAGCGCCGGAA 60.531 55.000 5.05 0.00 0.00 4.30
393 394 1.068083 GATCAATCTCAGCGCCGGA 59.932 57.895 5.05 0.37 0.00 5.14
394 395 2.305853 CGATCAATCTCAGCGCCGG 61.306 63.158 2.29 0.00 0.00 6.13
395 396 2.936570 GCGATCAATCTCAGCGCCG 61.937 63.158 2.29 0.00 41.65 6.46
396 397 2.934428 GCGATCAATCTCAGCGCC 59.066 61.111 2.29 0.00 41.65 6.53
397 398 2.543383 CGCGATCAATCTCAGCGC 59.457 61.111 0.00 0.00 44.19 5.92
399 400 1.066914 GGATCGCGATCAATCTCAGC 58.933 55.000 40.62 22.58 39.54 4.26
400 401 1.707632 GGGATCGCGATCAATCTCAG 58.292 55.000 40.62 0.00 39.54 3.35
401 402 0.039165 CGGGATCGCGATCAATCTCA 60.039 55.000 40.62 6.10 39.54 3.27
402 403 0.241213 TCGGGATCGCGATCAATCTC 59.759 55.000 40.62 26.66 39.54 2.75
403 404 0.039074 GTCGGGATCGCGATCAATCT 60.039 55.000 40.62 14.51 39.54 2.40
404 405 1.337817 CGTCGGGATCGCGATCAATC 61.338 60.000 40.62 29.31 39.54 2.67
405 406 1.371758 CGTCGGGATCGCGATCAAT 60.372 57.895 40.62 15.71 39.54 2.57
406 407 2.025584 CGTCGGGATCGCGATCAA 59.974 61.111 40.62 26.64 39.54 2.57
407 408 4.624117 GCGTCGGGATCGCGATCA 62.624 66.667 40.62 24.17 43.94 2.92
423 424 4.772687 GGAACGAACGGAGGGGGC 62.773 72.222 0.00 0.00 0.00 5.80
450 451 1.155042 GATCTGCATCCGATTGCCTC 58.845 55.000 7.02 0.00 42.06 4.70
451 452 0.471191 TGATCTGCATCCGATTGCCT 59.529 50.000 7.02 0.00 42.06 4.75
452 453 0.590195 GTGATCTGCATCCGATTGCC 59.410 55.000 7.02 0.00 42.06 4.52
453 454 1.263484 CTGTGATCTGCATCCGATTGC 59.737 52.381 0.00 2.95 43.07 3.56
454 455 1.263484 GCTGTGATCTGCATCCGATTG 59.737 52.381 0.00 0.00 38.20 2.67
455 456 1.590932 GCTGTGATCTGCATCCGATT 58.409 50.000 0.00 0.00 38.20 3.34
456 457 0.599466 CGCTGTGATCTGCATCCGAT 60.599 55.000 0.00 0.00 38.20 4.18
457 458 1.227060 CGCTGTGATCTGCATCCGA 60.227 57.895 0.00 0.00 38.20 4.55
458 459 2.879070 GCGCTGTGATCTGCATCCG 61.879 63.158 0.00 1.38 38.20 4.18
459 460 1.164662 ATGCGCTGTGATCTGCATCC 61.165 55.000 9.73 0.00 44.21 3.51
460 461 0.041224 CATGCGCTGTGATCTGCATC 60.041 55.000 9.73 0.00 45.64 3.91
461 462 4.553668 ATGCGCTGTGATCTGCAT 57.446 50.000 9.73 0.00 42.84 3.96
462 463 2.757056 GCATGCGCTGTGATCTGCA 61.757 57.895 9.73 0.00 42.22 4.41
463 464 2.024305 GCATGCGCTGTGATCTGC 59.976 61.111 9.73 2.62 34.30 4.26
464 465 0.041224 GATGCATGCGCTGTGATCTG 60.041 55.000 14.09 0.00 39.64 2.90
465 466 1.164662 GGATGCATGCGCTGTGATCT 61.165 55.000 14.09 0.00 39.64 2.75
479 480 4.889409 TGGAATGGTAAAGAAGATGGATGC 59.111 41.667 0.00 0.00 0.00 3.91
541 547 1.667236 TCGCTGATTAACTGCCCATG 58.333 50.000 0.00 0.00 39.71 3.66
545 551 1.063174 CTGCTTCGCTGATTAACTGCC 59.937 52.381 0.00 0.00 39.71 4.85
548 554 3.601443 AGACTGCTTCGCTGATTAACT 57.399 42.857 0.00 0.00 0.00 2.24
554 560 1.257743 AGGTTAGACTGCTTCGCTGA 58.742 50.000 0.00 0.00 0.00 4.26
558 564 4.307432 TCTTTGAAGGTTAGACTGCTTCG 58.693 43.478 0.00 0.00 0.00 3.79
559 565 4.693095 CCTCTTTGAAGGTTAGACTGCTTC 59.307 45.833 0.00 0.00 0.00 3.86
560 566 4.505742 CCCTCTTTGAAGGTTAGACTGCTT 60.506 45.833 0.00 0.00 34.34 3.91
565 571 3.326880 TGGACCCTCTTTGAAGGTTAGAC 59.673 47.826 0.00 0.00 34.34 2.59
567 573 4.072839 GTTGGACCCTCTTTGAAGGTTAG 58.927 47.826 0.00 0.00 34.34 2.34
568 574 3.460340 TGTTGGACCCTCTTTGAAGGTTA 59.540 43.478 0.00 0.00 34.34 2.85
586 592 8.442384 GGTTTCATAAAAATATGTGGCTTGTTG 58.558 33.333 0.00 0.00 0.00 3.33
632 639 0.107410 CCTATGTACCTTGGCGCCAA 60.107 55.000 37.78 37.78 0.00 4.52
634 641 1.892391 GCCTATGTACCTTGGCGCC 60.892 63.158 22.73 22.73 35.79 6.53
635 642 3.732470 GCCTATGTACCTTGGCGC 58.268 61.111 7.74 0.00 35.79 6.53
637 644 3.626217 GTGTTTAGCCTATGTACCTTGGC 59.374 47.826 14.11 14.11 45.21 4.52
638 645 4.196971 GGTGTTTAGCCTATGTACCTTGG 58.803 47.826 0.00 0.00 0.00 3.61
732 741 1.621814 GGCGGCTGGTATCCTTATACA 59.378 52.381 0.00 0.00 39.90 2.29
788 797 4.672409 CGGATATGATCATAAGTAGCGCA 58.328 43.478 19.03 0.00 0.00 6.09
799 808 0.387239 CGAGCACGCGGATATGATCA 60.387 55.000 12.47 0.00 30.55 2.92
906 926 0.250166 AACACGGACAGGTAGTTGGC 60.250 55.000 0.00 0.00 0.00 4.52
991 1048 0.465460 GCGCCCACCATTCTTATCCA 60.465 55.000 0.00 0.00 0.00 3.41
1015 1089 1.332375 CGTCAAAACGTCATGGTGGTT 59.668 47.619 0.00 0.00 43.94 3.67
1227 1301 1.276421 GGCTGCTGAACCTCACTTAGA 59.724 52.381 0.00 0.00 0.00 2.10
1270 1344 2.673523 GCCACCTCTGAGCACCAT 59.326 61.111 0.00 0.00 0.00 3.55
1429 1503 1.493950 GACGAGGCGCCATCATCAAG 61.494 60.000 31.54 12.17 0.00 3.02
1515 1610 2.756760 GGTACATACTCGAAGGGTGTCA 59.243 50.000 0.00 0.00 0.00 3.58
1527 1622 3.101437 TGGATGTCCGTTGGTACATACT 58.899 45.455 0.00 0.00 37.74 2.12
1562 1657 6.371595 ACCCATGATTTTGGCAGAAAAATA 57.628 33.333 0.00 0.00 39.31 1.40
1567 1758 4.097741 CGATTACCCATGATTTTGGCAGAA 59.902 41.667 0.00 0.00 35.29 3.02
1583 1776 2.856557 GCCGTTGTTAGAGACGATTACC 59.143 50.000 0.00 0.00 41.53 2.85
1906 2106 0.250124 TCGAGGGCGCAAAGAAGAAA 60.250 50.000 10.83 0.00 37.46 2.52
1982 2182 5.509840 GCAACATGAGGAGGTTATAGACGAT 60.510 44.000 0.00 0.00 0.00 3.73
2504 2704 3.276091 CAGTGCCCGCGTCAACAA 61.276 61.111 4.92 0.00 0.00 2.83
2623 2823 1.300465 CCTCGTGATGGCGATGGAG 60.300 63.158 0.00 0.00 40.29 3.86
2669 2869 1.005984 TGGACGACCGAATTTGCGA 60.006 52.632 0.00 0.00 39.42 5.10
2809 3027 1.586564 CGCCCGCTCTACTCTTTCG 60.587 63.158 0.00 0.00 0.00 3.46
2979 3198 5.759506 TTATTTACCACCATGGCAATACG 57.240 39.130 13.04 0.00 42.67 3.06
2993 3212 5.357596 TGGTTTACTCCCGCAATTATTTACC 59.642 40.000 0.00 0.00 0.00 2.85
3134 3403 9.509855 CAAACAAGTTGCAACATAACTAAAGTA 57.490 29.630 30.11 0.00 37.39 2.24
3135 3404 8.032451 ACAAACAAGTTGCAACATAACTAAAGT 58.968 29.630 30.11 14.24 41.31 2.66
3136 3405 8.406172 ACAAACAAGTTGCAACATAACTAAAG 57.594 30.769 30.11 13.66 41.31 1.85
3137 3406 8.651588 CAACAAACAAGTTGCAACATAACTAAA 58.348 29.630 30.11 0.00 41.95 1.85
3277 3546 1.172180 TGCAGAAAAAGTCGCCCTGG 61.172 55.000 0.00 0.00 0.00 4.45
3278 3547 0.883833 ATGCAGAAAAAGTCGCCCTG 59.116 50.000 0.00 0.00 0.00 4.45
3279 3548 1.168714 GATGCAGAAAAAGTCGCCCT 58.831 50.000 0.00 0.00 0.00 5.19
3280 3549 0.179189 CGATGCAGAAAAAGTCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
3281 3550 0.179189 CCGATGCAGAAAAAGTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
3282 3551 0.794605 GCCGATGCAGAAAAAGTCGC 60.795 55.000 0.00 0.00 37.47 5.19
3283 3552 0.519175 CGCCGATGCAGAAAAAGTCG 60.519 55.000 0.00 0.00 37.32 4.18
3284 3553 0.517316 ACGCCGATGCAGAAAAAGTC 59.483 50.000 0.00 0.00 37.32 3.01
3285 3554 0.517316 GACGCCGATGCAGAAAAAGT 59.483 50.000 0.00 0.00 37.32 2.66
3286 3555 0.519175 CGACGCCGATGCAGAAAAAG 60.519 55.000 0.00 0.00 38.22 2.27
3287 3556 1.495509 CGACGCCGATGCAGAAAAA 59.504 52.632 0.00 0.00 38.22 1.94
3288 3557 2.387445 CCGACGCCGATGCAGAAAA 61.387 57.895 0.00 0.00 38.22 2.29
3289 3558 2.773397 TTCCGACGCCGATGCAGAAA 62.773 55.000 0.00 0.00 38.22 2.52
3290 3559 2.773397 TTTCCGACGCCGATGCAGAA 62.773 55.000 0.00 0.00 38.22 3.02
3291 3560 2.773397 TTTTCCGACGCCGATGCAGA 62.773 55.000 0.00 0.00 38.22 4.26
3292 3561 1.906994 TTTTTCCGACGCCGATGCAG 61.907 55.000 0.00 0.00 38.22 4.41
3293 3562 1.961791 TTTTTCCGACGCCGATGCA 60.962 52.632 0.00 0.00 38.22 3.96
3294 3563 2.864589 TTTTTCCGACGCCGATGC 59.135 55.556 0.00 0.00 38.22 3.91
3310 3579 1.029681 GGACGAGCAACTGGGTTTTT 58.970 50.000 0.00 0.00 0.00 1.94
3311 3580 0.106918 TGGACGAGCAACTGGGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
3312 3581 0.535102 CTGGACGAGCAACTGGGTTT 60.535 55.000 0.00 0.00 0.00 3.27
3313 3582 1.071471 CTGGACGAGCAACTGGGTT 59.929 57.895 0.00 0.00 0.00 4.11
3314 3583 1.194781 ATCTGGACGAGCAACTGGGT 61.195 55.000 0.00 0.00 0.00 4.51
3315 3584 0.036010 AATCTGGACGAGCAACTGGG 60.036 55.000 0.00 0.00 0.00 4.45
3316 3585 1.363744 GAATCTGGACGAGCAACTGG 58.636 55.000 0.00 0.00 0.00 4.00
3317 3586 0.994995 CGAATCTGGACGAGCAACTG 59.005 55.000 0.00 0.00 0.00 3.16
3318 3587 0.737715 GCGAATCTGGACGAGCAACT 60.738 55.000 0.00 0.00 0.00 3.16
3319 3588 1.696832 GGCGAATCTGGACGAGCAAC 61.697 60.000 0.00 0.00 0.00 4.17
3449 3735 1.386533 CATGAGCGAAATGGAGGCTT 58.613 50.000 0.00 0.00 37.10 4.35
3499 3786 3.894547 AACTGCCGGTAACCCTGCG 62.895 63.158 1.90 0.00 43.41 5.18
3598 3885 2.588989 GCTTCCTCCTCCAGCAGG 59.411 66.667 0.00 0.00 45.15 4.85
3630 3917 3.082579 ATGAGGCGCTCTTCGTCCC 62.083 63.158 7.64 0.00 45.48 4.46
3642 3929 0.835941 AGATGTGAGGACCATGAGGC 59.164 55.000 0.00 0.00 39.06 4.70
3656 3943 1.194781 AACAGGTCGGCCAGAGATGT 61.195 55.000 9.71 0.00 37.19 3.06
3658 3945 0.036010 CAAACAGGTCGGCCAGAGAT 60.036 55.000 9.71 0.00 37.19 2.75
3659 3946 1.371183 CAAACAGGTCGGCCAGAGA 59.629 57.895 9.71 0.00 37.19 3.10
3676 3963 3.751246 GGCTTTGCATGGCTCGCA 61.751 61.111 10.48 0.00 37.68 5.10
3763 4051 1.005340 CGAAGTAGTCGGCGTAGAGT 58.995 55.000 6.85 0.00 46.45 3.24
3803 4091 0.725117 CGGCGCCGAAATACTTTCTT 59.275 50.000 44.86 0.00 42.83 2.52
3835 4123 0.247736 TCCTGAGGAAGAGCTTTCGC 59.752 55.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.