Multiple sequence alignment - TraesCS1B01G452200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G452200 chr1B 100.000 7094 0 0 1 7094 669157085 669164178 0.000000e+00 13101.0
1 TraesCS1B01G452200 chr1B 90.187 642 17 12 466 1105 1528743 1529340 0.000000e+00 795.0
2 TraesCS1B01G452200 chr1D 91.133 3214 172 51 406 3575 480887983 480891127 0.000000e+00 4252.0
3 TraesCS1B01G452200 chr1D 92.279 2901 147 33 3607 6477 480891257 480894110 0.000000e+00 4045.0
4 TraesCS1B01G452200 chr1D 85.776 232 17 1 6671 6902 480894597 480894812 1.540000e-56 231.0
5 TraesCS1B01G452200 chr1D 96.154 130 5 0 6492 6621 480894346 480894475 5.570000e-51 213.0
6 TraesCS1B01G452200 chr1D 94.828 58 3 0 3568 3625 480891170 480891227 2.730000e-14 91.6
7 TraesCS1B01G452200 chr1D 83.333 90 14 1 68 157 480887350 480887438 1.640000e-11 82.4
8 TraesCS1B01G452200 chr1A 91.505 3037 170 36 3607 6621 577471662 577474632 0.000000e+00 4098.0
9 TraesCS1B01G452200 chr1A 85.856 2220 152 70 174 2328 577467812 577469934 0.000000e+00 2211.0
10 TraesCS1B01G452200 chr1A 94.054 1194 48 17 2389 3573 577470348 577471527 0.000000e+00 1790.0
11 TraesCS1B01G452200 chr1A 90.377 478 35 7 6623 7094 577474822 577475294 1.010000e-172 617.0
12 TraesCS1B01G452200 chr1A 96.364 55 2 0 3568 3622 577471579 577471633 2.730000e-14 91.6
13 TraesCS1B01G452200 chr4A 85.820 1347 123 29 3607 4932 652850908 652852207 0.000000e+00 1367.0
14 TraesCS1B01G452200 chr4A 79.487 312 29 16 4974 5271 652852363 652852653 9.390000e-44 189.0
15 TraesCS1B01G452200 chr4A 83.125 160 20 4 3854 4008 107803579 107803422 9.600000e-29 139.0
16 TraesCS1B01G452200 chr4A 82.500 160 21 4 3854 4008 107845549 107845392 4.460000e-27 134.0
17 TraesCS1B01G452200 chr3D 81.384 419 78 0 1811 2229 307228229 307228647 6.810000e-90 342.0
18 TraesCS1B01G452200 chr3D 79.479 307 45 14 3126 3417 307229343 307229646 1.210000e-47 202.0
19 TraesCS1B01G452200 chr3B 81.146 419 79 0 1811 2229 414025154 414024736 3.170000e-88 337.0
20 TraesCS1B01G452200 chr3B 79.048 315 45 16 3126 3423 414024041 414023731 5.610000e-46 196.0
21 TraesCS1B01G452200 chr3A 80.668 419 81 0 1811 2229 426871421 426871003 6.860000e-85 326.0
22 TraesCS1B01G452200 chr3A 79.618 314 44 15 3126 3423 426870405 426870096 2.590000e-49 207.0
23 TraesCS1B01G452200 chr3A 83.544 158 18 5 3854 4005 329552063 329552218 2.670000e-29 141.0
24 TraesCS1B01G452200 chr5D 83.750 160 19 4 3854 4008 199426118 199425961 2.060000e-30 145.0
25 TraesCS1B01G452200 chr7D 81.988 161 20 4 3855 4008 587255496 587255338 2.080000e-25 128.0
26 TraesCS1B01G452200 chr7A 80.864 162 21 4 3855 4008 679162172 679162013 1.250000e-22 119.0
27 TraesCS1B01G452200 chr5A 97.297 37 1 0 2784 2820 570323818 570323782 5.940000e-06 63.9
28 TraesCS1B01G452200 chr2A 97.297 37 1 0 2784 2820 569586679 569586715 5.940000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G452200 chr1B 669157085 669164178 7093 False 13101.000000 13101 100.000000 1 7094 1 chr1B.!!$F2 7093
1 TraesCS1B01G452200 chr1B 1528743 1529340 597 False 795.000000 795 90.187000 466 1105 1 chr1B.!!$F1 639
2 TraesCS1B01G452200 chr1D 480887350 480894812 7462 False 1485.833333 4252 90.583833 68 6902 6 chr1D.!!$F1 6834
3 TraesCS1B01G452200 chr1A 577467812 577475294 7482 False 1761.520000 4098 91.631200 174 7094 5 chr1A.!!$F1 6920
4 TraesCS1B01G452200 chr4A 652850908 652852653 1745 False 778.000000 1367 82.653500 3607 5271 2 chr4A.!!$F1 1664
5 TraesCS1B01G452200 chr3D 307228229 307229646 1417 False 272.000000 342 80.431500 1811 3417 2 chr3D.!!$F1 1606
6 TraesCS1B01G452200 chr3B 414023731 414025154 1423 True 266.500000 337 80.097000 1811 3423 2 chr3B.!!$R1 1612
7 TraesCS1B01G452200 chr3A 426870096 426871421 1325 True 266.500000 326 80.143000 1811 3423 2 chr3A.!!$R1 1612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.033504 GGGCTTCGATATCGCCAAGA 59.966 55.000 23.44 5.25 45.53 3.02 F
420 731 0.178990 AGCCCTCTGGTTGGTGAAAC 60.179 55.000 0.00 0.00 38.12 2.78 F
583 982 0.389166 CAGAGGAGTCCAACGAGCAC 60.389 60.000 12.86 0.00 0.00 4.40 F
1776 2260 0.606401 TTAGCAGCTGGGTGTTGAGC 60.606 55.000 17.12 0.00 35.28 4.26 F
2165 2649 0.670546 AGGCCAACGATGACTTGACG 60.671 55.000 5.01 0.00 0.00 4.35 F
2525 3366 1.597937 CCAAAGTGTGACTTGCTTCGC 60.598 52.381 0.00 0.00 38.66 4.70 F
4119 5242 1.752501 CGTAATCAGCGAGCCCAACG 61.753 60.000 0.00 0.00 0.00 4.10 F
5560 6841 0.871057 GTGCTTCTCAGGCTTCACAC 59.129 55.000 0.00 0.00 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 2289 0.038343 CCGAACCCTGCAAAACATGG 60.038 55.000 0.00 0.00 39.80 3.66 R
2067 2551 0.911525 TCCTTTCTGGAGGGAGGCAG 60.912 60.000 0.00 0.00 40.56 4.85 R
2504 3345 1.597937 CGAAGCAAGTCACACTTTGGC 60.598 52.381 0.00 0.00 36.03 4.52 R
2757 3604 2.548920 GGGATGATCTACGGCCTCAAAG 60.549 54.545 0.00 0.00 0.00 2.77 R
4109 5232 0.600255 AGAGTCAAACGTTGGGCTCG 60.600 55.000 27.15 2.28 37.78 5.03 R
4147 5270 3.973206 TGCTTTCTCATTTCGGACCTA 57.027 42.857 0.00 0.00 0.00 3.08 R
5744 7031 0.035725 TTGTGGGATCTGCTGCTGAG 60.036 55.000 14.50 0.00 0.00 3.35 R
6705 8442 0.250467 AGTGTGCTAACAGTGGGCAG 60.250 55.000 7.72 0.00 38.58 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.329545 CCGACCCACCCACCACTG 62.330 72.222 0.00 0.00 0.00 3.66
52 53 4.329545 CGACCCACCCACCACTGG 62.330 72.222 0.00 0.00 37.29 4.00
53 54 4.660938 GACCCACCCACCACTGGC 62.661 72.222 0.00 0.00 36.00 4.85
55 56 4.351054 CCCACCCACCACTGGCTC 62.351 72.222 0.00 0.00 36.00 4.70
56 57 3.252284 CCACCCACCACTGGCTCT 61.252 66.667 0.00 0.00 36.00 4.09
57 58 2.033141 CACCCACCACTGGCTCTG 59.967 66.667 0.00 0.00 36.00 3.35
58 59 2.448542 ACCCACCACTGGCTCTGT 60.449 61.111 0.00 0.00 36.00 3.41
59 60 2.348998 CCCACCACTGGCTCTGTC 59.651 66.667 0.00 0.00 36.00 3.51
60 61 2.047844 CCACCACTGGCTCTGTCG 60.048 66.667 0.00 0.00 0.00 4.35
61 62 2.740055 CACCACTGGCTCTGTCGC 60.740 66.667 0.00 0.00 0.00 5.19
62 63 2.919856 ACCACTGGCTCTGTCGCT 60.920 61.111 0.00 0.00 0.00 4.93
63 64 2.433838 CCACTGGCTCTGTCGCTG 60.434 66.667 0.00 0.00 0.00 5.18
64 65 3.117171 CACTGGCTCTGTCGCTGC 61.117 66.667 0.00 0.00 0.00 5.25
65 66 3.309506 ACTGGCTCTGTCGCTGCT 61.310 61.111 0.00 0.00 0.00 4.24
66 67 2.508887 CTGGCTCTGTCGCTGCTC 60.509 66.667 0.00 0.00 0.00 4.26
67 68 4.426112 TGGCTCTGTCGCTGCTCG 62.426 66.667 0.00 0.00 40.15 5.03
68 69 4.121669 GGCTCTGTCGCTGCTCGA 62.122 66.667 0.00 0.00 46.29 4.04
90 91 4.712476 AGAGAGCAATTGAACTGTGAAGT 58.288 39.130 10.34 0.00 0.00 3.01
95 96 5.051891 GCAATTGAACTGTGAAGTGCTAT 57.948 39.130 10.34 0.00 39.46 2.97
98 99 6.546395 CAATTGAACTGTGAAGTGCTATACC 58.454 40.000 0.00 0.00 0.00 2.73
99 100 4.882842 TGAACTGTGAAGTGCTATACCA 57.117 40.909 0.00 0.00 0.00 3.25
100 101 4.566004 TGAACTGTGAAGTGCTATACCAC 58.434 43.478 0.00 0.00 35.98 4.16
109 110 3.296854 AGTGCTATACCACTGATCGGAA 58.703 45.455 9.00 0.00 44.00 4.30
157 158 2.432628 CGGGGCTTCGATATCGCC 60.433 66.667 20.34 15.04 43.03 5.54
158 159 2.741092 GGGGCTTCGATATCGCCA 59.259 61.111 20.34 8.32 45.53 5.69
159 160 1.070786 GGGGCTTCGATATCGCCAA 59.929 57.895 20.34 9.46 45.53 4.52
161 162 0.033504 GGGCTTCGATATCGCCAAGA 59.966 55.000 23.44 5.25 45.53 3.02
163 164 0.787183 GCTTCGATATCGCCAAGAGC 59.213 55.000 23.44 19.35 39.60 4.09
164 165 1.423395 CTTCGATATCGCCAAGAGCC 58.577 55.000 20.34 0.00 38.78 4.70
165 166 0.750249 TTCGATATCGCCAAGAGCCA 59.250 50.000 20.34 0.00 38.78 4.75
166 167 0.750249 TCGATATCGCCAAGAGCCAA 59.250 50.000 20.34 0.00 38.78 4.52
167 168 1.143305 CGATATCGCCAAGAGCCAAG 58.857 55.000 12.95 0.00 38.78 3.61
168 169 0.871057 GATATCGCCAAGAGCCAAGC 59.129 55.000 0.00 0.00 38.78 4.01
170 171 0.462581 TATCGCCAAGAGCCAAGCAG 60.463 55.000 0.00 0.00 38.78 4.24
171 172 2.189191 ATCGCCAAGAGCCAAGCAGA 62.189 55.000 0.00 0.00 38.78 4.26
172 173 1.748122 CGCCAAGAGCCAAGCAGAT 60.748 57.895 0.00 0.00 38.78 2.90
173 174 0.462581 CGCCAAGAGCCAAGCAGATA 60.463 55.000 0.00 0.00 38.78 1.98
174 175 1.307097 GCCAAGAGCCAAGCAGATAG 58.693 55.000 0.00 0.00 34.35 2.08
175 176 1.134280 GCCAAGAGCCAAGCAGATAGA 60.134 52.381 0.00 0.00 34.35 1.98
177 178 3.244353 GCCAAGAGCCAAGCAGATAGATA 60.244 47.826 0.00 0.00 34.35 1.98
178 179 4.565236 GCCAAGAGCCAAGCAGATAGATAT 60.565 45.833 0.00 0.00 34.35 1.63
180 181 5.177326 CAAGAGCCAAGCAGATAGATATCC 58.823 45.833 0.00 0.00 33.17 2.59
181 182 4.423913 AGAGCCAAGCAGATAGATATCCA 58.576 43.478 0.00 0.00 33.17 3.41
182 183 4.842948 AGAGCCAAGCAGATAGATATCCAA 59.157 41.667 0.00 0.00 33.17 3.53
183 184 5.488203 AGAGCCAAGCAGATAGATATCCAAT 59.512 40.000 0.00 0.00 33.17 3.16
184 185 5.498393 AGCCAAGCAGATAGATATCCAATG 58.502 41.667 0.00 0.00 33.17 2.82
185 186 4.096081 GCCAAGCAGATAGATATCCAATGC 59.904 45.833 0.00 5.49 33.88 3.56
186 187 5.498393 CCAAGCAGATAGATATCCAATGCT 58.502 41.667 13.58 13.58 40.95 3.79
187 188 6.647229 CCAAGCAGATAGATATCCAATGCTA 58.353 40.000 17.57 0.00 39.39 3.49
199 200 8.939929 AGATATCCAATGCTATTGTTATTCACG 58.060 33.333 0.00 0.00 0.00 4.35
202 203 7.566760 TCCAATGCTATTGTTATTCACGATT 57.433 32.000 0.00 0.00 31.22 3.34
208 209 5.455525 GCTATTGTTATTCACGATTGCCAAC 59.544 40.000 0.00 0.00 40.39 3.77
238 239 2.354003 CCAACCATTGCAAGGCTTTAGG 60.354 50.000 5.36 0.00 0.00 2.69
313 314 4.566759 TGTCTCGTAAATCTGCAGCATTAC 59.433 41.667 21.86 21.86 0.00 1.89
315 316 5.063438 GTCTCGTAAATCTGCAGCATTACAA 59.937 40.000 26.81 16.47 0.00 2.41
316 317 5.063438 TCTCGTAAATCTGCAGCATTACAAC 59.937 40.000 26.81 17.06 0.00 3.32
317 318 4.693095 TCGTAAATCTGCAGCATTACAACA 59.307 37.500 26.81 15.32 0.00 3.33
326 327 4.213270 TGCAGCATTACAACAGAGTGTAAC 59.787 41.667 0.00 0.00 44.53 2.50
349 634 2.447250 AGTGCACATAACGATACGACG 58.553 47.619 21.04 0.00 39.31 5.12
359 644 1.273688 CGATACGACGGACAATGCAA 58.726 50.000 0.00 0.00 0.00 4.08
393 704 5.717119 ACGACCGTAACTGATTCTATGTTT 58.283 37.500 0.00 0.00 0.00 2.83
409 720 7.009179 TCTATGTTTTCCATATAGCCCTCTG 57.991 40.000 0.00 0.00 35.50 3.35
420 731 0.178990 AGCCCTCTGGTTGGTGAAAC 60.179 55.000 0.00 0.00 38.12 2.78
448 838 7.339721 CCTGTGATACCTTTCACTAGTCTTCTA 59.660 40.741 0.00 0.00 45.07 2.10
583 982 0.389166 CAGAGGAGTCCAACGAGCAC 60.389 60.000 12.86 0.00 0.00 4.40
643 1054 4.166011 GCCCAGACGCAACGCATC 62.166 66.667 0.00 0.00 0.00 3.91
644 1055 2.434884 CCCAGACGCAACGCATCT 60.435 61.111 0.00 0.00 0.00 2.90
645 1056 2.456119 CCCAGACGCAACGCATCTC 61.456 63.158 0.00 0.00 0.00 2.75
676 1102 4.285003 TCTCTCTCCCGATTAAAACCAACA 59.715 41.667 0.00 0.00 0.00 3.33
948 1416 4.735358 GGGCAGGGGTCCGGTTTC 62.735 72.222 0.00 0.00 0.00 2.78
1090 1558 3.969899 TCATGCGTCTAGTATGAGCAAG 58.030 45.455 0.00 0.00 45.02 4.01
1143 1615 3.691342 CTGCCCGTCTCGGTTCCA 61.691 66.667 7.40 1.40 46.80 3.53
1174 1647 4.084888 CGGCGACCCAGCGTTTTC 62.085 66.667 0.00 0.00 38.18 2.29
1185 1658 1.079503 AGCGTTTTCTGAATCCTCGC 58.920 50.000 15.48 15.48 41.96 5.03
1186 1659 1.079503 GCGTTTTCTGAATCCTCGCT 58.920 50.000 15.77 0.00 39.26 4.93
1187 1660 1.201965 GCGTTTTCTGAATCCTCGCTG 60.202 52.381 15.77 0.00 39.26 5.18
1188 1661 1.201965 CGTTTTCTGAATCCTCGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
1189 1662 1.131315 GTTTTCTGAATCCTCGCTGCC 59.869 52.381 0.00 0.00 0.00 4.85
1234 1707 6.624352 TCAAACCTCTTTGACAGATTCTTG 57.376 37.500 0.00 0.00 40.76 3.02
1257 1730 3.060540 GCTACTTTTGTTGCTTTTTCGGC 60.061 43.478 0.00 0.00 45.31 5.54
1260 1733 1.148759 TTTGTTGCTTTTTCGGCGCC 61.149 50.000 19.07 19.07 0.00 6.53
1262 1735 4.335584 TTGCTTTTTCGGCGCCGG 62.336 61.111 44.95 30.49 40.25 6.13
1287 1760 1.432270 CTTCCTGCCGCCGAAATCTC 61.432 60.000 0.00 0.00 0.00 2.75
1295 1768 0.857935 CGCCGAAATCTCTGATCTGC 59.142 55.000 0.00 0.00 0.00 4.26
1302 1775 4.033817 CGAAATCTCTGATCTGCTGTTTCC 59.966 45.833 0.00 0.00 0.00 3.13
1310 1783 3.006430 TGATCTGCTGTTTCCGTCAGTAA 59.994 43.478 0.00 0.00 35.60 2.24
1313 1786 3.807622 TCTGCTGTTTCCGTCAGTAAAAG 59.192 43.478 0.00 0.00 35.60 2.27
1318 1792 5.662211 TGTTTCCGTCAGTAAAAGTTAGC 57.338 39.130 0.00 0.00 0.00 3.09
1353 1827 1.676006 GGTTCCAATCCAATACGGCAG 59.324 52.381 0.00 0.00 33.14 4.85
1412 1886 1.578206 GCAAAGTTGACCGCCTCCTC 61.578 60.000 0.00 0.00 0.00 3.71
1464 1947 2.464459 CGAAGTCCGCAAGATGCCC 61.464 63.158 0.00 0.00 41.12 5.36
1505 1988 2.975248 TGGCGCGCAAAGCTTGTA 60.975 55.556 34.42 3.80 45.59 2.41
1506 1989 2.501865 GGCGCGCAAAGCTTGTAC 60.502 61.111 34.42 7.22 45.59 2.90
1544 2027 3.781770 GAGTCCTCGCAGATGCCCG 62.782 68.421 0.00 0.00 37.91 6.13
1608 2091 5.982465 TTTAAACTGTTTGATTGCTTGCC 57.018 34.783 15.69 0.00 0.00 4.52
1615 2098 2.144833 TTGATTGCTTGCCGGTGCTG 62.145 55.000 1.90 0.00 38.71 4.41
1626 2109 1.576421 CGGTGCTGTGGCTTTTCTC 59.424 57.895 0.00 0.00 39.59 2.87
1631 2114 1.614903 TGCTGTGGCTTTTCTCAATGG 59.385 47.619 0.00 0.00 39.59 3.16
1639 2122 2.353109 GCTTTTCTCAATGGCTGGTTCC 60.353 50.000 0.00 0.00 0.00 3.62
1684 2168 2.555199 CCTGTCGGTCTCCAATGATTC 58.445 52.381 0.00 0.00 0.00 2.52
1702 2186 2.436109 CTCCAACCCCCACCACAG 59.564 66.667 0.00 0.00 0.00 3.66
1723 2207 1.089920 AATCATTGTGCCGTCTCAGC 58.910 50.000 0.00 0.00 0.00 4.26
1760 2244 8.139521 ACCGTTTAAAGTTCTCTCTGTTTTAG 57.860 34.615 0.00 0.00 0.00 1.85
1770 2254 1.808945 CTCTGTTTTAGCAGCTGGGTG 59.191 52.381 17.12 0.00 36.49 4.61
1776 2260 0.606401 TTAGCAGCTGGGTGTTGAGC 60.606 55.000 17.12 0.00 35.28 4.26
1778 2262 3.730761 CAGCTGGGTGTTGAGCGC 61.731 66.667 5.57 0.00 40.34 5.92
1805 2289 5.050644 TGATTCATTCAGTGTGTGCAATC 57.949 39.130 0.00 3.81 0.00 2.67
1844 2328 1.878656 CGGAGGCGGACTTCTTCACT 61.879 60.000 0.00 0.00 0.00 3.41
1886 2370 3.070302 GGTACAAGATCCAGGAGGTCATC 59.930 52.174 0.00 0.00 35.89 2.92
2093 2577 2.639839 TCCCTCCAGAAAGGACTTCAAG 59.360 50.000 0.00 0.00 43.07 3.02
2165 2649 0.670546 AGGCCAACGATGACTTGACG 60.671 55.000 5.01 0.00 0.00 4.35
2174 2658 2.091277 CGATGACTTGACGAAAGAGCAC 59.909 50.000 9.13 0.00 39.38 4.40
2229 2713 5.009010 GCCCTCAAATACATTCATACTGGTG 59.991 44.000 0.00 0.00 0.00 4.17
2265 2749 5.758296 CCTTCAAGTCTACTGTTGTTGCTTA 59.242 40.000 0.00 0.00 0.00 3.09
2360 2844 7.502226 TCTTTTCATCTCTTTTTCACTTGCCTA 59.498 33.333 0.00 0.00 0.00 3.93
2362 2846 6.992063 TCATCTCTTTTTCACTTGCCTATC 57.008 37.500 0.00 0.00 0.00 2.08
2495 3336 6.365970 ACAGATCCTCAGTAACAGTTGATT 57.634 37.500 0.00 0.00 0.00 2.57
2504 3345 8.499162 CCTCAGTAACAGTTGATTCTTTAAGTG 58.501 37.037 0.00 0.00 34.28 3.16
2510 3351 6.507023 ACAGTTGATTCTTTAAGTGCCAAAG 58.493 36.000 0.00 0.00 34.87 2.77
2525 3366 1.597937 CCAAAGTGTGACTTGCTTCGC 60.598 52.381 0.00 0.00 38.66 4.70
2637 3483 4.532276 CGTTTGCTTTGTGCTACACATTA 58.468 39.130 0.57 0.00 44.16 1.90
2641 3487 5.856126 TGCTTTGTGCTACACATTACTAC 57.144 39.130 0.57 0.00 44.16 2.73
2650 3496 8.528643 TGTGCTACACATTACTACTTCACTATT 58.471 33.333 0.00 0.00 39.62 1.73
2737 3584 9.750783 ATATATTAGCCTGCATTCTCTGAATTT 57.249 29.630 0.00 0.00 0.00 1.82
2744 3591 6.627508 GCCTGCATTCTCTGAATTTCTTGAAT 60.628 38.462 0.00 2.99 0.00 2.57
2792 3639 5.930135 AGATCATCCCGTAGCTAAAACAAT 58.070 37.500 0.00 0.00 0.00 2.71
2840 3687 6.188407 AGTAGCAGTCAAGATAAGTACCAGA 58.812 40.000 0.00 0.00 0.00 3.86
2873 3772 2.687935 TGCAACCTTTGTTCACCTCTTC 59.312 45.455 0.00 0.00 30.42 2.87
2881 3780 6.324770 ACCTTTGTTCACCTCTTCAAATGAAT 59.675 34.615 0.00 0.00 33.85 2.57
2884 3783 9.918630 CTTTGTTCACCTCTTCAAATGAATTAT 57.081 29.630 0.00 0.00 33.85 1.28
2991 3982 5.136828 TCTTTTCCACTTACTTGCCATCAA 58.863 37.500 0.00 0.00 0.00 2.57
3007 3998 3.991773 CCATCAAAAAGCTTGTCATGGTG 59.008 43.478 15.39 11.32 0.00 4.17
3509 4522 7.602644 TGACAGGCTTATAGTGTAACAAAGAAG 59.397 37.037 0.00 0.00 41.43 2.85
3567 4580 2.554032 GTGAGCTGTAACAGGCAAATGT 59.446 45.455 0.00 0.00 33.96 2.71
3570 4583 4.824537 TGAGCTGTAACAGGCAAATGTTTA 59.175 37.500 0.00 0.00 40.47 2.01
3612 4731 6.463049 GCACTATGTACCTGTTCATCCTATGT 60.463 42.308 0.00 0.00 0.00 2.29
3786 4909 9.877178 CCTCTTGAATAGTAACTTTGACTACAT 57.123 33.333 0.00 0.00 32.34 2.29
3826 4949 6.560253 TCCAAGAACAGTAAAAGCATCTTC 57.440 37.500 0.00 0.00 0.00 2.87
3827 4950 5.473504 TCCAAGAACAGTAAAAGCATCTTCC 59.526 40.000 0.00 0.00 0.00 3.46
3850 4973 6.094881 TCCGTAATTTCCAGGATTTTGATCAC 59.905 38.462 0.00 0.00 0.00 3.06
4022 5145 6.074648 AGACTTAATGACTGATCTCCTAGGG 58.925 44.000 9.46 0.00 0.00 3.53
4055 5178 2.798847 GGATACAATTTCTCGGGTACGC 59.201 50.000 0.00 0.00 40.69 4.42
4109 5232 3.717707 TGATCTGGTAAGCGTAATCAGC 58.282 45.455 0.00 0.00 0.00 4.26
4118 5241 2.006772 CGTAATCAGCGAGCCCAAC 58.993 57.895 0.00 0.00 0.00 3.77
4119 5242 1.752501 CGTAATCAGCGAGCCCAACG 61.753 60.000 0.00 0.00 0.00 4.10
4132 5255 4.501071 GAGCCCAACGTTTGACTCTATTA 58.499 43.478 8.21 0.00 33.54 0.98
4248 5371 3.463048 AATGCAGATCCTTTGGGAGTT 57.537 42.857 0.00 0.00 45.86 3.01
4379 5502 8.105097 TCTGTTTGCAGCATTAGTTTGTTATA 57.895 30.769 0.00 0.00 42.29 0.98
4380 5503 8.739039 TCTGTTTGCAGCATTAGTTTGTTATAT 58.261 29.630 0.00 0.00 42.29 0.86
4429 5552 9.442047 TGTTTCCTTCAATGTTTGTATTTTGTT 57.558 25.926 0.00 0.00 0.00 2.83
4607 5738 2.475187 CGCAATTGCTGAAGAGCTACAC 60.475 50.000 26.86 0.00 46.39 2.90
4683 5814 7.129109 TGTTTCTATTCCGTCATTTCTGTTC 57.871 36.000 0.00 0.00 0.00 3.18
4684 5815 6.708502 TGTTTCTATTCCGTCATTTCTGTTCA 59.291 34.615 0.00 0.00 0.00 3.18
4714 5845 7.331934 TGTCAACTCTTACTGACAGCAATATTC 59.668 37.037 1.25 0.00 45.31 1.75
4716 5847 5.352284 ACTCTTACTGACAGCAATATTCCG 58.648 41.667 1.25 0.00 0.00 4.30
4717 5848 4.119862 TCTTACTGACAGCAATATTCCGC 58.880 43.478 1.25 0.00 0.00 5.54
4748 5879 2.995939 TGTCAGTGCTGTCGATCATTTC 59.004 45.455 0.00 0.00 0.00 2.17
4853 5984 5.488341 AGGTAATGTTGCATCGTACTCTTT 58.512 37.500 0.00 0.00 0.00 2.52
4897 6028 5.182570 CCTTCCATATCACTGGCACATAATG 59.817 44.000 0.00 0.00 38.20 1.90
4948 6089 6.488006 GCTCCTTTGCTTCATATTAAGATGGA 59.512 38.462 10.08 0.32 0.00 3.41
5060 6326 4.020543 AGAGTGAAGTGACTGGGATCTAC 58.979 47.826 0.00 0.00 0.00 2.59
5149 6428 5.884232 GGAACTTAATACCCGGTTTTCTCAT 59.116 40.000 0.00 0.00 0.00 2.90
5151 6430 6.057321 ACTTAATACCCGGTTTTCTCATCA 57.943 37.500 0.00 0.00 0.00 3.07
5261 6541 7.118390 CGAGGTTCTGTTTGAAATCTAAGTGAT 59.882 37.037 0.00 0.00 36.30 3.06
5308 6589 4.338012 TGTTGATACTCGAGACCCACTTA 58.662 43.478 21.68 0.00 0.00 2.24
5363 6644 3.127548 CACACCTGTATGCCTTTCATCAC 59.872 47.826 0.00 0.00 36.63 3.06
5560 6841 0.871057 GTGCTTCTCAGGCTTCACAC 59.129 55.000 0.00 0.00 0.00 3.82
5576 6857 4.308458 ACGCGGCACAAGCAGGTA 62.308 61.111 12.47 0.00 44.61 3.08
5579 6860 3.788766 CGGCACAAGCAGGTACGC 61.789 66.667 0.00 0.00 44.61 4.42
5581 6862 3.431725 GCACAAGCAGGTACGCCC 61.432 66.667 0.00 0.00 41.58 6.13
5624 6908 9.086336 ACATGTTTTGTTGTCATTTACTTGAAG 57.914 29.630 0.00 0.00 33.74 3.02
5626 6910 7.093354 TGTTTTGTTGTCATTTACTTGAAGCA 58.907 30.769 0.00 0.00 0.00 3.91
5636 6920 8.125448 GTCATTTACTTGAAGCATAATGTCTCC 58.875 37.037 11.61 1.06 0.00 3.71
5641 6925 5.954150 ACTTGAAGCATAATGTCTCCCATTT 59.046 36.000 0.00 0.00 41.01 2.32
5642 6926 6.096001 ACTTGAAGCATAATGTCTCCCATTTC 59.904 38.462 0.00 0.00 41.01 2.17
5649 6933 6.995091 GCATAATGTCTCCCATTTCTAAGACT 59.005 38.462 0.00 0.00 41.01 3.24
5685 6969 2.512515 ATTTCGCGGAGAGCTGCC 60.513 61.111 6.13 0.00 43.67 4.85
5744 7031 1.430369 ATTAGCCCAGGATGCCCTCC 61.430 60.000 0.00 0.00 42.02 4.30
5798 7085 3.915575 GCATCAAGCACCTCCTGG 58.084 61.111 0.00 0.00 44.79 4.45
5881 7168 4.241999 GCACGGCGCCTAATGCTG 62.242 66.667 29.41 15.13 44.36 4.41
5882 7169 4.241999 CACGGCGCCTAATGCTGC 62.242 66.667 26.68 0.00 42.55 5.25
5883 7170 4.473520 ACGGCGCCTAATGCTGCT 62.474 61.111 26.68 0.00 42.55 4.24
5929 7216 0.179009 CCCCTATCGACACCTACCGA 60.179 60.000 0.00 0.00 39.25 4.69
5946 7233 4.699522 ACGGGGCAGAAGAACGGC 62.700 66.667 0.00 0.00 38.89 5.68
5964 7251 4.007644 CCGCTGGACAGACTGGCA 62.008 66.667 11.27 0.00 0.00 4.92
6105 7392 3.548415 CGACTTACTAGCGGCTAAGAAGG 60.548 52.174 23.75 11.67 0.00 3.46
6128 7415 4.919987 GCGGCGCGTACCTAGACC 62.920 72.222 19.09 0.00 0.00 3.85
6142 7429 4.011517 GACCCTTCGGCCGGAACA 62.012 66.667 27.83 1.61 0.00 3.18
6239 7526 5.335269 CGAAGGCATACAGAGATAGTAGGTG 60.335 48.000 0.00 0.00 0.00 4.00
6240 7527 3.829601 AGGCATACAGAGATAGTAGGTGC 59.170 47.826 0.00 0.00 30.51 5.01
6255 7542 1.351017 AGGTGCGAAATCCTCTTCCAA 59.649 47.619 0.00 0.00 0.00 3.53
6293 7601 1.117142 ACAAAAGACGGAGGGACGGA 61.117 55.000 0.00 0.00 38.39 4.69
6323 7631 3.933332 AGACGAGCTGTTTATTTAGGTGC 59.067 43.478 0.00 0.00 0.00 5.01
6408 7717 2.894126 AGTCTGTACTGTGCTACTGCTT 59.106 45.455 0.00 0.00 35.73 3.91
6483 7823 6.490566 TCATCATATGATTCATTTGCTCGG 57.509 37.500 15.74 0.65 33.59 4.63
6524 8054 1.614903 TGAAACTGCAATGCCCTTGAG 59.385 47.619 1.53 0.00 36.97 3.02
6539 8069 4.521146 CCCTTGAGTTTCTGCATCTACAT 58.479 43.478 0.00 0.00 0.00 2.29
6595 8125 7.012799 GCCCCTTGACTTTCTCTATCTAAAATG 59.987 40.741 0.00 0.00 0.00 2.32
6638 8375 7.762588 TCTACTAAAGCCAGTATCACTATCC 57.237 40.000 0.00 0.00 30.78 2.59
6664 8401 4.852134 TTGCATTGACAGTAGCAACAAT 57.148 36.364 7.05 0.00 41.55 2.71
6665 8402 5.956068 TTGCATTGACAGTAGCAACAATA 57.044 34.783 7.05 0.00 41.55 1.90
6666 8403 5.956068 TGCATTGACAGTAGCAACAATAA 57.044 34.783 0.00 0.00 33.48 1.40
6700 8437 6.161381 AGAGCAAAATTTCACCATTGTCATC 58.839 36.000 0.00 0.00 0.00 2.92
6705 8442 7.376601 GCAAAATTTCACCATTGTCATCAAAAC 59.623 33.333 0.00 0.00 37.11 2.43
6707 8444 7.718272 AATTTCACCATTGTCATCAAAACTG 57.282 32.000 0.00 0.00 37.11 3.16
6723 8460 0.535102 ACTGCCCACTGTTAGCACAC 60.535 55.000 0.00 0.00 32.06 3.82
6728 8465 2.289444 GCCCACTGTTAGCACACTAAGA 60.289 50.000 0.00 0.00 39.05 2.10
6737 8474 7.385205 ACTGTTAGCACACTAAGAAACTACATG 59.615 37.037 0.00 0.00 39.05 3.21
6745 8482 6.936900 ACACTAAGAAACTACATGCATTCACT 59.063 34.615 0.00 0.00 0.00 3.41
6779 8516 5.353956 TCAATCCAAATACGTCCATTCACTG 59.646 40.000 0.00 0.00 0.00 3.66
6796 8533 3.694072 TCACTGTTAGCCCATTTGCATAC 59.306 43.478 0.00 0.00 0.00 2.39
6797 8534 2.682856 ACTGTTAGCCCATTTGCATACG 59.317 45.455 0.00 0.00 0.00 3.06
6798 8535 2.682856 CTGTTAGCCCATTTGCATACGT 59.317 45.455 0.00 0.00 0.00 3.57
6799 8536 3.874543 CTGTTAGCCCATTTGCATACGTA 59.125 43.478 0.00 0.00 0.00 3.57
6800 8537 4.262617 TGTTAGCCCATTTGCATACGTAA 58.737 39.130 0.00 0.00 0.00 3.18
6801 8538 4.700692 TGTTAGCCCATTTGCATACGTAAA 59.299 37.500 0.00 0.00 0.00 2.01
6802 8539 3.775661 AGCCCATTTGCATACGTAAAC 57.224 42.857 0.00 0.00 28.96 2.01
6803 8540 3.085533 AGCCCATTTGCATACGTAAACA 58.914 40.909 0.00 0.00 28.96 2.83
6804 8541 3.699038 AGCCCATTTGCATACGTAAACAT 59.301 39.130 0.00 0.00 28.96 2.71
6805 8542 4.041723 GCCCATTTGCATACGTAAACATC 58.958 43.478 0.00 0.00 28.96 3.06
6806 8543 4.606961 CCCATTTGCATACGTAAACATCC 58.393 43.478 0.00 0.00 28.96 3.51
6807 8544 4.278858 CCATTTGCATACGTAAACATCCG 58.721 43.478 0.00 0.00 28.96 4.18
6808 8545 4.201871 CCATTTGCATACGTAAACATCCGT 60.202 41.667 0.00 0.00 40.87 4.69
6809 8546 4.587211 TTTGCATACGTAAACATCCGTC 57.413 40.909 0.00 0.00 38.43 4.79
6810 8547 2.542597 TGCATACGTAAACATCCGTCC 58.457 47.619 0.00 0.00 38.43 4.79
6811 8548 2.094130 TGCATACGTAAACATCCGTCCA 60.094 45.455 0.00 0.00 38.43 4.02
6843 8596 1.331756 CCAAGCCTTCATACGCATCAC 59.668 52.381 0.00 0.00 0.00 3.06
6845 8598 2.679837 CAAGCCTTCATACGCATCACTT 59.320 45.455 0.00 0.00 0.00 3.16
6852 8605 5.580691 CCTTCATACGCATCACTTGAGTAAA 59.419 40.000 0.00 0.00 42.74 2.01
6976 8729 4.168291 GCGAGGGCAAGGCTAGCT 62.168 66.667 15.72 0.00 39.62 3.32
6989 8742 4.423625 AGGCTAGCTCGGATAATTTGTT 57.576 40.909 15.72 0.00 0.00 2.83
6991 8744 5.193679 AGGCTAGCTCGGATAATTTGTTTT 58.806 37.500 15.72 0.00 0.00 2.43
7018 8777 9.803315 GTTTTGTTTTCTGGTTTCTAGATCTTT 57.197 29.630 0.00 0.00 0.00 2.52
7034 8793 8.467598 TCTAGATCTTTCATGTACCAGTTACAC 58.532 37.037 0.00 0.00 43.71 2.90
7038 8797 7.433708 TCTTTCATGTACCAGTTACACATTG 57.566 36.000 0.00 0.00 43.71 2.82
7056 8815 7.665690 ACACATTGCATAGTTCCACAAATAAA 58.334 30.769 0.00 0.00 0.00 1.40
7057 8816 8.147058 ACACATTGCATAGTTCCACAAATAAAA 58.853 29.630 0.00 0.00 0.00 1.52
7081 8840 6.806388 ATATGCGCAATTCTAATGTCATGA 57.194 33.333 17.11 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.329545 CAGTGGTGGGTGGGTCGG 62.330 72.222 0.00 0.00 0.00 4.79
35 36 4.329545 CCAGTGGTGGGTGGGTCG 62.330 72.222 0.00 0.00 40.67 4.79
36 37 4.660938 GCCAGTGGTGGGTGGGTC 62.661 72.222 11.74 0.00 45.17 4.46
42 43 2.348998 GACAGAGCCAGTGGTGGG 59.651 66.667 11.74 0.87 45.17 4.61
44 45 2.740055 GCGACAGAGCCAGTGGTG 60.740 66.667 11.74 3.68 0.00 4.17
45 46 2.919856 AGCGACAGAGCCAGTGGT 60.920 61.111 11.74 0.00 38.01 4.16
46 47 2.433838 CAGCGACAGAGCCAGTGG 60.434 66.667 4.20 4.20 38.01 4.00
47 48 3.117171 GCAGCGACAGAGCCAGTG 61.117 66.667 0.00 0.00 38.01 3.66
48 49 3.293901 GAGCAGCGACAGAGCCAGT 62.294 63.158 0.00 0.00 38.01 4.00
49 50 2.508887 GAGCAGCGACAGAGCCAG 60.509 66.667 0.00 0.00 38.01 4.85
50 51 4.426112 CGAGCAGCGACAGAGCCA 62.426 66.667 0.00 0.00 44.57 4.75
51 52 4.121669 TCGAGCAGCGACAGAGCC 62.122 66.667 0.00 0.00 45.59 4.70
52 53 2.579249 CTCGAGCAGCGACAGAGC 60.579 66.667 0.00 0.00 45.59 4.09
53 54 1.062365 CTCTCGAGCAGCGACAGAG 59.938 63.158 7.81 3.86 45.59 3.35
54 55 1.365368 CTCTCTCGAGCAGCGACAGA 61.365 60.000 7.81 2.43 45.59 3.41
55 56 1.062365 CTCTCTCGAGCAGCGACAG 59.938 63.158 7.81 0.00 45.59 3.51
56 57 3.182312 CTCTCTCGAGCAGCGACA 58.818 61.111 7.81 0.00 45.59 4.35
64 65 3.367327 CACAGTTCAATTGCTCTCTCGAG 59.633 47.826 5.93 5.93 40.35 4.04
65 66 3.005791 TCACAGTTCAATTGCTCTCTCGA 59.994 43.478 0.00 0.00 0.00 4.04
66 67 3.320626 TCACAGTTCAATTGCTCTCTCG 58.679 45.455 0.00 0.00 0.00 4.04
67 68 4.754114 ACTTCACAGTTCAATTGCTCTCTC 59.246 41.667 0.00 0.00 0.00 3.20
68 69 4.514441 CACTTCACAGTTCAATTGCTCTCT 59.486 41.667 0.00 0.00 0.00 3.10
69 70 4.781071 CACTTCACAGTTCAATTGCTCTC 58.219 43.478 0.00 0.00 0.00 3.20
70 71 3.004106 GCACTTCACAGTTCAATTGCTCT 59.996 43.478 0.00 0.00 0.00 4.09
71 72 3.004106 AGCACTTCACAGTTCAATTGCTC 59.996 43.478 0.00 0.00 34.42 4.26
72 73 2.954318 AGCACTTCACAGTTCAATTGCT 59.046 40.909 0.00 2.38 34.62 3.91
73 74 3.360249 AGCACTTCACAGTTCAATTGC 57.640 42.857 0.00 0.00 0.00 3.56
74 75 6.149308 TGGTATAGCACTTCACAGTTCAATTG 59.851 38.462 0.00 0.00 0.00 2.32
75 76 6.149474 GTGGTATAGCACTTCACAGTTCAATT 59.851 38.462 24.38 0.00 0.00 2.32
76 77 5.643777 GTGGTATAGCACTTCACAGTTCAAT 59.356 40.000 24.38 0.00 0.00 2.57
80 81 4.283467 TCAGTGGTATAGCACTTCACAGTT 59.717 41.667 30.11 8.82 0.00 3.16
84 85 4.045104 CGATCAGTGGTATAGCACTTCAC 58.955 47.826 30.11 21.79 0.00 3.18
90 91 4.746535 TTTTCCGATCAGTGGTATAGCA 57.253 40.909 0.00 0.00 0.00 3.49
109 110 3.143168 TCCTTAGGGGGTCCAACATTTTT 59.857 43.478 0.00 0.00 35.33 1.94
113 114 1.596496 CTCCTTAGGGGGTCCAACAT 58.404 55.000 0.00 0.00 35.33 2.71
116 117 4.933607 CCTCCTTAGGGGGTCCAA 57.066 61.111 9.54 0.00 39.48 3.53
157 158 5.177326 GGATATCTATCTGCTTGGCTCTTG 58.823 45.833 2.05 0.00 33.28 3.02
158 159 4.842948 TGGATATCTATCTGCTTGGCTCTT 59.157 41.667 2.05 0.00 33.28 2.85
159 160 4.423913 TGGATATCTATCTGCTTGGCTCT 58.576 43.478 2.05 0.00 33.28 4.09
161 162 5.498393 CATTGGATATCTATCTGCTTGGCT 58.502 41.667 2.05 0.00 33.28 4.75
163 164 5.498393 AGCATTGGATATCTATCTGCTTGG 58.502 41.667 16.25 0.00 38.05 3.61
164 165 8.613482 CAATAGCATTGGATATCTATCTGCTTG 58.387 37.037 22.90 15.88 40.22 4.01
165 166 8.327271 ACAATAGCATTGGATATCTATCTGCTT 58.673 33.333 22.90 13.14 40.22 3.91
166 167 7.859540 ACAATAGCATTGGATATCTATCTGCT 58.140 34.615 21.98 21.98 41.56 4.24
167 168 8.503458 AACAATAGCATTGGATATCTATCTGC 57.497 34.615 13.18 13.18 33.88 4.26
173 174 8.939929 CGTGAATAACAATAGCATTGGATATCT 58.060 33.333 2.05 0.00 0.00 1.98
174 175 8.935844 TCGTGAATAACAATAGCATTGGATATC 58.064 33.333 11.76 0.00 0.00 1.63
175 176 8.846943 TCGTGAATAACAATAGCATTGGATAT 57.153 30.769 11.76 7.96 0.00 1.63
177 178 7.750229 ATCGTGAATAACAATAGCATTGGAT 57.250 32.000 11.76 4.32 0.00 3.41
178 179 7.416817 CAATCGTGAATAACAATAGCATTGGA 58.583 34.615 11.76 2.62 0.00 3.53
180 181 6.142798 GGCAATCGTGAATAACAATAGCATTG 59.857 38.462 7.16 7.16 0.00 2.82
181 182 6.183360 TGGCAATCGTGAATAACAATAGCATT 60.183 34.615 0.00 0.00 0.00 3.56
182 183 5.299028 TGGCAATCGTGAATAACAATAGCAT 59.701 36.000 0.00 0.00 0.00 3.79
183 184 4.637977 TGGCAATCGTGAATAACAATAGCA 59.362 37.500 0.00 0.00 0.00 3.49
184 185 5.168526 TGGCAATCGTGAATAACAATAGC 57.831 39.130 0.00 0.00 0.00 2.97
185 186 5.676744 CGTTGGCAATCGTGAATAACAATAG 59.323 40.000 1.92 0.00 0.00 1.73
186 187 5.564768 CGTTGGCAATCGTGAATAACAATA 58.435 37.500 1.92 0.00 0.00 1.90
187 188 4.411327 CGTTGGCAATCGTGAATAACAAT 58.589 39.130 1.92 0.00 0.00 2.71
199 200 1.226128 GAGCTTCGCGTTGGCAATC 60.226 57.895 5.77 0.00 39.92 2.67
202 203 4.617520 TGGAGCTTCGCGTTGGCA 62.618 61.111 5.77 0.00 39.92 4.92
208 209 1.135315 CAATGGTTGGAGCTTCGCG 59.865 57.895 0.00 0.00 0.00 5.87
215 216 0.971386 AAGCCTTGCAATGGTTGGAG 59.029 50.000 16.76 0.00 32.80 3.86
238 239 6.643388 AGATTGGAACCTTGGAAATAAATGC 58.357 36.000 0.00 0.00 0.00 3.56
287 288 3.618594 TGCTGCAGATTTACGAGACATTC 59.381 43.478 20.43 0.00 0.00 2.67
292 293 4.754322 TGTAATGCTGCAGATTTACGAGA 58.246 39.130 20.43 5.88 0.00 4.04
294 295 4.693095 TGTTGTAATGCTGCAGATTTACGA 59.307 37.500 20.43 19.00 0.00 3.43
296 297 6.128172 ACTCTGTTGTAATGCTGCAGATTTAC 60.128 38.462 20.43 21.84 35.91 2.01
298 299 4.763793 ACTCTGTTGTAATGCTGCAGATTT 59.236 37.500 20.43 12.24 35.91 2.17
300 301 3.688185 CACTCTGTTGTAATGCTGCAGAT 59.312 43.478 20.43 5.31 35.91 2.90
313 314 3.246226 GTGCACTCTGTTACACTCTGTTG 59.754 47.826 10.32 0.00 0.00 3.33
315 316 2.430694 TGTGCACTCTGTTACACTCTGT 59.569 45.455 19.41 0.00 34.14 3.41
316 317 3.097877 TGTGCACTCTGTTACACTCTG 57.902 47.619 19.41 0.00 34.14 3.35
317 318 5.230942 GTTATGTGCACTCTGTTACACTCT 58.769 41.667 19.41 0.00 34.14 3.24
326 327 3.482472 GTCGTATCGTTATGTGCACTCTG 59.518 47.826 19.41 3.69 0.00 3.35
349 634 2.830186 TAGCGGGGGTTGCATTGTCC 62.830 60.000 0.00 0.00 33.85 4.02
359 644 4.073200 CGGTCGTTTAGCGGGGGT 62.073 66.667 0.00 0.00 45.25 4.95
380 691 8.105829 AGGGCTATATGGAAAACATAGAATCAG 58.894 37.037 0.00 0.00 44.79 2.90
393 704 2.711009 CCAACCAGAGGGCTATATGGAA 59.289 50.000 10.22 0.00 37.90 3.53
409 720 2.341846 TCACAGGAGTTTCACCAACC 57.658 50.000 0.00 0.00 35.77 3.77
643 1054 0.478507 GGGAGAGAGAGGGAGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
644 1055 1.349542 CGGGAGAGAGAGGGAGAGGA 61.350 65.000 0.00 0.00 0.00 3.71
645 1056 1.150536 CGGGAGAGAGAGGGAGAGG 59.849 68.421 0.00 0.00 0.00 3.69
676 1102 0.099791 CCGACTTGCCGTTGTTGTTT 59.900 50.000 0.00 0.00 0.00 2.83
702 1128 9.057089 GGTAGATTTCTTTCTCTTCTTTGTGAA 57.943 33.333 0.00 0.00 0.00 3.18
1090 1558 2.793933 GCAAGAAGAGGCGCAAATCATC 60.794 50.000 10.83 6.68 0.00 2.92
1140 1612 2.721167 CGGCTTCGTCCTGGATGGA 61.721 63.158 15.67 6.39 43.86 3.41
1141 1613 2.202932 CGGCTTCGTCCTGGATGG 60.203 66.667 15.67 3.84 37.10 3.51
1142 1614 2.202932 CCGGCTTCGTCCTGGATG 60.203 66.667 9.73 9.73 0.00 3.51
1143 1615 4.162690 GCCGGCTTCGTCCTGGAT 62.163 66.667 22.15 0.00 0.00 3.41
1174 1647 1.523258 CAGGGCAGCGAGGATTCAG 60.523 63.158 0.00 0.00 0.00 3.02
1185 1658 1.114722 TTGAAAACAGGGCAGGGCAG 61.115 55.000 0.00 0.00 0.00 4.85
1186 1659 0.689080 TTTGAAAACAGGGCAGGGCA 60.689 50.000 0.00 0.00 0.00 5.36
1187 1660 0.686789 ATTTGAAAACAGGGCAGGGC 59.313 50.000 0.00 0.00 0.00 5.19
1188 1661 2.368221 TGAATTTGAAAACAGGGCAGGG 59.632 45.455 0.00 0.00 0.00 4.45
1189 1662 3.749665 TGAATTTGAAAACAGGGCAGG 57.250 42.857 0.00 0.00 0.00 4.85
1234 1707 3.489416 CCGAAAAAGCAACAAAAGTAGCC 59.511 43.478 0.00 0.00 0.00 3.93
1274 1747 0.249657 AGATCAGAGATTTCGGCGGC 60.250 55.000 7.21 0.00 0.00 6.53
1275 1748 1.495878 CAGATCAGAGATTTCGGCGG 58.504 55.000 7.21 0.00 0.00 6.13
1276 1749 0.857935 GCAGATCAGAGATTTCGGCG 59.142 55.000 0.00 0.00 0.00 6.46
1287 1760 1.998315 CTGACGGAAACAGCAGATCAG 59.002 52.381 0.00 0.00 34.16 2.90
1295 1768 5.235616 TGCTAACTTTTACTGACGGAAACAG 59.764 40.000 0.00 0.00 40.68 3.16
1302 1775 5.900339 TTGACTGCTAACTTTTACTGACG 57.100 39.130 0.00 0.00 0.00 4.35
1310 1783 2.884639 ACGGCATTTGACTGCTAACTTT 59.115 40.909 0.00 0.00 41.95 2.66
1313 1786 1.201921 CGACGGCATTTGACTGCTAAC 60.202 52.381 0.00 0.00 41.95 2.34
1318 1792 0.165944 GAACCGACGGCATTTGACTG 59.834 55.000 15.39 0.00 0.00 3.51
1353 1827 3.857854 CAGCTCATCACGCGGTGC 61.858 66.667 12.47 4.95 32.98 5.01
1388 1862 1.659794 GCGGTCAACTTTGCCATGT 59.340 52.632 0.00 0.00 0.00 3.21
1412 1886 2.125147 TGGATTCAGGAAGCGGCG 60.125 61.111 0.51 0.51 0.00 6.46
1464 1947 2.681421 GGCAGGCAGGGGAAAAGG 60.681 66.667 0.00 0.00 0.00 3.11
1544 2027 1.952635 GTTGCTTGCTGTTGCTGGC 60.953 57.895 0.00 0.00 40.48 4.85
1546 2029 1.659335 CGGTTGCTTGCTGTTGCTG 60.659 57.895 0.00 0.00 40.48 4.41
1547 2030 2.723746 CGGTTGCTTGCTGTTGCT 59.276 55.556 0.00 0.00 40.48 3.91
1548 2031 2.355009 CCGGTTGCTTGCTGTTGC 60.355 61.111 0.00 0.00 40.20 4.17
1549 2032 2.355009 GCCGGTTGCTTGCTGTTG 60.355 61.111 1.90 0.00 36.87 3.33
1550 2033 3.964875 CGCCGGTTGCTTGCTGTT 61.965 61.111 1.90 0.00 38.05 3.16
1608 2091 1.165907 TGAGAAAAGCCACAGCACCG 61.166 55.000 0.00 0.00 43.56 4.94
1615 2098 1.067354 CCAGCCATTGAGAAAAGCCAC 60.067 52.381 0.00 0.00 0.00 5.01
1626 2109 1.080569 GCAACGGAACCAGCCATTG 60.081 57.895 0.00 0.00 0.00 2.82
1631 2114 0.664166 CACATTGCAACGGAACCAGC 60.664 55.000 0.00 0.00 0.00 4.85
1639 2122 1.081242 GAGTGGCCACATTGCAACG 60.081 57.895 36.39 0.00 40.26 4.10
1664 2147 2.555199 GAATCATTGGAGACCGACAGG 58.445 52.381 0.00 0.00 45.13 4.00
1684 2168 3.182263 TGTGGTGGGGGTTGGAGG 61.182 66.667 0.00 0.00 0.00 4.30
1702 2186 0.804364 TGAGACGGCACAATGATTGC 59.196 50.000 4.84 0.00 39.41 3.56
1729 2213 5.932883 AGAGAGAACTTTAAACGGTTGATCC 59.067 40.000 0.00 0.00 0.00 3.36
1730 2214 6.424207 ACAGAGAGAACTTTAAACGGTTGATC 59.576 38.462 0.00 0.00 0.00 2.92
1760 2244 3.730761 CGCTCAACACCCAGCTGC 61.731 66.667 8.66 0.00 33.09 5.25
1789 2273 3.159472 ACATGGATTGCACACACTGAAT 58.841 40.909 0.00 0.00 0.00 2.57
1790 2274 2.585330 ACATGGATTGCACACACTGAA 58.415 42.857 0.00 0.00 0.00 3.02
1791 2275 2.275134 ACATGGATTGCACACACTGA 57.725 45.000 0.00 0.00 0.00 3.41
1792 2276 3.374220 AAACATGGATTGCACACACTG 57.626 42.857 0.00 0.00 0.00 3.66
1793 2277 3.719924 CAAAACATGGATTGCACACACT 58.280 40.909 0.00 0.00 0.00 3.55
1805 2289 0.038343 CCGAACCCTGCAAAACATGG 60.038 55.000 0.00 0.00 39.80 3.66
1886 2370 4.530857 CCGTAGCTCCCCTTGCCG 62.531 72.222 0.00 0.00 0.00 5.69
2067 2551 0.911525 TCCTTTCTGGAGGGAGGCAG 60.912 60.000 0.00 0.00 40.56 4.85
2093 2577 4.213482 AGCTCAAAAACAACGTAGATGTCC 59.787 41.667 0.00 0.00 44.60 4.02
2165 2649 5.301555 AGAAAGAACTGGTAGTGCTCTTTC 58.698 41.667 19.07 19.07 44.51 2.62
2174 2658 4.464597 AGCTGGTAGAGAAAGAACTGGTAG 59.535 45.833 0.00 0.00 0.00 3.18
2229 2713 7.273815 CAGTAGACTTGAAGGTAACGATTTCTC 59.726 40.741 0.00 0.00 46.39 2.87
2265 2749 6.816136 CCTTCAGGGTAAAACATTGTTTTCT 58.184 36.000 26.25 16.65 0.00 2.52
2495 3336 4.523083 AGTCACACTTTGGCACTTAAAGA 58.477 39.130 3.78 0.00 38.26 2.52
2504 3345 1.597937 CGAAGCAAGTCACACTTTGGC 60.598 52.381 0.00 0.00 36.03 4.52
2525 3366 5.063691 TGTTGTTAACTTGGTTGACTACACG 59.936 40.000 14.36 0.00 40.38 4.49
2702 3549 8.834004 AATGCAGGCTAATATATGAATGGATT 57.166 30.769 0.00 0.00 0.00 3.01
2706 3553 8.613482 CAGAGAATGCAGGCTAATATATGAATG 58.387 37.037 0.00 0.00 0.00 2.67
2712 3559 9.224267 GAAATTCAGAGAATGCAGGCTAATATA 57.776 33.333 0.00 0.00 0.00 0.86
2723 3570 8.530269 AACAATTCAAGAAATTCAGAGAATGC 57.470 30.769 7.83 0.00 35.32 3.56
2757 3604 2.548920 GGGATGATCTACGGCCTCAAAG 60.549 54.545 0.00 0.00 0.00 2.77
2767 3614 5.839621 TGTTTTAGCTACGGGATGATCTAC 58.160 41.667 0.00 0.00 0.00 2.59
2792 3639 6.654959 TCCCTCCGTTTCATAATTATTGTCA 58.345 36.000 0.00 0.00 0.00 3.58
2840 3687 5.018809 ACAAAGGTTGCATCAGATAATGGT 58.981 37.500 0.00 0.00 0.00 3.55
2853 3752 2.687935 TGAAGAGGTGAACAAAGGTTGC 59.312 45.455 0.00 0.00 37.36 4.17
2928 3905 4.664150 ATTACAGAGTCTTGGCTAGAGC 57.336 45.455 0.00 0.00 41.14 4.09
2991 3982 4.734398 TTCAACACCATGACAAGCTTTT 57.266 36.364 0.00 0.00 0.00 2.27
3007 3998 6.363357 GCAATTTCTGGTAGTGTCAATTCAAC 59.637 38.462 0.00 0.00 0.00 3.18
3509 4522 7.019774 TCATGCTAGAACAATTGTAAGCATC 57.980 36.000 32.31 19.95 42.26 3.91
3639 4758 9.634021 TGACAGTGAACAGATCTAATCTATACT 57.366 33.333 0.00 0.00 37.58 2.12
3786 4909 7.773224 TGTTCTTGGAAGTAAGAGAAATTCACA 59.227 33.333 0.00 0.00 37.91 3.58
3792 4915 9.675464 TTTTACTGTTCTTGGAAGTAAGAGAAA 57.325 29.630 0.00 0.00 37.61 2.52
3826 4949 6.127758 TGTGATCAAAATCCTGGAAATTACGG 60.128 38.462 0.00 0.00 0.00 4.02
3827 4950 6.851609 TGTGATCAAAATCCTGGAAATTACG 58.148 36.000 0.00 0.00 0.00 3.18
3850 4973 9.976511 ATCCAAAATAGATTAAGAACATGCATG 57.023 29.630 25.09 25.09 0.00 4.06
3941 5064 2.433838 CCTGTCAGCACCTCAGCG 60.434 66.667 0.00 0.00 40.15 5.18
4016 5139 2.196595 TCCATTGAAGGTGTCCCTAGG 58.803 52.381 0.06 0.06 41.56 3.02
4022 5145 7.396540 AGAAATTGTATCCATTGAAGGTGTC 57.603 36.000 0.00 0.00 0.00 3.67
4089 5212 2.726760 CGCTGATTACGCTTACCAGATC 59.273 50.000 0.00 0.00 0.00 2.75
4090 5213 2.361119 TCGCTGATTACGCTTACCAGAT 59.639 45.455 0.00 0.00 0.00 2.90
4099 5222 1.813753 TTGGGCTCGCTGATTACGC 60.814 57.895 0.00 0.00 0.00 4.42
4100 5223 1.752501 CGTTGGGCTCGCTGATTACG 61.753 60.000 0.00 0.00 0.00 3.18
4104 5227 1.302511 AAACGTTGGGCTCGCTGAT 60.303 52.632 0.00 0.00 0.00 2.90
4109 5232 0.600255 AGAGTCAAACGTTGGGCTCG 60.600 55.000 27.15 2.28 37.78 5.03
4142 5265 5.488341 CTTTCTCATTTCGGACCTAGGAAA 58.512 41.667 17.98 5.74 36.66 3.13
4147 5270 3.973206 TGCTTTCTCATTTCGGACCTA 57.027 42.857 0.00 0.00 0.00 3.08
4248 5371 6.384305 AGGCTAATAGCTTCTCCAAGAGTTTA 59.616 38.462 12.41 0.00 41.99 2.01
4385 5508 9.975218 AAGGAAACATTACAACTTACTCCATAT 57.025 29.630 0.00 0.00 0.00 1.78
4429 5552 5.894298 AAGTATGGATCAGTCAATGCCTA 57.106 39.130 0.00 0.00 0.00 3.93
4607 5738 0.900421 TGTCCTCTCTGTGCCATCAG 59.100 55.000 0.00 0.00 36.85 2.90
4671 5802 6.498304 AGTTGACACAATGAACAGAAATGAC 58.502 36.000 0.00 0.00 0.00 3.06
4683 5814 5.333645 GCTGTCAGTAAGAGTTGACACAATG 60.334 44.000 0.93 0.00 46.27 2.82
4684 5815 4.752101 GCTGTCAGTAAGAGTTGACACAAT 59.248 41.667 0.93 0.00 46.27 2.71
4714 5845 1.136085 CACTGACAAACATAACCGCGG 60.136 52.381 26.86 26.86 0.00 6.46
4716 5847 1.535462 AGCACTGACAAACATAACCGC 59.465 47.619 0.00 0.00 0.00 5.68
4717 5848 2.548057 ACAGCACTGACAAACATAACCG 59.452 45.455 4.31 0.00 0.00 4.44
4748 5879 5.236282 TCAAGATGAGAGAACTGCTTCTTG 58.764 41.667 0.00 0.00 36.82 3.02
4853 5984 8.317679 TGGAAGGAAAAGAAATGAACAAAAGAA 58.682 29.630 0.00 0.00 0.00 2.52
4997 6263 9.177608 CCAGTTCACTATCCAGATAAAATCAAA 57.822 33.333 0.00 0.00 0.00 2.69
5002 6268 5.191722 AGCCCAGTTCACTATCCAGATAAAA 59.808 40.000 0.00 0.00 0.00 1.52
5003 6269 4.721776 AGCCCAGTTCACTATCCAGATAAA 59.278 41.667 0.00 0.00 0.00 1.40
5060 6326 3.653344 TCTTTGAACTCCTGTGATCACG 58.347 45.455 20.54 14.58 0.00 4.35
5149 6428 4.715534 TCAATTGTAACCCCAACTCTGA 57.284 40.909 5.13 0.00 0.00 3.27
5151 6430 8.502738 ACATATATCAATTGTAACCCCAACTCT 58.497 33.333 5.13 0.00 0.00 3.24
5261 6541 6.048732 TCTGAACACATACTGATTAAGCCA 57.951 37.500 0.00 0.00 0.00 4.75
5560 6841 3.788766 GTACCTGCTTGTGCCGCG 61.789 66.667 0.00 0.00 38.71 6.46
5609 6890 8.565896 AGACATTATGCTTCAAGTAAATGACA 57.434 30.769 13.38 0.00 0.00 3.58
5611 6892 7.283127 GGGAGACATTATGCTTCAAGTAAATGA 59.717 37.037 13.38 0.00 0.00 2.57
5649 6933 8.009409 CGCGAAATCACTGCATAATAAGAAATA 58.991 33.333 0.00 0.00 0.00 1.40
5660 6944 0.108186 TCTCCGCGAAATCACTGCAT 60.108 50.000 8.23 0.00 0.00 3.96
5668 6952 2.512515 GGCAGCTCTCCGCGAAAT 60.513 61.111 8.23 0.00 45.59 2.17
5685 6969 2.601763 GTCATAAGGTAACGCTGAACCG 59.398 50.000 0.00 0.00 46.39 4.44
5744 7031 0.035725 TTGTGGGATCTGCTGCTGAG 60.036 55.000 14.50 0.00 0.00 3.35
5745 7032 0.401356 TTTGTGGGATCTGCTGCTGA 59.599 50.000 11.69 11.69 0.00 4.26
5746 7033 1.134367 CATTTGTGGGATCTGCTGCTG 59.866 52.381 0.00 0.00 0.00 4.41
5795 7082 2.981909 CACCAGCACCAGCACCAG 60.982 66.667 0.00 0.00 45.49 4.00
5797 7084 4.962836 AGCACCAGCACCAGCACC 62.963 66.667 0.00 0.00 45.49 5.01
5798 7085 3.667282 CAGCACCAGCACCAGCAC 61.667 66.667 0.00 0.00 45.49 4.40
5799 7086 4.960866 CCAGCACCAGCACCAGCA 62.961 66.667 0.00 0.00 45.49 4.41
5895 7182 4.512914 GGGGGTGCTCTCATGGCC 62.513 72.222 0.00 0.00 0.00 5.36
5916 7203 2.747460 CCCGTCGGTAGGTGTCGA 60.747 66.667 11.06 0.00 0.00 4.20
5925 7212 2.920912 TTCTTCTGCCCCGTCGGT 60.921 61.111 11.06 0.00 0.00 4.69
5929 7216 4.699522 GCCGTTCTTCTGCCCCGT 62.700 66.667 0.00 0.00 0.00 5.28
5946 7233 4.767255 GCCAGTCTGTCCAGCGGG 62.767 72.222 0.00 0.00 0.00 6.13
6142 7429 1.686110 CCTCCCTCCGGTTGCTACT 60.686 63.158 0.00 0.00 0.00 2.57
6207 7494 4.884257 TATGCCTTCGCCGCCGTC 62.884 66.667 0.00 0.00 35.54 4.79
6210 7497 3.272334 CTGTATGCCTTCGCCGCC 61.272 66.667 0.00 0.00 0.00 6.13
6211 7498 2.202878 TCTGTATGCCTTCGCCGC 60.203 61.111 0.00 0.00 0.00 6.53
6214 7501 3.651803 ACTATCTCTGTATGCCTTCGC 57.348 47.619 0.00 0.00 0.00 4.70
6239 7526 1.661112 CGACTTGGAAGAGGATTTCGC 59.339 52.381 0.00 0.00 0.00 4.70
6240 7527 2.924290 GACGACTTGGAAGAGGATTTCG 59.076 50.000 0.00 0.00 0.00 3.46
6255 7542 2.290134 TGTGTGTAGCCTAGAGACGACT 60.290 50.000 0.00 0.00 0.00 4.18
6293 7601 2.267006 CAGCTCGTCTGGCCACAT 59.733 61.111 0.00 0.00 39.15 3.21
6367 7676 6.037500 CAGACTTCATTTCTGTGTTGAGTTGA 59.962 38.462 0.00 0.00 36.50 3.18
6432 7741 6.070656 TCAATGGACCATCATCCCTTTAATC 58.929 40.000 7.63 0.00 38.06 1.75
6483 7823 7.448748 TTCAGTCTAAGGGCAACTATTTTTC 57.551 36.000 0.00 0.00 0.00 2.29
6565 8095 0.322906 GAGAAAGTCAAGGGGCCCAG 60.323 60.000 27.72 17.43 0.00 4.45
6621 8151 5.653255 ATTTGGGATAGTGATACTGGCTT 57.347 39.130 0.00 0.00 0.00 4.35
6627 8364 7.141363 GTCAATGCAATTTGGGATAGTGATAC 58.859 38.462 0.00 0.00 31.22 2.24
6638 8375 4.177165 TGCTACTGTCAATGCAATTTGG 57.823 40.909 0.00 0.00 31.22 3.28
6663 8400 9.066892 TGAAATTTTGCTCTCTGTAGTTGTTAT 57.933 29.630 0.00 0.00 0.00 1.89
6664 8401 8.342634 GTGAAATTTTGCTCTCTGTAGTTGTTA 58.657 33.333 0.00 0.00 0.00 2.41
6665 8402 7.196331 GTGAAATTTTGCTCTCTGTAGTTGTT 58.804 34.615 0.00 0.00 0.00 2.83
6666 8403 6.238759 GGTGAAATTTTGCTCTCTGTAGTTGT 60.239 38.462 0.00 0.00 0.00 3.32
6700 8437 1.680735 TGCTAACAGTGGGCAGTTTTG 59.319 47.619 0.00 0.00 0.00 2.44
6705 8442 0.250467 AGTGTGCTAACAGTGGGCAG 60.250 55.000 7.72 0.00 38.58 4.85
6707 8444 2.076863 CTTAGTGTGCTAACAGTGGGC 58.923 52.381 0.00 0.00 40.30 5.36
6728 8465 7.336679 TGTGCTAATAGTGAATGCATGTAGTTT 59.663 33.333 0.00 0.00 36.04 2.66
6737 8474 6.016860 TGGATTGATGTGCTAATAGTGAATGC 60.017 38.462 0.00 0.00 0.00 3.56
6745 8482 7.172532 GGACGTATTTGGATTGATGTGCTAATA 59.827 37.037 0.00 0.00 0.00 0.98
6779 8516 4.886247 TTACGTATGCAAATGGGCTAAC 57.114 40.909 0.00 0.00 34.04 2.34
6796 8533 4.493545 GCTAATTGTGGACGGATGTTTACG 60.494 45.833 0.00 0.00 0.00 3.18
6797 8534 4.201881 GGCTAATTGTGGACGGATGTTTAC 60.202 45.833 0.00 0.00 0.00 2.01
6798 8535 3.942748 GGCTAATTGTGGACGGATGTTTA 59.057 43.478 0.00 0.00 0.00 2.01
6799 8536 2.752903 GGCTAATTGTGGACGGATGTTT 59.247 45.455 0.00 0.00 0.00 2.83
6800 8537 2.290641 TGGCTAATTGTGGACGGATGTT 60.291 45.455 0.00 0.00 0.00 2.71
6801 8538 1.280710 TGGCTAATTGTGGACGGATGT 59.719 47.619 0.00 0.00 0.00 3.06
6802 8539 2.036958 TGGCTAATTGTGGACGGATG 57.963 50.000 0.00 0.00 0.00 3.51
6803 8540 2.487265 GGATGGCTAATTGTGGACGGAT 60.487 50.000 0.00 0.00 0.00 4.18
6804 8541 1.134220 GGATGGCTAATTGTGGACGGA 60.134 52.381 0.00 0.00 0.00 4.69
6805 8542 1.308998 GGATGGCTAATTGTGGACGG 58.691 55.000 0.00 0.00 0.00 4.79
6806 8543 2.036958 TGGATGGCTAATTGTGGACG 57.963 50.000 0.00 0.00 0.00 4.79
6807 8544 2.099756 GCTTGGATGGCTAATTGTGGAC 59.900 50.000 0.00 0.00 0.00 4.02
6808 8545 2.378038 GCTTGGATGGCTAATTGTGGA 58.622 47.619 0.00 0.00 0.00 4.02
6809 8546 1.410153 GGCTTGGATGGCTAATTGTGG 59.590 52.381 0.00 0.00 0.00 4.17
6810 8547 2.381911 AGGCTTGGATGGCTAATTGTG 58.618 47.619 0.00 0.00 41.20 3.33
6811 8548 2.834638 AGGCTTGGATGGCTAATTGT 57.165 45.000 0.00 0.00 41.20 2.71
6843 8596 7.437748 TGTTCTCCTCTTCTCTTTTACTCAAG 58.562 38.462 0.00 0.00 0.00 3.02
6845 8598 6.778069 TCTGTTCTCCTCTTCTCTTTTACTCA 59.222 38.462 0.00 0.00 0.00 3.41
6852 8605 4.044065 TCTCCTCTGTTCTCCTCTTCTCTT 59.956 45.833 0.00 0.00 0.00 2.85
6966 8719 4.130118 ACAAATTATCCGAGCTAGCCTTG 58.870 43.478 12.13 0.82 0.00 3.61
6968 8721 4.423625 AACAAATTATCCGAGCTAGCCT 57.576 40.909 12.13 0.00 0.00 4.58
6971 8724 8.638565 CAAAACAAAACAAATTATCCGAGCTAG 58.361 33.333 0.00 0.00 0.00 3.42
6976 8729 9.974750 GAAAACAAAACAAAACAAATTATCCGA 57.025 25.926 0.00 0.00 0.00 4.55
6989 8742 9.581099 GATCTAGAAACCAGAAAACAAAACAAA 57.419 29.630 0.00 0.00 0.00 2.83
6991 8744 8.519799 AGATCTAGAAACCAGAAAACAAAACA 57.480 30.769 0.00 0.00 0.00 2.83
7018 8777 4.646572 TGCAATGTGTAACTGGTACATGA 58.353 39.130 9.05 0.00 44.52 3.07
7019 8778 5.565592 ATGCAATGTGTAACTGGTACATG 57.434 39.130 9.05 4.79 44.52 3.21
7038 8797 8.479280 CGCATATTTTTATTTGTGGAACTATGC 58.521 33.333 0.00 0.00 38.04 3.14
7056 8815 7.592533 GTCATGACATTAGAATTGCGCATATTT 59.407 33.333 21.07 5.58 0.00 1.40
7057 8816 7.080099 GTCATGACATTAGAATTGCGCATATT 58.920 34.615 21.07 14.08 0.00 1.28
7063 8822 4.880886 TGGTCATGACATTAGAATTGCG 57.119 40.909 26.47 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.