Multiple sequence alignment - TraesCS1B01G454100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G454100 chr1B 100.000 4680 0 0 1 4680 670033275 670037954 0.000000e+00 8643.0
1 TraesCS1B01G454100 chr1B 98.965 2319 16 4 923 3237 670167764 670165450 0.000000e+00 4143.0
2 TraesCS1B01G454100 chr1B 92.116 723 35 5 3893 4594 405388501 405389222 0.000000e+00 1000.0
3 TraesCS1B01G454100 chr1B 95.035 423 8 4 3279 3694 670165449 670165033 0.000000e+00 652.0
4 TraesCS1B01G454100 chr1B 90.271 442 23 11 2 434 670168516 670168086 1.140000e-155 560.0
5 TraesCS1B01G454100 chr1B 78.252 469 75 23 2275 2738 670172076 670171630 4.610000e-70 276.0
6 TraesCS1B01G454100 chr1B 78.252 469 75 23 2275 2738 670182921 670182475 4.610000e-70 276.0
7 TraesCS1B01G454100 chr1B 74.614 713 140 31 1094 1794 670184412 670183729 4.610000e-70 276.0
8 TraesCS1B01G454100 chr1B 95.181 166 7 1 734 898 670167999 670167834 1.290000e-65 261.0
9 TraesCS1B01G454100 chr1B 77.399 469 79 21 2275 2738 670026950 670027396 2.160000e-63 254.0
10 TraesCS1B01G454100 chr1B 91.515 165 10 3 3735 3895 634243546 634243710 1.690000e-54 224.0
11 TraesCS1B01G454100 chr1B 83.412 211 30 4 1094 1303 670178785 670178579 1.720000e-44 191.0
12 TraesCS1B01G454100 chr1B 100.000 71 0 0 500 570 670168071 670168001 1.060000e-26 132.0
13 TraesCS1B01G454100 chr1B 100.000 38 0 0 4593 4630 670037831 670037868 2.340000e-08 71.3
14 TraesCS1B01G454100 chr1A 85.038 1691 205 23 2021 3705 578197552 578199200 0.000000e+00 1677.0
15 TraesCS1B01G454100 chr1A 89.301 944 84 13 923 1860 578196409 578197341 0.000000e+00 1168.0
16 TraesCS1B01G454100 chr1A 78.635 337 57 12 1049 1382 578022014 578022338 4.750000e-50 209.0
17 TraesCS1B01G454100 chr1A 81.905 210 19 9 1440 1639 540715498 540715298 4.850000e-35 159.0
18 TraesCS1B01G454100 chr1A 76.613 248 42 9 3 243 241360135 241359897 6.360000e-24 122.0
19 TraesCS1B01G454100 chr1D 84.638 1712 174 46 2021 3712 481465799 481464157 0.000000e+00 1622.0
20 TraesCS1B01G454100 chr1D 91.415 862 65 5 994 1846 481466882 481466021 0.000000e+00 1173.0
21 TraesCS1B01G454100 chr1D 85.442 1154 112 24 733 1856 481498000 481499127 0.000000e+00 1149.0
22 TraesCS1B01G454100 chr1D 75.105 711 143 26 1066 1768 481476325 481475641 7.610000e-78 302.0
23 TraesCS1B01G454100 chr1D 76.549 597 112 21 1066 1657 481563928 481564501 7.610000e-78 302.0
24 TraesCS1B01G454100 chr1D 91.908 173 14 0 570 742 301948633 301948805 4.680000e-60 243.0
25 TraesCS1B01G454100 chr1D 81.071 280 34 13 1361 1639 489971609 489971870 6.140000e-49 206.0
26 TraesCS1B01G454100 chr1D 80.435 138 26 1 2 138 405188302 405188439 2.300000e-18 104.0
27 TraesCS1B01G454100 chr7B 91.108 731 46 12 3896 4610 107643553 107642826 0.000000e+00 972.0
28 TraesCS1B01G454100 chr7B 75.197 254 34 26 2 242 129931145 129931382 4.990000e-15 93.5
29 TraesCS1B01G454100 chr3B 86.790 757 76 18 3886 4633 764457019 764457760 0.000000e+00 822.0
30 TraesCS1B01G454100 chr3B 86.078 747 86 13 3894 4632 764524240 764524976 0.000000e+00 787.0
31 TraesCS1B01G454100 chr6B 95.500 400 18 0 3892 4291 57747342 57747741 1.420000e-179 640.0
32 TraesCS1B01G454100 chr6B 89.759 332 34 0 4263 4594 57747755 57748086 4.330000e-115 425.0
33 TraesCS1B01G454100 chr6D 93.750 416 24 2 3895 4309 93885013 93884599 1.430000e-174 623.0
34 TraesCS1B01G454100 chr6D 93.393 333 17 4 4279 4610 93884586 93884258 5.440000e-134 488.0
35 TraesCS1B01G454100 chr6D 92.571 175 12 1 562 735 260024683 260024509 2.800000e-62 250.0
36 TraesCS1B01G454100 chr2D 82.290 751 87 29 3895 4633 407210509 407209793 4.000000e-170 608.0
37 TraesCS1B01G454100 chr2D 83.922 510 59 11 3890 4386 80979952 80979453 2.550000e-127 466.0
38 TraesCS1B01G454100 chr2D 94.512 164 9 0 571 734 130727510 130727673 2.160000e-63 254.0
39 TraesCS1B01G454100 chr2D 93.333 165 11 0 571 735 67303371 67303535 1.300000e-60 244.0
40 TraesCS1B01G454100 chr5D 81.242 789 86 31 3895 4633 522485583 522484807 8.730000e-162 580.0
41 TraesCS1B01G454100 chr5D 76.639 244 38 12 2 243 63120555 63120329 2.960000e-22 117.0
42 TraesCS1B01G454100 chr3D 81.326 739 90 39 3893 4610 40715257 40714546 1.470000e-154 556.0
43 TraesCS1B01G454100 chr3D 93.333 165 11 0 570 734 496740126 496739962 1.300000e-60 244.0
44 TraesCS1B01G454100 chr7D 81.148 366 51 17 4279 4633 140794890 140795248 1.280000e-70 278.0
45 TraesCS1B01G454100 chr5B 78.478 460 50 29 4190 4633 74688901 74688475 6.010000e-64 255.0
46 TraesCS1B01G454100 chr6A 92.571 175 12 1 562 735 370675431 370675605 2.800000e-62 250.0
47 TraesCS1B01G454100 chr4D 93.452 168 11 0 570 737 391158574 391158407 2.800000e-62 250.0
48 TraesCS1B01G454100 chr4D 92.000 50 2 2 1334 1382 502425858 502425810 8.400000e-08 69.4
49 TraesCS1B01G454100 chr5A 92.045 176 11 3 570 744 536857594 536857767 1.300000e-60 244.0
50 TraesCS1B01G454100 chr5A 77.600 250 39 9 2 242 636936913 636936672 8.170000e-28 135.0
51 TraesCS1B01G454100 chr5A 92.000 50 2 2 1334 1382 685581211 685581163 8.400000e-08 69.4
52 TraesCS1B01G454100 chr2A 91.954 174 14 0 564 737 20793483 20793310 1.300000e-60 244.0
53 TraesCS1B01G454100 chr4A 84.615 91 12 2 2 91 715969942 715970031 6.450000e-14 89.8
54 TraesCS1B01G454100 chr4B 80.645 93 14 4 1334 1424 646818753 646818663 8.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G454100 chr1B 670033275 670037954 4679 False 4357.150000 8643 100.000000 1 4680 2 chr1B.!!$F4 4679
1 TraesCS1B01G454100 chr1B 670165033 670172076 7043 True 1004.000000 4143 92.950667 2 3694 6 chr1B.!!$R1 3692
2 TraesCS1B01G454100 chr1B 405388501 405389222 721 False 1000.000000 1000 92.116000 3893 4594 1 chr1B.!!$F1 701
3 TraesCS1B01G454100 chr1B 670178579 670184412 5833 True 247.666667 276 78.759333 1094 2738 3 chr1B.!!$R2 1644
4 TraesCS1B01G454100 chr1A 578196409 578199200 2791 False 1422.500000 1677 87.169500 923 3705 2 chr1A.!!$F2 2782
5 TraesCS1B01G454100 chr1D 481464157 481466882 2725 True 1397.500000 1622 88.026500 994 3712 2 chr1D.!!$R2 2718
6 TraesCS1B01G454100 chr1D 481498000 481499127 1127 False 1149.000000 1149 85.442000 733 1856 1 chr1D.!!$F3 1123
7 TraesCS1B01G454100 chr1D 481475641 481476325 684 True 302.000000 302 75.105000 1066 1768 1 chr1D.!!$R1 702
8 TraesCS1B01G454100 chr1D 481563928 481564501 573 False 302.000000 302 76.549000 1066 1657 1 chr1D.!!$F4 591
9 TraesCS1B01G454100 chr7B 107642826 107643553 727 True 972.000000 972 91.108000 3896 4610 1 chr7B.!!$R1 714
10 TraesCS1B01G454100 chr3B 764457019 764457760 741 False 822.000000 822 86.790000 3886 4633 1 chr3B.!!$F1 747
11 TraesCS1B01G454100 chr3B 764524240 764524976 736 False 787.000000 787 86.078000 3894 4632 1 chr3B.!!$F2 738
12 TraesCS1B01G454100 chr6B 57747342 57748086 744 False 532.500000 640 92.629500 3892 4594 2 chr6B.!!$F1 702
13 TraesCS1B01G454100 chr6D 93884258 93885013 755 True 555.500000 623 93.571500 3895 4610 2 chr6D.!!$R2 715
14 TraesCS1B01G454100 chr2D 407209793 407210509 716 True 608.000000 608 82.290000 3895 4633 1 chr2D.!!$R2 738
15 TraesCS1B01G454100 chr5D 522484807 522485583 776 True 580.000000 580 81.242000 3895 4633 1 chr5D.!!$R2 738
16 TraesCS1B01G454100 chr3D 40714546 40715257 711 True 556.000000 556 81.326000 3893 4610 1 chr3D.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 4012 0.034337 TAACGTGAACACTGCCCTCC 59.966 55.0 0.0 0.0 0.0 4.30 F
450 4016 0.108585 GTGAACACTGCCCTCCTGAA 59.891 55.0 0.0 0.0 0.0 3.02 F
921 4513 0.246635 CCCGAGTTGTAGTGAGTGGG 59.753 60.0 0.0 0.0 0.0 4.61 F
1127 4757 0.640768 GAATTCGACGACAAGAGCCG 59.359 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 5278 2.037901 CAGCTGAGCTAAGATCTGGGA 58.962 52.381 8.42 0.0 36.40 4.37 R
3233 7430 2.338500 GTCACGATCTCAAGGACCAAC 58.662 52.381 0.00 0.0 0.00 3.77 R
3444 7771 1.627879 CGACTCTGAGAAGCTCTTGC 58.372 55.000 12.44 0.0 40.05 4.01 R
3865 8204 0.033781 TAGCACCAACCCACGTACAC 59.966 55.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 3616 2.735772 CCCCATAGCAGAGCACCGT 61.736 63.158 0.00 0.00 0.00 4.83
87 3647 1.614317 CCACCACCAGAAACCAGATCC 60.614 57.143 0.00 0.00 0.00 3.36
94 3654 1.153901 GAAACCAGATCCGCGTCGA 60.154 57.895 4.92 0.00 0.00 4.20
98 3658 4.175489 CAGATCCGCGTCGACCGT 62.175 66.667 20.03 7.27 39.32 4.83
129 3689 4.082523 CCTGGATCACACCGCCGT 62.083 66.667 0.00 0.00 0.00 5.68
134 3694 2.358247 ATCACACCGCCGTCCAAC 60.358 61.111 0.00 0.00 0.00 3.77
135 3695 3.894547 ATCACACCGCCGTCCAACC 62.895 63.158 0.00 0.00 0.00 3.77
136 3696 4.920112 CACACCGCCGTCCAACCA 62.920 66.667 0.00 0.00 0.00 3.67
137 3697 4.178169 ACACCGCCGTCCAACCAA 62.178 61.111 0.00 0.00 0.00 3.67
138 3698 3.353836 CACCGCCGTCCAACCAAG 61.354 66.667 0.00 0.00 0.00 3.61
139 3699 3.552384 ACCGCCGTCCAACCAAGA 61.552 61.111 0.00 0.00 0.00 3.02
140 3700 2.742372 CCGCCGTCCAACCAAGAG 60.742 66.667 0.00 0.00 0.00 2.85
141 3701 2.030562 CGCCGTCCAACCAAGAGT 59.969 61.111 0.00 0.00 0.00 3.24
156 3716 0.249911 AGAGTCCAAGACAACCGTGC 60.250 55.000 0.00 0.00 34.60 5.34
157 3717 0.249911 GAGTCCAAGACAACCGTGCT 60.250 55.000 0.00 0.00 34.60 4.40
176 3736 2.833227 CCCCAACACCTCCACGAA 59.167 61.111 0.00 0.00 0.00 3.85
184 3744 2.214920 ACCTCCACGAACACCTCCC 61.215 63.158 0.00 0.00 0.00 4.30
189 3749 3.308705 ACGAACACCTCCCGGACC 61.309 66.667 0.73 0.00 0.00 4.46
201 3761 3.849951 CGGACCGCACCTGCCTAT 61.850 66.667 0.00 0.00 37.91 2.57
207 3767 2.872388 CGCACCTGCCTATCCGGAT 61.872 63.158 22.95 22.95 37.91 4.18
208 3768 1.532604 CGCACCTGCCTATCCGGATA 61.533 60.000 22.71 22.71 37.91 2.59
442 4008 8.306680 ACATATATTATAACGTGAACACTGCC 57.693 34.615 0.00 0.00 0.00 4.85
443 4009 7.386848 ACATATATTATAACGTGAACACTGCCC 59.613 37.037 0.00 0.00 0.00 5.36
445 4011 2.094762 ATAACGTGAACACTGCCCTC 57.905 50.000 0.00 0.00 0.00 4.30
446 4012 0.034337 TAACGTGAACACTGCCCTCC 59.966 55.000 0.00 0.00 0.00 4.30
448 4014 1.669115 CGTGAACACTGCCCTCCTG 60.669 63.158 3.51 0.00 0.00 3.86
449 4015 1.754745 GTGAACACTGCCCTCCTGA 59.245 57.895 0.00 0.00 0.00 3.86
450 4016 0.108585 GTGAACACTGCCCTCCTGAA 59.891 55.000 0.00 0.00 0.00 3.02
451 4017 0.843309 TGAACACTGCCCTCCTGAAA 59.157 50.000 0.00 0.00 0.00 2.69
452 4018 1.425066 TGAACACTGCCCTCCTGAAAT 59.575 47.619 0.00 0.00 0.00 2.17
453 4019 1.815003 GAACACTGCCCTCCTGAAATG 59.185 52.381 0.00 0.00 0.00 2.32
454 4020 1.067295 ACACTGCCCTCCTGAAATGA 58.933 50.000 0.00 0.00 0.00 2.57
455 4021 1.637553 ACACTGCCCTCCTGAAATGAT 59.362 47.619 0.00 0.00 0.00 2.45
456 4022 2.846206 ACACTGCCCTCCTGAAATGATA 59.154 45.455 0.00 0.00 0.00 2.15
457 4023 3.266772 ACACTGCCCTCCTGAAATGATAA 59.733 43.478 0.00 0.00 0.00 1.75
458 4024 4.079558 ACACTGCCCTCCTGAAATGATAAT 60.080 41.667 0.00 0.00 0.00 1.28
459 4025 4.518211 CACTGCCCTCCTGAAATGATAATC 59.482 45.833 0.00 0.00 0.00 1.75
460 4026 3.743521 TGCCCTCCTGAAATGATAATCG 58.256 45.455 0.00 0.00 0.00 3.34
461 4027 3.077359 GCCCTCCTGAAATGATAATCGG 58.923 50.000 0.00 0.00 0.00 4.18
462 4028 3.077359 CCCTCCTGAAATGATAATCGGC 58.923 50.000 0.00 0.00 0.00 5.54
463 4029 3.496692 CCCTCCTGAAATGATAATCGGCA 60.497 47.826 0.00 0.00 0.00 5.69
464 4030 4.136796 CCTCCTGAAATGATAATCGGCAA 58.863 43.478 0.00 0.00 0.00 4.52
465 4031 4.763793 CCTCCTGAAATGATAATCGGCAAT 59.236 41.667 0.00 0.00 0.00 3.56
466 4032 5.939883 CCTCCTGAAATGATAATCGGCAATA 59.060 40.000 0.00 0.00 0.00 1.90
467 4033 6.093219 CCTCCTGAAATGATAATCGGCAATAG 59.907 42.308 0.00 0.00 0.00 1.73
468 4034 5.412594 TCCTGAAATGATAATCGGCAATAGC 59.587 40.000 0.00 0.00 41.10 2.97
469 4035 5.281693 TGAAATGATAATCGGCAATAGCG 57.718 39.130 0.00 0.00 43.41 4.26
470 4036 4.994217 TGAAATGATAATCGGCAATAGCGA 59.006 37.500 0.00 0.00 43.41 4.93
471 4037 5.120674 TGAAATGATAATCGGCAATAGCGAG 59.879 40.000 0.00 0.00 43.41 5.03
472 4038 3.934457 TGATAATCGGCAATAGCGAGA 57.066 42.857 0.00 0.00 43.41 4.04
473 4039 3.575630 TGATAATCGGCAATAGCGAGAC 58.424 45.455 0.00 0.00 43.41 3.36
474 4040 3.005367 TGATAATCGGCAATAGCGAGACA 59.995 43.478 0.00 0.00 43.41 3.41
475 4041 1.571919 AATCGGCAATAGCGAGACAC 58.428 50.000 0.00 0.00 43.41 3.67
476 4042 0.747255 ATCGGCAATAGCGAGACACT 59.253 50.000 0.00 0.00 43.41 3.55
477 4043 1.385528 TCGGCAATAGCGAGACACTA 58.614 50.000 0.00 0.00 43.41 2.74
478 4044 1.746787 TCGGCAATAGCGAGACACTAA 59.253 47.619 0.00 0.00 43.41 2.24
479 4045 2.164827 TCGGCAATAGCGAGACACTAAA 59.835 45.455 0.00 0.00 43.41 1.85
480 4046 2.535984 CGGCAATAGCGAGACACTAAAG 59.464 50.000 0.00 0.00 43.41 1.85
481 4047 3.522553 GGCAATAGCGAGACACTAAAGT 58.477 45.455 0.00 0.00 43.41 2.66
482 4048 3.307242 GGCAATAGCGAGACACTAAAGTG 59.693 47.826 8.56 8.56 46.27 3.16
496 4062 6.877611 CACTAAAGTGTCAAATGTAGGGTT 57.122 37.500 1.81 0.00 40.96 4.11
497 4063 7.272037 CACTAAAGTGTCAAATGTAGGGTTT 57.728 36.000 1.81 0.00 40.96 3.27
498 4064 7.138736 CACTAAAGTGTCAAATGTAGGGTTTG 58.861 38.462 1.81 0.00 40.96 2.93
577 4143 9.331466 ACAGATGATAATTATGTGATACTCCCT 57.669 33.333 1.78 0.00 0.00 4.20
578 4144 9.814899 CAGATGATAATTATGTGATACTCCCTC 57.185 37.037 1.78 0.00 0.00 4.30
579 4145 8.986991 AGATGATAATTATGTGATACTCCCTCC 58.013 37.037 1.78 0.00 0.00 4.30
580 4146 7.170393 TGATAATTATGTGATACTCCCTCCG 57.830 40.000 1.78 0.00 0.00 4.63
581 4147 6.724441 TGATAATTATGTGATACTCCCTCCGT 59.276 38.462 1.78 0.00 0.00 4.69
582 4148 5.888982 AATTATGTGATACTCCCTCCGTT 57.111 39.130 0.00 0.00 0.00 4.44
583 4149 5.888982 ATTATGTGATACTCCCTCCGTTT 57.111 39.130 0.00 0.00 0.00 3.60
584 4150 3.821421 ATGTGATACTCCCTCCGTTTC 57.179 47.619 0.00 0.00 0.00 2.78
585 4151 1.829222 TGTGATACTCCCTCCGTTTCC 59.171 52.381 0.00 0.00 0.00 3.13
586 4152 1.829222 GTGATACTCCCTCCGTTTCCA 59.171 52.381 0.00 0.00 0.00 3.53
587 4153 2.235402 GTGATACTCCCTCCGTTTCCAA 59.765 50.000 0.00 0.00 0.00 3.53
588 4154 2.907696 TGATACTCCCTCCGTTTCCAAA 59.092 45.455 0.00 0.00 0.00 3.28
589 4155 3.521937 TGATACTCCCTCCGTTTCCAAAT 59.478 43.478 0.00 0.00 0.00 2.32
590 4156 4.717778 TGATACTCCCTCCGTTTCCAAATA 59.282 41.667 0.00 0.00 0.00 1.40
591 4157 5.368523 TGATACTCCCTCCGTTTCCAAATAT 59.631 40.000 0.00 0.00 0.00 1.28
592 4158 4.586306 ACTCCCTCCGTTTCCAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
593 4159 4.930696 ACTCCCTCCGTTTCCAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
594 4160 4.705023 ACTCCCTCCGTTTCCAAATATTTG 59.295 41.667 19.40 19.40 37.90 2.32
595 4161 4.668636 TCCCTCCGTTTCCAAATATTTGT 58.331 39.130 23.24 0.00 36.45 2.83
596 4162 4.703093 TCCCTCCGTTTCCAAATATTTGTC 59.297 41.667 23.24 11.68 36.45 3.18
597 4163 4.705023 CCCTCCGTTTCCAAATATTTGTCT 59.295 41.667 23.24 0.00 36.45 3.41
598 4164 5.185056 CCCTCCGTTTCCAAATATTTGTCTT 59.815 40.000 23.24 0.00 36.45 3.01
599 4165 6.295067 CCCTCCGTTTCCAAATATTTGTCTTT 60.295 38.462 23.24 0.00 36.45 2.52
600 4166 6.806739 CCTCCGTTTCCAAATATTTGTCTTTC 59.193 38.462 23.24 10.84 36.45 2.62
601 4167 7.309194 CCTCCGTTTCCAAATATTTGTCTTTCT 60.309 37.037 23.24 0.00 36.45 2.52
602 4168 8.624367 TCCGTTTCCAAATATTTGTCTTTCTA 57.376 30.769 23.24 5.03 36.45 2.10
603 4169 8.726988 TCCGTTTCCAAATATTTGTCTTTCTAG 58.273 33.333 23.24 8.49 36.45 2.43
604 4170 8.726988 CCGTTTCCAAATATTTGTCTTTCTAGA 58.273 33.333 23.24 10.41 36.45 2.43
628 4194 9.834628 AGACATTTTAAATGGTTACAACATACG 57.165 29.630 20.00 0.00 0.00 3.06
629 4195 8.973835 ACATTTTAAATGGTTACAACATACGG 57.026 30.769 20.00 0.00 0.00 4.02
630 4196 8.794553 ACATTTTAAATGGTTACAACATACGGA 58.205 29.630 20.00 0.00 0.00 4.69
631 4197 9.796120 CATTTTAAATGGTTACAACATACGGAT 57.204 29.630 9.63 0.00 0.00 4.18
632 4198 9.796120 ATTTTAAATGGTTACAACATACGGATG 57.204 29.630 5.94 5.94 39.16 3.51
634 4200 9.445878 TTTAAATGGTTACAACATACGGATGTA 57.554 29.630 15.10 0.00 45.93 2.29
635 4201 9.616156 TTAAATGGTTACAACATACGGATGTAT 57.384 29.630 15.10 8.21 45.93 2.29
676 4242 6.857964 AGTGTAAATTCACTCATTTTGCTTCG 59.142 34.615 0.00 0.00 44.07 3.79
677 4243 6.636850 GTGTAAATTCACTCATTTTGCTTCGT 59.363 34.615 0.00 0.00 35.68 3.85
678 4244 7.801315 GTGTAAATTCACTCATTTTGCTTCGTA 59.199 33.333 0.00 0.00 35.68 3.43
679 4245 8.511321 TGTAAATTCACTCATTTTGCTTCGTAT 58.489 29.630 0.00 0.00 0.00 3.06
680 4246 7.801547 AAATTCACTCATTTTGCTTCGTATG 57.198 32.000 0.00 0.00 0.00 2.39
681 4247 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
682 4248 5.281693 TCACTCATTTTGCTTCGTATGTG 57.718 39.130 0.00 0.00 0.00 3.21
683 4249 4.154015 TCACTCATTTTGCTTCGTATGTGG 59.846 41.667 0.00 0.00 0.00 4.17
684 4250 4.072131 ACTCATTTTGCTTCGTATGTGGT 58.928 39.130 0.00 0.00 0.00 4.16
685 4251 4.154195 ACTCATTTTGCTTCGTATGTGGTC 59.846 41.667 0.00 0.00 0.00 4.02
686 4252 4.068599 TCATTTTGCTTCGTATGTGGTCA 58.931 39.130 0.00 0.00 0.00 4.02
687 4253 3.889196 TTTTGCTTCGTATGTGGTCAC 57.111 42.857 0.00 0.00 0.00 3.67
688 4254 2.831685 TTGCTTCGTATGTGGTCACT 57.168 45.000 2.66 0.00 0.00 3.41
689 4255 2.831685 TGCTTCGTATGTGGTCACTT 57.168 45.000 2.66 0.00 0.00 3.16
690 4256 2.412870 TGCTTCGTATGTGGTCACTTG 58.587 47.619 2.66 0.00 0.00 3.16
691 4257 1.128692 GCTTCGTATGTGGTCACTTGC 59.871 52.381 2.66 0.00 0.00 4.01
692 4258 2.688507 CTTCGTATGTGGTCACTTGCT 58.311 47.619 2.66 0.00 0.00 3.91
693 4259 2.078849 TCGTATGTGGTCACTTGCTG 57.921 50.000 2.66 0.00 0.00 4.41
694 4260 1.616374 TCGTATGTGGTCACTTGCTGA 59.384 47.619 2.66 0.82 0.00 4.26
695 4261 2.036604 TCGTATGTGGTCACTTGCTGAA 59.963 45.455 2.66 0.00 0.00 3.02
696 4262 2.805671 CGTATGTGGTCACTTGCTGAAA 59.194 45.455 2.66 0.00 0.00 2.69
697 4263 3.436704 CGTATGTGGTCACTTGCTGAAAT 59.563 43.478 2.66 0.00 0.00 2.17
698 4264 4.436050 CGTATGTGGTCACTTGCTGAAATC 60.436 45.833 2.66 0.00 0.00 2.17
699 4265 3.213206 TGTGGTCACTTGCTGAAATCT 57.787 42.857 2.66 0.00 0.00 2.40
700 4266 3.554934 TGTGGTCACTTGCTGAAATCTT 58.445 40.909 2.66 0.00 0.00 2.40
701 4267 3.953612 TGTGGTCACTTGCTGAAATCTTT 59.046 39.130 2.66 0.00 0.00 2.52
702 4268 5.129634 TGTGGTCACTTGCTGAAATCTTTA 58.870 37.500 2.66 0.00 0.00 1.85
703 4269 5.239306 TGTGGTCACTTGCTGAAATCTTTAG 59.761 40.000 2.66 0.00 0.00 1.85
704 4270 5.470098 GTGGTCACTTGCTGAAATCTTTAGA 59.530 40.000 0.00 0.00 0.00 2.10
705 4271 6.017109 GTGGTCACTTGCTGAAATCTTTAGAA 60.017 38.462 0.00 0.00 0.00 2.10
706 4272 6.545666 TGGTCACTTGCTGAAATCTTTAGAAA 59.454 34.615 0.00 0.00 0.00 2.52
707 4273 7.080724 GGTCACTTGCTGAAATCTTTAGAAAG 58.919 38.462 0.00 0.00 37.36 2.62
709 4275 7.800847 GTCACTTGCTGAAATCTTTAGAAAGAC 59.199 37.037 6.85 0.00 46.80 3.01
710 4276 7.498900 TCACTTGCTGAAATCTTTAGAAAGACA 59.501 33.333 6.85 1.13 46.80 3.41
711 4277 8.131100 CACTTGCTGAAATCTTTAGAAAGACAA 58.869 33.333 6.85 5.40 46.80 3.18
712 4278 8.686334 ACTTGCTGAAATCTTTAGAAAGACAAA 58.314 29.630 6.85 0.00 46.80 2.83
713 4279 9.688592 CTTGCTGAAATCTTTAGAAAGACAAAT 57.311 29.630 6.85 0.00 46.80 2.32
726 4292 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
727 4293 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
728 4294 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
729 4295 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
730 4296 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
731 4297 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
849 4422 7.100458 ACTGTTAATGAGATAATTTGGGCAC 57.900 36.000 0.00 0.00 0.00 5.01
911 4503 2.184167 CAAACACGGCCCGAGTTGT 61.184 57.895 19.47 5.85 39.41 3.32
913 4505 0.601841 AAACACGGCCCGAGTTGTAG 60.602 55.000 19.47 0.00 39.41 2.74
914 4506 1.751349 AACACGGCCCGAGTTGTAGT 61.751 55.000 18.15 0.00 38.95 2.73
921 4513 0.246635 CCCGAGTTGTAGTGAGTGGG 59.753 60.000 0.00 0.00 0.00 4.61
954 4581 6.530181 CACTTGCTATTAAATTTTCCCCGTTC 59.470 38.462 0.00 0.00 0.00 3.95
988 4618 4.640855 CTCGTCCACCGTGCGTGT 62.641 66.667 0.00 0.00 41.26 4.49
1127 4757 0.640768 GAATTCGACGACAAGAGCCG 59.359 55.000 0.00 0.00 0.00 5.52
3268 7465 1.509703 GTGACGGGAAGGAAGAACAC 58.490 55.000 0.00 0.00 0.00 3.32
3273 7470 1.070134 CGGGAAGGAAGAACACTGACA 59.930 52.381 0.00 0.00 0.00 3.58
3416 7743 2.359478 ATTGGACGGCCGGAACAC 60.359 61.111 31.76 14.60 36.79 3.32
3444 7771 0.105593 ATGCTAGACCCGTGCATGAG 59.894 55.000 7.72 0.00 44.48 2.90
3681 8020 0.322975 GTGCAGGCCCGATCATAGAT 59.677 55.000 0.00 0.00 0.00 1.98
3682 8021 0.610174 TGCAGGCCCGATCATAGATC 59.390 55.000 0.00 0.00 0.00 2.75
3705 8044 9.974750 GATCTTACTTAATAGCAACAACTTCAC 57.025 33.333 0.00 0.00 0.00 3.18
3712 8051 1.824230 AGCAACAACTTCACTTGCCAA 59.176 42.857 0.00 0.00 41.05 4.52
3713 8052 1.926510 GCAACAACTTCACTTGCCAAC 59.073 47.619 0.00 0.00 35.29 3.77
3714 8053 2.539476 CAACAACTTCACTTGCCAACC 58.461 47.619 0.00 0.00 0.00 3.77
3715 8054 0.738389 ACAACTTCACTTGCCAACCG 59.262 50.000 0.00 0.00 0.00 4.44
3716 8055 0.738389 CAACTTCACTTGCCAACCGT 59.262 50.000 0.00 0.00 0.00 4.83
3717 8056 1.944024 CAACTTCACTTGCCAACCGTA 59.056 47.619 0.00 0.00 0.00 4.02
3718 8057 2.335316 ACTTCACTTGCCAACCGTAA 57.665 45.000 0.00 0.00 0.00 3.18
3719 8058 2.645802 ACTTCACTTGCCAACCGTAAA 58.354 42.857 0.00 0.00 0.00 2.01
3720 8059 2.616842 ACTTCACTTGCCAACCGTAAAG 59.383 45.455 0.00 0.00 0.00 1.85
3723 8062 2.103432 TCACTTGCCAACCGTAAAGAGA 59.897 45.455 0.00 0.00 0.00 3.10
3724 8063 2.480419 CACTTGCCAACCGTAAAGAGAG 59.520 50.000 0.00 0.00 0.00 3.20
3725 8064 2.076863 CTTGCCAACCGTAAAGAGAGG 58.923 52.381 0.00 0.00 0.00 3.69
3726 8065 0.323629 TGCCAACCGTAAAGAGAGGG 59.676 55.000 0.00 0.00 0.00 4.30
3728 8067 1.944430 GCCAACCGTAAAGAGAGGGTG 60.944 57.143 0.00 0.00 42.16 4.61
3729 8068 1.346722 CCAACCGTAAAGAGAGGGTGT 59.653 52.381 0.00 0.00 40.97 4.16
3730 8069 2.413837 CAACCGTAAAGAGAGGGTGTG 58.586 52.381 0.00 0.00 37.92 3.82
3731 8070 0.320697 ACCGTAAAGAGAGGGTGTGC 59.679 55.000 0.00 0.00 36.25 4.57
3732 8071 0.320374 CCGTAAAGAGAGGGTGTGCA 59.680 55.000 0.00 0.00 0.00 4.57
3733 8072 1.429463 CGTAAAGAGAGGGTGTGCAC 58.571 55.000 10.75 10.75 0.00 4.57
3734 8073 1.429463 GTAAAGAGAGGGTGTGCACG 58.571 55.000 13.13 0.00 0.00 5.34
3735 8074 0.320374 TAAAGAGAGGGTGTGCACGG 59.680 55.000 13.13 0.00 0.00 4.94
3737 8076 2.048127 GAGAGGGTGTGCACGGAC 60.048 66.667 13.13 5.49 0.00 4.79
3739 8078 2.665185 GAGGGTGTGCACGGACAC 60.665 66.667 13.13 12.84 44.72 3.67
3742 8081 4.595538 GGTGTGCACGGACACGGA 62.596 66.667 13.13 0.00 46.13 4.69
3743 8082 2.357034 GTGTGCACGGACACGGAT 60.357 61.111 13.13 0.00 46.48 4.18
3744 8083 1.959226 GTGTGCACGGACACGGATT 60.959 57.895 13.13 0.00 46.48 3.01
3745 8084 1.227704 TGTGCACGGACACGGATTT 60.228 52.632 13.13 0.00 46.48 2.17
3746 8085 0.816018 TGTGCACGGACACGGATTTT 60.816 50.000 13.13 0.00 46.48 1.82
3748 8087 1.532007 GTGCACGGACACGGATTTTTA 59.468 47.619 0.00 0.00 46.48 1.52
3749 8088 1.801771 TGCACGGACACGGATTTTTAG 59.198 47.619 0.00 0.00 46.48 1.85
3752 8091 2.414138 CACGGACACGGATTTTTAGGAC 59.586 50.000 0.00 0.00 46.48 3.85
3753 8092 2.037511 ACGGACACGGATTTTTAGGACA 59.962 45.455 0.00 0.00 46.48 4.02
3754 8093 3.267483 CGGACACGGATTTTTAGGACAT 58.733 45.455 0.00 0.00 36.18 3.06
3755 8094 3.063452 CGGACACGGATTTTTAGGACATG 59.937 47.826 0.00 0.00 36.18 3.21
3758 8097 3.756434 ACACGGATTTTTAGGACATGGTG 59.244 43.478 0.00 0.00 0.00 4.17
3759 8098 4.006989 CACGGATTTTTAGGACATGGTGA 58.993 43.478 0.00 0.00 0.00 4.02
3760 8099 4.007659 ACGGATTTTTAGGACATGGTGAC 58.992 43.478 0.00 0.00 0.00 3.67
3761 8100 3.063452 CGGATTTTTAGGACATGGTGACG 59.937 47.826 0.00 0.00 0.00 4.35
3763 8102 1.434555 TTTTAGGACATGGTGACGCG 58.565 50.000 3.53 3.53 0.00 6.01
3764 8103 1.017177 TTTAGGACATGGTGACGCGC 61.017 55.000 5.73 0.00 0.00 6.86
3769 8108 4.794439 CATGGTGACGCGCGAGGA 62.794 66.667 39.36 16.72 0.00 3.71
3770 8109 3.838271 ATGGTGACGCGCGAGGAT 61.838 61.111 39.36 15.03 0.00 3.24
3773 8112 2.506217 GTGACGCGCGAGGATGAA 60.506 61.111 39.36 10.20 0.00 2.57
3774 8113 2.092291 GTGACGCGCGAGGATGAAA 61.092 57.895 39.36 9.06 0.00 2.69
3775 8114 1.153647 TGACGCGCGAGGATGAAAT 60.154 52.632 39.36 10.81 0.00 2.17
3776 8115 1.145759 TGACGCGCGAGGATGAAATC 61.146 55.000 39.36 20.32 44.55 2.17
3777 8116 0.872021 GACGCGCGAGGATGAAATCT 60.872 55.000 39.36 9.23 44.71 2.40
3778 8117 1.148157 ACGCGCGAGGATGAAATCTG 61.148 55.000 39.36 1.45 44.71 2.90
3779 8118 1.825285 CGCGCGAGGATGAAATCTGG 61.825 60.000 28.94 0.00 44.71 3.86
3781 8120 1.212616 CGCGAGGATGAAATCTGGAC 58.787 55.000 0.00 0.00 44.71 4.02
3782 8121 1.212616 GCGAGGATGAAATCTGGACG 58.787 55.000 0.00 0.00 44.71 4.79
3784 8123 1.137086 CGAGGATGAAATCTGGACGGT 59.863 52.381 0.00 0.00 44.71 4.83
3785 8124 2.799917 CGAGGATGAAATCTGGACGGTC 60.800 54.545 0.00 0.00 44.71 4.79
3786 8125 2.432510 GAGGATGAAATCTGGACGGTCT 59.567 50.000 8.23 0.00 44.71 3.85
3787 8126 3.637229 GAGGATGAAATCTGGACGGTCTA 59.363 47.826 8.23 0.29 44.71 2.59
3789 8128 4.282195 AGGATGAAATCTGGACGGTCTATC 59.718 45.833 8.23 0.00 44.71 2.08
3790 8129 4.282195 GGATGAAATCTGGACGGTCTATCT 59.718 45.833 8.23 0.00 44.71 1.98
3791 8130 5.477291 GGATGAAATCTGGACGGTCTATCTA 59.523 44.000 8.23 0.00 44.71 1.98
3792 8131 6.153680 GGATGAAATCTGGACGGTCTATCTAT 59.846 42.308 8.23 0.00 44.71 1.98
3793 8132 6.332735 TGAAATCTGGACGGTCTATCTATG 57.667 41.667 8.23 0.00 0.00 2.23
3795 8134 3.510531 TCTGGACGGTCTATCTATGCT 57.489 47.619 8.23 0.00 0.00 3.79
3796 8135 4.635699 TCTGGACGGTCTATCTATGCTA 57.364 45.455 8.23 0.00 0.00 3.49
3797 8136 5.180810 TCTGGACGGTCTATCTATGCTAT 57.819 43.478 8.23 0.00 0.00 2.97
3798 8137 6.309389 TCTGGACGGTCTATCTATGCTATA 57.691 41.667 8.23 0.00 0.00 1.31
3799 8138 6.718294 TCTGGACGGTCTATCTATGCTATAA 58.282 40.000 8.23 0.00 0.00 0.98
3800 8139 6.824196 TCTGGACGGTCTATCTATGCTATAAG 59.176 42.308 8.23 0.00 0.00 1.73
3802 8141 7.347252 TGGACGGTCTATCTATGCTATAAGAT 58.653 38.462 8.23 0.00 36.45 2.40
3803 8142 7.834681 TGGACGGTCTATCTATGCTATAAGATT 59.165 37.037 8.23 0.00 34.36 2.40
3806 8145 8.842280 ACGGTCTATCTATGCTATAAGATTAGC 58.158 37.037 0.00 0.00 43.98 3.09
3807 8146 9.062524 CGGTCTATCTATGCTATAAGATTAGCT 57.937 37.037 5.21 0.00 44.03 3.32
3840 8179 7.722949 AGTGATTGAATGATACCCAAACAAT 57.277 32.000 0.00 0.00 37.33 2.71
3842 8181 9.253832 AGTGATTGAATGATACCCAAACAATAA 57.746 29.630 0.00 0.00 35.97 1.40
3843 8182 9.520204 GTGATTGAATGATACCCAAACAATAAG 57.480 33.333 0.00 0.00 35.97 1.73
3844 8183 8.196771 TGATTGAATGATACCCAAACAATAAGC 58.803 33.333 0.00 0.00 35.97 3.09
3845 8184 6.463995 TGAATGATACCCAAACAATAAGCC 57.536 37.500 0.00 0.00 0.00 4.35
3846 8185 5.954752 TGAATGATACCCAAACAATAAGCCA 59.045 36.000 0.00 0.00 0.00 4.75
3850 8189 2.970987 ACCCAAACAATAAGCCAGGTT 58.029 42.857 0.00 0.00 0.00 3.50
3851 8190 4.120946 ACCCAAACAATAAGCCAGGTTA 57.879 40.909 0.00 0.00 0.00 2.85
3852 8191 4.484912 ACCCAAACAATAAGCCAGGTTAA 58.515 39.130 0.00 0.00 0.00 2.01
3853 8192 5.090845 ACCCAAACAATAAGCCAGGTTAAT 58.909 37.500 0.00 0.00 0.00 1.40
3854 8193 5.546110 ACCCAAACAATAAGCCAGGTTAATT 59.454 36.000 0.00 0.00 0.00 1.40
3856 8195 6.295575 CCCAAACAATAAGCCAGGTTAATTCA 60.296 38.462 0.00 0.00 0.00 2.57
3857 8196 6.813152 CCAAACAATAAGCCAGGTTAATTCAG 59.187 38.462 0.00 0.00 0.00 3.02
3858 8197 7.378181 CAAACAATAAGCCAGGTTAATTCAGT 58.622 34.615 0.00 0.00 0.00 3.41
3860 8199 8.644374 AACAATAAGCCAGGTTAATTCAGTAA 57.356 30.769 0.00 0.00 0.00 2.24
3861 8200 8.644374 ACAATAAGCCAGGTTAATTCAGTAAA 57.356 30.769 0.00 0.00 0.00 2.01
3865 8204 6.920569 AGCCAGGTTAATTCAGTAAATACG 57.079 37.500 0.00 0.00 0.00 3.06
3866 8205 6.412214 AGCCAGGTTAATTCAGTAAATACGT 58.588 36.000 0.00 0.00 0.00 3.57
3867 8206 6.315393 AGCCAGGTTAATTCAGTAAATACGTG 59.685 38.462 0.00 0.00 0.00 4.49
3869 8208 7.278424 GCCAGGTTAATTCAGTAAATACGTGTA 59.722 37.037 0.00 0.00 0.00 2.90
3870 8209 8.598075 CCAGGTTAATTCAGTAAATACGTGTAC 58.402 37.037 0.00 0.00 0.00 2.90
3871 8210 8.316046 CAGGTTAATTCAGTAAATACGTGTACG 58.684 37.037 0.00 2.43 46.33 3.67
3881 8220 3.632700 CGTGTACGTGGGTTGGTG 58.367 61.111 0.00 0.00 34.11 4.17
3883 8222 1.227734 GTGTACGTGGGTTGGTGCT 60.228 57.895 0.00 0.00 0.00 4.40
3885 8224 0.319083 TGTACGTGGGTTGGTGCTAG 59.681 55.000 0.00 0.00 0.00 3.42
3888 8227 2.434331 GTGGGTTGGTGCTAGCCA 59.566 61.111 13.29 0.06 40.64 4.75
4145 9691 1.499913 ATGCCACTGGACCATCCACA 61.500 55.000 0.00 0.00 42.67 4.17
4153 9699 1.376466 GACCATCCACACACTGGCT 59.624 57.895 0.00 0.00 40.39 4.75
4319 10237 4.410400 CGCCGCCCCTCTTCCTTT 62.410 66.667 0.00 0.00 0.00 3.11
4323 10241 1.303643 CGCCCCTCTTCCTTTGCTT 60.304 57.895 0.00 0.00 0.00 3.91
4337 10255 1.965414 TTGCTTCTCATCCACCCCTA 58.035 50.000 0.00 0.00 0.00 3.53
4440 10810 1.153289 GCTGCACCTCGACATCCAT 60.153 57.895 0.00 0.00 0.00 3.41
4503 10879 4.021192 CCATCCTCTTTCCTATCTCTCTGC 60.021 50.000 0.00 0.00 0.00 4.26
4613 10990 7.512130 AGATGGTAGATGTATTGATGCTTGAA 58.488 34.615 0.00 0.00 0.00 2.69
4614 10991 8.162085 AGATGGTAGATGTATTGATGCTTGAAT 58.838 33.333 0.00 0.00 0.00 2.57
4617 10994 8.650490 TGGTAGATGTATTGATGCTTGAATCTA 58.350 33.333 0.00 0.00 0.00 1.98
4643 11020 9.895507 ATTAGATAGATGGATGCATAGGTAGAT 57.104 33.333 0.00 0.00 0.00 1.98
4644 11021 7.600231 AGATAGATGGATGCATAGGTAGATG 57.400 40.000 0.00 0.00 0.00 2.90
4645 11022 7.131451 AGATAGATGGATGCATAGGTAGATGT 58.869 38.462 0.00 0.00 0.00 3.06
4646 11023 5.674052 AGATGGATGCATAGGTAGATGTC 57.326 43.478 0.00 0.00 0.00 3.06
4647 11024 5.089434 AGATGGATGCATAGGTAGATGTCA 58.911 41.667 0.00 0.00 0.00 3.58
4648 11025 5.725338 AGATGGATGCATAGGTAGATGTCAT 59.275 40.000 0.00 0.00 0.00 3.06
4649 11026 5.830799 TGGATGCATAGGTAGATGTCATT 57.169 39.130 0.00 0.00 0.00 2.57
4650 11027 5.554070 TGGATGCATAGGTAGATGTCATTG 58.446 41.667 0.00 0.00 0.00 2.82
4651 11028 5.307716 TGGATGCATAGGTAGATGTCATTGA 59.692 40.000 0.00 0.00 0.00 2.57
4652 11029 6.183361 TGGATGCATAGGTAGATGTCATTGAA 60.183 38.462 0.00 0.00 0.00 2.69
4653 11030 6.712095 GGATGCATAGGTAGATGTCATTGAAA 59.288 38.462 0.00 0.00 0.00 2.69
4654 11031 7.094890 GGATGCATAGGTAGATGTCATTGAAAG 60.095 40.741 0.00 0.00 0.00 2.62
4655 11032 6.888105 TGCATAGGTAGATGTCATTGAAAGA 58.112 36.000 0.00 0.00 0.00 2.52
4656 11033 7.337938 TGCATAGGTAGATGTCATTGAAAGAA 58.662 34.615 0.00 0.00 0.00 2.52
4657 11034 7.280876 TGCATAGGTAGATGTCATTGAAAGAAC 59.719 37.037 0.00 0.00 0.00 3.01
4658 11035 7.280876 GCATAGGTAGATGTCATTGAAAGAACA 59.719 37.037 0.00 0.00 0.00 3.18
4659 11036 9.334947 CATAGGTAGATGTCATTGAAAGAACAT 57.665 33.333 0.00 0.00 0.00 2.71
4660 11037 9.911788 ATAGGTAGATGTCATTGAAAGAACATT 57.088 29.630 0.00 0.00 0.00 2.71
4661 11038 8.641498 AGGTAGATGTCATTGAAAGAACATTT 57.359 30.769 0.00 0.00 0.00 2.32
4662 11039 8.517878 AGGTAGATGTCATTGAAAGAACATTTG 58.482 33.333 0.00 0.00 0.00 2.32
4663 11040 7.756722 GGTAGATGTCATTGAAAGAACATTTGG 59.243 37.037 0.00 0.00 0.00 3.28
4664 11041 7.294017 AGATGTCATTGAAAGAACATTTGGT 57.706 32.000 0.00 0.00 0.00 3.67
4665 11042 7.149973 AGATGTCATTGAAAGAACATTTGGTG 58.850 34.615 0.00 0.00 0.00 4.17
4666 11043 6.219417 TGTCATTGAAAGAACATTTGGTGT 57.781 33.333 0.00 0.00 44.84 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.599518 TTGGATGCCTTCGCGTTGT 60.600 52.632 5.77 0.00 38.08 3.32
3 4 1.154225 GTTGGATGCCTTCGCGTTG 60.154 57.895 5.77 0.00 38.08 4.10
7 8 4.520846 CGCGTTGGATGCCTTCGC 62.521 66.667 0.00 12.78 40.42 4.70
8 9 3.864686 CCGCGTTGGATGCCTTCG 61.865 66.667 4.92 0.00 42.00 3.79
9 10 2.435938 TCCGCGTTGGATGCCTTC 60.436 61.111 4.92 0.00 43.74 3.46
76 3636 1.153901 TCGACGCGGATCTGGTTTC 60.154 57.895 12.47 0.00 0.00 2.78
98 3658 1.334160 TCCAGGTAGCTGACGTTCAA 58.666 50.000 23.31 0.00 0.00 2.69
129 3689 2.123589 TGTCTTGGACTCTTGGTTGGA 58.876 47.619 0.00 0.00 33.15 3.53
134 3694 1.202651 ACGGTTGTCTTGGACTCTTGG 60.203 52.381 0.00 0.00 33.15 3.61
135 3695 1.867233 CACGGTTGTCTTGGACTCTTG 59.133 52.381 0.00 0.00 33.15 3.02
136 3696 1.810412 GCACGGTTGTCTTGGACTCTT 60.810 52.381 0.00 0.00 33.15 2.85
137 3697 0.249911 GCACGGTTGTCTTGGACTCT 60.250 55.000 0.00 0.00 33.15 3.24
138 3698 0.249911 AGCACGGTTGTCTTGGACTC 60.250 55.000 0.00 0.00 33.15 3.36
139 3699 0.532862 CAGCACGGTTGTCTTGGACT 60.533 55.000 0.00 0.00 33.15 3.85
140 3700 1.941812 CAGCACGGTTGTCTTGGAC 59.058 57.895 0.00 0.00 0.00 4.02
141 3701 1.891919 GCAGCACGGTTGTCTTGGA 60.892 57.895 0.00 0.00 0.00 3.53
156 3716 2.282462 GTGGAGGTGTTGGGGCAG 60.282 66.667 0.00 0.00 0.00 4.85
157 3717 4.263572 CGTGGAGGTGTTGGGGCA 62.264 66.667 0.00 0.00 0.00 5.36
184 3744 3.792053 GATAGGCAGGTGCGGTCCG 62.792 68.421 6.99 6.99 43.26 4.79
189 3749 1.532604 TATCCGGATAGGCAGGTGCG 61.533 60.000 20.49 0.00 43.26 5.34
416 3980 8.770828 GGCAGTGTTCACGTTATAATATATGTT 58.229 33.333 0.00 0.00 0.00 2.71
434 4000 1.425066 TCATTTCAGGAGGGCAGTGTT 59.575 47.619 0.00 0.00 0.00 3.32
436 4002 2.431954 ATCATTTCAGGAGGGCAGTG 57.568 50.000 0.00 0.00 0.00 3.66
439 4005 3.496692 CCGATTATCATTTCAGGAGGGCA 60.497 47.826 0.00 0.00 0.00 5.36
440 4006 3.077359 CCGATTATCATTTCAGGAGGGC 58.923 50.000 0.00 0.00 0.00 5.19
441 4007 3.077359 GCCGATTATCATTTCAGGAGGG 58.923 50.000 0.00 0.00 0.00 4.30
442 4008 3.743521 TGCCGATTATCATTTCAGGAGG 58.256 45.455 0.00 0.00 0.00 4.30
443 4009 5.954296 ATTGCCGATTATCATTTCAGGAG 57.046 39.130 0.00 0.00 0.00 3.69
445 4011 5.634896 GCTATTGCCGATTATCATTTCAGG 58.365 41.667 0.00 0.00 0.00 3.86
446 4012 5.120674 TCGCTATTGCCGATTATCATTTCAG 59.879 40.000 0.00 0.00 35.36 3.02
448 4014 5.348724 TCTCGCTATTGCCGATTATCATTTC 59.651 40.000 0.00 0.00 35.36 2.17
449 4015 5.120830 GTCTCGCTATTGCCGATTATCATTT 59.879 40.000 0.00 0.00 35.36 2.32
450 4016 4.627467 GTCTCGCTATTGCCGATTATCATT 59.373 41.667 0.00 0.00 35.36 2.57
451 4017 4.177026 GTCTCGCTATTGCCGATTATCAT 58.823 43.478 0.00 0.00 35.36 2.45
452 4018 3.005367 TGTCTCGCTATTGCCGATTATCA 59.995 43.478 0.00 0.00 35.36 2.15
453 4019 3.365220 GTGTCTCGCTATTGCCGATTATC 59.635 47.826 0.00 0.00 35.36 1.75
454 4020 3.005897 AGTGTCTCGCTATTGCCGATTAT 59.994 43.478 0.00 0.00 35.36 1.28
455 4021 2.361119 AGTGTCTCGCTATTGCCGATTA 59.639 45.455 0.00 0.00 35.36 1.75
456 4022 1.137086 AGTGTCTCGCTATTGCCGATT 59.863 47.619 0.00 0.00 35.36 3.34
457 4023 0.747255 AGTGTCTCGCTATTGCCGAT 59.253 50.000 0.00 0.00 35.36 4.18
458 4024 1.385528 TAGTGTCTCGCTATTGCCGA 58.614 50.000 0.00 0.00 35.36 5.54
459 4025 2.203800 TTAGTGTCTCGCTATTGCCG 57.796 50.000 0.00 0.00 35.36 5.69
460 4026 3.307242 CACTTTAGTGTCTCGCTATTGCC 59.693 47.826 1.69 0.00 40.96 4.52
461 4027 4.506838 CACTTTAGTGTCTCGCTATTGC 57.493 45.455 1.69 0.00 40.96 3.56
473 4039 7.012894 TCAAACCCTACATTTGACACTTTAGTG 59.987 37.037 8.29 8.29 40.32 2.74
474 4040 7.057894 TCAAACCCTACATTTGACACTTTAGT 58.942 34.615 0.00 0.00 40.32 2.24
475 4041 7.504924 TCAAACCCTACATTTGACACTTTAG 57.495 36.000 0.00 0.00 40.32 1.85
476 4042 7.721842 TGATCAAACCCTACATTTGACACTTTA 59.278 33.333 0.00 0.00 46.05 1.85
477 4043 6.549364 TGATCAAACCCTACATTTGACACTTT 59.451 34.615 0.00 0.00 46.05 2.66
478 4044 6.016276 GTGATCAAACCCTACATTTGACACTT 60.016 38.462 0.00 0.97 46.05 3.16
479 4045 5.473504 GTGATCAAACCCTACATTTGACACT 59.526 40.000 0.00 1.23 46.05 3.55
480 4046 5.473504 AGTGATCAAACCCTACATTTGACAC 59.526 40.000 16.60 16.60 46.05 3.67
481 4047 5.630121 AGTGATCAAACCCTACATTTGACA 58.370 37.500 0.00 1.80 46.05 3.58
482 4048 6.879458 ACTAGTGATCAAACCCTACATTTGAC 59.121 38.462 0.00 0.00 46.05 3.18
483 4049 6.878923 CACTAGTGATCAAACCCTACATTTGA 59.121 38.462 18.45 2.89 46.96 2.69
484 4050 6.094048 CCACTAGTGATCAAACCCTACATTTG 59.906 42.308 24.68 0.00 38.21 2.32
485 4051 6.180472 CCACTAGTGATCAAACCCTACATTT 58.820 40.000 24.68 0.00 0.00 2.32
486 4052 5.339200 CCCACTAGTGATCAAACCCTACATT 60.339 44.000 24.68 0.00 0.00 2.71
487 4053 4.164221 CCCACTAGTGATCAAACCCTACAT 59.836 45.833 24.68 0.00 0.00 2.29
488 4054 3.517901 CCCACTAGTGATCAAACCCTACA 59.482 47.826 24.68 0.00 0.00 2.74
489 4055 3.773119 TCCCACTAGTGATCAAACCCTAC 59.227 47.826 24.68 0.00 0.00 3.18
490 4056 4.030913 CTCCCACTAGTGATCAAACCCTA 58.969 47.826 24.68 0.00 0.00 3.53
491 4057 2.840651 CTCCCACTAGTGATCAAACCCT 59.159 50.000 24.68 0.00 0.00 4.34
492 4058 2.092914 CCTCCCACTAGTGATCAAACCC 60.093 54.545 24.68 0.00 0.00 4.11
493 4059 2.092914 CCCTCCCACTAGTGATCAAACC 60.093 54.545 24.68 0.00 0.00 3.27
494 4060 2.092914 CCCCTCCCACTAGTGATCAAAC 60.093 54.545 24.68 0.00 0.00 2.93
495 4061 2.196595 CCCCTCCCACTAGTGATCAAA 58.803 52.381 24.68 3.76 0.00 2.69
496 4062 1.625228 CCCCCTCCCACTAGTGATCAA 60.625 57.143 24.68 5.48 0.00 2.57
497 4063 0.031111 CCCCCTCCCACTAGTGATCA 60.031 60.000 24.68 6.34 0.00 2.92
498 4064 0.031010 ACCCCCTCCCACTAGTGATC 60.031 60.000 24.68 0.00 0.00 2.92
570 4136 5.703730 AATATTTGGAAACGGAGGGAGTA 57.296 39.130 0.00 0.00 0.00 2.59
571 4137 4.586306 AATATTTGGAAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
572 4138 4.705023 ACAAATATTTGGAAACGGAGGGAG 59.295 41.667 27.43 2.64 42.34 4.30
573 4139 4.668636 ACAAATATTTGGAAACGGAGGGA 58.331 39.130 27.43 0.00 42.34 4.20
574 4140 4.705023 AGACAAATATTTGGAAACGGAGGG 59.295 41.667 27.43 3.22 42.34 4.30
575 4141 5.897377 AGACAAATATTTGGAAACGGAGG 57.103 39.130 27.43 3.68 42.34 4.30
576 4142 7.593825 AGAAAGACAAATATTTGGAAACGGAG 58.406 34.615 27.43 4.34 42.34 4.63
577 4143 7.519032 AGAAAGACAAATATTTGGAAACGGA 57.481 32.000 27.43 0.00 42.34 4.69
578 4144 8.726988 TCTAGAAAGACAAATATTTGGAAACGG 58.273 33.333 27.43 12.94 42.34 4.44
602 4168 9.834628 CGTATGTTGTAACCATTTAAAATGTCT 57.165 29.630 0.00 0.00 0.00 3.41
603 4169 9.068008 CCGTATGTTGTAACCATTTAAAATGTC 57.932 33.333 0.00 0.00 0.00 3.06
604 4170 8.794553 TCCGTATGTTGTAACCATTTAAAATGT 58.205 29.630 0.00 0.00 0.00 2.71
605 4171 9.796120 ATCCGTATGTTGTAACCATTTAAAATG 57.204 29.630 0.00 0.00 0.00 2.32
606 4172 9.796120 CATCCGTATGTTGTAACCATTTAAAAT 57.204 29.630 0.00 0.00 0.00 1.82
607 4173 8.794553 ACATCCGTATGTTGTAACCATTTAAAA 58.205 29.630 0.00 0.00 44.07 1.52
608 4174 8.338072 ACATCCGTATGTTGTAACCATTTAAA 57.662 30.769 0.00 0.00 44.07 1.52
609 4175 7.925043 ACATCCGTATGTTGTAACCATTTAA 57.075 32.000 0.00 0.00 44.07 1.52
610 4176 9.047371 CATACATCCGTATGTTGTAACCATTTA 57.953 33.333 0.00 0.00 46.70 1.40
611 4177 7.925993 CATACATCCGTATGTTGTAACCATTT 58.074 34.615 0.00 0.00 46.70 2.32
612 4178 7.490962 CATACATCCGTATGTTGTAACCATT 57.509 36.000 0.00 0.00 46.70 3.16
652 4218 6.636850 ACGAAGCAAAATGAGTGAATTTACAC 59.363 34.615 2.93 0.00 40.60 2.90
653 4219 6.734137 ACGAAGCAAAATGAGTGAATTTACA 58.266 32.000 2.93 0.00 0.00 2.41
654 4220 8.788813 CATACGAAGCAAAATGAGTGAATTTAC 58.211 33.333 0.00 0.00 0.00 2.01
655 4221 8.511321 ACATACGAAGCAAAATGAGTGAATTTA 58.489 29.630 0.00 0.00 0.00 1.40
656 4222 7.326789 CACATACGAAGCAAAATGAGTGAATTT 59.673 33.333 0.00 0.00 0.00 1.82
657 4223 6.803320 CACATACGAAGCAAAATGAGTGAATT 59.197 34.615 0.00 0.00 0.00 2.17
658 4224 6.317088 CACATACGAAGCAAAATGAGTGAAT 58.683 36.000 0.00 0.00 0.00 2.57
659 4225 5.334802 CCACATACGAAGCAAAATGAGTGAA 60.335 40.000 0.00 0.00 0.00 3.18
660 4226 4.154015 CCACATACGAAGCAAAATGAGTGA 59.846 41.667 0.00 0.00 0.00 3.41
661 4227 4.083324 ACCACATACGAAGCAAAATGAGTG 60.083 41.667 0.00 0.00 0.00 3.51
662 4228 4.072131 ACCACATACGAAGCAAAATGAGT 58.928 39.130 0.00 0.00 0.00 3.41
663 4229 4.154015 TGACCACATACGAAGCAAAATGAG 59.846 41.667 0.00 0.00 0.00 2.90
664 4230 4.068599 TGACCACATACGAAGCAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
665 4231 4.083324 AGTGACCACATACGAAGCAAAATG 60.083 41.667 2.78 0.00 0.00 2.32
666 4232 4.072131 AGTGACCACATACGAAGCAAAAT 58.928 39.130 2.78 0.00 0.00 1.82
667 4233 3.472652 AGTGACCACATACGAAGCAAAA 58.527 40.909 2.78 0.00 0.00 2.44
668 4234 3.120321 AGTGACCACATACGAAGCAAA 57.880 42.857 2.78 0.00 0.00 3.68
669 4235 2.805671 CAAGTGACCACATACGAAGCAA 59.194 45.455 2.78 0.00 0.00 3.91
670 4236 2.412870 CAAGTGACCACATACGAAGCA 58.587 47.619 2.78 0.00 0.00 3.91
671 4237 1.128692 GCAAGTGACCACATACGAAGC 59.871 52.381 2.78 0.00 0.00 3.86
672 4238 2.413112 CAGCAAGTGACCACATACGAAG 59.587 50.000 2.78 0.00 0.00 3.79
673 4239 2.036604 TCAGCAAGTGACCACATACGAA 59.963 45.455 2.78 0.00 0.00 3.85
674 4240 1.616374 TCAGCAAGTGACCACATACGA 59.384 47.619 2.78 0.00 0.00 3.43
675 4241 2.078849 TCAGCAAGTGACCACATACG 57.921 50.000 2.78 0.00 0.00 3.06
676 4242 4.697352 AGATTTCAGCAAGTGACCACATAC 59.303 41.667 2.78 0.00 33.71 2.39
677 4243 4.910195 AGATTTCAGCAAGTGACCACATA 58.090 39.130 2.78 0.00 33.71 2.29
678 4244 3.759581 AGATTTCAGCAAGTGACCACAT 58.240 40.909 2.78 0.00 33.71 3.21
679 4245 3.213206 AGATTTCAGCAAGTGACCACA 57.787 42.857 2.78 0.00 33.71 4.17
680 4246 4.574599 AAAGATTTCAGCAAGTGACCAC 57.425 40.909 0.00 0.00 33.71 4.16
681 4247 5.620206 TCTAAAGATTTCAGCAAGTGACCA 58.380 37.500 0.00 0.00 33.71 4.02
682 4248 6.560253 TTCTAAAGATTTCAGCAAGTGACC 57.440 37.500 0.00 0.00 33.71 4.02
683 4249 7.800847 GTCTTTCTAAAGATTTCAGCAAGTGAC 59.199 37.037 8.31 0.00 45.83 3.67
684 4250 7.498900 TGTCTTTCTAAAGATTTCAGCAAGTGA 59.501 33.333 8.31 0.00 45.83 3.41
685 4251 7.642669 TGTCTTTCTAAAGATTTCAGCAAGTG 58.357 34.615 8.31 0.00 45.83 3.16
686 4252 7.807977 TGTCTTTCTAAAGATTTCAGCAAGT 57.192 32.000 8.31 0.00 45.83 3.16
687 4253 9.688592 ATTTGTCTTTCTAAAGATTTCAGCAAG 57.311 29.630 8.31 0.00 45.83 4.01
700 4266 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
701 4267 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
702 4268 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
703 4269 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
704 4270 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
705 4271 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
706 4272 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
707 4273 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
708 4274 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
709 4275 8.202137 TCTACTTCCTCCGTTCCTAAATATTTG 58.798 37.037 11.05 1.40 0.00 2.32
710 4276 8.315220 TCTACTTCCTCCGTTCCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
711 4277 7.909485 TCTACTTCCTCCGTTCCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
712 4278 7.728981 TGATCTACTTCCTCCGTTCCTAAATAT 59.271 37.037 0.00 0.00 0.00 1.28
713 4279 7.064866 TGATCTACTTCCTCCGTTCCTAAATA 58.935 38.462 0.00 0.00 0.00 1.40
714 4280 5.897824 TGATCTACTTCCTCCGTTCCTAAAT 59.102 40.000 0.00 0.00 0.00 1.40
715 4281 5.266788 TGATCTACTTCCTCCGTTCCTAAA 58.733 41.667 0.00 0.00 0.00 1.85
716 4282 4.863548 TGATCTACTTCCTCCGTTCCTAA 58.136 43.478 0.00 0.00 0.00 2.69
717 4283 4.515028 TGATCTACTTCCTCCGTTCCTA 57.485 45.455 0.00 0.00 0.00 2.94
718 4284 3.383698 TGATCTACTTCCTCCGTTCCT 57.616 47.619 0.00 0.00 0.00 3.36
719 4285 4.674281 AATGATCTACTTCCTCCGTTCC 57.326 45.455 0.00 0.00 0.00 3.62
720 4286 6.198591 CGTTTAATGATCTACTTCCTCCGTTC 59.801 42.308 0.00 0.00 0.00 3.95
721 4287 6.040878 CGTTTAATGATCTACTTCCTCCGTT 58.959 40.000 0.00 0.00 0.00 4.44
722 4288 5.451520 CCGTTTAATGATCTACTTCCTCCGT 60.452 44.000 0.00 0.00 0.00 4.69
723 4289 4.982916 CCGTTTAATGATCTACTTCCTCCG 59.017 45.833 0.00 0.00 0.00 4.63
724 4290 5.298347 CCCGTTTAATGATCTACTTCCTCC 58.702 45.833 0.00 0.00 0.00 4.30
725 4291 5.163332 ACCCCGTTTAATGATCTACTTCCTC 60.163 44.000 0.00 0.00 0.00 3.71
726 4292 4.720273 ACCCCGTTTAATGATCTACTTCCT 59.280 41.667 0.00 0.00 0.00 3.36
727 4293 5.032327 ACCCCGTTTAATGATCTACTTCC 57.968 43.478 0.00 0.00 0.00 3.46
728 4294 8.496707 TTTTACCCCGTTTAATGATCTACTTC 57.503 34.615 0.00 0.00 0.00 3.01
729 4295 8.733458 GTTTTTACCCCGTTTAATGATCTACTT 58.267 33.333 0.00 0.00 0.00 2.24
730 4296 8.105197 AGTTTTTACCCCGTTTAATGATCTACT 58.895 33.333 0.00 0.00 0.00 2.57
731 4297 8.179615 CAGTTTTTACCCCGTTTAATGATCTAC 58.820 37.037 0.00 0.00 0.00 2.59
781 4347 1.660333 CGCGAAGTTTTGCTGGTTCTC 60.660 52.381 0.00 0.00 35.38 2.87
845 4418 4.813697 TCCTTTGCTTTAACAATTTGTGCC 59.186 37.500 2.13 0.00 0.00 5.01
853 4426 9.103861 CACCTTTAATTTCCTTTGCTTTAACAA 57.896 29.630 0.00 0.00 0.00 2.83
898 4471 1.874345 CTCACTACAACTCGGGCCGT 61.874 60.000 27.32 8.74 0.00 5.68
899 4472 1.153823 CTCACTACAACTCGGGCCG 60.154 63.158 22.51 22.51 0.00 6.13
911 4503 3.702048 GCCGCCACCCACTCACTA 61.702 66.667 0.00 0.00 0.00 2.74
929 4553 5.961272 ACGGGGAAAATTTAATAGCAAGTG 58.039 37.500 0.00 0.00 0.00 3.16
954 4581 2.808543 ACGAGCAAAGGTAGCTTTTGAG 59.191 45.455 17.04 11.14 43.58 3.02
985 4615 0.109412 GCCATTGAGCAGAGCAACAC 60.109 55.000 0.00 0.00 0.00 3.32
986 4616 1.579964 CGCCATTGAGCAGAGCAACA 61.580 55.000 0.00 0.00 0.00 3.33
987 4617 1.136147 CGCCATTGAGCAGAGCAAC 59.864 57.895 0.00 0.00 0.00 4.17
988 4618 2.042259 CCGCCATTGAGCAGAGCAA 61.042 57.895 0.00 0.00 0.00 3.91
1011 4641 2.282251 ACAGACAGGGCGAGACGA 60.282 61.111 0.00 0.00 0.00 4.20
1648 5278 2.037901 CAGCTGAGCTAAGATCTGGGA 58.962 52.381 8.42 0.00 36.40 4.37
3233 7430 2.338500 GTCACGATCTCAAGGACCAAC 58.662 52.381 0.00 0.00 0.00 3.77
3268 7465 2.224281 TGTTGGGAGTTGTAGCTGTCAG 60.224 50.000 0.00 0.00 0.00 3.51
3273 7470 3.327757 TGAGATTGTTGGGAGTTGTAGCT 59.672 43.478 0.00 0.00 0.00 3.32
3416 7743 1.883275 CGGGTCTAGCATCTCCAGTAG 59.117 57.143 0.00 0.00 0.00 2.57
3444 7771 1.627879 CGACTCTGAGAAGCTCTTGC 58.372 55.000 12.44 0.00 40.05 4.01
3681 8020 9.555727 AAGTGAAGTTGTTGCTATTAAGTAAGA 57.444 29.630 0.00 0.00 0.00 2.10
3682 8021 9.599322 CAAGTGAAGTTGTTGCTATTAAGTAAG 57.401 33.333 0.00 0.00 0.00 2.34
3700 8039 2.875933 TCTTTACGGTTGGCAAGTGAAG 59.124 45.455 14.26 14.26 34.22 3.02
3705 8044 2.076863 CCTCTCTTTACGGTTGGCAAG 58.923 52.381 0.00 0.00 0.00 4.01
3712 8051 0.320697 GCACACCCTCTCTTTACGGT 59.679 55.000 0.00 0.00 0.00 4.83
3713 8052 0.320374 TGCACACCCTCTCTTTACGG 59.680 55.000 0.00 0.00 0.00 4.02
3714 8053 1.429463 GTGCACACCCTCTCTTTACG 58.571 55.000 13.17 0.00 0.00 3.18
3715 8054 1.429463 CGTGCACACCCTCTCTTTAC 58.571 55.000 18.64 0.00 0.00 2.01
3716 8055 0.320374 CCGTGCACACCCTCTCTTTA 59.680 55.000 18.64 0.00 0.00 1.85
3717 8056 1.071471 CCGTGCACACCCTCTCTTT 59.929 57.895 18.64 0.00 0.00 2.52
3718 8057 1.837051 TCCGTGCACACCCTCTCTT 60.837 57.895 18.64 0.00 0.00 2.85
3719 8058 2.203640 TCCGTGCACACCCTCTCT 60.204 61.111 18.64 0.00 0.00 3.10
3720 8059 2.048127 GTCCGTGCACACCCTCTC 60.048 66.667 18.64 0.00 0.00 3.20
3723 8062 4.602259 CGTGTCCGTGCACACCCT 62.602 66.667 18.64 0.00 43.34 4.34
3725 8064 3.876589 ATCCGTGTCCGTGCACACC 62.877 63.158 18.64 3.98 43.34 4.16
3726 8065 1.503818 AAATCCGTGTCCGTGCACAC 61.504 55.000 18.64 9.09 42.90 3.82
3728 8067 0.309612 AAAAATCCGTGTCCGTGCAC 59.690 50.000 6.82 6.82 36.12 4.57
3729 8068 1.801771 CTAAAAATCCGTGTCCGTGCA 59.198 47.619 0.00 0.00 0.00 4.57
3730 8069 1.129811 CCTAAAAATCCGTGTCCGTGC 59.870 52.381 0.00 0.00 0.00 5.34
3731 8070 2.414138 GTCCTAAAAATCCGTGTCCGTG 59.586 50.000 0.00 0.00 0.00 4.94
3732 8071 2.037511 TGTCCTAAAAATCCGTGTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
3733 8072 2.690786 TGTCCTAAAAATCCGTGTCCG 58.309 47.619 0.00 0.00 0.00 4.79
3734 8073 3.377172 CCATGTCCTAAAAATCCGTGTCC 59.623 47.826 0.00 0.00 0.00 4.02
3735 8074 4.007659 ACCATGTCCTAAAAATCCGTGTC 58.992 43.478 0.00 0.00 0.00 3.67
3737 8076 4.006989 TCACCATGTCCTAAAAATCCGTG 58.993 43.478 0.00 0.00 0.00 4.94
3739 8078 3.063452 CGTCACCATGTCCTAAAAATCCG 59.937 47.826 0.00 0.00 0.00 4.18
3741 8080 3.485216 CGCGTCACCATGTCCTAAAAATC 60.485 47.826 0.00 0.00 0.00 2.17
3742 8081 2.418628 CGCGTCACCATGTCCTAAAAAT 59.581 45.455 0.00 0.00 0.00 1.82
3743 8082 1.801771 CGCGTCACCATGTCCTAAAAA 59.198 47.619 0.00 0.00 0.00 1.94
3744 8083 1.434555 CGCGTCACCATGTCCTAAAA 58.565 50.000 0.00 0.00 0.00 1.52
3745 8084 1.017177 GCGCGTCACCATGTCCTAAA 61.017 55.000 8.43 0.00 0.00 1.85
3746 8085 1.447140 GCGCGTCACCATGTCCTAA 60.447 57.895 8.43 0.00 0.00 2.69
3752 8091 4.794439 TCCTCGCGCGTCACCATG 62.794 66.667 30.98 7.06 0.00 3.66
3753 8092 3.838271 ATCCTCGCGCGTCACCAT 61.838 61.111 30.98 12.70 0.00 3.55
3754 8093 4.794439 CATCCTCGCGCGTCACCA 62.794 66.667 30.98 9.10 0.00 4.17
3755 8094 3.982372 TTCATCCTCGCGCGTCACC 62.982 63.158 30.98 0.00 0.00 4.02
3758 8097 0.872021 AGATTTCATCCTCGCGCGTC 60.872 55.000 30.98 16.29 0.00 5.19
3759 8098 1.141881 AGATTTCATCCTCGCGCGT 59.858 52.632 30.98 7.39 0.00 6.01
3760 8099 1.561730 CAGATTTCATCCTCGCGCG 59.438 57.895 26.76 26.76 0.00 6.86
3761 8100 0.530650 TCCAGATTTCATCCTCGCGC 60.531 55.000 0.00 0.00 0.00 6.86
3763 8102 1.212616 CGTCCAGATTTCATCCTCGC 58.787 55.000 0.00 0.00 0.00 5.03
3764 8103 1.137086 ACCGTCCAGATTTCATCCTCG 59.863 52.381 0.00 0.00 0.00 4.63
3768 8107 5.461032 AGATAGACCGTCCAGATTTCATC 57.539 43.478 0.00 0.00 0.00 2.92
3769 8108 6.573289 GCATAGATAGACCGTCCAGATTTCAT 60.573 42.308 0.00 0.00 0.00 2.57
3770 8109 5.279006 GCATAGATAGACCGTCCAGATTTCA 60.279 44.000 0.00 0.00 0.00 2.69
3773 8112 4.411927 AGCATAGATAGACCGTCCAGATT 58.588 43.478 0.00 0.00 0.00 2.40
3774 8113 4.040936 AGCATAGATAGACCGTCCAGAT 57.959 45.455 0.00 0.00 0.00 2.90
3775 8114 3.510531 AGCATAGATAGACCGTCCAGA 57.489 47.619 0.00 0.00 0.00 3.86
3776 8115 6.824196 TCTTATAGCATAGATAGACCGTCCAG 59.176 42.308 0.00 0.00 0.00 3.86
3777 8116 6.718294 TCTTATAGCATAGATAGACCGTCCA 58.282 40.000 0.00 0.00 0.00 4.02
3778 8117 7.811117 ATCTTATAGCATAGATAGACCGTCC 57.189 40.000 0.00 0.00 29.56 4.79
3813 8152 9.913310 TTGTTTGGGTATCATTCAATCACTATA 57.087 29.630 0.00 0.00 0.00 1.31
3815 8154 8.821686 ATTGTTTGGGTATCATTCAATCACTA 57.178 30.769 0.00 0.00 29.73 2.74
3817 8156 9.520204 CTTATTGTTTGGGTATCATTCAATCAC 57.480 33.333 0.00 0.00 34.01 3.06
3818 8157 8.196771 GCTTATTGTTTGGGTATCATTCAATCA 58.803 33.333 0.00 0.00 34.01 2.57
3820 8159 7.125507 TGGCTTATTGTTTGGGTATCATTCAAT 59.874 33.333 0.00 0.00 35.22 2.57
3821 8160 6.438741 TGGCTTATTGTTTGGGTATCATTCAA 59.561 34.615 0.00 0.00 0.00 2.69
3822 8161 5.954752 TGGCTTATTGTTTGGGTATCATTCA 59.045 36.000 0.00 0.00 0.00 2.57
3823 8162 6.461509 CCTGGCTTATTGTTTGGGTATCATTC 60.462 42.308 0.00 0.00 0.00 2.67
3824 8163 5.363580 CCTGGCTTATTGTTTGGGTATCATT 59.636 40.000 0.00 0.00 0.00 2.57
3825 8164 4.895297 CCTGGCTTATTGTTTGGGTATCAT 59.105 41.667 0.00 0.00 0.00 2.45
3826 8165 4.264172 ACCTGGCTTATTGTTTGGGTATCA 60.264 41.667 0.00 0.00 0.00 2.15
3827 8166 4.278310 ACCTGGCTTATTGTTTGGGTATC 58.722 43.478 0.00 0.00 0.00 2.24
3830 8169 2.694616 ACCTGGCTTATTGTTTGGGT 57.305 45.000 0.00 0.00 0.00 4.51
3831 8170 5.675684 ATTAACCTGGCTTATTGTTTGGG 57.324 39.130 0.00 0.00 0.00 4.12
3832 8171 6.696411 TGAATTAACCTGGCTTATTGTTTGG 58.304 36.000 0.00 0.00 0.00 3.28
3834 8173 7.539034 ACTGAATTAACCTGGCTTATTGTTT 57.461 32.000 0.00 0.00 0.00 2.83
3835 8174 8.644374 TTACTGAATTAACCTGGCTTATTGTT 57.356 30.769 0.00 0.00 0.00 2.83
3836 8175 8.644374 TTTACTGAATTAACCTGGCTTATTGT 57.356 30.769 0.00 0.00 0.00 2.71
3840 8179 8.042515 ACGTATTTACTGAATTAACCTGGCTTA 58.957 33.333 0.00 0.00 0.00 3.09
3842 8181 6.315393 CACGTATTTACTGAATTAACCTGGCT 59.685 38.462 0.00 0.00 0.00 4.75
3843 8182 6.093082 ACACGTATTTACTGAATTAACCTGGC 59.907 38.462 0.00 0.00 0.00 4.85
3844 8183 7.605410 ACACGTATTTACTGAATTAACCTGG 57.395 36.000 0.00 0.00 0.00 4.45
3845 8184 8.316046 CGTACACGTATTTACTGAATTAACCTG 58.684 37.037 0.00 0.00 34.11 4.00
3846 8185 8.398491 CGTACACGTATTTACTGAATTAACCT 57.602 34.615 0.00 0.00 34.11 3.50
3864 8203 2.600475 GCACCAACCCACGTACACG 61.600 63.158 0.00 0.00 46.33 4.49
3865 8204 0.033781 TAGCACCAACCCACGTACAC 59.966 55.000 0.00 0.00 0.00 2.90
3866 8205 0.319083 CTAGCACCAACCCACGTACA 59.681 55.000 0.00 0.00 0.00 2.90
3867 8206 1.017701 GCTAGCACCAACCCACGTAC 61.018 60.000 10.63 0.00 0.00 3.67
3869 8208 2.032071 GCTAGCACCAACCCACGT 59.968 61.111 10.63 0.00 0.00 4.49
3870 8209 2.746277 GGCTAGCACCAACCCACG 60.746 66.667 18.24 0.00 0.00 4.94
3871 8210 1.000896 ATGGCTAGCACCAACCCAC 60.001 57.895 18.24 0.00 44.65 4.61
3872 8211 1.207488 AGATGGCTAGCACCAACCCA 61.207 55.000 18.24 3.35 44.65 4.51
3873 8212 0.034089 AAGATGGCTAGCACCAACCC 60.034 55.000 18.24 0.00 44.65 4.11
3874 8213 2.710096 TAAGATGGCTAGCACCAACC 57.290 50.000 18.24 0.00 44.65 3.77
3875 8214 2.945668 CCTTAAGATGGCTAGCACCAAC 59.054 50.000 18.24 5.10 44.65 3.77
3876 8215 2.683742 GCCTTAAGATGGCTAGCACCAA 60.684 50.000 18.24 0.00 44.65 3.67
3888 8227 4.998051 TCAAAAGAACTGGGCCTTAAGAT 58.002 39.130 4.53 0.00 0.00 2.40
4145 9691 0.387929 TCGTTTTCTCGAGCCAGTGT 59.612 50.000 7.81 0.00 34.85 3.55
4153 9699 0.797249 GCGCTAGCTCGTTTTCTCGA 60.797 55.000 13.93 0.00 41.01 4.04
4319 10237 1.770658 CATAGGGGTGGATGAGAAGCA 59.229 52.381 0.00 0.00 0.00 3.91
4323 10241 0.768221 GGGCATAGGGGTGGATGAGA 60.768 60.000 0.00 0.00 0.00 3.27
4390 10719 1.529010 CAGTTGCACCTGAAGCCCA 60.529 57.895 5.09 0.00 34.23 5.36
4400 10729 3.660111 GTGGCCGTCCAGTTGCAC 61.660 66.667 0.00 0.00 44.48 4.57
4503 10879 7.219535 CCAATTTCGCATAAGACAAATGAAGAG 59.780 37.037 0.00 0.00 0.00 2.85
4617 10994 9.895507 ATCTACCTATGCATCCATCTATCTAAT 57.104 33.333 0.19 0.00 32.85 1.73
4624 11001 5.089434 TGACATCTACCTATGCATCCATCT 58.911 41.667 0.19 0.00 32.85 2.90
4633 11010 8.722480 TGTTCTTTCAATGACATCTACCTATG 57.278 34.615 0.00 0.00 0.00 2.23
4634 11011 9.911788 AATGTTCTTTCAATGACATCTACCTAT 57.088 29.630 0.00 0.00 0.00 2.57
4635 11012 9.739276 AAATGTTCTTTCAATGACATCTACCTA 57.261 29.630 0.00 0.00 0.00 3.08
4636 11013 8.517878 CAAATGTTCTTTCAATGACATCTACCT 58.482 33.333 0.00 0.00 0.00 3.08
4637 11014 7.756722 CCAAATGTTCTTTCAATGACATCTACC 59.243 37.037 0.00 0.00 0.00 3.18
4638 11015 8.299570 ACCAAATGTTCTTTCAATGACATCTAC 58.700 33.333 0.00 0.00 0.00 2.59
4639 11016 8.298854 CACCAAATGTTCTTTCAATGACATCTA 58.701 33.333 0.00 0.00 0.00 1.98
4640 11017 7.149973 CACCAAATGTTCTTTCAATGACATCT 58.850 34.615 0.00 0.00 0.00 2.90
4641 11018 6.925165 ACACCAAATGTTCTTTCAATGACATC 59.075 34.615 0.00 0.00 38.98 3.06
4642 11019 6.819284 ACACCAAATGTTCTTTCAATGACAT 58.181 32.000 0.00 0.00 38.98 3.06
4643 11020 6.219417 ACACCAAATGTTCTTTCAATGACA 57.781 33.333 0.00 0.00 38.98 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.