Multiple sequence alignment - TraesCS1B01G452500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G452500 chr1B 100.000 3072 0 0 1 3072 669225860 669222789 0.000000e+00 5674.0
1 TraesCS1B01G452500 chr1B 79.272 357 57 11 1182 1522 669307494 669307849 1.840000e-57 233.0
2 TraesCS1B01G452500 chr1B 89.231 130 14 0 2941 3070 161987747 161987618 2.450000e-36 163.0
3 TraesCS1B01G452500 chr1D 96.206 659 10 1 1483 2141 481016999 481016356 0.000000e+00 1064.0
4 TraesCS1B01G452500 chr1D 90.855 667 43 7 761 1415 481017769 481017109 0.000000e+00 878.0
5 TraesCS1B01G452500 chr1D 94.159 565 32 1 2508 3072 481014962 481014399 0.000000e+00 859.0
6 TraesCS1B01G452500 chr1D 91.623 382 10 2 2150 2509 481015910 481015529 2.730000e-140 508.0
7 TraesCS1B01G452500 chr1D 78.007 291 48 4 1191 1465 481284703 481284413 5.270000e-38 169.0
8 TraesCS1B01G452500 chr1D 86.861 137 17 1 195 330 481018315 481018179 5.310000e-33 152.0
9 TraesCS1B01G452500 chr1D 100.000 33 0 0 1412 1444 481017029 481016997 9.200000e-06 62.1
10 TraesCS1B01G452500 chr1A 86.877 983 79 21 832 1777 577570923 577569954 0.000000e+00 1055.0
11 TraesCS1B01G452500 chr1A 93.143 350 23 1 1791 2139 577569905 577569556 2.110000e-141 512.0
12 TraesCS1B01G452500 chr1A 78.028 355 69 8 2721 3070 107469678 107469328 6.670000e-52 215.0
13 TraesCS1B01G452500 chr1A 78.022 364 63 7 1151 1498 577592945 577592583 2.400000e-51 213.0
14 TraesCS1B01G452500 chr1A 76.009 446 76 16 2651 3066 261955733 261956177 5.190000e-48 202.0
15 TraesCS1B01G452500 chr1A 94.203 69 4 0 537 605 577571036 577570968 4.190000e-19 106.0
16 TraesCS1B01G452500 chr2D 89.697 165 9 4 605 764 192738876 192738715 1.440000e-48 204.0
17 TraesCS1B01G452500 chr4D 77.746 346 58 12 2725 3066 370304551 370304881 8.690000e-46 195.0
18 TraesCS1B01G452500 chr4D 87.578 161 12 4 605 764 299767216 299767063 2.430000e-41 180.0
19 TraesCS1B01G452500 chr4D 87.671 146 13 3 620 764 58157944 58157803 6.810000e-37 165.0
20 TraesCS1B01G452500 chr4D 88.889 126 14 0 2941 3066 69131767 69131892 4.100000e-34 156.0
21 TraesCS1B01G452500 chr4D 84.242 165 18 4 605 764 479687418 479687257 1.480000e-33 154.0
22 TraesCS1B01G452500 chr7A 86.667 165 14 4 605 764 494786832 494786993 3.150000e-40 176.0
23 TraesCS1B01G452500 chr4A 86.335 161 14 3 605 761 537589434 537589590 5.270000e-38 169.0
24 TraesCS1B01G452500 chr6D 76.136 352 64 16 2725 3066 393927543 393927884 1.890000e-37 167.0
25 TraesCS1B01G452500 chr5D 90.476 126 12 0 2941 3066 445729282 445729157 1.890000e-37 167.0
26 TraesCS1B01G452500 chr5D 83.871 155 23 2 2914 3066 470056469 470056315 2.470000e-31 147.0
27 TraesCS1B01G452500 chr5D 87.402 127 15 1 2941 3066 328407544 328407418 8.880000e-31 145.0
28 TraesCS1B01G452500 chr2B 84.848 165 16 6 605 764 109974318 109974478 1.140000e-34 158.0
29 TraesCS1B01G452500 chr3D 84.242 165 18 5 605 764 553037910 553037749 1.480000e-33 154.0
30 TraesCS1B01G452500 chr2A 83.146 178 20 7 594 764 728401993 728402167 1.480000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G452500 chr1B 669222789 669225860 3071 True 5674.000000 5674 100.000000 1 3072 1 chr1B.!!$R2 3071
1 TraesCS1B01G452500 chr1D 481014399 481018315 3916 True 587.183333 1064 93.284000 195 3072 6 chr1D.!!$R2 2877
2 TraesCS1B01G452500 chr1A 577569556 577571036 1480 True 557.666667 1055 91.407667 537 2139 3 chr1A.!!$R3 1602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.033991 TCTCCTCTTCTCACCTCCGG 60.034 60.0 0.0 0.0 0.00 5.14 F
354 356 0.179040 TCTTTTTCTTCCCGTGCCGT 60.179 50.0 0.0 0.0 0.00 5.68 F
372 374 0.179163 GTTGCCCTGCGTTATGCTTC 60.179 55.0 0.0 0.0 46.63 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1369 0.976641 AAGATCTGCGAGGGACACAA 59.023 50.000 0.0 0.0 0.0 3.33 R
1817 2214 1.066430 TCGTTTTGCCTCGCCTAGAAT 60.066 47.619 0.0 0.0 0.0 2.40 R
2290 3124 3.207265 CCCCAATGGTCGTTATCATCA 57.793 47.619 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.865001 GTGTAACAAAAAGTAGTTTCAAATGCA 58.135 29.630 0.00 0.00 36.32 3.96
40 41 9.593134 TGTAACAAAAAGTAGTTTCAAATGCAT 57.407 25.926 0.00 0.00 0.00 3.96
43 44 9.593134 AACAAAAAGTAGTTTCAAATGCATACA 57.407 25.926 0.00 0.00 0.00 2.29
44 45 9.248291 ACAAAAAGTAGTTTCAAATGCATACAG 57.752 29.630 0.00 0.00 0.00 2.74
45 46 9.462174 CAAAAAGTAGTTTCAAATGCATACAGA 57.538 29.630 0.00 0.00 0.00 3.41
60 61 9.903682 AATGCATACAGAAAATATAGAACATGC 57.096 29.630 0.00 0.00 36.48 4.06
61 62 8.449251 TGCATACAGAAAATATAGAACATGCA 57.551 30.769 0.00 0.00 41.78 3.96
62 63 9.070179 TGCATACAGAAAATATAGAACATGCAT 57.930 29.630 0.00 0.00 39.86 3.96
63 64 9.552114 GCATACAGAAAATATAGAACATGCATC 57.448 33.333 0.00 0.00 36.09 3.91
65 66 9.797642 ATACAGAAAATATAGAACATGCATCCA 57.202 29.630 0.00 0.00 0.00 3.41
66 67 8.162878 ACAGAAAATATAGAACATGCATCCAG 57.837 34.615 0.00 0.00 0.00 3.86
67 68 7.994911 ACAGAAAATATAGAACATGCATCCAGA 59.005 33.333 0.00 0.00 0.00 3.86
68 69 8.843262 CAGAAAATATAGAACATGCATCCAGAA 58.157 33.333 0.00 0.00 0.00 3.02
69 70 9.412460 AGAAAATATAGAACATGCATCCAGAAA 57.588 29.630 0.00 0.00 0.00 2.52
70 71 9.674824 GAAAATATAGAACATGCATCCAGAAAG 57.325 33.333 0.00 0.00 0.00 2.62
71 72 8.757982 AAATATAGAACATGCATCCAGAAAGT 57.242 30.769 0.00 0.00 0.00 2.66
72 73 9.851686 AAATATAGAACATGCATCCAGAAAGTA 57.148 29.630 0.00 0.00 0.00 2.24
73 74 8.839310 ATATAGAACATGCATCCAGAAAGTAC 57.161 34.615 0.00 0.00 0.00 2.73
74 75 4.910195 AGAACATGCATCCAGAAAGTACA 58.090 39.130 0.00 0.00 0.00 2.90
75 76 4.697352 AGAACATGCATCCAGAAAGTACAC 59.303 41.667 0.00 0.00 0.00 2.90
76 77 4.019792 ACATGCATCCAGAAAGTACACA 57.980 40.909 0.00 0.00 0.00 3.72
77 78 4.005650 ACATGCATCCAGAAAGTACACAG 58.994 43.478 0.00 0.00 0.00 3.66
78 79 4.256110 CATGCATCCAGAAAGTACACAGA 58.744 43.478 0.00 0.00 0.00 3.41
79 80 4.350368 TGCATCCAGAAAGTACACAGAA 57.650 40.909 0.00 0.00 0.00 3.02
80 81 4.065088 TGCATCCAGAAAGTACACAGAAC 58.935 43.478 0.00 0.00 0.00 3.01
81 82 4.065088 GCATCCAGAAAGTACACAGAACA 58.935 43.478 0.00 0.00 0.00 3.18
82 83 4.697352 GCATCCAGAAAGTACACAGAACAT 59.303 41.667 0.00 0.00 0.00 2.71
83 84 5.874810 GCATCCAGAAAGTACACAGAACATA 59.125 40.000 0.00 0.00 0.00 2.29
84 85 6.183360 GCATCCAGAAAGTACACAGAACATAC 60.183 42.308 0.00 0.00 0.00 2.39
85 86 6.413783 TCCAGAAAGTACACAGAACATACA 57.586 37.500 0.00 0.00 0.00 2.29
86 87 7.004555 TCCAGAAAGTACACAGAACATACAT 57.995 36.000 0.00 0.00 0.00 2.29
87 88 6.873605 TCCAGAAAGTACACAGAACATACATG 59.126 38.462 0.00 0.00 0.00 3.21
88 89 6.402550 CCAGAAAGTACACAGAACATACATGC 60.403 42.308 0.00 0.00 0.00 4.06
89 90 6.147656 CAGAAAGTACACAGAACATACATGCA 59.852 38.462 0.00 0.00 0.00 3.96
90 91 6.881065 AGAAAGTACACAGAACATACATGCAT 59.119 34.615 0.00 0.00 0.00 3.96
91 92 6.426980 AAGTACACAGAACATACATGCATG 57.573 37.500 25.09 25.09 0.00 4.06
92 93 3.770263 ACACAGAACATACATGCATGC 57.230 42.857 26.53 11.82 0.00 4.06
93 94 3.083293 ACACAGAACATACATGCATGCA 58.917 40.909 26.53 25.04 0.00 3.96
94 95 3.697542 ACACAGAACATACATGCATGCAT 59.302 39.130 27.46 27.46 37.08 3.96
103 104 3.844911 ATGCATGCATGGTTGGTTG 57.155 47.368 31.74 1.74 35.03 3.77
104 105 0.391927 ATGCATGCATGGTTGGTTGC 60.392 50.000 31.74 13.02 39.33 4.17
108 109 2.438730 TGCATGGTTGGTTGCATGT 58.561 47.368 0.00 0.00 43.54 3.21
109 110 0.757512 TGCATGGTTGGTTGCATGTT 59.242 45.000 0.00 0.00 43.54 2.71
110 111 1.149987 GCATGGTTGGTTGCATGTTG 58.850 50.000 0.00 0.00 38.72 3.33
111 112 1.798283 CATGGTTGGTTGCATGTTGG 58.202 50.000 0.00 0.00 0.00 3.77
112 113 0.035176 ATGGTTGGTTGCATGTTGGC 59.965 50.000 0.00 0.00 0.00 4.52
113 114 1.332889 TGGTTGGTTGCATGTTGGCA 61.333 50.000 0.00 0.00 43.19 4.92
114 115 0.600782 GGTTGGTTGCATGTTGGCAG 60.601 55.000 0.00 0.00 45.88 4.85
115 116 0.600782 GTTGGTTGCATGTTGGCAGG 60.601 55.000 0.00 0.00 45.88 4.85
121 122 3.682885 CATGTTGGCAGGCCGCAA 61.683 61.111 18.87 7.18 45.17 4.85
122 123 2.681064 ATGTTGGCAGGCCGCAAT 60.681 55.556 18.87 6.29 45.17 3.56
123 124 2.713967 ATGTTGGCAGGCCGCAATC 61.714 57.895 18.87 9.30 45.17 2.67
124 125 3.372730 GTTGGCAGGCCGCAATCA 61.373 61.111 18.87 7.25 45.17 2.57
125 126 2.599875 TTGGCAGGCCGCAATCAA 60.600 55.556 18.87 11.94 45.17 2.57
126 127 2.929903 TTGGCAGGCCGCAATCAAC 61.930 57.895 18.87 3.79 45.17 3.18
127 128 4.133796 GGCAGGCCGCAATCAACC 62.134 66.667 18.87 0.56 45.17 3.77
128 129 4.481112 GCAGGCCGCAATCAACCG 62.481 66.667 13.61 0.00 41.79 4.44
129 130 2.745884 CAGGCCGCAATCAACCGA 60.746 61.111 0.00 0.00 0.00 4.69
130 131 2.746277 AGGCCGCAATCAACCGAC 60.746 61.111 0.00 0.00 0.00 4.79
131 132 4.160635 GGCCGCAATCAACCGACG 62.161 66.667 0.00 0.00 0.00 5.12
132 133 3.115892 GCCGCAATCAACCGACGA 61.116 61.111 0.00 0.00 0.00 4.20
133 134 2.461110 GCCGCAATCAACCGACGAT 61.461 57.895 0.00 0.00 0.00 3.73
134 135 1.636340 CCGCAATCAACCGACGATC 59.364 57.895 0.00 0.00 0.00 3.69
135 136 0.806102 CCGCAATCAACCGACGATCT 60.806 55.000 0.00 0.00 0.00 2.75
136 137 0.298707 CGCAATCAACCGACGATCTG 59.701 55.000 0.00 0.00 0.00 2.90
137 138 0.652592 GCAATCAACCGACGATCTGG 59.347 55.000 0.00 0.00 0.00 3.86
138 139 2.007049 GCAATCAACCGACGATCTGGT 61.007 52.381 0.00 0.00 41.20 4.00
139 140 2.737359 GCAATCAACCGACGATCTGGTA 60.737 50.000 0.00 0.00 37.54 3.25
140 141 3.116300 CAATCAACCGACGATCTGGTAG 58.884 50.000 0.00 0.00 37.54 3.18
141 142 1.100510 TCAACCGACGATCTGGTAGG 58.899 55.000 0.00 0.79 37.54 3.18
142 143 1.100510 CAACCGACGATCTGGTAGGA 58.899 55.000 6.85 0.00 37.54 2.94
143 144 1.065701 CAACCGACGATCTGGTAGGAG 59.934 57.143 6.85 0.00 37.54 3.69
144 145 0.255318 ACCGACGATCTGGTAGGAGT 59.745 55.000 6.85 0.00 36.50 3.85
145 146 1.487976 ACCGACGATCTGGTAGGAGTA 59.512 52.381 6.85 0.00 36.50 2.59
146 147 2.092753 ACCGACGATCTGGTAGGAGTAA 60.093 50.000 6.85 0.00 36.50 2.24
147 148 2.290093 CCGACGATCTGGTAGGAGTAAC 59.710 54.545 0.00 0.00 34.96 2.50
148 149 2.290093 CGACGATCTGGTAGGAGTAACC 59.710 54.545 0.00 0.00 37.53 2.85
158 159 2.219027 GGAGTAACCTACTGGCCCC 58.781 63.158 0.00 0.00 39.59 5.80
159 160 1.683418 GGAGTAACCTACTGGCCCCG 61.683 65.000 0.00 0.00 39.59 5.73
160 161 0.974525 GAGTAACCTACTGGCCCCGT 60.975 60.000 0.00 0.00 39.59 5.28
161 162 1.219935 GTAACCTACTGGCCCCGTG 59.780 63.158 0.00 0.00 36.63 4.94
162 163 1.991167 TAACCTACTGGCCCCGTGG 60.991 63.158 0.00 0.00 36.63 4.94
182 183 3.579232 CGGCCCGGATAAAACGCC 61.579 66.667 0.73 3.85 36.21 5.68
183 184 2.124445 GGCCCGGATAAAACGCCT 60.124 61.111 0.73 0.00 36.65 5.52
184 185 2.478033 GGCCCGGATAAAACGCCTG 61.478 63.158 0.73 0.00 36.65 4.85
185 186 2.478033 GCCCGGATAAAACGCCTGG 61.478 63.158 0.73 0.00 0.00 4.45
186 187 1.222387 CCCGGATAAAACGCCTGGA 59.778 57.895 0.73 0.00 30.82 3.86
187 188 0.179029 CCCGGATAAAACGCCTGGAT 60.179 55.000 0.73 0.00 30.82 3.41
188 189 1.226746 CCGGATAAAACGCCTGGATC 58.773 55.000 0.00 0.00 0.00 3.36
189 190 0.859232 CGGATAAAACGCCTGGATCG 59.141 55.000 0.00 0.00 0.00 3.69
190 191 0.586802 GGATAAAACGCCTGGATCGC 59.413 55.000 0.00 0.00 0.00 4.58
191 192 1.295792 GATAAAACGCCTGGATCGCA 58.704 50.000 0.00 0.00 0.00 5.10
192 193 1.003866 GATAAAACGCCTGGATCGCAC 60.004 52.381 0.00 0.00 0.00 5.34
193 194 0.320858 TAAAACGCCTGGATCGCACA 60.321 50.000 0.00 0.00 0.00 4.57
194 195 1.577328 AAAACGCCTGGATCGCACAG 61.577 55.000 0.00 0.00 35.74 3.66
195 196 2.731691 AAACGCCTGGATCGCACAGT 62.732 55.000 0.00 0.00 34.16 3.55
196 197 1.884075 AACGCCTGGATCGCACAGTA 61.884 55.000 0.00 0.00 34.16 2.74
197 198 1.068083 CGCCTGGATCGCACAGTAT 59.932 57.895 0.00 0.00 34.16 2.12
198 199 0.313987 CGCCTGGATCGCACAGTATA 59.686 55.000 0.00 0.00 34.16 1.47
199 200 1.269569 CGCCTGGATCGCACAGTATAA 60.270 52.381 0.00 0.00 34.16 0.98
200 201 2.801699 CGCCTGGATCGCACAGTATAAA 60.802 50.000 0.00 0.00 34.16 1.40
201 202 2.544267 GCCTGGATCGCACAGTATAAAC 59.456 50.000 0.00 0.00 34.16 2.01
202 203 2.794910 CCTGGATCGCACAGTATAAACG 59.205 50.000 0.00 0.00 34.16 3.60
206 207 0.986270 TCGCACAGTATAAACGCACG 59.014 50.000 0.00 0.00 0.00 5.34
208 209 1.387420 CGCACAGTATAAACGCACGAA 59.613 47.619 0.00 0.00 0.00 3.85
211 212 1.987770 ACAGTATAAACGCACGAACGG 59.012 47.619 0.00 0.00 37.37 4.44
212 213 0.994263 AGTATAAACGCACGAACGGC 59.006 50.000 0.00 0.00 37.37 5.68
238 239 1.410932 CCGTGGATCTCCTCTCCTCTT 60.411 57.143 0.00 0.00 36.82 2.85
242 243 2.855599 TGGATCTCCTCTCCTCTTCTCA 59.144 50.000 0.00 0.00 36.82 3.27
243 244 3.222603 GGATCTCCTCTCCTCTTCTCAC 58.777 54.545 0.00 0.00 0.00 3.51
247 248 1.286553 TCCTCTCCTCTTCTCACCTCC 59.713 57.143 0.00 0.00 0.00 4.30
248 249 1.388547 CTCTCCTCTTCTCACCTCCG 58.611 60.000 0.00 0.00 0.00 4.63
249 250 0.033991 TCTCCTCTTCTCACCTCCGG 60.034 60.000 0.00 0.00 0.00 5.14
292 293 1.760268 CGCGCTTCCTTCTCTGCATC 61.760 60.000 5.56 0.00 0.00 3.91
312 313 2.027377 TCCGGCATACGTTCCCTAAAAA 60.027 45.455 0.00 0.00 42.24 1.94
313 314 2.353579 CCGGCATACGTTCCCTAAAAAG 59.646 50.000 0.00 0.00 42.24 2.27
331 333 1.066918 GCCATCCAGGGTACGTACG 59.933 63.158 18.98 15.01 38.09 3.67
332 334 1.066918 CCATCCAGGGTACGTACGC 59.933 63.158 29.49 29.49 39.19 4.42
333 335 1.669049 CCATCCAGGGTACGTACGCA 61.669 60.000 35.11 20.78 41.10 5.24
334 336 0.387929 CATCCAGGGTACGTACGCAT 59.612 55.000 35.11 21.87 41.10 4.73
335 337 1.117150 ATCCAGGGTACGTACGCATT 58.883 50.000 35.11 19.15 41.10 3.56
336 338 0.457035 TCCAGGGTACGTACGCATTC 59.543 55.000 35.11 15.96 41.10 2.67
337 339 0.458669 CCAGGGTACGTACGCATTCT 59.541 55.000 35.11 18.19 41.10 2.40
338 340 1.134907 CCAGGGTACGTACGCATTCTT 60.135 52.381 35.11 17.86 41.10 2.52
339 341 2.613691 CAGGGTACGTACGCATTCTTT 58.386 47.619 35.11 17.23 41.10 2.52
340 342 2.997986 CAGGGTACGTACGCATTCTTTT 59.002 45.455 35.11 16.60 41.10 2.27
341 343 3.434299 CAGGGTACGTACGCATTCTTTTT 59.566 43.478 35.11 15.96 41.10 1.94
342 344 3.681417 AGGGTACGTACGCATTCTTTTTC 59.319 43.478 35.11 12.30 41.10 2.29
343 345 3.681417 GGGTACGTACGCATTCTTTTTCT 59.319 43.478 31.03 0.00 38.80 2.52
344 346 4.152938 GGGTACGTACGCATTCTTTTTCTT 59.847 41.667 31.03 0.00 38.80 2.52
345 347 5.311271 GGTACGTACGCATTCTTTTTCTTC 58.689 41.667 16.72 0.00 0.00 2.87
346 348 4.400036 ACGTACGCATTCTTTTTCTTCC 57.600 40.909 16.72 0.00 0.00 3.46
347 349 3.187842 ACGTACGCATTCTTTTTCTTCCC 59.812 43.478 16.72 0.00 0.00 3.97
348 350 2.989422 ACGCATTCTTTTTCTTCCCG 57.011 45.000 0.00 0.00 0.00 5.14
349 351 2.227194 ACGCATTCTTTTTCTTCCCGT 58.773 42.857 0.00 0.00 0.00 5.28
350 352 2.031157 ACGCATTCTTTTTCTTCCCGTG 60.031 45.455 0.00 0.00 0.00 4.94
351 353 2.328473 GCATTCTTTTTCTTCCCGTGC 58.672 47.619 0.00 0.00 0.00 5.34
352 354 2.926586 GCATTCTTTTTCTTCCCGTGCC 60.927 50.000 0.00 0.00 0.00 5.01
353 355 0.948678 TTCTTTTTCTTCCCGTGCCG 59.051 50.000 0.00 0.00 0.00 5.69
354 356 0.179040 TCTTTTTCTTCCCGTGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
355 357 0.666374 CTTTTTCTTCCCGTGCCGTT 59.334 50.000 0.00 0.00 0.00 4.44
356 358 0.382515 TTTTTCTTCCCGTGCCGTTG 59.617 50.000 0.00 0.00 0.00 4.10
357 359 2.065906 TTTTCTTCCCGTGCCGTTGC 62.066 55.000 0.00 0.00 38.26 4.17
366 368 4.627801 TGCCGTTGCCCTGCGTTA 62.628 61.111 0.00 0.00 36.33 3.18
367 369 3.131478 GCCGTTGCCCTGCGTTAT 61.131 61.111 0.00 0.00 0.00 1.89
368 370 2.791256 CCGTTGCCCTGCGTTATG 59.209 61.111 0.00 0.00 0.00 1.90
369 371 2.100216 CGTTGCCCTGCGTTATGC 59.900 61.111 0.00 0.00 46.70 3.14
370 372 2.398554 CGTTGCCCTGCGTTATGCT 61.399 57.895 0.00 0.00 46.63 3.79
371 373 1.883021 GTTGCCCTGCGTTATGCTT 59.117 52.632 0.00 0.00 46.63 3.91
372 374 0.179163 GTTGCCCTGCGTTATGCTTC 60.179 55.000 0.00 0.00 46.63 3.86
373 375 1.643868 TTGCCCTGCGTTATGCTTCG 61.644 55.000 0.00 0.00 46.63 3.79
374 376 2.106683 GCCCTGCGTTATGCTTCGT 61.107 57.895 0.00 0.00 46.63 3.85
375 377 2.006772 CCCTGCGTTATGCTTCGTC 58.993 57.895 0.00 0.00 46.63 4.20
376 378 0.460284 CCCTGCGTTATGCTTCGTCT 60.460 55.000 0.00 0.00 46.63 4.18
377 379 1.359848 CCTGCGTTATGCTTCGTCTT 58.640 50.000 0.00 0.00 46.63 3.01
378 380 1.061131 CCTGCGTTATGCTTCGTCTTG 59.939 52.381 0.00 0.00 46.63 3.02
379 381 1.992667 CTGCGTTATGCTTCGTCTTGA 59.007 47.619 0.00 0.00 46.63 3.02
380 382 2.409012 TGCGTTATGCTTCGTCTTGAA 58.591 42.857 0.00 0.00 46.63 2.69
381 383 3.000041 TGCGTTATGCTTCGTCTTGAAT 59.000 40.909 0.00 0.00 46.63 2.57
382 384 4.177783 TGCGTTATGCTTCGTCTTGAATA 58.822 39.130 0.00 0.00 46.63 1.75
383 385 4.032445 TGCGTTATGCTTCGTCTTGAATAC 59.968 41.667 0.00 0.00 46.63 1.89
384 386 4.267928 GCGTTATGCTTCGTCTTGAATACT 59.732 41.667 0.00 0.00 41.73 2.12
385 387 5.554696 GCGTTATGCTTCGTCTTGAATACTC 60.555 44.000 0.00 0.00 41.73 2.59
386 388 5.515270 CGTTATGCTTCGTCTTGAATACTCA 59.485 40.000 0.00 0.00 35.63 3.41
393 395 6.092807 GCTTCGTCTTGAATACTCAATCCTTT 59.907 38.462 0.00 0.00 40.78 3.11
401 403 8.455903 TTGAATACTCAATCCTTTCCATGATC 57.544 34.615 0.00 0.00 36.62 2.92
419 421 5.375417 TGATCGTGATCAAACAAGCATTT 57.625 34.783 10.01 0.00 44.14 2.32
420 422 5.155643 TGATCGTGATCAAACAAGCATTTG 58.844 37.500 10.01 2.59 44.14 2.32
421 423 3.899734 TCGTGATCAAACAAGCATTTGG 58.100 40.909 0.00 0.00 39.57 3.28
422 424 2.988493 CGTGATCAAACAAGCATTTGGG 59.012 45.455 0.00 0.00 39.57 4.12
423 425 3.328505 GTGATCAAACAAGCATTTGGGG 58.671 45.455 0.00 0.00 39.57 4.96
424 426 2.302445 TGATCAAACAAGCATTTGGGGG 59.698 45.455 0.00 0.00 39.57 5.40
425 427 1.799933 TCAAACAAGCATTTGGGGGT 58.200 45.000 7.89 0.00 39.57 4.95
426 428 1.691434 TCAAACAAGCATTTGGGGGTC 59.309 47.619 7.89 0.00 39.57 4.46
427 429 0.678950 AAACAAGCATTTGGGGGTCG 59.321 50.000 0.00 0.00 38.66 4.79
428 430 1.184970 AACAAGCATTTGGGGGTCGG 61.185 55.000 0.00 0.00 38.66 4.79
429 431 2.679996 AAGCATTTGGGGGTCGGC 60.680 61.111 0.00 0.00 0.00 5.54
430 432 4.759205 AGCATTTGGGGGTCGGCC 62.759 66.667 0.00 0.00 0.00 6.13
432 434 2.283532 CATTTGGGGGTCGGCCAA 60.284 61.111 9.07 0.00 36.17 4.52
433 435 2.283604 ATTTGGGGGTCGGCCAAC 60.284 61.111 9.07 0.00 36.17 3.77
434 436 2.852281 ATTTGGGGGTCGGCCAACT 61.852 57.895 9.07 0.00 36.17 3.16
435 437 2.781431 ATTTGGGGGTCGGCCAACTC 62.781 60.000 9.07 0.00 36.17 3.01
436 438 4.974438 TGGGGGTCGGCCAACTCT 62.974 66.667 9.07 0.00 36.17 3.24
437 439 4.410400 GGGGGTCGGCCAACTCTG 62.410 72.222 9.07 0.00 36.17 3.35
438 440 3.637273 GGGGTCGGCCAACTCTGT 61.637 66.667 9.07 0.00 36.17 3.41
439 441 2.358737 GGGTCGGCCAACTCTGTG 60.359 66.667 9.07 0.00 36.17 3.66
440 442 2.741092 GGTCGGCCAACTCTGTGA 59.259 61.111 0.00 0.00 34.09 3.58
441 443 1.296715 GGTCGGCCAACTCTGTGAT 59.703 57.895 0.00 0.00 34.09 3.06
442 444 0.741221 GGTCGGCCAACTCTGTGATC 60.741 60.000 0.00 0.00 34.09 2.92
443 445 0.741221 GTCGGCCAACTCTGTGATCC 60.741 60.000 2.24 0.00 0.00 3.36
444 446 1.191489 TCGGCCAACTCTGTGATCCA 61.191 55.000 2.24 0.00 0.00 3.41
445 447 0.742281 CGGCCAACTCTGTGATCCAG 60.742 60.000 2.24 5.18 42.97 3.86
446 448 1.028868 GGCCAACTCTGTGATCCAGC 61.029 60.000 0.00 0.00 41.25 4.85
447 449 0.321919 GCCAACTCTGTGATCCAGCA 60.322 55.000 6.38 0.00 41.25 4.41
448 450 1.735386 CCAACTCTGTGATCCAGCAG 58.265 55.000 6.38 4.93 41.25 4.24
467 469 6.161381 CAGCAGCACTTCCAATTTCTAAATT 58.839 36.000 0.00 0.00 39.07 1.82
500 502 2.897350 CGGCGGGCTCCTTTCATC 60.897 66.667 0.00 0.00 0.00 2.92
501 503 2.897350 GGCGGGCTCCTTTCATCG 60.897 66.667 0.00 0.00 0.00 3.84
502 504 2.186903 GCGGGCTCCTTTCATCGA 59.813 61.111 0.00 0.00 0.00 3.59
503 505 1.449601 GCGGGCTCCTTTCATCGAA 60.450 57.895 0.00 0.00 0.00 3.71
504 506 1.024579 GCGGGCTCCTTTCATCGAAA 61.025 55.000 0.00 0.00 0.00 3.46
505 507 1.009829 CGGGCTCCTTTCATCGAAAG 58.990 55.000 9.09 9.09 45.86 2.62
523 525 5.188948 TCGAAAGGATCCTTACAATCTGGAA 59.811 40.000 27.29 4.66 34.84 3.53
527 529 6.139679 AGGATCCTTACAATCTGGAAACAA 57.860 37.500 9.02 0.00 42.06 2.83
534 536 6.089417 CCTTACAATCTGGAAACAAAATTCGC 59.911 38.462 0.00 0.00 42.06 4.70
602 832 6.034898 GTGGCATGCATGTGTACTTTAATTTC 59.965 38.462 26.79 5.67 0.00 2.17
603 833 6.098679 GGCATGCATGTGTACTTTAATTTCA 58.901 36.000 26.79 0.00 0.00 2.69
605 835 7.043192 GGCATGCATGTGTACTTTAATTTCATC 60.043 37.037 26.79 4.34 0.00 2.92
606 836 7.043192 GCATGCATGTGTACTTTAATTTCATCC 60.043 37.037 26.79 0.46 0.00 3.51
607 837 6.862209 TGCATGTGTACTTTAATTTCATCCC 58.138 36.000 0.00 0.00 0.00 3.85
608 838 6.663093 TGCATGTGTACTTTAATTTCATCCCT 59.337 34.615 0.00 0.00 0.00 4.20
609 839 7.148086 TGCATGTGTACTTTAATTTCATCCCTC 60.148 37.037 0.00 0.00 0.00 4.30
610 840 7.682021 GCATGTGTACTTTAATTTCATCCCTCC 60.682 40.741 0.00 0.00 0.00 4.30
611 841 5.878116 TGTGTACTTTAATTTCATCCCTCCG 59.122 40.000 0.00 0.00 0.00 4.63
612 842 5.878669 GTGTACTTTAATTTCATCCCTCCGT 59.121 40.000 0.00 0.00 0.00 4.69
613 843 6.373495 GTGTACTTTAATTTCATCCCTCCGTT 59.627 38.462 0.00 0.00 0.00 4.44
614 844 6.943718 TGTACTTTAATTTCATCCCTCCGTTT 59.056 34.615 0.00 0.00 0.00 3.60
615 845 6.510879 ACTTTAATTTCATCCCTCCGTTTC 57.489 37.500 0.00 0.00 0.00 2.78
616 846 6.246163 ACTTTAATTTCATCCCTCCGTTTCT 58.754 36.000 0.00 0.00 0.00 2.52
617 847 7.399634 ACTTTAATTTCATCCCTCCGTTTCTA 58.600 34.615 0.00 0.00 0.00 2.10
618 848 7.886446 ACTTTAATTTCATCCCTCCGTTTCTAA 59.114 33.333 0.00 0.00 0.00 2.10
619 849 8.638629 TTTAATTTCATCCCTCCGTTTCTAAA 57.361 30.769 0.00 0.00 0.00 1.85
620 850 8.638629 TTAATTTCATCCCTCCGTTTCTAAAA 57.361 30.769 0.00 0.00 0.00 1.52
621 851 6.759497 ATTTCATCCCTCCGTTTCTAAAAG 57.241 37.500 0.00 0.00 0.00 2.27
622 852 4.903045 TCATCCCTCCGTTTCTAAAAGT 57.097 40.909 0.00 0.00 0.00 2.66
623 853 4.828829 TCATCCCTCCGTTTCTAAAAGTC 58.171 43.478 0.00 0.00 0.00 3.01
624 854 4.530946 TCATCCCTCCGTTTCTAAAAGTCT 59.469 41.667 0.00 0.00 0.00 3.24
625 855 4.968971 TCCCTCCGTTTCTAAAAGTCTT 57.031 40.909 0.00 0.00 0.00 3.01
626 856 5.300411 TCCCTCCGTTTCTAAAAGTCTTT 57.700 39.130 0.00 0.00 0.00 2.52
627 857 5.687780 TCCCTCCGTTTCTAAAAGTCTTTT 58.312 37.500 14.76 14.76 36.67 2.27
628 858 6.124340 TCCCTCCGTTTCTAAAAGTCTTTTT 58.876 36.000 15.53 3.15 39.69 1.94
629 859 7.281841 TCCCTCCGTTTCTAAAAGTCTTTTTA 58.718 34.615 15.53 2.73 37.64 1.52
644 874 7.736447 AGTCTTTTTAGAGATTTCAGTGTGG 57.264 36.000 0.00 0.00 0.00 4.17
645 875 7.509546 AGTCTTTTTAGAGATTTCAGTGTGGA 58.490 34.615 0.00 0.00 0.00 4.02
646 876 8.160106 AGTCTTTTTAGAGATTTCAGTGTGGAT 58.840 33.333 0.00 0.00 0.00 3.41
647 877 8.787852 GTCTTTTTAGAGATTTCAGTGTGGATT 58.212 33.333 0.00 0.00 0.00 3.01
654 884 7.429633 AGAGATTTCAGTGTGGATTAGATACG 58.570 38.462 0.00 0.00 0.00 3.06
655 885 6.516718 AGATTTCAGTGTGGATTAGATACGG 58.483 40.000 0.00 0.00 0.00 4.02
656 886 5.925506 TTTCAGTGTGGATTAGATACGGA 57.074 39.130 0.00 0.00 0.00 4.69
657 887 6.479972 TTTCAGTGTGGATTAGATACGGAT 57.520 37.500 0.00 0.00 0.00 4.18
658 888 6.479972 TTCAGTGTGGATTAGATACGGATT 57.520 37.500 0.00 0.00 0.00 3.01
659 889 6.479972 TCAGTGTGGATTAGATACGGATTT 57.520 37.500 0.00 0.00 0.00 2.17
660 890 7.591421 TCAGTGTGGATTAGATACGGATTTA 57.409 36.000 0.00 0.00 0.00 1.40
661 891 8.190326 TCAGTGTGGATTAGATACGGATTTAT 57.810 34.615 0.00 0.00 0.00 1.40
662 892 9.304335 TCAGTGTGGATTAGATACGGATTTATA 57.696 33.333 0.00 0.00 0.00 0.98
668 898 9.797556 TGGATTAGATACGGATTTATATTGACG 57.202 33.333 0.00 0.00 0.00 4.35
669 899 9.245962 GGATTAGATACGGATTTATATTGACGG 57.754 37.037 0.00 0.00 0.00 4.79
674 904 9.720769 AGATACGGATTTATATTGACGGATTTT 57.279 29.630 0.00 0.00 0.00 1.82
678 908 9.204570 ACGGATTTATATTGACGGATTTTAGAG 57.795 33.333 0.00 0.00 0.00 2.43
679 909 9.204570 CGGATTTATATTGACGGATTTTAGAGT 57.795 33.333 0.00 0.00 0.00 3.24
686 916 7.778470 ATTGACGGATTTTAGAGTGAGATTC 57.222 36.000 0.00 0.00 0.00 2.52
687 917 6.280855 TGACGGATTTTAGAGTGAGATTCA 57.719 37.500 0.00 0.00 0.00 2.57
755 985 9.503399 AAATAAGCTTATATTTAGGAACGGAGG 57.497 33.333 19.14 0.00 34.53 4.30
756 986 5.485209 AGCTTATATTTAGGAACGGAGGG 57.515 43.478 0.00 0.00 0.00 4.30
757 987 5.152934 AGCTTATATTTAGGAACGGAGGGA 58.847 41.667 0.00 0.00 0.00 4.20
758 988 5.246429 AGCTTATATTTAGGAACGGAGGGAG 59.754 44.000 0.00 0.00 0.00 4.30
759 989 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
775 1005 4.405548 AGGGAGTATATTCTACCGACCAC 58.594 47.826 5.03 0.00 42.92 4.16
804 1035 8.980832 ACTCCTATAGATGGATTAGTGGAAAT 57.019 34.615 0.00 0.00 32.56 2.17
818 1049 3.818773 AGTGGAAATTTACAGAACCCACG 59.181 43.478 2.45 0.00 45.12 4.94
819 1050 3.057806 GTGGAAATTTACAGAACCCACGG 60.058 47.826 2.45 0.00 34.16 4.94
821 1052 4.202440 TGGAAATTTACAGAACCCACGGTA 60.202 41.667 0.00 0.00 33.12 4.02
858 1089 7.148289 GGTTAATTTGTTAGCTAGGTGAAGGAC 60.148 40.741 4.27 0.00 0.00 3.85
874 1105 2.321213 GACAACCTGCACTGTCCAC 58.679 57.895 7.35 0.00 36.72 4.02
877 1108 1.321474 CAACCTGCACTGTCCACATT 58.679 50.000 0.00 0.00 0.00 2.71
888 1119 4.746115 CACTGTCCACATTGAACAAAATGG 59.254 41.667 11.68 11.68 41.06 3.16
907 1138 7.552050 AAATGGTTTGTGATGATAAAAGGGA 57.448 32.000 0.00 0.00 0.00 4.20
1058 1289 1.078143 GAGCCTTCGTGCTTCCCAT 60.078 57.895 0.00 0.00 42.95 4.00
1079 1310 3.967332 AGGTTGGCATTTGATTTGGAG 57.033 42.857 0.00 0.00 0.00 3.86
1090 1321 6.591062 GCATTTGATTTGGAGCACTATTTTCA 59.409 34.615 0.00 0.00 0.00 2.69
1113 1344 4.754618 ACAACTGCTTGTTCGACATGATAA 59.245 37.500 0.00 0.00 37.31 1.75
1147 1395 1.264288 GCTCAACTTTTGTGTCCCTCG 59.736 52.381 0.00 0.00 0.00 4.63
1170 1418 2.158986 AGATCTTGTTCATGCTCCTCCG 60.159 50.000 0.00 0.00 0.00 4.63
1235 1483 4.136796 CCCAAGGTACATACACCATCATG 58.863 47.826 0.00 0.00 41.40 3.07
1249 1497 7.959658 ACACCATCATGATAAAAAGGAATGA 57.040 32.000 8.15 0.00 0.00 2.57
1337 1585 3.188254 TCAACCATGCACATAAGTTGTCG 59.812 43.478 18.06 2.52 36.00 4.35
1349 1597 3.895232 AAGTTGTCGGCTCTATCATGT 57.105 42.857 0.00 0.00 0.00 3.21
1463 1820 4.020617 CAGGTTCCAGGCGAGCCA 62.021 66.667 17.18 0.00 44.17 4.75
1629 1988 4.072088 CGGTCGTCAAGGTTGCGC 62.072 66.667 0.00 0.00 0.00 6.09
1684 2043 7.327214 TCATAAAAAGGAATGGCATGGTTTAC 58.673 34.615 0.00 0.00 0.00 2.01
1760 2119 9.184523 ACATTTACAGCTATGCACCTAATTTAA 57.815 29.630 0.00 0.00 0.00 1.52
1817 2214 7.142021 GTCAAATTCTACTCGATCTATGCAGA 58.858 38.462 0.00 0.00 34.56 4.26
2032 2429 2.451132 CGTGTCACGCTAATAGTGGAG 58.549 52.381 13.22 0.00 39.86 3.86
2268 3102 5.134661 TCTTGGGAAAAGTTTACAATCGGT 58.865 37.500 0.00 0.00 0.00 4.69
2290 3124 0.249398 ACCGATTTGGCGCTTCTACT 59.751 50.000 7.64 0.00 43.94 2.57
2377 3233 6.232581 AGACTTAGACAGAAGCTGCAATAT 57.767 37.500 1.02 0.00 34.37 1.28
2419 3275 4.827692 ACAACGTGATTTGCTACATAGGA 58.172 39.130 0.00 0.00 0.00 2.94
2436 3292 0.811616 GGATGGATCACGCAGTCACC 60.812 60.000 0.00 0.00 41.61 4.02
2569 3993 1.664588 GCGACGATGATAGCAGAGACC 60.665 57.143 0.00 0.00 0.00 3.85
2603 4027 3.018856 CAGTTGCCATCAGCCTAATCAA 58.981 45.455 0.00 0.00 42.71 2.57
2618 4042 2.185310 ATCAAGTGGCACGGGACTCC 62.185 60.000 12.71 0.00 0.00 3.85
2630 4054 2.680370 GGACTCCGATTTGGGCCCT 61.680 63.158 25.70 1.15 38.76 5.19
2682 4106 1.004440 GGCTGTCCAGTCAGTGTCC 60.004 63.158 0.00 0.00 37.70 4.02
2684 4108 1.290324 CTGTCCAGTCAGTGTCCGG 59.710 63.158 0.00 0.00 0.00 5.14
2708 4132 3.433540 AAAAACGCCACCCAACCGC 62.434 57.895 0.00 0.00 0.00 5.68
2714 4138 3.966543 CCACCCAACCGCCCTCTT 61.967 66.667 0.00 0.00 0.00 2.85
2721 4145 0.815615 CAACCGCCCTCTTCATAGCC 60.816 60.000 0.00 0.00 0.00 3.93
2725 4149 2.812619 GCCCTCTTCATAGCCGGCT 61.813 63.158 34.85 34.85 34.33 5.52
2759 4183 3.636300 GCTGACTGACACTCCTCATATCT 59.364 47.826 0.00 0.00 0.00 1.98
2761 4185 5.300539 GCTGACTGACACTCCTCATATCTAA 59.699 44.000 0.00 0.00 0.00 2.10
2790 4214 2.048127 GCCGGATATGAGGACGCC 60.048 66.667 5.05 0.00 0.00 5.68
2791 4215 2.867855 GCCGGATATGAGGACGCCA 61.868 63.158 5.05 0.00 0.00 5.69
2795 4219 1.273606 CGGATATGAGGACGCCAGAAT 59.726 52.381 0.00 0.00 0.00 2.40
2850 4274 1.475392 CGCCCGACCCCATACAAAATA 60.475 52.381 0.00 0.00 0.00 1.40
2870 4294 1.007721 AGACCCTATCTGCACTCCACT 59.992 52.381 0.00 0.00 35.81 4.00
2875 4299 2.166459 CCTATCTGCACTCCACTCGAAA 59.834 50.000 0.00 0.00 0.00 3.46
2974 4398 0.178987 AGCGGATCCGAGTCCTACAT 60.179 55.000 37.64 7.78 42.83 2.29
2983 4407 2.294791 CCGAGTCCTACATCTCCACATC 59.705 54.545 0.00 0.00 0.00 3.06
2989 4413 2.430694 CCTACATCTCCACATCCGTTGA 59.569 50.000 0.00 0.00 0.00 3.18
3010 4434 3.822192 CGACCTCATCCCACGCGA 61.822 66.667 15.93 0.00 0.00 5.87
3011 4435 2.202756 GACCTCATCCCACGCGAC 60.203 66.667 15.93 0.00 0.00 5.19
3028 4452 0.178947 GACCCCGAGGAGGAGATGAT 60.179 60.000 0.00 0.00 45.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.267084 ACTTTTTGTTACACACTGAACATTTTT 57.733 25.926 0.00 0.00 35.57 1.94
1 2 8.825667 ACTTTTTGTTACACACTGAACATTTT 57.174 26.923 0.00 0.00 35.57 1.82
3 4 8.736244 ACTACTTTTTGTTACACACTGAACATT 58.264 29.630 0.00 0.00 35.57 2.71
5 6 7.675962 ACTACTTTTTGTTACACACTGAACA 57.324 32.000 0.00 0.00 33.81 3.18
6 7 8.959734 AAACTACTTTTTGTTACACACTGAAC 57.040 30.769 0.00 0.00 0.00 3.18
8 9 8.325421 TGAAACTACTTTTTGTTACACACTGA 57.675 30.769 0.00 0.00 0.00 3.41
9 10 8.958175 TTGAAACTACTTTTTGTTACACACTG 57.042 30.769 0.00 0.00 0.00 3.66
12 13 8.865001 GCATTTGAAACTACTTTTTGTTACACA 58.135 29.630 0.00 0.00 0.00 3.72
13 14 8.865001 TGCATTTGAAACTACTTTTTGTTACAC 58.135 29.630 0.00 0.00 0.00 2.90
14 15 8.988064 TGCATTTGAAACTACTTTTTGTTACA 57.012 26.923 0.00 0.00 0.00 2.41
17 18 9.593134 TGTATGCATTTGAAACTACTTTTTGTT 57.407 25.926 3.54 0.00 0.00 2.83
18 19 9.248291 CTGTATGCATTTGAAACTACTTTTTGT 57.752 29.630 3.54 0.00 0.00 2.83
19 20 9.462174 TCTGTATGCATTTGAAACTACTTTTTG 57.538 29.630 3.54 0.00 0.00 2.44
34 35 9.903682 GCATGTTCTATATTTTCTGTATGCATT 57.096 29.630 3.54 0.00 37.65 3.56
35 36 9.070179 TGCATGTTCTATATTTTCTGTATGCAT 57.930 29.630 3.79 3.79 41.27 3.96
36 37 8.449251 TGCATGTTCTATATTTTCTGTATGCA 57.551 30.769 0.00 0.00 43.12 3.96
37 38 9.552114 GATGCATGTTCTATATTTTCTGTATGC 57.448 33.333 2.46 0.00 38.07 3.14
39 40 9.797642 TGGATGCATGTTCTATATTTTCTGTAT 57.202 29.630 2.46 0.00 0.00 2.29
40 41 9.276590 CTGGATGCATGTTCTATATTTTCTGTA 57.723 33.333 2.46 0.00 0.00 2.74
41 42 7.994911 TCTGGATGCATGTTCTATATTTTCTGT 59.005 33.333 2.46 0.00 0.00 3.41
42 43 8.387190 TCTGGATGCATGTTCTATATTTTCTG 57.613 34.615 2.46 0.00 0.00 3.02
43 44 8.985315 TTCTGGATGCATGTTCTATATTTTCT 57.015 30.769 2.46 0.00 0.00 2.52
44 45 9.674824 CTTTCTGGATGCATGTTCTATATTTTC 57.325 33.333 2.46 0.00 0.00 2.29
45 46 9.193806 ACTTTCTGGATGCATGTTCTATATTTT 57.806 29.630 2.46 0.00 0.00 1.82
46 47 8.757982 ACTTTCTGGATGCATGTTCTATATTT 57.242 30.769 2.46 0.00 0.00 1.40
47 48 9.277783 GTACTTTCTGGATGCATGTTCTATATT 57.722 33.333 2.46 0.00 0.00 1.28
48 49 8.432013 TGTACTTTCTGGATGCATGTTCTATAT 58.568 33.333 2.46 0.00 0.00 0.86
49 50 7.710907 GTGTACTTTCTGGATGCATGTTCTATA 59.289 37.037 2.46 0.00 0.00 1.31
50 51 6.540189 GTGTACTTTCTGGATGCATGTTCTAT 59.460 38.462 2.46 0.00 0.00 1.98
51 52 5.874810 GTGTACTTTCTGGATGCATGTTCTA 59.125 40.000 2.46 0.00 0.00 2.10
52 53 4.697352 GTGTACTTTCTGGATGCATGTTCT 59.303 41.667 2.46 0.00 0.00 3.01
53 54 4.455533 TGTGTACTTTCTGGATGCATGTTC 59.544 41.667 2.46 0.00 0.00 3.18
54 55 4.397420 TGTGTACTTTCTGGATGCATGTT 58.603 39.130 2.46 0.00 0.00 2.71
55 56 4.005650 CTGTGTACTTTCTGGATGCATGT 58.994 43.478 2.46 0.00 0.00 3.21
56 57 4.256110 TCTGTGTACTTTCTGGATGCATG 58.744 43.478 2.46 0.00 0.00 4.06
57 58 4.558226 TCTGTGTACTTTCTGGATGCAT 57.442 40.909 0.00 0.00 0.00 3.96
58 59 4.065088 GTTCTGTGTACTTTCTGGATGCA 58.935 43.478 0.00 0.00 0.00 3.96
59 60 4.065088 TGTTCTGTGTACTTTCTGGATGC 58.935 43.478 0.00 0.00 0.00 3.91
60 61 6.873605 TGTATGTTCTGTGTACTTTCTGGATG 59.126 38.462 0.00 0.00 0.00 3.51
61 62 7.004555 TGTATGTTCTGTGTACTTTCTGGAT 57.995 36.000 0.00 0.00 0.00 3.41
62 63 6.413783 TGTATGTTCTGTGTACTTTCTGGA 57.586 37.500 0.00 0.00 0.00 3.86
63 64 6.402550 GCATGTATGTTCTGTGTACTTTCTGG 60.403 42.308 0.00 0.00 0.00 3.86
64 65 6.147656 TGCATGTATGTTCTGTGTACTTTCTG 59.852 38.462 0.00 0.00 0.00 3.02
65 66 6.230472 TGCATGTATGTTCTGTGTACTTTCT 58.770 36.000 0.00 0.00 0.00 2.52
66 67 6.480524 TGCATGTATGTTCTGTGTACTTTC 57.519 37.500 0.00 0.00 0.00 2.62
67 68 6.623549 GCATGCATGTATGTTCTGTGTACTTT 60.624 38.462 26.79 0.00 0.00 2.66
68 69 5.163723 GCATGCATGTATGTTCTGTGTACTT 60.164 40.000 26.79 0.00 0.00 2.24
69 70 4.333649 GCATGCATGTATGTTCTGTGTACT 59.666 41.667 26.79 0.00 0.00 2.73
70 71 4.094739 TGCATGCATGTATGTTCTGTGTAC 59.905 41.667 26.79 6.41 0.00 2.90
71 72 4.260170 TGCATGCATGTATGTTCTGTGTA 58.740 39.130 26.79 0.00 0.00 2.90
72 73 3.083293 TGCATGCATGTATGTTCTGTGT 58.917 40.909 26.79 0.00 0.00 3.72
73 74 3.768468 TGCATGCATGTATGTTCTGTG 57.232 42.857 26.79 0.00 0.00 3.66
74 75 4.301637 CATGCATGCATGTATGTTCTGT 57.698 40.909 40.30 13.68 46.20 3.41
85 86 0.391927 GCAACCAACCATGCATGCAT 60.392 50.000 27.46 27.46 42.12 3.96
86 87 1.004799 GCAACCAACCATGCATGCA 60.005 52.632 25.04 25.04 42.12 3.96
87 88 1.004799 TGCAACCAACCATGCATGC 60.005 52.632 21.69 11.82 46.87 4.06
91 92 1.149987 CAACATGCAACCAACCATGC 58.850 50.000 0.00 0.00 41.88 4.06
92 93 1.798283 CCAACATGCAACCAACCATG 58.202 50.000 0.00 0.00 43.34 3.66
93 94 0.035176 GCCAACATGCAACCAACCAT 59.965 50.000 0.00 0.00 0.00 3.55
94 95 1.332889 TGCCAACATGCAACCAACCA 61.333 50.000 0.00 0.00 38.56 3.67
95 96 0.600782 CTGCCAACATGCAACCAACC 60.601 55.000 0.00 0.00 41.51 3.77
96 97 0.600782 CCTGCCAACATGCAACCAAC 60.601 55.000 0.00 0.00 41.51 3.77
97 98 1.747145 CCTGCCAACATGCAACCAA 59.253 52.632 0.00 0.00 41.51 3.67
98 99 2.870119 GCCTGCCAACATGCAACCA 61.870 57.895 0.00 0.00 41.51 3.67
99 100 2.047939 GCCTGCCAACATGCAACC 60.048 61.111 0.00 0.00 41.51 3.77
100 101 2.047939 GGCCTGCCAACATGCAAC 60.048 61.111 2.58 0.00 41.51 4.17
101 102 3.682885 CGGCCTGCCAACATGCAA 61.683 61.111 9.17 0.00 41.51 4.08
104 105 2.894240 GATTGCGGCCTGCCAACATG 62.894 60.000 15.40 0.00 45.60 3.21
105 106 2.681064 ATTGCGGCCTGCCAACAT 60.681 55.556 15.40 2.18 45.60 2.71
106 107 3.372730 GATTGCGGCCTGCCAACA 61.373 61.111 15.40 2.80 45.60 3.33
107 108 2.929903 TTGATTGCGGCCTGCCAAC 61.930 57.895 15.40 5.73 45.60 3.77
108 109 2.599875 TTGATTGCGGCCTGCCAA 60.600 55.556 15.40 9.46 45.60 4.52
109 110 3.372730 GTTGATTGCGGCCTGCCA 61.373 61.111 15.40 6.48 45.60 4.92
110 111 4.133796 GGTTGATTGCGGCCTGCC 62.134 66.667 15.40 0.00 45.60 4.85
111 112 4.481112 CGGTTGATTGCGGCCTGC 62.481 66.667 11.92 11.92 46.70 4.85
112 113 2.745884 TCGGTTGATTGCGGCCTG 60.746 61.111 0.00 0.00 0.00 4.85
113 114 2.746277 GTCGGTTGATTGCGGCCT 60.746 61.111 0.00 0.00 0.00 5.19
114 115 4.160635 CGTCGGTTGATTGCGGCC 62.161 66.667 0.00 0.00 0.00 6.13
115 116 2.361427 GATCGTCGGTTGATTGCGGC 62.361 60.000 0.00 0.00 0.00 6.53
116 117 0.806102 AGATCGTCGGTTGATTGCGG 60.806 55.000 0.00 0.00 0.00 5.69
117 118 0.298707 CAGATCGTCGGTTGATTGCG 59.701 55.000 0.00 0.00 0.00 4.85
118 119 0.652592 CCAGATCGTCGGTTGATTGC 59.347 55.000 0.00 0.00 0.00 3.56
119 120 2.010145 ACCAGATCGTCGGTTGATTG 57.990 50.000 0.00 0.00 28.43 2.67
120 121 2.100916 CCTACCAGATCGTCGGTTGATT 59.899 50.000 9.40 0.00 36.69 2.57
121 122 1.681793 CCTACCAGATCGTCGGTTGAT 59.318 52.381 9.40 0.00 36.69 2.57
122 123 1.100510 CCTACCAGATCGTCGGTTGA 58.899 55.000 9.40 0.00 36.69 3.18
123 124 1.065701 CTCCTACCAGATCGTCGGTTG 59.934 57.143 9.40 7.82 36.69 3.77
124 125 1.340795 ACTCCTACCAGATCGTCGGTT 60.341 52.381 9.40 0.00 36.69 4.44
125 126 0.255318 ACTCCTACCAGATCGTCGGT 59.745 55.000 9.13 9.13 39.41 4.69
126 127 2.251409 TACTCCTACCAGATCGTCGG 57.749 55.000 0.00 0.00 0.00 4.79
127 128 2.290093 GGTTACTCCTACCAGATCGTCG 59.710 54.545 0.00 0.00 35.67 5.12
128 129 3.553904 AGGTTACTCCTACCAGATCGTC 58.446 50.000 0.00 0.00 46.10 4.20
129 130 3.666345 AGGTTACTCCTACCAGATCGT 57.334 47.619 0.00 0.00 46.10 3.73
138 139 1.062658 GGGGCCAGTAGGTTACTCCTA 60.063 57.143 4.39 0.00 46.10 2.94
140 141 1.683418 CGGGGCCAGTAGGTTACTCC 61.683 65.000 4.39 0.00 36.76 3.85
141 142 0.974525 ACGGGGCCAGTAGGTTACTC 60.975 60.000 7.81 0.00 36.76 2.59
142 143 1.079804 ACGGGGCCAGTAGGTTACT 59.920 57.895 7.81 0.00 40.28 2.24
143 144 1.219935 CACGGGGCCAGTAGGTTAC 59.780 63.158 9.55 0.00 37.19 2.50
144 145 1.991167 CCACGGGGCCAGTAGGTTA 60.991 63.158 9.55 0.00 37.19 2.85
145 146 3.327404 CCACGGGGCCAGTAGGTT 61.327 66.667 9.55 0.00 37.19 3.50
165 166 3.579232 GGCGTTTTATCCGGGCCG 61.579 66.667 21.46 21.46 33.58 6.13
166 167 2.124445 AGGCGTTTTATCCGGGCC 60.124 61.111 0.00 4.22 44.07 5.80
167 168 2.478033 CCAGGCGTTTTATCCGGGC 61.478 63.158 0.00 0.00 31.25 6.13
168 169 0.179029 ATCCAGGCGTTTTATCCGGG 60.179 55.000 0.00 0.00 38.79 5.73
169 170 1.226746 GATCCAGGCGTTTTATCCGG 58.773 55.000 0.00 0.00 0.00 5.14
170 171 0.859232 CGATCCAGGCGTTTTATCCG 59.141 55.000 0.00 0.00 0.00 4.18
171 172 0.586802 GCGATCCAGGCGTTTTATCC 59.413 55.000 0.00 0.00 0.00 2.59
172 173 1.003866 GTGCGATCCAGGCGTTTTATC 60.004 52.381 0.00 0.00 0.00 1.75
173 174 1.014352 GTGCGATCCAGGCGTTTTAT 58.986 50.000 0.00 0.00 0.00 1.40
174 175 0.320858 TGTGCGATCCAGGCGTTTTA 60.321 50.000 0.00 0.00 0.00 1.52
175 176 1.577328 CTGTGCGATCCAGGCGTTTT 61.577 55.000 0.00 0.00 0.00 2.43
176 177 2.031919 TGTGCGATCCAGGCGTTT 59.968 55.556 0.00 0.00 0.00 3.60
177 178 1.884075 TACTGTGCGATCCAGGCGTT 61.884 55.000 3.03 0.00 34.16 4.84
178 179 1.676678 ATACTGTGCGATCCAGGCGT 61.677 55.000 3.03 0.00 34.16 5.68
179 180 0.313987 TATACTGTGCGATCCAGGCG 59.686 55.000 3.03 0.00 34.16 5.52
180 181 2.526304 TTATACTGTGCGATCCAGGC 57.474 50.000 3.03 0.00 34.16 4.85
181 182 2.794910 CGTTTATACTGTGCGATCCAGG 59.205 50.000 3.03 0.00 34.16 4.45
182 183 2.218759 GCGTTTATACTGTGCGATCCAG 59.781 50.000 0.00 0.00 36.01 3.86
183 184 2.198406 GCGTTTATACTGTGCGATCCA 58.802 47.619 0.00 0.00 0.00 3.41
184 185 2.034001 GTGCGTTTATACTGTGCGATCC 60.034 50.000 0.00 0.00 0.00 3.36
185 186 2.346376 CGTGCGTTTATACTGTGCGATC 60.346 50.000 0.00 0.00 0.00 3.69
186 187 1.586578 CGTGCGTTTATACTGTGCGAT 59.413 47.619 0.00 0.00 0.00 4.58
187 188 0.986270 CGTGCGTTTATACTGTGCGA 59.014 50.000 0.00 0.00 0.00 5.10
188 189 0.986270 TCGTGCGTTTATACTGTGCG 59.014 50.000 0.00 0.00 0.00 5.34
189 190 2.754478 GTTCGTGCGTTTATACTGTGC 58.246 47.619 0.00 0.00 0.00 4.57
190 191 2.222420 CCGTTCGTGCGTTTATACTGTG 60.222 50.000 0.00 0.00 0.00 3.66
191 192 1.987770 CCGTTCGTGCGTTTATACTGT 59.012 47.619 0.00 0.00 0.00 3.55
192 193 1.266696 GCCGTTCGTGCGTTTATACTG 60.267 52.381 0.00 0.00 0.00 2.74
193 194 0.994263 GCCGTTCGTGCGTTTATACT 59.006 50.000 0.00 0.00 0.00 2.12
194 195 0.025384 GGCCGTTCGTGCGTTTATAC 59.975 55.000 0.00 0.00 0.00 1.47
195 196 0.389556 TGGCCGTTCGTGCGTTTATA 60.390 50.000 0.00 0.00 0.00 0.98
196 197 1.668472 TGGCCGTTCGTGCGTTTAT 60.668 52.632 0.00 0.00 0.00 1.40
197 198 2.279985 TGGCCGTTCGTGCGTTTA 60.280 55.556 0.00 0.00 0.00 2.01
198 199 3.944233 GTGGCCGTTCGTGCGTTT 61.944 61.111 0.00 0.00 0.00 3.60
220 221 3.222603 GAGAAGAGGAGAGGAGATCCAC 58.777 54.545 0.92 0.00 39.47 4.02
248 249 4.394712 CAGGCAGACCACCGGACC 62.395 72.222 9.46 0.00 39.06 4.46
292 293 2.027003 TTTTAGGGAACGTATGCCGG 57.973 50.000 0.00 0.00 45.98 6.13
297 298 4.204799 GGATGGCTTTTTAGGGAACGTAT 58.795 43.478 0.00 0.00 0.00 3.06
312 313 1.389609 CGTACGTACCCTGGATGGCT 61.390 60.000 19.67 0.00 0.00 4.75
313 314 1.066918 CGTACGTACCCTGGATGGC 59.933 63.158 19.67 0.00 0.00 4.40
330 332 2.584791 CACGGGAAGAAAAAGAATGCG 58.415 47.619 0.00 0.00 0.00 4.73
331 333 2.328473 GCACGGGAAGAAAAAGAATGC 58.672 47.619 0.00 0.00 0.00 3.56
332 334 2.946564 GGCACGGGAAGAAAAAGAATG 58.053 47.619 0.00 0.00 0.00 2.67
349 351 3.910914 ATAACGCAGGGCAACGGCA 62.911 57.895 3.98 0.00 43.71 5.69
350 352 3.131478 ATAACGCAGGGCAACGGC 61.131 61.111 0.00 0.00 40.13 5.68
351 353 2.791256 CATAACGCAGGGCAACGG 59.209 61.111 0.00 0.00 37.60 4.44
352 354 1.922135 AAGCATAACGCAGGGCAACG 61.922 55.000 0.00 0.00 46.13 4.10
353 355 0.179163 GAAGCATAACGCAGGGCAAC 60.179 55.000 0.00 0.00 46.13 4.17
354 356 1.643868 CGAAGCATAACGCAGGGCAA 61.644 55.000 0.00 0.00 46.13 4.52
355 357 2.106074 CGAAGCATAACGCAGGGCA 61.106 57.895 0.00 0.00 46.13 5.36
356 358 2.036764 GACGAAGCATAACGCAGGGC 62.037 60.000 0.00 0.00 46.13 5.19
357 359 0.460284 AGACGAAGCATAACGCAGGG 60.460 55.000 0.00 0.00 46.13 4.45
358 360 1.061131 CAAGACGAAGCATAACGCAGG 59.939 52.381 0.00 0.00 46.13 4.85
359 361 1.992667 TCAAGACGAAGCATAACGCAG 59.007 47.619 0.00 0.00 46.13 5.18
360 362 2.073117 TCAAGACGAAGCATAACGCA 57.927 45.000 0.00 0.00 46.13 5.24
361 363 3.658351 ATTCAAGACGAAGCATAACGC 57.342 42.857 0.00 0.00 36.95 4.84
362 364 5.515270 TGAGTATTCAAGACGAAGCATAACG 59.485 40.000 0.00 0.00 36.95 3.18
363 365 6.887376 TGAGTATTCAAGACGAAGCATAAC 57.113 37.500 0.00 0.00 36.95 1.89
364 366 7.224753 GGATTGAGTATTCAAGACGAAGCATAA 59.775 37.037 6.81 0.00 45.89 1.90
365 367 6.701841 GGATTGAGTATTCAAGACGAAGCATA 59.298 38.462 6.81 0.00 45.89 3.14
366 368 5.525378 GGATTGAGTATTCAAGACGAAGCAT 59.475 40.000 6.81 0.00 45.89 3.79
367 369 4.870426 GGATTGAGTATTCAAGACGAAGCA 59.130 41.667 6.81 0.00 45.89 3.91
368 370 5.112686 AGGATTGAGTATTCAAGACGAAGC 58.887 41.667 6.81 0.00 45.89 3.86
369 371 7.201565 GGAAAGGATTGAGTATTCAAGACGAAG 60.202 40.741 6.81 0.00 45.89 3.79
370 372 6.594159 GGAAAGGATTGAGTATTCAAGACGAA 59.406 38.462 6.81 0.00 45.89 3.85
371 373 6.106673 GGAAAGGATTGAGTATTCAAGACGA 58.893 40.000 6.81 0.00 45.89 4.20
372 374 5.874810 TGGAAAGGATTGAGTATTCAAGACG 59.125 40.000 6.81 0.00 45.89 4.18
373 375 7.554118 TCATGGAAAGGATTGAGTATTCAAGAC 59.446 37.037 6.81 2.34 45.89 3.01
374 376 7.632861 TCATGGAAAGGATTGAGTATTCAAGA 58.367 34.615 6.81 0.00 45.89 3.02
375 377 7.870509 TCATGGAAAGGATTGAGTATTCAAG 57.129 36.000 6.81 0.00 45.89 3.02
376 378 7.227314 CGATCATGGAAAGGATTGAGTATTCAA 59.773 37.037 2.87 2.87 46.67 2.69
377 379 6.707608 CGATCATGGAAAGGATTGAGTATTCA 59.292 38.462 0.00 0.00 0.00 2.57
378 380 6.708054 ACGATCATGGAAAGGATTGAGTATTC 59.292 38.462 0.00 0.00 0.00 1.75
379 381 6.484643 CACGATCATGGAAAGGATTGAGTATT 59.515 38.462 0.00 0.00 0.00 1.89
380 382 5.994054 CACGATCATGGAAAGGATTGAGTAT 59.006 40.000 0.00 0.00 0.00 2.12
381 383 5.128663 TCACGATCATGGAAAGGATTGAGTA 59.871 40.000 0.00 0.00 0.00 2.59
382 384 4.080919 TCACGATCATGGAAAGGATTGAGT 60.081 41.667 0.00 0.00 0.00 3.41
383 385 4.445453 TCACGATCATGGAAAGGATTGAG 58.555 43.478 0.00 0.00 0.00 3.02
384 386 4.486125 TCACGATCATGGAAAGGATTGA 57.514 40.909 0.00 0.00 0.00 2.57
385 387 4.818005 TGATCACGATCATGGAAAGGATTG 59.182 41.667 5.62 0.00 42.42 2.67
386 388 5.039920 TGATCACGATCATGGAAAGGATT 57.960 39.130 5.62 0.00 42.42 3.01
393 395 3.374988 GCTTGTTTGATCACGATCATGGA 59.625 43.478 10.41 0.00 46.12 3.41
401 403 2.988493 CCCAAATGCTTGTTTGATCACG 59.012 45.455 0.00 0.00 40.64 4.35
415 417 2.283532 TTGGCCGACCCCCAAATG 60.284 61.111 0.00 0.00 39.29 2.32
416 418 2.283604 GTTGGCCGACCCCCAAAT 60.284 61.111 12.67 0.00 43.46 2.32
417 419 3.501040 GAGTTGGCCGACCCCCAAA 62.501 63.158 20.18 0.00 43.46 3.28
418 420 3.961414 GAGTTGGCCGACCCCCAA 61.961 66.667 20.18 0.00 39.91 4.12
419 421 4.974438 AGAGTTGGCCGACCCCCA 62.974 66.667 20.18 0.00 33.59 4.96
420 422 4.410400 CAGAGTTGGCCGACCCCC 62.410 72.222 20.18 9.41 33.59 5.40
421 423 3.637273 ACAGAGTTGGCCGACCCC 61.637 66.667 20.18 11.97 33.59 4.95
422 424 2.185310 ATCACAGAGTTGGCCGACCC 62.185 60.000 20.18 8.24 33.59 4.46
423 425 0.741221 GATCACAGAGTTGGCCGACC 60.741 60.000 20.18 11.22 0.00 4.79
424 426 0.741221 GGATCACAGAGTTGGCCGAC 60.741 60.000 16.08 16.08 0.00 4.79
425 427 1.191489 TGGATCACAGAGTTGGCCGA 61.191 55.000 0.00 0.00 0.00 5.54
426 428 1.296392 TGGATCACAGAGTTGGCCG 59.704 57.895 0.00 0.00 0.00 6.13
436 438 0.321919 GGAAGTGCTGCTGGATCACA 60.322 55.000 5.95 0.00 33.44 3.58
437 439 0.321919 TGGAAGTGCTGCTGGATCAC 60.322 55.000 0.00 0.00 0.00 3.06
438 440 0.401356 TTGGAAGTGCTGCTGGATCA 59.599 50.000 0.00 0.00 0.00 2.92
439 441 1.760192 ATTGGAAGTGCTGCTGGATC 58.240 50.000 0.00 0.00 0.00 3.36
440 442 2.226962 AATTGGAAGTGCTGCTGGAT 57.773 45.000 0.00 0.00 0.00 3.41
441 443 1.888512 GAAATTGGAAGTGCTGCTGGA 59.111 47.619 0.00 0.00 0.00 3.86
442 444 1.891150 AGAAATTGGAAGTGCTGCTGG 59.109 47.619 0.00 0.00 0.00 4.85
443 445 4.771590 TTAGAAATTGGAAGTGCTGCTG 57.228 40.909 0.00 0.00 0.00 4.41
444 446 5.990120 ATTTAGAAATTGGAAGTGCTGCT 57.010 34.783 0.00 0.00 0.00 4.24
467 469 4.418328 CGGCCGGTCCCCAATTCA 62.418 66.667 20.10 0.00 0.00 2.57
497 499 5.468072 CCAGATTGTAAGGATCCTTTCGATG 59.532 44.000 31.45 19.93 37.47 3.84
500 502 5.023533 TCCAGATTGTAAGGATCCTTTCG 57.976 43.478 31.45 17.05 37.47 3.46
501 503 6.659242 TGTTTCCAGATTGTAAGGATCCTTTC 59.341 38.462 31.45 25.81 37.47 2.62
502 504 6.552008 TGTTTCCAGATTGTAAGGATCCTTT 58.448 36.000 31.45 14.30 37.47 3.11
503 505 6.139679 TGTTTCCAGATTGTAAGGATCCTT 57.860 37.500 29.43 29.43 39.83 3.36
504 506 5.779241 TGTTTCCAGATTGTAAGGATCCT 57.221 39.130 9.02 9.02 0.00 3.24
505 507 6.834168 TTTGTTTCCAGATTGTAAGGATCC 57.166 37.500 2.48 2.48 0.00 3.36
523 525 4.082245 AGGAATGGAATCGCGAATTTTGTT 60.082 37.500 15.24 0.11 0.00 2.83
527 529 2.223572 GCAGGAATGGAATCGCGAATTT 60.224 45.455 15.24 2.98 0.00 1.82
534 536 2.033801 GGACAATGCAGGAATGGAATCG 59.966 50.000 0.00 0.00 0.00 3.34
602 832 4.833390 AGACTTTTAGAAACGGAGGGATG 58.167 43.478 0.00 0.00 0.00 3.51
603 833 5.500546 AAGACTTTTAGAAACGGAGGGAT 57.499 39.130 0.00 0.00 0.00 3.85
605 835 6.387041 AAAAAGACTTTTAGAAACGGAGGG 57.613 37.500 13.45 0.00 32.85 4.30
618 848 8.624776 CCACACTGAAATCTCTAAAAAGACTTT 58.375 33.333 0.00 0.00 0.00 2.66
619 849 7.993183 TCCACACTGAAATCTCTAAAAAGACTT 59.007 33.333 0.00 0.00 0.00 3.01
620 850 7.509546 TCCACACTGAAATCTCTAAAAAGACT 58.490 34.615 0.00 0.00 0.00 3.24
621 851 7.730364 TCCACACTGAAATCTCTAAAAAGAC 57.270 36.000 0.00 0.00 0.00 3.01
622 852 8.924511 AATCCACACTGAAATCTCTAAAAAGA 57.075 30.769 0.00 0.00 0.00 2.52
628 858 8.568794 CGTATCTAATCCACACTGAAATCTCTA 58.431 37.037 0.00 0.00 0.00 2.43
629 859 7.429633 CGTATCTAATCCACACTGAAATCTCT 58.570 38.462 0.00 0.00 0.00 3.10
630 860 6.642950 CCGTATCTAATCCACACTGAAATCTC 59.357 42.308 0.00 0.00 0.00 2.75
631 861 6.323996 TCCGTATCTAATCCACACTGAAATCT 59.676 38.462 0.00 0.00 0.00 2.40
632 862 6.513180 TCCGTATCTAATCCACACTGAAATC 58.487 40.000 0.00 0.00 0.00 2.17
633 863 6.479972 TCCGTATCTAATCCACACTGAAAT 57.520 37.500 0.00 0.00 0.00 2.17
634 864 5.925506 TCCGTATCTAATCCACACTGAAA 57.074 39.130 0.00 0.00 0.00 2.69
635 865 6.479972 AATCCGTATCTAATCCACACTGAA 57.520 37.500 0.00 0.00 0.00 3.02
636 866 6.479972 AAATCCGTATCTAATCCACACTGA 57.520 37.500 0.00 0.00 0.00 3.41
642 872 9.797556 CGTCAATATAAATCCGTATCTAATCCA 57.202 33.333 0.00 0.00 0.00 3.41
643 873 9.245962 CCGTCAATATAAATCCGTATCTAATCC 57.754 37.037 0.00 0.00 0.00 3.01
648 878 9.720769 AAAATCCGTCAATATAAATCCGTATCT 57.279 29.630 0.00 0.00 0.00 1.98
652 882 9.204570 CTCTAAAATCCGTCAATATAAATCCGT 57.795 33.333 0.00 0.00 0.00 4.69
653 883 9.204570 ACTCTAAAATCCGTCAATATAAATCCG 57.795 33.333 0.00 0.00 0.00 4.18
660 890 9.482627 GAATCTCACTCTAAAATCCGTCAATAT 57.517 33.333 0.00 0.00 0.00 1.28
661 891 8.474831 TGAATCTCACTCTAAAATCCGTCAATA 58.525 33.333 0.00 0.00 0.00 1.90
662 892 7.278868 GTGAATCTCACTCTAAAATCCGTCAAT 59.721 37.037 0.00 0.00 43.73 2.57
663 893 6.590292 GTGAATCTCACTCTAAAATCCGTCAA 59.410 38.462 0.00 0.00 43.73 3.18
664 894 6.100004 GTGAATCTCACTCTAAAATCCGTCA 58.900 40.000 0.00 0.00 43.73 4.35
665 895 6.576551 GTGAATCTCACTCTAAAATCCGTC 57.423 41.667 0.00 0.00 43.73 4.79
729 959 9.503399 CCTCCGTTCCTAAATATAAGCTTATTT 57.497 33.333 23.47 16.59 36.17 1.40
730 960 8.101419 CCCTCCGTTCCTAAATATAAGCTTATT 58.899 37.037 23.47 9.88 0.00 1.40
731 961 7.456902 TCCCTCCGTTCCTAAATATAAGCTTAT 59.543 37.037 22.09 22.09 0.00 1.73
732 962 6.783977 TCCCTCCGTTCCTAAATATAAGCTTA 59.216 38.462 8.99 8.99 0.00 3.09
733 963 5.605488 TCCCTCCGTTCCTAAATATAAGCTT 59.395 40.000 3.48 3.48 0.00 3.74
734 964 5.152934 TCCCTCCGTTCCTAAATATAAGCT 58.847 41.667 0.00 0.00 0.00 3.74
735 965 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
736 966 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
739 969 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
740 970 8.175431 AGAATATACTCCCTCCGTTCCTAAATA 58.825 37.037 0.00 0.00 0.00 1.40
741 971 7.017531 AGAATATACTCCCTCCGTTCCTAAAT 58.982 38.462 0.00 0.00 0.00 1.40
742 972 6.379579 AGAATATACTCCCTCCGTTCCTAAA 58.620 40.000 0.00 0.00 0.00 1.85
743 973 5.961897 AGAATATACTCCCTCCGTTCCTAA 58.038 41.667 0.00 0.00 0.00 2.69
744 974 5.595814 AGAATATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
745 975 4.472690 AGAATATACTCCCTCCGTTCCT 57.527 45.455 0.00 0.00 0.00 3.36
746 976 4.462132 GGTAGAATATACTCCCTCCGTTCC 59.538 50.000 0.00 0.00 0.00 3.62
747 977 4.155644 CGGTAGAATATACTCCCTCCGTTC 59.844 50.000 0.00 0.00 0.00 3.95
748 978 4.077822 CGGTAGAATATACTCCCTCCGTT 58.922 47.826 0.00 0.00 0.00 4.44
749 979 3.328931 TCGGTAGAATATACTCCCTCCGT 59.671 47.826 8.38 0.00 37.26 4.69
750 980 3.688673 GTCGGTAGAATATACTCCCTCCG 59.311 52.174 0.00 0.00 37.29 4.63
751 981 4.015764 GGTCGGTAGAATATACTCCCTCC 58.984 52.174 0.00 0.00 0.00 4.30
752 982 4.458642 GTGGTCGGTAGAATATACTCCCTC 59.541 50.000 0.00 0.00 0.00 4.30
753 983 4.106019 AGTGGTCGGTAGAATATACTCCCT 59.894 45.833 0.00 0.00 0.00 4.20
754 984 4.217983 CAGTGGTCGGTAGAATATACTCCC 59.782 50.000 0.00 0.00 0.00 4.30
755 985 4.826183 ACAGTGGTCGGTAGAATATACTCC 59.174 45.833 0.00 0.00 0.00 3.85
756 986 6.709846 AGTACAGTGGTCGGTAGAATATACTC 59.290 42.308 0.00 0.00 0.00 2.59
757 987 6.599445 AGTACAGTGGTCGGTAGAATATACT 58.401 40.000 0.00 0.00 0.00 2.12
758 988 6.072783 GGAGTACAGTGGTCGGTAGAATATAC 60.073 46.154 0.00 0.00 0.00 1.47
759 989 6.000219 GGAGTACAGTGGTCGGTAGAATATA 59.000 44.000 0.00 0.00 0.00 0.86
775 1005 8.110271 TCCACTAATCCATCTATAGGAGTACAG 58.890 40.741 0.00 0.00 38.83 2.74
804 1035 3.557475 CCATGTACCGTGGGTTCTGTAAA 60.557 47.826 6.51 0.00 36.92 2.01
818 1049 5.944007 ACAAATTAACCTGAGTCCATGTACC 59.056 40.000 0.00 0.00 0.00 3.34
819 1050 7.448748 AACAAATTAACCTGAGTCCATGTAC 57.551 36.000 0.00 0.00 0.00 2.90
821 1052 6.151144 GCTAACAAATTAACCTGAGTCCATGT 59.849 38.462 0.00 0.00 0.00 3.21
827 1058 6.879458 CACCTAGCTAACAAATTAACCTGAGT 59.121 38.462 0.00 0.00 0.00 3.41
858 1089 1.001048 CAATGTGGACAGTGCAGGTTG 60.001 52.381 0.00 0.00 35.12 3.77
888 1119 9.736023 GATACAATCCCTTTTATCATCACAAAC 57.264 33.333 0.00 0.00 0.00 2.93
907 1138 8.090788 ACTGAATGGTGGTACTAAGATACAAT 57.909 34.615 0.00 0.00 0.00 2.71
920 1151 6.976934 AAAAGATGTAAACTGAATGGTGGT 57.023 33.333 0.00 0.00 0.00 4.16
963 1194 0.098552 TTACCTGCAATGCGAATGCG 59.901 50.000 0.00 0.00 46.76 4.73
964 1195 2.276472 TTTACCTGCAATGCGAATGC 57.724 45.000 0.00 1.61 44.08 3.56
965 1196 6.667370 TGTATATTTACCTGCAATGCGAATG 58.333 36.000 0.00 0.00 0.00 2.67
966 1197 6.710295 TCTGTATATTTACCTGCAATGCGAAT 59.290 34.615 0.00 0.00 0.00 3.34
967 1198 6.052360 TCTGTATATTTACCTGCAATGCGAA 58.948 36.000 0.00 0.00 0.00 4.70
968 1199 5.606505 TCTGTATATTTACCTGCAATGCGA 58.393 37.500 0.00 0.00 0.00 5.10
1058 1289 3.195396 GCTCCAAATCAAATGCCAACCTA 59.805 43.478 0.00 0.00 0.00 3.08
1079 1310 4.610945 ACAAGCAGTTGTGAAAATAGTGC 58.389 39.130 0.00 0.00 45.58 4.40
1113 1344 8.317679 ACAAAAGTTGAGCAGACTAATCTAGAT 58.682 33.333 0.00 0.00 32.25 1.98
1136 1369 0.976641 AAGATCTGCGAGGGACACAA 59.023 50.000 0.00 0.00 0.00 3.33
1147 1395 2.613133 GAGGAGCATGAACAAGATCTGC 59.387 50.000 0.00 0.00 0.00 4.26
1170 1418 2.409870 CGGCCTCCATTCTTGTGGC 61.410 63.158 0.00 0.00 39.19 5.01
1308 1556 7.225784 ACTTATGTGCATGGTTGAAAATGTA 57.774 32.000 0.00 0.00 0.00 2.29
1337 1585 3.539604 AGCTTGTTCACATGATAGAGCC 58.460 45.455 0.00 0.00 0.00 4.70
1349 1597 8.892723 CAAAGGAACATGTATATAGCTTGTTCA 58.107 33.333 24.84 4.67 45.12 3.18
1463 1820 7.865706 ATTTAGTCGCCATAATGTTCTCTTT 57.134 32.000 0.00 0.00 0.00 2.52
1629 1988 7.828717 TGATATATGTACCTTGGGCATGTATTG 59.171 37.037 12.70 0.00 30.67 1.90
1684 2043 7.539710 CACATCATTTGTAGTTTGTTCTCATGG 59.460 37.037 0.00 0.00 36.57 3.66
1760 2119 1.667724 GCTTGTTCGCATGATAGCACT 59.332 47.619 0.00 0.00 0.00 4.40
1817 2214 1.066430 TCGTTTTGCCTCGCCTAGAAT 60.066 47.619 0.00 0.00 0.00 2.40
2268 3102 4.073052 AAGCGCCAAATCGGTTGA 57.927 50.000 2.29 0.00 46.53 3.18
2290 3124 3.207265 CCCCAATGGTCGTTATCATCA 57.793 47.619 0.00 0.00 0.00 3.07
2337 3171 5.835113 AAGTCTTTGTTGTAGCATGTTGT 57.165 34.783 0.00 0.00 0.00 3.32
2377 3233 0.739462 CGGTCCTAGCATTTGTCGCA 60.739 55.000 0.00 0.00 0.00 5.10
2383 3239 1.001633 ACGTTGTCGGTCCTAGCATTT 59.998 47.619 0.00 0.00 41.85 2.32
2419 3275 1.153568 CGGTGACTGCGTGATCCAT 60.154 57.895 0.00 0.00 0.00 3.41
2436 3292 1.569493 CTCGCAGGTTGAAACACCG 59.431 57.895 0.00 0.00 42.33 4.94
2569 3993 1.354040 GCAACTGTCGGATCTGTCAG 58.646 55.000 22.39 22.39 0.00 3.51
2618 4042 3.204827 CAGCGAGGGCCCAAATCG 61.205 66.667 27.56 25.40 41.24 3.34
2646 4070 2.568090 CATCCAGGCGTTTGGTGC 59.432 61.111 7.13 0.00 39.35 5.01
2658 4082 1.538629 TGACTGGACAGCCCATCCA 60.539 57.895 0.00 1.56 45.57 3.41
2682 4106 2.973600 TGGCGTTTTTCCCGTCCG 60.974 61.111 0.00 0.00 0.00 4.79
2684 4108 2.640989 GGTGGCGTTTTTCCCGTC 59.359 61.111 0.00 0.00 0.00 4.79
2708 4132 1.369321 GAGCCGGCTATGAAGAGGG 59.631 63.158 32.97 0.00 0.00 4.30
2714 4138 1.813753 GCGTTTGAGCCGGCTATGA 60.814 57.895 32.97 15.82 0.00 2.15
2725 4149 0.601046 CAGTCAGCCTCAGCGTTTGA 60.601 55.000 0.00 0.00 46.67 2.69
2737 4161 3.636300 AGATATGAGGAGTGTCAGTCAGC 59.364 47.826 9.87 1.65 0.00 4.26
2790 4214 3.803082 CGTGGTGGGCGCATTCTG 61.803 66.667 10.83 0.00 0.00 3.02
2791 4215 4.329545 ACGTGGTGGGCGCATTCT 62.330 61.111 10.83 0.00 0.00 2.40
2831 4255 2.158726 TCTATTTTGTATGGGGTCGGGC 60.159 50.000 0.00 0.00 0.00 6.13
2835 4259 4.790718 AGGGTCTATTTTGTATGGGGTC 57.209 45.455 0.00 0.00 0.00 4.46
2850 4274 1.007721 AGTGGAGTGCAGATAGGGTCT 59.992 52.381 0.00 0.00 37.80 3.85
2870 4294 1.365699 GAATGCGGCTAGGTTTTCGA 58.634 50.000 0.00 0.00 0.00 3.71
2875 4299 0.107654 GAGTGGAATGCGGCTAGGTT 60.108 55.000 0.00 0.00 0.00 3.50
2974 4398 1.550130 GGGGTCAACGGATGTGGAGA 61.550 60.000 0.00 0.00 0.00 3.71
2983 4407 2.573609 GATGAGGTCGGGGTCAACGG 62.574 65.000 0.00 0.00 0.00 4.44
2989 4413 2.687566 GTGGGATGAGGTCGGGGT 60.688 66.667 0.00 0.00 0.00 4.95
3010 4434 0.178947 GATCATCTCCTCCTCGGGGT 60.179 60.000 0.00 0.00 33.68 4.95
3011 4435 1.247419 CGATCATCTCCTCCTCGGGG 61.247 65.000 0.00 0.00 32.98 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.