Multiple sequence alignment - TraesCS1B01G450800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G450800 chr1B 100.000 2255 0 0 1 2255 668806977 668804723 0.000000e+00 4165
1 TraesCS1B01G450800 chr1B 98.963 2122 22 0 1 2122 672477345 672479466 0.000000e+00 3797
2 TraesCS1B01G450800 chr1B 98.775 2123 24 2 1 2122 638702482 638700361 0.000000e+00 3775
3 TraesCS1B01G450800 chr1D 99.434 2122 11 1 1 2122 141314951 141312831 0.000000e+00 3851
4 TraesCS1B01G450800 chr7B 99.293 2123 14 1 1 2122 644465627 644467749 0.000000e+00 3836
5 TraesCS1B01G450800 chr7B 91.971 137 8 3 2120 2254 109935625 109935760 2.960000e-44 189
6 TraesCS1B01G450800 chr3A 99.246 2122 16 0 1 2122 633109438 633111559 0.000000e+00 3831
7 TraesCS1B01G450800 chr7A 99.152 2122 18 0 1 2122 60150103 60147982 0.000000e+00 3819
8 TraesCS1B01G450800 chr6B 98.869 2122 24 0 1 2122 306997806 306995685 0.000000e+00 3786
9 TraesCS1B01G450800 chr6B 95.122 123 5 1 2110 2232 128924766 128924887 2.290000e-45 193
10 TraesCS1B01G450800 chr6B 93.846 130 5 2 2106 2233 623441372 623441500 2.290000e-45 193
11 TraesCS1B01G450800 chr4B 98.869 2122 23 1 1 2122 209079333 209077213 0.000000e+00 3784
12 TraesCS1B01G450800 chr2B 98.398 2123 28 3 1 2122 391114652 391112535 0.000000e+00 3727
13 TraesCS1B01G450800 chr3B 98.230 113 2 0 2120 2232 659785854 659785966 4.910000e-47 198
14 TraesCS1B01G450800 chr5D 95.122 123 5 1 2110 2232 420228162 420228283 2.290000e-45 193
15 TraesCS1B01G450800 chr3D 94.444 126 6 1 2108 2233 346837568 346837444 2.290000e-45 193
16 TraesCS1B01G450800 chr4D 94.400 125 6 1 2108 2232 1403134 1403011 8.220000e-45 191
17 TraesCS1B01G450800 chr4D 95.082 122 5 1 2113 2234 234179260 234179140 8.220000e-45 191
18 TraesCS1B01G450800 chr5B 94.355 124 6 1 2112 2235 70795774 70795652 2.960000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G450800 chr1B 668804723 668806977 2254 True 4165 4165 100.000 1 2255 1 chr1B.!!$R2 2254
1 TraesCS1B01G450800 chr1B 672477345 672479466 2121 False 3797 3797 98.963 1 2122 1 chr1B.!!$F1 2121
2 TraesCS1B01G450800 chr1B 638700361 638702482 2121 True 3775 3775 98.775 1 2122 1 chr1B.!!$R1 2121
3 TraesCS1B01G450800 chr1D 141312831 141314951 2120 True 3851 3851 99.434 1 2122 1 chr1D.!!$R1 2121
4 TraesCS1B01G450800 chr7B 644465627 644467749 2122 False 3836 3836 99.293 1 2122 1 chr7B.!!$F2 2121
5 TraesCS1B01G450800 chr3A 633109438 633111559 2121 False 3831 3831 99.246 1 2122 1 chr3A.!!$F1 2121
6 TraesCS1B01G450800 chr7A 60147982 60150103 2121 True 3819 3819 99.152 1 2122 1 chr7A.!!$R1 2121
7 TraesCS1B01G450800 chr6B 306995685 306997806 2121 True 3786 3786 98.869 1 2122 1 chr6B.!!$R1 2121
8 TraesCS1B01G450800 chr4B 209077213 209079333 2120 True 3784 3784 98.869 1 2122 1 chr4B.!!$R1 2121
9 TraesCS1B01G450800 chr2B 391112535 391114652 2117 True 3727 3727 98.398 1 2122 1 chr2B.!!$R1 2121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 924 2.610438 ATTTCATTGCTGTGGGTCCT 57.39 45.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2204 0.030369 CCGGAAATACTCGTCGGAGG 59.97 60.0 0.0 0.0 44.93 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 264 4.889409 AGCAAAAAGAGTGAAATGAGGACA 59.111 37.500 0.00 0.00 0.00 4.02
723 724 4.973168 TCATTCAACTAAAGCTGTCAGGT 58.027 39.130 0.00 0.00 0.00 4.00
922 924 2.610438 ATTTCATTGCTGTGGGTCCT 57.390 45.000 0.00 0.00 0.00 3.85
1455 1457 9.083422 CCTTCTACTATCAACCAGATGAGATAA 57.917 37.037 0.00 0.00 37.57 1.75
1813 1815 1.526917 CCTATCGGCAAGGCTTGGG 60.527 63.158 27.25 15.30 0.00 4.12
2122 2126 2.093106 CGCTCACAGTAGTTCTACCCT 58.907 52.381 6.39 0.00 0.00 4.34
2123 2127 2.097791 CGCTCACAGTAGTTCTACCCTC 59.902 54.545 6.39 0.00 0.00 4.30
2124 2128 2.427812 GCTCACAGTAGTTCTACCCTCC 59.572 54.545 6.39 0.00 0.00 4.30
2125 2129 2.683867 CTCACAGTAGTTCTACCCTCCG 59.316 54.545 6.39 0.00 0.00 4.63
2126 2130 2.040813 TCACAGTAGTTCTACCCTCCGT 59.959 50.000 6.39 0.00 0.00 4.69
2127 2131 2.422832 CACAGTAGTTCTACCCTCCGTC 59.577 54.545 6.39 0.00 0.00 4.79
2128 2132 2.022934 CAGTAGTTCTACCCTCCGTCC 58.977 57.143 6.39 0.00 0.00 4.79
2129 2133 1.020437 GTAGTTCTACCCTCCGTCCG 58.980 60.000 0.00 0.00 0.00 4.79
2130 2134 0.107017 TAGTTCTACCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
2131 2135 1.379044 GTTCTACCCTCCGTCCGGA 60.379 63.158 0.00 0.00 42.90 5.14
2132 2136 0.967380 GTTCTACCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
2133 2137 0.251742 TTCTACCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2134 2138 0.032813 TCTACCCTCCGTCCGGAAAT 60.033 55.000 5.23 1.03 44.66 2.17
2135 2139 1.215173 TCTACCCTCCGTCCGGAAATA 59.785 52.381 5.23 2.13 44.66 1.40
2136 2140 2.158415 TCTACCCTCCGTCCGGAAATAT 60.158 50.000 5.23 0.00 44.66 1.28
2137 2141 1.503800 ACCCTCCGTCCGGAAATATT 58.496 50.000 5.23 0.00 44.66 1.28
2138 2142 1.841919 ACCCTCCGTCCGGAAATATTT 59.158 47.619 5.23 0.00 44.66 1.40
2139 2143 2.218603 CCCTCCGTCCGGAAATATTTG 58.781 52.381 5.23 0.00 44.66 2.32
2140 2144 2.420967 CCCTCCGTCCGGAAATATTTGT 60.421 50.000 5.23 0.00 44.66 2.83
2141 2145 2.870411 CCTCCGTCCGGAAATATTTGTC 59.130 50.000 5.23 0.00 44.66 3.18
2142 2146 2.538449 CTCCGTCCGGAAATATTTGTCG 59.462 50.000 5.23 9.16 44.66 4.35
2143 2147 1.595794 CCGTCCGGAAATATTTGTCGG 59.404 52.381 23.27 23.27 41.80 4.79
2144 2148 2.542597 CGTCCGGAAATATTTGTCGGA 58.457 47.619 25.84 25.84 46.06 4.55
2147 2151 4.475051 TCCGGAAATATTTGTCGGAGAA 57.525 40.909 25.84 13.11 43.84 2.87
2148 2152 4.834534 TCCGGAAATATTTGTCGGAGAAA 58.165 39.130 25.84 12.87 43.84 2.52
2149 2153 5.433526 TCCGGAAATATTTGTCGGAGAAAT 58.566 37.500 25.84 16.10 43.84 2.17
2150 2154 5.295787 TCCGGAAATATTTGTCGGAGAAATG 59.704 40.000 25.84 5.25 43.84 2.32
2151 2155 4.970003 CGGAAATATTTGTCGGAGAAATGC 59.030 41.667 19.84 8.82 39.69 3.56
2152 2156 5.448496 CGGAAATATTTGTCGGAGAAATGCA 60.448 40.000 19.84 4.79 39.69 3.96
2153 2157 6.507023 GGAAATATTTGTCGGAGAAATGCAT 58.493 36.000 19.84 6.69 39.69 3.96
2154 2158 7.519809 CGGAAATATTTGTCGGAGAAATGCATA 60.520 37.037 19.84 3.83 39.69 3.14
2155 2159 8.134895 GGAAATATTTGTCGGAGAAATGCATAA 58.865 33.333 19.84 3.51 39.69 1.90
2156 2160 9.515020 GAAATATTTGTCGGAGAAATGCATAAA 57.485 29.630 19.84 2.88 39.69 1.40
2157 2161 9.868277 AAATATTTGTCGGAGAAATGCATAAAA 57.132 25.926 19.84 2.25 39.69 1.52
2158 2162 9.868277 AATATTTGTCGGAGAAATGCATAAAAA 57.132 25.926 19.84 1.62 39.69 1.94
2161 2165 9.868277 ATTTGTCGGAGAAATGCATAAAAATAA 57.132 25.926 11.81 0.00 39.69 1.40
2162 2166 9.698309 TTTGTCGGAGAAATGCATAAAAATAAA 57.302 25.926 0.00 0.00 39.69 1.40
2163 2167 9.868277 TTGTCGGAGAAATGCATAAAAATAAAT 57.132 25.926 0.00 0.00 39.69 1.40
2164 2168 9.299963 TGTCGGAGAAATGCATAAAAATAAATG 57.700 29.630 0.00 0.00 39.69 2.32
2165 2169 9.301153 GTCGGAGAAATGCATAAAAATAAATGT 57.699 29.630 0.00 0.00 39.69 2.71
2205 2209 6.929625 ACATCTAGATACATTCATTCCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
2206 2210 6.721668 ACATCTAGATACATTCATTCCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
2207 2211 6.576662 TCTAGATACATTCATTCCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
2208 2212 4.244425 AGATACATTCATTCCTCCGACG 57.756 45.455 0.00 0.00 0.00 5.12
2209 2213 3.889538 AGATACATTCATTCCTCCGACGA 59.110 43.478 0.00 0.00 0.00 4.20
2210 2214 2.586258 ACATTCATTCCTCCGACGAG 57.414 50.000 0.00 0.00 35.72 4.18
2211 2215 1.825474 ACATTCATTCCTCCGACGAGT 59.175 47.619 0.00 0.00 33.93 4.18
2212 2216 3.021695 ACATTCATTCCTCCGACGAGTA 58.978 45.455 0.00 0.00 33.93 2.59
2213 2217 3.637229 ACATTCATTCCTCCGACGAGTAT 59.363 43.478 0.00 0.00 33.93 2.12
2214 2218 4.099573 ACATTCATTCCTCCGACGAGTATT 59.900 41.667 0.00 0.00 33.93 1.89
2215 2219 4.730949 TTCATTCCTCCGACGAGTATTT 57.269 40.909 0.00 0.00 33.93 1.40
2216 2220 4.303086 TCATTCCTCCGACGAGTATTTC 57.697 45.455 0.00 0.00 33.93 2.17
2217 2221 3.067742 TCATTCCTCCGACGAGTATTTCC 59.932 47.826 0.00 0.00 33.93 3.13
2218 2222 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
2219 2223 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
2220 2224 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
2221 2225 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
2222 2226 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
2223 2227 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
2224 2228 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
2225 2229 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
2226 2230 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
2227 2231 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
2228 2232 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2229 2233 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2230 2234 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2231 2235 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2232 2236 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
2233 2237 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
2234 2238 1.379576 CCGGACGGAGGGAGTAGTT 60.380 63.158 4.40 0.00 37.50 2.24
2235 2239 0.969409 CCGGACGGAGGGAGTAGTTT 60.969 60.000 4.40 0.00 37.50 2.66
2236 2240 0.172803 CGGACGGAGGGAGTAGTTTG 59.827 60.000 0.00 0.00 0.00 2.93
2237 2241 1.264295 GGACGGAGGGAGTAGTTTGT 58.736 55.000 0.00 0.00 0.00 2.83
2238 2242 2.450476 GGACGGAGGGAGTAGTTTGTA 58.550 52.381 0.00 0.00 0.00 2.41
2239 2243 2.827921 GGACGGAGGGAGTAGTTTGTAA 59.172 50.000 0.00 0.00 0.00 2.41
2240 2244 3.450096 GGACGGAGGGAGTAGTTTGTAAT 59.550 47.826 0.00 0.00 0.00 1.89
2241 2245 4.441217 GGACGGAGGGAGTAGTTTGTAATC 60.441 50.000 0.00 0.00 0.00 1.75
2242 2246 4.091549 ACGGAGGGAGTAGTTTGTAATCA 58.908 43.478 0.00 0.00 0.00 2.57
2243 2247 4.715297 ACGGAGGGAGTAGTTTGTAATCAT 59.285 41.667 0.00 0.00 0.00 2.45
2244 2248 5.163437 ACGGAGGGAGTAGTTTGTAATCATC 60.163 44.000 0.00 0.00 0.00 2.92
2245 2249 5.163447 CGGAGGGAGTAGTTTGTAATCATCA 60.163 44.000 0.00 0.00 0.00 3.07
2246 2250 6.463049 CGGAGGGAGTAGTTTGTAATCATCAT 60.463 42.308 0.00 0.00 0.00 2.45
2247 2251 7.283329 GGAGGGAGTAGTTTGTAATCATCATT 58.717 38.462 0.00 0.00 0.00 2.57
2248 2252 7.775561 GGAGGGAGTAGTTTGTAATCATCATTT 59.224 37.037 0.00 0.00 0.00 2.32
2249 2253 9.178758 GAGGGAGTAGTTTGTAATCATCATTTT 57.821 33.333 0.00 0.00 0.00 1.82
2250 2254 9.178758 AGGGAGTAGTTTGTAATCATCATTTTC 57.821 33.333 0.00 0.00 0.00 2.29
2251 2255 9.178758 GGGAGTAGTTTGTAATCATCATTTTCT 57.821 33.333 0.00 0.00 0.00 2.52
2252 2256 9.994432 GGAGTAGTTTGTAATCATCATTTTCTG 57.006 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 303 2.103263 ACTGGAAGAGTCAAGCGAAAGT 59.897 45.455 0.00 0.00 37.43 2.66
723 724 0.611714 GTTCCTCAAAGCCTACCCGA 59.388 55.000 0.00 0.00 0.00 5.14
922 924 4.314961 ACAATCTTATTCGAGCACACACA 58.685 39.130 0.00 0.00 0.00 3.72
1455 1457 2.439507 TGACTCTGACCTTTCAAAGCCT 59.560 45.455 0.00 0.00 0.00 4.58
1643 1645 7.862873 GCTGTCTTTTTAGCTTCAAAACTACAT 59.137 33.333 0.00 0.00 36.99 2.29
1767 1769 2.177038 CTCGCTCAGTTCGCTCGT 59.823 61.111 0.00 0.00 0.00 4.18
2122 2126 2.542597 CGACAAATATTTCCGGACGGA 58.457 47.619 1.83 9.76 43.52 4.69
2123 2127 1.595794 CCGACAAATATTTCCGGACGG 59.404 52.381 23.90 17.76 42.49 4.79
2124 2128 2.538449 CTCCGACAAATATTTCCGGACG 59.462 50.000 25.56 19.91 43.47 4.79
2125 2129 3.788937 TCTCCGACAAATATTTCCGGAC 58.211 45.455 25.56 6.73 43.47 4.79
2126 2130 4.475051 TTCTCCGACAAATATTTCCGGA 57.525 40.909 26.63 26.63 45.74 5.14
2127 2131 5.510671 CATTTCTCCGACAAATATTTCCGG 58.489 41.667 22.93 22.93 41.36 5.14
2128 2132 4.970003 GCATTTCTCCGACAAATATTTCCG 59.030 41.667 0.00 5.26 0.00 4.30
2129 2133 5.890334 TGCATTTCTCCGACAAATATTTCC 58.110 37.500 0.00 0.00 0.00 3.13
2130 2134 9.515020 TTTATGCATTTCTCCGACAAATATTTC 57.485 29.630 3.54 0.00 0.00 2.17
2131 2135 9.868277 TTTTATGCATTTCTCCGACAAATATTT 57.132 25.926 3.54 0.00 0.00 1.40
2132 2136 9.868277 TTTTTATGCATTTCTCCGACAAATATT 57.132 25.926 3.54 0.00 0.00 1.28
2135 2139 9.868277 TTATTTTTATGCATTTCTCCGACAAAT 57.132 25.926 3.54 0.00 0.00 2.32
2136 2140 9.698309 TTTATTTTTATGCATTTCTCCGACAAA 57.302 25.926 3.54 0.00 0.00 2.83
2137 2141 9.868277 ATTTATTTTTATGCATTTCTCCGACAA 57.132 25.926 3.54 0.00 0.00 3.18
2138 2142 9.299963 CATTTATTTTTATGCATTTCTCCGACA 57.700 29.630 3.54 0.00 0.00 4.35
2139 2143 9.301153 ACATTTATTTTTATGCATTTCTCCGAC 57.699 29.630 3.54 0.00 0.00 4.79
2179 2183 8.690884 CGGAGGAATGAATGTATCTAGATGTAT 58.309 37.037 15.79 6.61 0.00 2.29
2180 2184 7.888546 TCGGAGGAATGAATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
2181 2185 6.721668 TCGGAGGAATGAATGTATCTAGATGT 59.278 38.462 15.79 0.00 0.00 3.06
2182 2186 7.032580 GTCGGAGGAATGAATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
2183 2187 6.127869 CGTCGGAGGAATGAATGTATCTAGAT 60.128 42.308 10.73 10.73 0.00 1.98
2184 2188 5.181433 CGTCGGAGGAATGAATGTATCTAGA 59.819 44.000 0.00 0.00 0.00 2.43
2185 2189 5.181433 TCGTCGGAGGAATGAATGTATCTAG 59.819 44.000 0.00 0.00 0.00 2.43
2186 2190 5.067954 TCGTCGGAGGAATGAATGTATCTA 58.932 41.667 0.00 0.00 0.00 1.98
2187 2191 3.889538 TCGTCGGAGGAATGAATGTATCT 59.110 43.478 0.00 0.00 0.00 1.98
2188 2192 4.230657 CTCGTCGGAGGAATGAATGTATC 58.769 47.826 1.73 0.00 36.61 2.24
2189 2193 3.637229 ACTCGTCGGAGGAATGAATGTAT 59.363 43.478 1.73 0.00 44.93 2.29
2190 2194 3.021695 ACTCGTCGGAGGAATGAATGTA 58.978 45.455 1.73 0.00 44.93 2.29
2191 2195 1.825474 ACTCGTCGGAGGAATGAATGT 59.175 47.619 1.73 0.00 44.93 2.71
2192 2196 2.586258 ACTCGTCGGAGGAATGAATG 57.414 50.000 1.73 0.00 44.93 2.67
2193 2197 4.939052 AATACTCGTCGGAGGAATGAAT 57.061 40.909 1.73 0.00 44.93 2.57
2194 2198 4.441079 GGAAATACTCGTCGGAGGAATGAA 60.441 45.833 1.73 0.00 44.93 2.57
2195 2199 3.067742 GGAAATACTCGTCGGAGGAATGA 59.932 47.826 1.73 0.00 44.93 2.57
2196 2200 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
2197 2201 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
2198 2202 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
2199 2203 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
2200 2204 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
2201 2205 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
2202 2206 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
2203 2207 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
2204 2208 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
2205 2209 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
2206 2210 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
2207 2211 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
2208 2212 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
2209 2213 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2210 2214 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2211 2215 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2212 2216 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2213 2217 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2214 2218 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2215 2219 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2216 2220 0.969409 AAACTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
2217 2221 0.172803 CAAACTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
2218 2222 1.264295 ACAAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2219 2223 4.159135 TGATTACAAACTACTCCCTCCGTC 59.841 45.833 0.00 0.00 0.00 4.79
2220 2224 4.091549 TGATTACAAACTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
2221 2225 4.730949 TGATTACAAACTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
2222 2226 6.235231 TGATGATTACAAACTACTCCCTCC 57.765 41.667 0.00 0.00 0.00 4.30
2223 2227 8.738645 AAATGATGATTACAAACTACTCCCTC 57.261 34.615 0.00 0.00 0.00 4.30
2224 2228 9.178758 GAAAATGATGATTACAAACTACTCCCT 57.821 33.333 0.00 0.00 0.00 4.20
2225 2229 9.178758 AGAAAATGATGATTACAAACTACTCCC 57.821 33.333 0.00 0.00 0.00 4.30
2226 2230 9.994432 CAGAAAATGATGATTACAAACTACTCC 57.006 33.333 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.