Multiple sequence alignment - TraesCS1B01G451100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G451100 chr1B 100.000 2897 0 0 1 2897 668910699 668913595 0.000000e+00 5350.0
1 TraesCS1B01G451100 chr1B 79.939 653 109 15 1237 1881 542432372 542431734 7.310000e-126 460.0
2 TraesCS1B01G451100 chr1D 91.947 2049 48 18 706 2673 480516778 480518790 0.000000e+00 2761.0
3 TraesCS1B01G451100 chr1D 92.748 717 44 4 1 711 463053744 463054458 0.000000e+00 1029.0
4 TraesCS1B01G451100 chr1D 96.951 164 5 0 2734 2897 480525097 480525260 2.840000e-70 276.0
5 TraesCS1B01G451100 chr1D 100.000 31 0 0 2685 2715 480518786 480518816 1.120000e-04 58.4
6 TraesCS1B01G451100 chr2A 91.884 1343 46 14 839 2150 182284496 182283186 0.000000e+00 1818.0
7 TraesCS1B01G451100 chr2A 86.364 154 12 6 708 853 182284662 182284510 2.990000e-35 159.0
8 TraesCS1B01G451100 chr3B 96.879 705 20 2 1 705 685255624 685256326 0.000000e+00 1179.0
9 TraesCS1B01G451100 chr3B 96.454 705 22 3 1 705 367123223 367123924 0.000000e+00 1160.0
10 TraesCS1B01G451100 chr3B 92.381 105 8 0 2327 2431 97087742 97087846 1.800000e-32 150.0
11 TraesCS1B01G451100 chr2B 96.879 705 21 1 1 705 663836167 663835464 0.000000e+00 1179.0
12 TraesCS1B01G451100 chr5D 93.617 705 39 2 1 700 494632339 494633042 0.000000e+00 1048.0
13 TraesCS1B01G451100 chr5D 78.116 658 116 22 1237 1883 507835749 507835109 2.710000e-105 392.0
14 TraesCS1B01G451100 chr5D 77.576 660 130 13 1237 1890 507772212 507771565 1.630000e-102 383.0
15 TraesCS1B01G451100 chr7A 92.624 705 45 3 1 700 271725465 271726167 0.000000e+00 1007.0
16 TraesCS1B01G451100 chr3D 91.773 705 52 2 1 700 589507222 589506519 0.000000e+00 976.0
17 TraesCS1B01G451100 chr4D 92.364 681 43 5 1 675 365400544 365401221 0.000000e+00 961.0
18 TraesCS1B01G451100 chr6D 90.960 719 49 6 1 707 472638754 472639468 0.000000e+00 953.0
19 TraesCS1B01G451100 chr6D 78.006 632 113 18 1262 1883 53775001 53774386 9.800000e-100 374.0
20 TraesCS1B01G451100 chr1A 80.640 656 111 12 1237 1887 566564324 566564968 7.210000e-136 494.0
21 TraesCS1B01G451100 chr6B 77.760 634 110 20 1262 1883 117707029 117707643 7.630000e-96 361.0
22 TraesCS1B01G451100 chr6A 78.130 599 107 16 1294 1883 61212108 61212691 2.740000e-95 359.0
23 TraesCS1B01G451100 chr6A 76.829 656 126 20 1238 1883 61400673 61401312 2.140000e-91 346.0
24 TraesCS1B01G451100 chr3A 88.889 99 11 0 2333 2431 69495560 69495462 3.920000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G451100 chr1B 668910699 668913595 2896 False 5350.0 5350 100.0000 1 2897 1 chr1B.!!$F1 2896
1 TraesCS1B01G451100 chr1B 542431734 542432372 638 True 460.0 460 79.9390 1237 1881 1 chr1B.!!$R1 644
2 TraesCS1B01G451100 chr1D 480516778 480518816 2038 False 1409.7 2761 95.9735 706 2715 2 chr1D.!!$F3 2009
3 TraesCS1B01G451100 chr1D 463053744 463054458 714 False 1029.0 1029 92.7480 1 711 1 chr1D.!!$F1 710
4 TraesCS1B01G451100 chr2A 182283186 182284662 1476 True 988.5 1818 89.1240 708 2150 2 chr2A.!!$R1 1442
5 TraesCS1B01G451100 chr3B 685255624 685256326 702 False 1179.0 1179 96.8790 1 705 1 chr3B.!!$F3 704
6 TraesCS1B01G451100 chr3B 367123223 367123924 701 False 1160.0 1160 96.4540 1 705 1 chr3B.!!$F2 704
7 TraesCS1B01G451100 chr2B 663835464 663836167 703 True 1179.0 1179 96.8790 1 705 1 chr2B.!!$R1 704
8 TraesCS1B01G451100 chr5D 494632339 494633042 703 False 1048.0 1048 93.6170 1 700 1 chr5D.!!$F1 699
9 TraesCS1B01G451100 chr5D 507835109 507835749 640 True 392.0 392 78.1160 1237 1883 1 chr5D.!!$R2 646
10 TraesCS1B01G451100 chr5D 507771565 507772212 647 True 383.0 383 77.5760 1237 1890 1 chr5D.!!$R1 653
11 TraesCS1B01G451100 chr7A 271725465 271726167 702 False 1007.0 1007 92.6240 1 700 1 chr7A.!!$F1 699
12 TraesCS1B01G451100 chr3D 589506519 589507222 703 True 976.0 976 91.7730 1 700 1 chr3D.!!$R1 699
13 TraesCS1B01G451100 chr4D 365400544 365401221 677 False 961.0 961 92.3640 1 675 1 chr4D.!!$F1 674
14 TraesCS1B01G451100 chr6D 472638754 472639468 714 False 953.0 953 90.9600 1 707 1 chr6D.!!$F1 706
15 TraesCS1B01G451100 chr6D 53774386 53775001 615 True 374.0 374 78.0060 1262 1883 1 chr6D.!!$R1 621
16 TraesCS1B01G451100 chr1A 566564324 566564968 644 False 494.0 494 80.6400 1237 1887 1 chr1A.!!$F1 650
17 TraesCS1B01G451100 chr6B 117707029 117707643 614 False 361.0 361 77.7600 1262 1883 1 chr6B.!!$F1 621
18 TraesCS1B01G451100 chr6A 61212108 61212691 583 False 359.0 359 78.1300 1294 1883 1 chr6A.!!$F1 589
19 TraesCS1B01G451100 chr6A 61400673 61401312 639 False 346.0 346 76.8290 1238 1883 1 chr6A.!!$F2 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 966 1.153881 GTACACGTCGCCCCTCTTC 60.154 63.158 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2724 2854 0.033366 ATTTTCGTTGTGGCCTTGGC 59.967 50.0 3.32 2.49 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 9.076781 TCTTTGAATTGAACATAGTGAAATCCA 57.923 29.630 0.00 0.00 0.00 3.41
349 358 5.224562 TCAACAATTTTCAACTCGTTCGT 57.775 34.783 0.00 0.00 0.00 3.85
408 417 9.355215 GACGTCGTCAGGAATTCAAATATATAT 57.645 33.333 20.28 0.00 32.09 0.86
558 574 2.504175 AGATGCATAGTACGGTTGGGTT 59.496 45.455 0.00 0.00 0.00 4.11
717 733 1.255667 TTAGTCGCAGGGGTCACTCC 61.256 60.000 0.00 0.00 0.00 3.85
743 759 1.876497 GCGCCCAGAAAATGCCTTGA 61.876 55.000 0.00 0.00 0.00 3.02
855 907 3.004752 ACCAAATCCAGAAATCCTCCG 57.995 47.619 0.00 0.00 0.00 4.63
913 965 2.968206 GTACACGTCGCCCCTCTT 59.032 61.111 0.00 0.00 0.00 2.85
914 966 1.153881 GTACACGTCGCCCCTCTTC 60.154 63.158 0.00 0.00 0.00 2.87
974 1026 4.217159 GCTAGGCCACCGTACCCG 62.217 72.222 5.01 0.00 0.00 5.28
975 1027 2.757099 CTAGGCCACCGTACCCGT 60.757 66.667 5.01 0.00 0.00 5.28
976 1028 1.453745 CTAGGCCACCGTACCCGTA 60.454 63.158 5.01 0.00 0.00 4.02
977 1029 1.728490 CTAGGCCACCGTACCCGTAC 61.728 65.000 5.01 0.00 0.00 3.67
998 1050 4.154347 GGACTCCGGAGCAGCAGG 62.154 72.222 31.56 7.27 0.00 4.85
1011 1063 3.534056 GCAGGCATGGCATCCACC 61.534 66.667 22.64 9.81 35.80 4.61
1141 1193 1.665679 GCAGAATCACCATGGTACGTG 59.334 52.381 19.28 11.78 0.00 4.49
1143 1195 1.014352 GAATCACCATGGTACGTGCC 58.986 55.000 19.28 16.68 0.00 5.01
1144 1196 0.326595 AATCACCATGGTACGTGCCA 59.673 50.000 27.98 27.98 43.48 4.92
1145 1197 0.392461 ATCACCATGGTACGTGCCAC 60.392 55.000 28.37 2.35 41.94 5.01
1204 1279 4.727507 AGAGCTAACGATTGTCTGATGT 57.272 40.909 0.00 0.00 0.00 3.06
1205 1280 4.428209 AGAGCTAACGATTGTCTGATGTG 58.572 43.478 0.00 0.00 0.00 3.21
1908 1990 2.017559 GATCTTAGGCTGGCCGACGT 62.018 60.000 5.93 0.00 41.95 4.34
1945 2039 3.857157 AAACTACTCCCATGTGTGTGT 57.143 42.857 0.00 0.00 0.00 3.72
1946 2040 2.839486 ACTACTCCCATGTGTGTGTG 57.161 50.000 0.00 0.00 0.00 3.82
1947 2041 2.047061 ACTACTCCCATGTGTGTGTGT 58.953 47.619 0.00 0.00 0.00 3.72
1948 2042 2.224281 ACTACTCCCATGTGTGTGTGTG 60.224 50.000 0.00 0.00 0.00 3.82
1949 2043 0.546122 ACTCCCATGTGTGTGTGTGT 59.454 50.000 0.00 0.00 0.00 3.72
1950 2044 0.946528 CTCCCATGTGTGTGTGTGTG 59.053 55.000 0.00 0.00 0.00 3.82
2030 2124 7.435192 CACTTTCTGATGTGTGTCGCTTATATA 59.565 37.037 3.97 0.00 0.00 0.86
2031 2125 8.144478 ACTTTCTGATGTGTGTCGCTTATATAT 58.856 33.333 0.00 0.00 0.00 0.86
2032 2126 8.887036 TTTCTGATGTGTGTCGCTTATATATT 57.113 30.769 0.00 0.00 0.00 1.28
2033 2127 8.887036 TTCTGATGTGTGTCGCTTATATATTT 57.113 30.769 0.00 0.00 0.00 1.40
2034 2128 9.974980 TTCTGATGTGTGTCGCTTATATATTTA 57.025 29.630 0.00 0.00 0.00 1.40
2239 2369 4.742438 TGCTGAAGGATTTGTTAACGTC 57.258 40.909 0.26 0.00 0.00 4.34
2275 2405 2.255316 GTGTGACTTAGCGAGAAGAGC 58.745 52.381 3.98 0.00 0.00 4.09
2280 2410 1.480137 ACTTAGCGAGAAGAGCAGCAT 59.520 47.619 0.00 0.00 37.01 3.79
2281 2411 2.093764 ACTTAGCGAGAAGAGCAGCATT 60.094 45.455 0.00 0.00 37.01 3.56
2282 2412 3.131223 ACTTAGCGAGAAGAGCAGCATTA 59.869 43.478 0.00 0.00 37.01 1.90
2315 2445 6.071447 TGAGCAACAATGGCATGTTAGTAAAT 60.071 34.615 0.00 0.00 41.44 1.40
2323 2453 3.316308 GGCATGTTAGTAAATCTGCAGGG 59.684 47.826 15.13 0.00 30.55 4.45
2339 2469 2.540101 GCAGGGTAATGAGTCGATTTCG 59.460 50.000 0.00 0.00 41.45 3.46
2351 2481 3.131396 GTCGATTTCGGCATGGAGTATT 58.869 45.455 0.00 0.00 44.43 1.89
2431 2561 6.293298 GCTCAGCCAAATGACATCTATGTTAG 60.293 42.308 0.00 0.00 41.95 2.34
2438 2568 7.770433 CCAAATGACATCTATGTTAGAGGACAA 59.230 37.037 3.46 0.00 42.37 3.18
2516 2646 6.803154 AAAAGTCGTCCCTTTATTCAGAAG 57.197 37.500 0.00 0.00 33.62 2.85
2526 2656 4.096984 CCTTTATTCAGAAGGCTCGCAAAT 59.903 41.667 0.00 0.00 37.45 2.32
2575 2705 3.077229 TGTGCAACATTCAAGTTTCCG 57.923 42.857 0.00 0.00 45.67 4.30
2644 2774 7.775053 ATATGTTTCACTTGCTCCCTAAAAA 57.225 32.000 0.00 0.00 0.00 1.94
2671 2801 7.946207 TGGAACAGAAAATTACATAACTTGCA 58.054 30.769 0.00 0.00 0.00 4.08
2672 2802 8.584157 TGGAACAGAAAATTACATAACTTGCAT 58.416 29.630 0.00 0.00 0.00 3.96
2673 2803 8.863049 GGAACAGAAAATTACATAACTTGCATG 58.137 33.333 0.00 0.00 0.00 4.06
2674 2804 9.624697 GAACAGAAAATTACATAACTTGCATGA 57.375 29.630 6.60 0.00 0.00 3.07
2675 2805 9.979578 AACAGAAAATTACATAACTTGCATGAA 57.020 25.926 6.60 0.00 0.00 2.57
2676 2806 9.630098 ACAGAAAATTACATAACTTGCATGAAG 57.370 29.630 6.60 0.00 37.73 3.02
2677 2807 9.844790 CAGAAAATTACATAACTTGCATGAAGA 57.155 29.630 6.60 0.00 35.42 2.87
2680 2810 9.846248 AAAATTACATAACTTGCATGAAGAGAC 57.154 29.630 6.60 0.00 35.42 3.36
2681 2811 6.985188 TTACATAACTTGCATGAAGAGACC 57.015 37.500 6.60 0.00 35.42 3.85
2682 2812 4.910195 ACATAACTTGCATGAAGAGACCA 58.090 39.130 6.60 0.00 35.42 4.02
2683 2813 5.316167 ACATAACTTGCATGAAGAGACCAA 58.684 37.500 6.60 0.00 35.42 3.67
2715 2845 3.252974 AGCAGTTCTAGTCCGATTTGG 57.747 47.619 0.00 0.00 40.09 3.28
2716 2846 2.567615 AGCAGTTCTAGTCCGATTTGGT 59.432 45.455 0.00 0.00 39.52 3.67
2717 2847 2.673368 GCAGTTCTAGTCCGATTTGGTG 59.327 50.000 0.00 0.00 39.52 4.17
2718 2848 3.864921 GCAGTTCTAGTCCGATTTGGTGT 60.865 47.826 0.00 0.00 39.52 4.16
2719 2849 4.315803 CAGTTCTAGTCCGATTTGGTGTT 58.684 43.478 0.00 0.00 39.52 3.32
2720 2850 4.755123 CAGTTCTAGTCCGATTTGGTGTTT 59.245 41.667 0.00 0.00 39.52 2.83
2721 2851 5.238650 CAGTTCTAGTCCGATTTGGTGTTTT 59.761 40.000 0.00 0.00 39.52 2.43
2722 2852 5.826208 AGTTCTAGTCCGATTTGGTGTTTTT 59.174 36.000 0.00 0.00 39.52 1.94
2723 2853 5.682943 TCTAGTCCGATTTGGTGTTTTTG 57.317 39.130 0.00 0.00 39.52 2.44
2724 2854 3.726291 AGTCCGATTTGGTGTTTTTGG 57.274 42.857 0.00 0.00 39.52 3.28
2725 2855 2.131972 GTCCGATTTGGTGTTTTTGGC 58.868 47.619 0.00 0.00 39.52 4.52
2726 2856 1.069358 TCCGATTTGGTGTTTTTGGCC 59.931 47.619 0.00 0.00 39.52 5.36
2727 2857 1.202580 CCGATTTGGTGTTTTTGGCCA 60.203 47.619 0.00 0.00 0.00 5.36
2728 2858 2.555199 CGATTTGGTGTTTTTGGCCAA 58.445 42.857 16.05 16.05 40.14 4.52
2729 2859 2.543430 CGATTTGGTGTTTTTGGCCAAG 59.457 45.455 19.48 0.00 42.38 3.61
2730 2860 2.409948 TTTGGTGTTTTTGGCCAAGG 57.590 45.000 19.48 0.00 42.38 3.61
2731 2861 0.107459 TTGGTGTTTTTGGCCAAGGC 60.107 50.000 19.48 13.01 37.36 4.35
2741 2871 3.124686 GCCAAGGCCACAACGAAA 58.875 55.556 5.01 0.00 34.56 3.46
2742 2872 1.439644 GCCAAGGCCACAACGAAAA 59.560 52.632 5.01 0.00 34.56 2.29
2743 2873 0.033366 GCCAAGGCCACAACGAAAAT 59.967 50.000 5.01 0.00 34.56 1.82
2744 2874 1.271102 GCCAAGGCCACAACGAAAATA 59.729 47.619 5.01 0.00 34.56 1.40
2745 2875 2.288518 GCCAAGGCCACAACGAAAATAA 60.289 45.455 5.01 0.00 34.56 1.40
2746 2876 3.616317 GCCAAGGCCACAACGAAAATAAT 60.616 43.478 5.01 0.00 34.56 1.28
2747 2877 4.173256 CCAAGGCCACAACGAAAATAATC 58.827 43.478 5.01 0.00 0.00 1.75
2748 2878 4.082245 CCAAGGCCACAACGAAAATAATCT 60.082 41.667 5.01 0.00 0.00 2.40
2749 2879 5.124776 CCAAGGCCACAACGAAAATAATCTA 59.875 40.000 5.01 0.00 0.00 1.98
2750 2880 6.349777 CCAAGGCCACAACGAAAATAATCTAA 60.350 38.462 5.01 0.00 0.00 2.10
2751 2881 7.257722 CAAGGCCACAACGAAAATAATCTAAT 58.742 34.615 5.01 0.00 0.00 1.73
2752 2882 8.402472 CAAGGCCACAACGAAAATAATCTAATA 58.598 33.333 5.01 0.00 0.00 0.98
2753 2883 8.691661 AGGCCACAACGAAAATAATCTAATAT 57.308 30.769 5.01 0.00 0.00 1.28
2754 2884 8.784043 AGGCCACAACGAAAATAATCTAATATC 58.216 33.333 5.01 0.00 0.00 1.63
2755 2885 8.784043 GGCCACAACGAAAATAATCTAATATCT 58.216 33.333 0.00 0.00 0.00 1.98
2756 2886 9.813080 GCCACAACGAAAATAATCTAATATCTC 57.187 33.333 0.00 0.00 0.00 2.75
2779 2909 9.374838 TCTCTAAATAAAACTCGAATTGGTACC 57.625 33.333 4.43 4.43 0.00 3.34
2780 2910 9.158233 CTCTAAATAAAACTCGAATTGGTACCA 57.842 33.333 11.60 11.60 0.00 3.25
2781 2911 9.504708 TCTAAATAAAACTCGAATTGGTACCAA 57.495 29.630 28.95 28.95 40.47 3.67
2784 2914 9.634163 AAATAAAACTCGAATTGGTACCAAATC 57.366 29.630 30.31 28.24 39.55 2.17
2790 2920 4.616181 GAATTGGTACCAAATCGTCCAG 57.384 45.455 30.31 0.00 39.55 3.86
2791 2921 3.992943 ATTGGTACCAAATCGTCCAGA 57.007 42.857 30.31 4.64 39.55 3.86
2792 2922 3.992943 TTGGTACCAAATCGTCCAGAT 57.007 42.857 25.19 0.00 42.43 2.90
2793 2923 3.536956 TGGTACCAAATCGTCCAGATC 57.463 47.619 13.60 0.00 38.98 2.75
2794 2924 3.104512 TGGTACCAAATCGTCCAGATCT 58.895 45.455 13.60 0.00 38.98 2.75
2795 2925 3.132289 TGGTACCAAATCGTCCAGATCTC 59.868 47.826 13.60 0.00 38.98 2.75
2796 2926 3.132289 GGTACCAAATCGTCCAGATCTCA 59.868 47.826 7.15 0.00 38.98 3.27
2797 2927 3.533606 ACCAAATCGTCCAGATCTCAG 57.466 47.619 0.00 0.00 38.98 3.35
2798 2928 2.169352 ACCAAATCGTCCAGATCTCAGG 59.831 50.000 0.00 0.00 38.98 3.86
2799 2929 2.432146 CCAAATCGTCCAGATCTCAGGA 59.568 50.000 0.00 0.00 38.98 3.86
2800 2930 3.118629 CCAAATCGTCCAGATCTCAGGAA 60.119 47.826 3.42 0.00 38.98 3.36
2801 2931 4.444022 CCAAATCGTCCAGATCTCAGGAAT 60.444 45.833 3.42 0.00 38.98 3.01
2802 2932 4.333913 AATCGTCCAGATCTCAGGAATG 57.666 45.455 3.42 0.85 38.98 2.67
2803 2933 2.034878 TCGTCCAGATCTCAGGAATGG 58.965 52.381 3.42 0.00 33.14 3.16
2804 2934 2.034878 CGTCCAGATCTCAGGAATGGA 58.965 52.381 3.42 0.00 38.35 3.41
2805 2935 2.632028 CGTCCAGATCTCAGGAATGGAT 59.368 50.000 3.42 0.00 40.82 3.41
2806 2936 3.305950 CGTCCAGATCTCAGGAATGGATC 60.306 52.174 3.42 0.00 40.82 3.36
2807 2937 3.903090 GTCCAGATCTCAGGAATGGATCT 59.097 47.826 3.42 0.00 44.55 2.75
2808 2938 5.083122 GTCCAGATCTCAGGAATGGATCTA 58.917 45.833 3.42 0.00 42.65 1.98
2809 2939 5.047377 GTCCAGATCTCAGGAATGGATCTAC 60.047 48.000 3.42 0.00 42.65 2.59
2810 2940 4.837298 CCAGATCTCAGGAATGGATCTACA 59.163 45.833 0.00 0.00 42.65 2.74
2811 2941 5.484644 CCAGATCTCAGGAATGGATCTACAT 59.515 44.000 0.00 0.00 42.65 2.29
2812 2942 6.351202 CCAGATCTCAGGAATGGATCTACATC 60.351 46.154 0.00 0.00 42.65 3.06
2813 2943 6.210984 CAGATCTCAGGAATGGATCTACATCA 59.789 42.308 0.00 0.00 42.65 3.07
2814 2944 6.961131 AGATCTCAGGAATGGATCTACATCAT 59.039 38.462 0.00 0.00 42.70 2.45
2815 2945 6.602410 TCTCAGGAATGGATCTACATCATC 57.398 41.667 0.00 0.00 0.00 2.92
2816 2946 6.080009 TCTCAGGAATGGATCTACATCATCA 58.920 40.000 0.00 0.00 0.00 3.07
2817 2947 6.210984 TCTCAGGAATGGATCTACATCATCAG 59.789 42.308 0.00 0.00 0.00 2.90
2818 2948 5.842874 TCAGGAATGGATCTACATCATCAGT 59.157 40.000 0.00 0.00 0.00 3.41
2819 2949 6.014755 TCAGGAATGGATCTACATCATCAGTC 60.015 42.308 0.00 0.00 0.00 3.51
2820 2950 5.842874 AGGAATGGATCTACATCATCAGTCA 59.157 40.000 0.00 0.00 0.00 3.41
2821 2951 5.931146 GGAATGGATCTACATCATCAGTCAC 59.069 44.000 0.00 0.00 0.00 3.67
2822 2952 4.574599 TGGATCTACATCATCAGTCACG 57.425 45.455 0.00 0.00 0.00 4.35
2823 2953 3.243535 TGGATCTACATCATCAGTCACGC 60.244 47.826 0.00 0.00 0.00 5.34
2824 2954 2.871182 TCTACATCATCAGTCACGCC 57.129 50.000 0.00 0.00 0.00 5.68
2825 2955 2.099405 TCTACATCATCAGTCACGCCA 58.901 47.619 0.00 0.00 0.00 5.69
2826 2956 2.099756 TCTACATCATCAGTCACGCCAG 59.900 50.000 0.00 0.00 0.00 4.85
2827 2957 0.742281 ACATCATCAGTCACGCCAGC 60.742 55.000 0.00 0.00 0.00 4.85
2828 2958 0.461516 CATCATCAGTCACGCCAGCT 60.462 55.000 0.00 0.00 0.00 4.24
2829 2959 0.251354 ATCATCAGTCACGCCAGCTT 59.749 50.000 0.00 0.00 0.00 3.74
2830 2960 0.671472 TCATCAGTCACGCCAGCTTG 60.671 55.000 0.00 0.00 0.00 4.01
2831 2961 2.037136 ATCAGTCACGCCAGCTTGC 61.037 57.895 0.00 0.00 0.00 4.01
2832 2962 2.460662 ATCAGTCACGCCAGCTTGCT 62.461 55.000 8.31 0.00 0.00 3.91
2833 2963 2.667536 AGTCACGCCAGCTTGCTG 60.668 61.111 15.02 15.02 0.00 4.41
2834 2964 4.395583 GTCACGCCAGCTTGCTGC 62.396 66.667 16.37 11.01 43.29 5.25
2846 2976 3.582714 GCTTGCTGCTTGTCCTAAAAT 57.417 42.857 0.00 0.00 38.95 1.82
2847 2977 3.917988 GCTTGCTGCTTGTCCTAAAATT 58.082 40.909 0.00 0.00 38.95 1.82
2848 2978 3.676646 GCTTGCTGCTTGTCCTAAAATTG 59.323 43.478 0.00 0.00 38.95 2.32
2849 2979 3.302365 TGCTGCTTGTCCTAAAATTGC 57.698 42.857 0.00 0.00 0.00 3.56
2850 2980 2.627221 TGCTGCTTGTCCTAAAATTGCA 59.373 40.909 0.00 0.00 0.00 4.08
2851 2981 3.248266 GCTGCTTGTCCTAAAATTGCAG 58.752 45.455 0.00 0.00 46.11 4.41
2852 2982 3.841643 CTGCTTGTCCTAAAATTGCAGG 58.158 45.455 0.00 0.91 41.59 4.85
2853 2983 2.029110 TGCTTGTCCTAAAATTGCAGGC 60.029 45.455 1.42 0.00 33.64 4.85
2854 2984 2.029110 GCTTGTCCTAAAATTGCAGGCA 60.029 45.455 0.00 0.00 33.32 4.75
2855 2985 3.554752 GCTTGTCCTAAAATTGCAGGCAA 60.555 43.478 9.38 9.38 40.47 4.52
2856 2986 3.940209 TGTCCTAAAATTGCAGGCAAG 57.060 42.857 12.66 0.00 39.47 4.01
2857 2987 2.029110 TGTCCTAAAATTGCAGGCAAGC 60.029 45.455 12.66 0.00 39.47 4.01
2858 2988 2.029110 GTCCTAAAATTGCAGGCAAGCA 60.029 45.455 12.66 0.22 43.99 3.91
2866 2996 2.507339 TGCAGGCAAGCAAAACTTAC 57.493 45.000 1.98 0.00 42.46 2.34
2867 2997 2.031120 TGCAGGCAAGCAAAACTTACT 58.969 42.857 1.98 0.00 42.46 2.24
2868 2998 2.223782 TGCAGGCAAGCAAAACTTACTG 60.224 45.455 1.98 0.00 42.46 2.74
2869 2999 2.034558 GCAGGCAAGCAAAACTTACTGA 59.965 45.455 11.30 0.00 41.56 3.41
2870 3000 3.305608 GCAGGCAAGCAAAACTTACTGAT 60.306 43.478 11.30 0.00 41.56 2.90
2871 3001 4.082787 GCAGGCAAGCAAAACTTACTGATA 60.083 41.667 11.30 0.00 41.56 2.15
2872 3002 5.634896 CAGGCAAGCAAAACTTACTGATAG 58.365 41.667 0.00 0.00 41.56 2.08
2873 3003 5.182001 CAGGCAAGCAAAACTTACTGATAGT 59.818 40.000 0.00 0.00 41.56 2.12
2874 3004 5.770162 AGGCAAGCAAAACTTACTGATAGTT 59.230 36.000 0.00 0.00 36.04 2.24
2875 3005 6.940298 AGGCAAGCAAAACTTACTGATAGTTA 59.060 34.615 0.00 0.00 36.04 2.24
2876 3006 7.611855 AGGCAAGCAAAACTTACTGATAGTTAT 59.388 33.333 0.00 0.00 36.04 1.89
2877 3007 8.889717 GGCAAGCAAAACTTACTGATAGTTATA 58.110 33.333 0.00 0.00 36.04 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 179 9.434420 TTTGACAAAATCTGTTTCACTCATTTT 57.566 25.926 0.00 0.00 38.84 1.82
217 218 7.504924 ACTTATTTCAGTCATTCCGAAACAA 57.495 32.000 0.00 0.00 31.87 2.83
327 336 5.224562 ACGAACGAGTTGAAAATTGTTGA 57.775 34.783 1.07 0.00 0.00 3.18
558 574 7.614974 TGGTCCATTAGATCAAATCAATGTCAA 59.385 33.333 0.00 0.00 30.60 3.18
717 733 1.447317 ATTTTCTGGGCGCGCCTATG 61.447 55.000 45.23 33.32 36.10 2.23
743 759 3.119673 CGCAGAGTTATCTATCTCGGCAT 60.120 47.826 15.72 0.00 46.45 4.40
864 916 1.329599 ACAAGTTTTTCGTGGAGACGC 59.670 47.619 0.00 0.00 45.68 5.19
874 926 7.851963 TGTACGTATTTGTAGCACAAGTTTTTC 59.148 33.333 0.00 0.00 39.53 2.29
913 965 2.038952 CTCAGTGAGTGGTGGGAATTGA 59.961 50.000 12.28 0.00 0.00 2.57
914 966 2.038952 TCTCAGTGAGTGGTGGGAATTG 59.961 50.000 19.53 0.00 0.00 2.32
973 1025 1.770085 GCTCCGGAGTCCGTAGTACG 61.770 65.000 31.43 15.86 46.80 3.67
974 1026 0.745845 TGCTCCGGAGTCCGTAGTAC 60.746 60.000 31.43 12.22 46.80 2.73
975 1027 0.463295 CTGCTCCGGAGTCCGTAGTA 60.463 60.000 31.43 21.38 46.80 1.82
976 1028 1.749638 CTGCTCCGGAGTCCGTAGT 60.750 63.158 31.43 0.00 46.80 2.73
977 1029 3.111939 CTGCTCCGGAGTCCGTAG 58.888 66.667 31.43 24.13 46.80 3.51
1141 1193 0.811281 GGTTAGTTCATGGCAGTGGC 59.189 55.000 10.30 10.30 40.13 5.01
1143 1195 1.812571 GGTGGTTAGTTCATGGCAGTG 59.187 52.381 0.00 0.00 0.00 3.66
1144 1196 1.423541 TGGTGGTTAGTTCATGGCAGT 59.576 47.619 0.00 0.00 0.00 4.40
1145 1197 1.812571 GTGGTGGTTAGTTCATGGCAG 59.187 52.381 0.00 0.00 0.00 4.85
1908 1990 7.040961 GGAGTAGTTTACACTTTACAATGGCAA 60.041 37.037 0.00 0.00 34.06 4.52
1947 2041 6.656649 CGACCATTCGTTGCTATTTGCACA 62.657 45.833 0.00 0.00 43.54 4.57
1948 2042 4.264958 CGACCATTCGTTGCTATTTGCAC 61.265 47.826 0.00 0.00 43.54 4.57
1949 2043 2.159585 CGACCATTCGTTGCTATTTGCA 60.160 45.455 0.00 0.00 44.23 4.08
1950 2044 2.095213 TCGACCATTCGTTGCTATTTGC 59.905 45.455 0.00 0.00 46.01 3.68
2036 2130 1.649664 AGAGCTAAGCACATCGCAAG 58.350 50.000 0.00 0.00 46.13 4.01
2215 2345 4.518970 ACGTTAACAAATCCTTCAGCATGT 59.481 37.500 6.39 0.00 37.40 3.21
2239 2369 3.928992 GTCACACACAGTGTCATCCATAG 59.071 47.826 2.14 0.00 43.92 2.23
2286 2416 0.892755 ATGCCATTGTTGCTCACCTG 59.107 50.000 0.00 0.00 0.00 4.00
2300 2430 3.947196 CCTGCAGATTTACTAACATGCCA 59.053 43.478 17.39 0.00 32.77 4.92
2315 2445 1.847328 TCGACTCATTACCCTGCAGA 58.153 50.000 17.39 0.00 0.00 4.26
2323 2453 3.059597 CCATGCCGAAATCGACTCATTAC 60.060 47.826 4.04 0.00 43.02 1.89
2339 2469 5.183140 AGTTTACAACACAATACTCCATGCC 59.817 40.000 0.00 0.00 0.00 4.40
2351 2481 8.341903 CACTATCAATCACAAGTTTACAACACA 58.658 33.333 0.00 0.00 0.00 3.72
2411 2541 6.203723 GTCCTCTAACATAGATGTCATTTGGC 59.796 42.308 0.00 0.00 40.80 4.52
2431 2561 8.375506 TGTATGTATGAATATTCCCTTGTCCTC 58.624 37.037 12.90 0.00 0.00 3.71
2438 2568 9.386122 AGTCTTCTGTATGTATGAATATTCCCT 57.614 33.333 12.90 3.24 0.00 4.20
2516 2646 2.726241 GAGTGAAAAACATTTGCGAGCC 59.274 45.455 0.00 0.00 0.00 4.70
2526 2656 6.932400 ACTTGATGTATACCGAGTGAAAAACA 59.068 34.615 0.00 0.00 0.00 2.83
2565 2695 2.038426 TCAGGCTTCATCGGAAACTTGA 59.962 45.455 0.00 0.00 34.18 3.02
2575 2705 9.202273 CACTAGATTTACTTATCAGGCTTCATC 57.798 37.037 0.00 0.00 0.00 2.92
2644 2774 9.423061 GCAAGTTATGTAATTTTCTGTTCCATT 57.577 29.630 0.00 0.00 0.00 3.16
2645 2775 8.584157 TGCAAGTTATGTAATTTTCTGTTCCAT 58.416 29.630 0.00 0.00 0.00 3.41
2668 2798 2.203470 TGCATTGGTCTCTTCATGCA 57.797 45.000 1.57 1.57 41.91 3.96
2669 2799 4.132336 TCTATGCATTGGTCTCTTCATGC 58.868 43.478 3.54 0.00 35.77 4.06
2670 2800 5.995897 TGATCTATGCATTGGTCTCTTCATG 59.004 40.000 19.82 0.00 0.00 3.07
2671 2801 6.183810 TGATCTATGCATTGGTCTCTTCAT 57.816 37.500 19.82 0.00 0.00 2.57
2672 2802 5.619132 TGATCTATGCATTGGTCTCTTCA 57.381 39.130 19.82 0.01 0.00 3.02
2673 2803 5.049543 GCTTGATCTATGCATTGGTCTCTTC 60.050 44.000 19.82 5.66 0.00 2.87
2674 2804 4.820716 GCTTGATCTATGCATTGGTCTCTT 59.179 41.667 19.82 0.00 0.00 2.85
2675 2805 4.141551 TGCTTGATCTATGCATTGGTCTCT 60.142 41.667 19.82 0.00 34.84 3.10
2676 2806 4.132336 TGCTTGATCTATGCATTGGTCTC 58.868 43.478 19.82 10.89 34.84 3.36
2677 2807 4.135306 CTGCTTGATCTATGCATTGGTCT 58.865 43.478 19.82 1.52 38.58 3.85
2678 2808 3.881688 ACTGCTTGATCTATGCATTGGTC 59.118 43.478 13.67 13.67 38.58 4.02
2679 2809 3.894759 ACTGCTTGATCTATGCATTGGT 58.105 40.909 3.54 0.00 38.58 3.67
2680 2810 4.579340 AGAACTGCTTGATCTATGCATTGG 59.421 41.667 3.54 0.00 38.58 3.16
2681 2811 5.752892 AGAACTGCTTGATCTATGCATTG 57.247 39.130 3.54 2.26 38.58 2.82
2682 2812 6.590068 ACTAGAACTGCTTGATCTATGCATT 58.410 36.000 3.54 0.00 38.58 3.56
2683 2813 6.172136 ACTAGAACTGCTTGATCTATGCAT 57.828 37.500 3.79 3.79 38.58 3.96
2715 2845 0.813610 GTGGCCTTGGCCAAAAACAC 60.814 55.000 32.13 21.86 41.98 3.32
2716 2846 1.267574 TGTGGCCTTGGCCAAAAACA 61.268 50.000 32.13 22.89 41.98 2.83
2717 2847 0.107459 TTGTGGCCTTGGCCAAAAAC 60.107 50.000 32.13 20.73 41.98 2.43
2718 2848 0.107459 GTTGTGGCCTTGGCCAAAAA 60.107 50.000 31.28 25.21 38.63 1.94
2719 2849 1.524482 GTTGTGGCCTTGGCCAAAA 59.476 52.632 32.13 29.66 41.98 2.44
2720 2850 2.790791 CGTTGTGGCCTTGGCCAAA 61.791 57.895 32.13 25.80 41.98 3.28
2721 2851 3.222855 CGTTGTGGCCTTGGCCAA 61.223 61.111 32.13 19.25 41.98 4.52
2722 2852 3.723097 TTCGTTGTGGCCTTGGCCA 62.723 57.895 27.73 27.73 37.55 5.36
2723 2853 2.022240 TTTTCGTTGTGGCCTTGGCC 62.022 55.000 22.91 22.91 0.00 5.36
2724 2854 0.033366 ATTTTCGTTGTGGCCTTGGC 59.967 50.000 3.32 2.49 0.00 4.52
2725 2855 3.651803 TTATTTTCGTTGTGGCCTTGG 57.348 42.857 3.32 0.00 0.00 3.61
2726 2856 5.059404 AGATTATTTTCGTTGTGGCCTTG 57.941 39.130 3.32 0.00 0.00 3.61
2727 2857 6.827586 TTAGATTATTTTCGTTGTGGCCTT 57.172 33.333 3.32 0.00 0.00 4.35
2728 2858 8.691661 ATATTAGATTATTTTCGTTGTGGCCT 57.308 30.769 3.32 0.00 0.00 5.19
2729 2859 8.784043 AGATATTAGATTATTTTCGTTGTGGCC 58.216 33.333 0.00 0.00 0.00 5.36
2730 2860 9.813080 GAGATATTAGATTATTTTCGTTGTGGC 57.187 33.333 0.00 0.00 0.00 5.01
2753 2883 9.374838 GGTACCAATTCGAGTTTTATTTAGAGA 57.625 33.333 7.15 0.00 0.00 3.10
2754 2884 9.158233 TGGTACCAATTCGAGTTTTATTTAGAG 57.842 33.333 13.60 0.00 0.00 2.43
2755 2885 9.504708 TTGGTACCAATTCGAGTTTTATTTAGA 57.495 29.630 23.69 0.00 0.00 2.10
2758 2888 9.634163 GATTTGGTACCAATTCGAGTTTTATTT 57.366 29.630 27.57 0.00 35.70 1.40
2769 2899 4.258543 TCTGGACGATTTGGTACCAATTC 58.741 43.478 28.29 28.29 35.70 2.17
2770 2900 4.295141 TCTGGACGATTTGGTACCAATT 57.705 40.909 27.57 23.25 35.70 2.32
2771 2901 3.992943 TCTGGACGATTTGGTACCAAT 57.007 42.857 27.57 17.13 35.70 3.16
2772 2902 3.517901 AGATCTGGACGATTTGGTACCAA 59.482 43.478 23.69 23.69 30.84 3.67
2773 2903 3.104512 AGATCTGGACGATTTGGTACCA 58.895 45.455 11.60 11.60 30.84 3.25
2774 2904 3.132289 TGAGATCTGGACGATTTGGTACC 59.868 47.826 4.43 4.43 30.84 3.34
2775 2905 4.363999 CTGAGATCTGGACGATTTGGTAC 58.636 47.826 0.00 0.00 30.84 3.34
2776 2906 3.384789 CCTGAGATCTGGACGATTTGGTA 59.615 47.826 0.00 0.00 37.15 3.25
2777 2907 2.169352 CCTGAGATCTGGACGATTTGGT 59.831 50.000 0.00 0.00 37.15 3.67
2778 2908 2.432146 TCCTGAGATCTGGACGATTTGG 59.568 50.000 0.00 0.00 38.77 3.28
2779 2909 3.808466 TCCTGAGATCTGGACGATTTG 57.192 47.619 0.00 0.00 38.77 2.32
2780 2910 4.444022 CCATTCCTGAGATCTGGACGATTT 60.444 45.833 0.00 0.00 42.55 2.17
2781 2911 3.070734 CCATTCCTGAGATCTGGACGATT 59.929 47.826 0.00 0.00 42.55 3.34
2782 2912 2.632028 CCATTCCTGAGATCTGGACGAT 59.368 50.000 0.00 0.00 42.55 3.73
2783 2913 2.034878 CCATTCCTGAGATCTGGACGA 58.965 52.381 0.00 0.00 42.55 4.20
2784 2914 2.034878 TCCATTCCTGAGATCTGGACG 58.965 52.381 0.00 3.41 42.55 4.79
2785 2915 3.903090 AGATCCATTCCTGAGATCTGGAC 59.097 47.826 0.00 0.00 43.90 4.02
2786 2916 4.210611 AGATCCATTCCTGAGATCTGGA 57.789 45.455 0.00 0.00 43.90 3.86
2787 2917 4.837298 TGTAGATCCATTCCTGAGATCTGG 59.163 45.833 0.00 0.00 44.90 3.86
2788 2918 6.210984 TGATGTAGATCCATTCCTGAGATCTG 59.789 42.308 0.00 0.00 44.90 2.90
2789 2919 6.321321 TGATGTAGATCCATTCCTGAGATCT 58.679 40.000 0.00 0.00 46.46 2.75
2790 2920 6.602410 TGATGTAGATCCATTCCTGAGATC 57.398 41.667 0.00 0.00 37.31 2.75
2791 2921 6.729569 TGATGATGTAGATCCATTCCTGAGAT 59.270 38.462 0.00 0.00 0.00 2.75
2792 2922 6.080009 TGATGATGTAGATCCATTCCTGAGA 58.920 40.000 0.00 0.00 0.00 3.27
2793 2923 6.014413 ACTGATGATGTAGATCCATTCCTGAG 60.014 42.308 0.00 0.00 0.00 3.35
2794 2924 5.842874 ACTGATGATGTAGATCCATTCCTGA 59.157 40.000 0.00 0.00 0.00 3.86
2795 2925 6.111669 ACTGATGATGTAGATCCATTCCTG 57.888 41.667 0.00 0.00 0.00 3.86
2796 2926 5.842874 TGACTGATGATGTAGATCCATTCCT 59.157 40.000 0.00 0.00 0.00 3.36
2797 2927 5.931146 GTGACTGATGATGTAGATCCATTCC 59.069 44.000 0.00 0.00 0.00 3.01
2798 2928 5.632764 CGTGACTGATGATGTAGATCCATTC 59.367 44.000 0.00 0.00 0.00 2.67
2799 2929 5.536260 CGTGACTGATGATGTAGATCCATT 58.464 41.667 0.00 0.00 0.00 3.16
2800 2930 4.560311 GCGTGACTGATGATGTAGATCCAT 60.560 45.833 0.00 0.00 0.00 3.41
2801 2931 3.243535 GCGTGACTGATGATGTAGATCCA 60.244 47.826 0.00 0.00 0.00 3.41
2802 2932 3.312828 GCGTGACTGATGATGTAGATCC 58.687 50.000 0.00 0.00 0.00 3.36
2803 2933 3.243535 TGGCGTGACTGATGATGTAGATC 60.244 47.826 0.00 0.00 0.00 2.75
2804 2934 2.695147 TGGCGTGACTGATGATGTAGAT 59.305 45.455 0.00 0.00 0.00 1.98
2805 2935 2.099405 TGGCGTGACTGATGATGTAGA 58.901 47.619 0.00 0.00 0.00 2.59
2806 2936 2.467838 CTGGCGTGACTGATGATGTAG 58.532 52.381 0.00 0.00 0.00 2.74
2807 2937 1.471501 GCTGGCGTGACTGATGATGTA 60.472 52.381 0.00 0.00 0.00 2.29
2808 2938 0.742281 GCTGGCGTGACTGATGATGT 60.742 55.000 0.00 0.00 0.00 3.06
2809 2939 0.461516 AGCTGGCGTGACTGATGATG 60.462 55.000 0.00 0.00 0.00 3.07
2810 2940 0.251354 AAGCTGGCGTGACTGATGAT 59.749 50.000 0.00 0.00 0.00 2.45
2811 2941 0.671472 CAAGCTGGCGTGACTGATGA 60.671 55.000 2.53 0.00 0.00 2.92
2812 2942 1.792301 CAAGCTGGCGTGACTGATG 59.208 57.895 2.53 0.00 0.00 3.07
2813 2943 2.037136 GCAAGCTGGCGTGACTGAT 61.037 57.895 12.21 0.00 0.00 2.90
2814 2944 2.666190 GCAAGCTGGCGTGACTGA 60.666 61.111 12.21 0.00 0.00 3.41
2815 2945 2.667536 AGCAAGCTGGCGTGACTG 60.668 61.111 7.63 0.00 39.27 3.51
2816 2946 2.667536 CAGCAAGCTGGCGTGACT 60.668 61.111 14.10 6.25 40.17 3.41
2817 2947 4.395583 GCAGCAAGCTGGCGTGAC 62.396 66.667 22.20 2.09 43.77 3.67
2826 2956 3.582714 ATTTTAGGACAAGCAGCAAGC 57.417 42.857 0.00 0.00 46.19 4.01
2827 2957 3.676646 GCAATTTTAGGACAAGCAGCAAG 59.323 43.478 0.00 0.00 0.00 4.01
2828 2958 3.069300 TGCAATTTTAGGACAAGCAGCAA 59.931 39.130 0.00 0.00 0.00 3.91
2829 2959 2.627221 TGCAATTTTAGGACAAGCAGCA 59.373 40.909 0.00 0.00 0.00 4.41
2830 2960 3.248266 CTGCAATTTTAGGACAAGCAGC 58.752 45.455 0.00 0.00 41.03 5.25
2831 2961 3.841643 CCTGCAATTTTAGGACAAGCAG 58.158 45.455 0.00 0.00 45.44 4.24
2832 2962 2.029110 GCCTGCAATTTTAGGACAAGCA 60.029 45.455 8.59 0.00 36.11 3.91
2833 2963 2.029110 TGCCTGCAATTTTAGGACAAGC 60.029 45.455 8.59 0.00 36.11 4.01
2834 2964 3.940209 TGCCTGCAATTTTAGGACAAG 57.060 42.857 8.59 0.00 36.11 3.16
2835 2965 3.554752 GCTTGCCTGCAATTTTAGGACAA 60.555 43.478 4.84 10.04 36.11 3.18
2836 2966 2.029110 GCTTGCCTGCAATTTTAGGACA 60.029 45.455 4.84 4.15 36.11 4.02
2837 2967 2.029110 TGCTTGCCTGCAATTTTAGGAC 60.029 45.455 4.84 2.03 40.29 3.85
2838 2968 2.246469 TGCTTGCCTGCAATTTTAGGA 58.754 42.857 4.84 0.00 40.29 2.94
2839 2969 2.747396 TGCTTGCCTGCAATTTTAGG 57.253 45.000 4.84 1.15 40.29 2.69
2847 2977 2.031120 AGTAAGTTTTGCTTGCCTGCA 58.969 42.857 0.00 0.00 40.11 4.41
2848 2978 2.034558 TCAGTAAGTTTTGCTTGCCTGC 59.965 45.455 0.00 0.00 40.11 4.85
2849 2979 3.988379 TCAGTAAGTTTTGCTTGCCTG 57.012 42.857 0.00 0.00 40.11 4.85
2850 2980 5.316987 ACTATCAGTAAGTTTTGCTTGCCT 58.683 37.500 0.00 0.00 40.11 4.75
2851 2981 5.629079 ACTATCAGTAAGTTTTGCTTGCC 57.371 39.130 0.00 0.00 40.11 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.