Multiple sequence alignment - TraesCS1B01G449800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G449800 chr1B 100.000 5266 0 0 507 5772 668139719 668144984 0.000000e+00 9725.0
1 TraesCS1B01G449800 chr1B 88.657 1340 118 14 2542 3873 209995401 209994088 0.000000e+00 1602.0
2 TraesCS1B01G449800 chr1B 88.846 1300 111 15 2542 3831 209652744 209651469 0.000000e+00 1567.0
3 TraesCS1B01G449800 chr1B 87.812 1001 94 15 3882 4875 209643733 209642754 0.000000e+00 1147.0
4 TraesCS1B01G449800 chr1B 85.349 860 88 11 1213 2038 209996960 209996105 0.000000e+00 856.0
5 TraesCS1B01G449800 chr1B 86.585 656 73 10 1395 2038 209654100 209653448 0.000000e+00 710.0
6 TraesCS1B01G449800 chr1B 90.870 460 37 3 2044 2502 209653200 209652745 3.820000e-171 612.0
7 TraesCS1B01G449800 chr1B 89.348 460 44 3 2044 2502 209995857 209995402 1.800000e-159 573.0
8 TraesCS1B01G449800 chr1B 88.732 355 33 5 2044 2396 212803635 212803286 1.490000e-115 427.0
9 TraesCS1B01G449800 chr1B 89.726 292 20 8 507 798 633861303 633861584 1.180000e-96 364.0
10 TraesCS1B01G449800 chr1B 100.000 167 0 0 1 167 668139213 668139379 5.620000e-80 309.0
11 TraesCS1B01G449800 chr1B 81.566 396 40 18 1015 1395 209654772 209654395 4.370000e-76 296.0
12 TraesCS1B01G449800 chr1B 92.899 169 7 2 3 167 162361111 162360944 2.080000e-59 241.0
13 TraesCS1B01G449800 chr1B 90.968 155 12 2 4935 5089 28065449 28065601 2.110000e-49 207.0
14 TraesCS1B01G449800 chr1A 94.626 2884 104 25 2066 4937 576535081 576532237 0.000000e+00 4420.0
15 TraesCS1B01G449800 chr1A 95.000 1060 49 2 953 2008 576536543 576535484 0.000000e+00 1661.0
16 TraesCS1B01G449800 chr1A 87.715 1107 93 19 3882 4962 155076247 155077336 0.000000e+00 1251.0
17 TraesCS1B01G449800 chr1A 87.887 776 63 15 2537 3304 155070520 155071272 0.000000e+00 883.0
18 TraesCS1B01G449800 chr1A 88.325 591 57 6 1457 2038 155069228 155069815 0.000000e+00 699.0
19 TraesCS1B01G449800 chr1A 92.763 456 31 2 2044 2498 155070066 155070520 0.000000e+00 658.0
20 TraesCS1B01G449800 chr1A 86.823 554 40 10 1015 1549 155068694 155069233 6.440000e-164 588.0
21 TraesCS1B01G449800 chr1A 88.067 419 28 11 5061 5475 576532238 576531838 1.460000e-130 477.0
22 TraesCS1B01G449800 chr1A 93.831 308 19 0 3301 3608 155073067 155073374 1.130000e-126 464.0
23 TraesCS1B01G449800 chr1A 94.161 274 15 1 3601 3873 155074907 155075180 3.220000e-112 416.0
24 TraesCS1B01G449800 chr1A 93.532 201 9 1 5572 5772 576531851 576531655 4.370000e-76 296.0
25 TraesCS1B01G449800 chr1A 91.837 98 6 2 859 954 576536666 576536569 1.010000e-27 135.0
26 TraesCS1B01G449800 chr1A 100.000 44 0 0 799 842 576536697 576536654 1.330000e-11 82.4
27 TraesCS1B01G449800 chr1D 95.742 1832 47 8 2066 3884 479925168 479926981 0.000000e+00 2922.0
28 TraesCS1B01G449800 chr1D 91.159 1346 85 15 2537 3873 137637578 137636258 0.000000e+00 1796.0
29 TraesCS1B01G449800 chr1D 96.212 1056 38 2 3882 4937 479927718 479928771 0.000000e+00 1727.0
30 TraesCS1B01G449800 chr1D 95.147 1092 37 5 953 2038 479923723 479924804 0.000000e+00 1709.0
31 TraesCS1B01G449800 chr1D 89.458 996 83 10 3882 4875 137635626 137634651 0.000000e+00 1238.0
32 TraesCS1B01G449800 chr1D 86.513 1127 84 24 953 2038 137644459 137643360 0.000000e+00 1177.0
33 TraesCS1B01G449800 chr1D 89.021 419 26 9 5061 5475 479928770 479929172 8.630000e-138 501.0
34 TraesCS1B01G449800 chr1D 90.809 272 20 3 2044 2311 137643116 137642846 5.500000e-95 359.0
35 TraesCS1B01G449800 chr1D 97.938 194 4 0 2308 2501 137637768 137637575 2.580000e-88 337.0
36 TraesCS1B01G449800 chr1D 93.035 201 10 1 5572 5772 479929159 479929355 2.030000e-74 291.0
37 TraesCS1B01G449800 chr1D 93.878 98 4 2 859 954 479923600 479923697 4.660000e-31 147.0
38 TraesCS1B01G449800 chr1D 92.000 100 8 0 5474 5573 434510809 434510908 2.170000e-29 141.0
39 TraesCS1B01G449800 chr1D 84.733 131 13 7 5471 5598 435794891 435795017 2.180000e-24 124.0
40 TraesCS1B01G449800 chr1D 90.164 61 6 0 4877 4937 137634628 137634568 4.790000e-11 80.5
41 TraesCS1B01G449800 chr4A 91.809 293 16 6 507 798 664233079 664232794 9.010000e-108 401.0
42 TraesCS1B01G449800 chr3B 90.411 292 16 6 507 798 603442621 603442342 1.960000e-99 374.0
43 TraesCS1B01G449800 chr3B 89.041 292 25 5 507 798 530547447 530547163 7.110000e-94 355.0
44 TraesCS1B01G449800 chr3B 93.252 163 8 2 4 164 811982490 811982329 2.690000e-58 237.0
45 TraesCS1B01G449800 chr3B 90.722 97 9 0 5474 5570 582414682 582414778 4.690000e-26 130.0
46 TraesCS1B01G449800 chr6B 89.655 290 22 6 507 795 681225136 681225418 4.250000e-96 363.0
47 TraesCS1B01G449800 chr6B 89.041 292 27 3 508 798 666091487 666091200 1.980000e-94 357.0
48 TraesCS1B01G449800 chr6B 88.475 295 23 9 507 799 612138850 612139135 4.280000e-91 346.0
49 TraesCS1B01G449800 chr6B 98.450 129 2 0 4935 5063 644808896 644809024 1.620000e-55 228.0
50 TraesCS1B01G449800 chr6B 96.970 132 4 0 4935 5066 288945028 288944897 7.530000e-54 222.0
51 TraesCS1B01G449800 chr6B 93.878 147 8 1 4924 5069 585806478 585806332 2.710000e-53 220.0
52 TraesCS1B01G449800 chr5B 89.761 293 17 9 507 798 489848377 489848097 4.250000e-96 363.0
53 TraesCS1B01G449800 chr5B 95.105 143 4 2 1 140 660347348 660347490 7.530000e-54 222.0
54 TraesCS1B01G449800 chr5B 96.296 135 4 1 4936 5069 384570608 384570474 2.710000e-53 220.0
55 TraesCS1B01G449800 chr5B 89.714 175 8 7 2 167 656033620 656033793 1.260000e-51 215.0
56 TraesCS1B01G449800 chr2B 89.860 286 15 9 513 798 742657104 742656833 7.110000e-94 355.0
57 TraesCS1B01G449800 chr2B 94.048 168 7 2 2 167 742643323 742643489 9.600000e-63 252.0
58 TraesCS1B01G449800 chr2B 95.890 146 1 2 1 141 170084630 170084775 1.250000e-56 231.0
59 TraesCS1B01G449800 chr2B 95.804 143 3 1 1 140 154243445 154243587 1.620000e-55 228.0
60 TraesCS1B01G449800 chr2B 89.474 171 13 5 1 166 138803169 138802999 1.630000e-50 211.0
61 TraesCS1B01G449800 chr2B 92.500 40 1 2 5393 5432 779671462 779671425 8.080000e-04 56.5
62 TraesCS1B01G449800 chr7B 90.805 174 7 3 1 165 592717841 592717668 2.090000e-54 224.0
63 TraesCS1B01G449800 chr7B 93.056 144 10 0 4920 5063 311539606 311539749 1.630000e-50 211.0
64 TraesCS1B01G449800 chr7B 92.929 99 7 0 5474 5572 443639168 443639266 1.680000e-30 145.0
65 TraesCS1B01G449800 chr7B 92.000 100 8 0 5472 5571 742412212 742412113 2.170000e-29 141.0
66 TraesCS1B01G449800 chr3D 96.269 134 5 0 4936 5069 11338051 11337918 2.710000e-53 220.0
67 TraesCS1B01G449800 chr3D 91.262 103 8 1 5474 5576 605994501 605994400 7.800000e-29 139.0
68 TraesCS1B01G449800 chr4B 94.928 138 7 0 4929 5066 413734315 413734178 3.500000e-52 217.0
69 TraesCS1B01G449800 chr6A 96.124 129 5 0 4935 5063 578700012 578699884 1.630000e-50 211.0
70 TraesCS1B01G449800 chr2A 85.500 200 22 4 5574 5770 698277472 698277667 9.810000e-48 202.0
71 TraesCS1B01G449800 chr7A 91.667 108 7 2 5466 5571 550314394 550314501 1.300000e-31 148.0
72 TraesCS1B01G449800 chr6D 92.929 99 7 0 5474 5572 16690697 16690599 1.680000e-30 145.0
73 TraesCS1B01G449800 chr5A 92.857 98 7 0 5474 5571 157237830 157237927 6.030000e-30 143.0
74 TraesCS1B01G449800 chr4D 83.333 150 16 7 3054 3202 20120619 20120760 4.690000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G449800 chr1B 668139213 668144984 5771 False 5017.000000 9725 100.000000 1 5772 2 chr1B.!!$F3 5771
1 TraesCS1B01G449800 chr1B 209642754 209643733 979 True 1147.000000 1147 87.812000 3882 4875 1 chr1B.!!$R2 993
2 TraesCS1B01G449800 chr1B 209994088 209996960 2872 True 1010.333333 1602 87.784667 1213 3873 3 chr1B.!!$R5 2660
3 TraesCS1B01G449800 chr1B 209651469 209654772 3303 True 796.250000 1567 86.966750 1015 3831 4 chr1B.!!$R4 2816
4 TraesCS1B01G449800 chr1A 576531655 576536697 5042 True 1178.566667 4420 93.843667 799 5772 6 chr1A.!!$R1 4973
5 TraesCS1B01G449800 chr1A 155068694 155077336 8642 False 708.428571 1251 90.215000 1015 4962 7 chr1A.!!$F1 3947
6 TraesCS1B01G449800 chr1D 479923600 479929355 5755 False 1216.166667 2922 93.839167 859 5772 6 chr1D.!!$F3 4913
7 TraesCS1B01G449800 chr1D 137634568 137637768 3200 True 862.875000 1796 92.179750 2308 4937 4 chr1D.!!$R1 2629
8 TraesCS1B01G449800 chr1D 137642846 137644459 1613 True 768.000000 1177 88.661000 953 2311 2 chr1D.!!$R2 1358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 708 0.038166 AAATTCAGAAGGAGCGCCCA 59.962 50.0 15.92 0.0 37.41 5.36 F
761 762 0.168788 CAATTGGCGCTGATCGTTGT 59.831 50.0 7.64 0.0 41.07 3.32 F
770 771 0.460987 CTGATCGTTGTGAGGCTCCC 60.461 60.0 12.86 0.0 0.00 4.30 F
925 928 0.817634 CCCACAGCACCAGAACGAAA 60.818 55.0 0.00 0.0 0.00 3.46 F
1206 1247 0.947244 GTTCTCACAAGCCACCACTG 59.053 55.0 0.00 0.0 0.00 3.66 F
1645 2104 0.973496 AGGAAGAAGAGGAGGCGACC 60.973 60.0 0.00 0.0 0.00 4.79 F
3117 4023 0.972134 TTCCTCTGCTGTGACCTCTG 59.028 55.0 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1955 0.441533 TCGCTCTCGTACTCGTCAAC 59.558 55.000 0.00 0.0 38.33 3.18 R
2589 3486 1.002430 GTCACAATCCTGAGGCAGTCA 59.998 52.381 0.00 0.0 0.00 3.41 R
2595 3492 1.134580 AGATGCGTCACAATCCTGAGG 60.135 52.381 8.99 0.0 0.00 3.86 R
2797 3696 1.832883 TGTCTGCCACAACACAACTT 58.167 45.000 0.00 0.0 29.30 2.66 R
2879 3783 9.102757 ACAGTCAGTTCATTTGCTAACTATATG 57.897 33.333 0.00 0.0 34.23 1.78 R
3299 4205 7.543868 TCGGTGAAAAATAATTTGTTGGCATAG 59.456 33.333 0.00 0.0 0.00 2.23 R
5039 11118 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.639286 CACAACCGTGCCTCTTGC 59.361 61.111 0.00 0.00 36.06 4.01
51 52 2.972505 ACAACCGTGCCTCTTGCG 60.973 61.111 0.00 0.00 45.60 4.85
67 68 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
68 69 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
69 70 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
70 71 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
71 72 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
72 73 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
73 74 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
117 118 4.316205 TTTTTCCCTTTTCGAAAGAGGC 57.684 40.909 23.02 0.00 43.69 4.70
118 119 2.649531 TTCCCTTTTCGAAAGAGGCA 57.350 45.000 23.02 13.14 43.69 4.75
119 120 1.892209 TCCCTTTTCGAAAGAGGCAC 58.108 50.000 23.02 0.00 43.69 5.01
120 121 0.517316 CCCTTTTCGAAAGAGGCACG 59.483 55.000 23.02 12.67 43.69 5.34
121 122 0.110192 CCTTTTCGAAAGAGGCACGC 60.110 55.000 19.33 0.00 43.69 5.34
122 123 0.110192 CTTTTCGAAAGAGGCACGCC 60.110 55.000 10.98 0.00 43.69 5.68
123 124 1.512156 TTTTCGAAAGAGGCACGCCC 61.512 55.000 10.98 0.00 43.69 6.13
124 125 4.735132 TCGAAAGAGGCACGCCCG 62.735 66.667 3.95 0.59 39.21 6.13
141 142 4.261888 GTGCCTCTCGCGAAAGAA 57.738 55.556 11.91 0.00 42.08 2.52
142 143 2.528797 GTGCCTCTCGCGAAAGAAA 58.471 52.632 11.91 0.00 42.08 2.52
143 144 0.865769 GTGCCTCTCGCGAAAGAAAA 59.134 50.000 11.91 0.00 42.08 2.29
144 145 1.263217 GTGCCTCTCGCGAAAGAAAAA 59.737 47.619 11.91 0.00 42.08 1.94
596 597 4.783764 AAATTTGGTCGAAAAGCTAGGG 57.216 40.909 0.00 0.00 0.00 3.53
597 598 3.713826 ATTTGGTCGAAAAGCTAGGGA 57.286 42.857 0.00 0.00 0.00 4.20
598 599 3.495434 TTTGGTCGAAAAGCTAGGGAA 57.505 42.857 0.00 0.00 0.00 3.97
599 600 2.762535 TGGTCGAAAAGCTAGGGAAG 57.237 50.000 0.00 0.00 0.00 3.46
600 601 2.253610 TGGTCGAAAAGCTAGGGAAGA 58.746 47.619 0.00 0.00 0.00 2.87
601 602 2.028385 TGGTCGAAAAGCTAGGGAAGAC 60.028 50.000 0.00 0.00 0.00 3.01
602 603 2.619147 GTCGAAAAGCTAGGGAAGACC 58.381 52.381 0.00 0.00 40.67 3.85
603 604 1.203994 TCGAAAAGCTAGGGAAGACCG 59.796 52.381 0.00 0.00 46.96 4.79
604 605 1.203994 CGAAAAGCTAGGGAAGACCGA 59.796 52.381 0.00 0.00 46.96 4.69
605 606 2.159085 CGAAAAGCTAGGGAAGACCGAT 60.159 50.000 0.00 0.00 46.96 4.18
606 607 3.067742 CGAAAAGCTAGGGAAGACCGATA 59.932 47.826 0.00 0.00 46.96 2.92
607 608 4.623002 GAAAAGCTAGGGAAGACCGATAG 58.377 47.826 0.00 0.00 46.96 2.08
608 609 3.596940 AAGCTAGGGAAGACCGATAGA 57.403 47.619 0.00 0.00 46.96 1.98
609 610 3.596940 AGCTAGGGAAGACCGATAGAA 57.403 47.619 0.00 0.00 46.96 2.10
610 611 3.912248 AGCTAGGGAAGACCGATAGAAA 58.088 45.455 0.00 0.00 46.96 2.52
611 612 4.287552 AGCTAGGGAAGACCGATAGAAAA 58.712 43.478 0.00 0.00 46.96 2.29
612 613 4.099727 AGCTAGGGAAGACCGATAGAAAAC 59.900 45.833 0.00 0.00 46.96 2.43
613 614 3.908643 AGGGAAGACCGATAGAAAACC 57.091 47.619 0.00 0.00 46.96 3.27
614 615 3.178865 AGGGAAGACCGATAGAAAACCA 58.821 45.455 0.00 0.00 46.96 3.67
615 616 3.585732 AGGGAAGACCGATAGAAAACCAA 59.414 43.478 0.00 0.00 46.96 3.67
616 617 4.042435 AGGGAAGACCGATAGAAAACCAAA 59.958 41.667 0.00 0.00 46.96 3.28
617 618 4.763279 GGGAAGACCGATAGAAAACCAAAA 59.237 41.667 0.00 0.00 36.97 2.44
618 619 5.335426 GGGAAGACCGATAGAAAACCAAAAC 60.335 44.000 0.00 0.00 36.97 2.43
619 620 5.352643 AAGACCGATAGAAAACCAAAACG 57.647 39.130 0.00 0.00 39.76 3.60
620 621 4.383173 AGACCGATAGAAAACCAAAACGT 58.617 39.130 0.00 0.00 39.76 3.99
621 622 4.450080 AGACCGATAGAAAACCAAAACGTC 59.550 41.667 0.00 0.00 39.76 4.34
622 623 4.128643 ACCGATAGAAAACCAAAACGTCA 58.871 39.130 0.00 0.00 39.76 4.35
623 624 4.575645 ACCGATAGAAAACCAAAACGTCAA 59.424 37.500 0.00 0.00 39.76 3.18
624 625 5.066246 ACCGATAGAAAACCAAAACGTCAAA 59.934 36.000 0.00 0.00 39.76 2.69
625 626 5.972382 CCGATAGAAAACCAAAACGTCAAAA 59.028 36.000 0.00 0.00 39.76 2.44
626 627 6.472808 CCGATAGAAAACCAAAACGTCAAAAA 59.527 34.615 0.00 0.00 39.76 1.94
659 660 6.477669 AAAAACCGTTTAAAAAGCCGAAAA 57.522 29.167 0.00 0.00 0.00 2.29
660 661 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
663 664 4.079369 CGTTTAAAAAGCCGAAAACGTG 57.921 40.909 10.16 0.00 45.43 4.49
664 665 3.543099 CGTTTAAAAAGCCGAAAACGTGT 59.457 39.130 10.16 0.00 45.43 4.49
665 666 4.544772 CGTTTAAAAAGCCGAAAACGTGTG 60.545 41.667 10.16 0.00 45.43 3.82
666 667 1.273688 AAAAAGCCGAAAACGTGTGC 58.726 45.000 0.00 0.00 0.00 4.57
667 668 0.863957 AAAAGCCGAAAACGTGTGCG 60.864 50.000 0.00 0.00 44.93 5.34
704 705 2.997485 ACAAAATTCAGAAGGAGCGC 57.003 45.000 0.00 0.00 0.00 5.92
705 706 1.541588 ACAAAATTCAGAAGGAGCGCC 59.458 47.619 2.29 0.00 0.00 6.53
706 707 1.135286 CAAAATTCAGAAGGAGCGCCC 60.135 52.381 2.29 5.07 33.31 6.13
707 708 0.038166 AAATTCAGAAGGAGCGCCCA 59.962 50.000 15.92 0.00 37.41 5.36
708 709 0.393537 AATTCAGAAGGAGCGCCCAG 60.394 55.000 15.92 4.59 37.41 4.45
709 710 1.267574 ATTCAGAAGGAGCGCCCAGA 61.268 55.000 15.92 6.52 37.41 3.86
710 711 1.892819 TTCAGAAGGAGCGCCCAGAG 61.893 60.000 15.92 4.59 37.41 3.35
711 712 3.780173 AGAAGGAGCGCCCAGAGC 61.780 66.667 15.92 3.76 37.41 4.09
720 721 4.664677 GCCCAGAGCGTGACACGT 62.665 66.667 27.32 15.14 44.73 4.49
721 722 2.734723 CCCAGAGCGTGACACGTG 60.735 66.667 27.32 15.48 44.73 4.49
722 723 2.734723 CCAGAGCGTGACACGTGG 60.735 66.667 27.32 22.46 44.73 4.94
723 724 3.406361 CAGAGCGTGACACGTGGC 61.406 66.667 27.32 19.24 44.73 5.01
725 726 4.994201 GAGCGTGACACGTGGCGA 62.994 66.667 27.32 10.79 44.73 5.54
726 727 4.578898 AGCGTGACACGTGGCGAA 62.579 61.111 27.32 5.52 44.73 4.70
727 728 3.411351 GCGTGACACGTGGCGAAT 61.411 61.111 27.32 4.58 44.73 3.34
728 729 2.469847 CGTGACACGTGGCGAATG 59.530 61.111 21.57 3.20 36.74 2.67
729 730 2.860293 GTGACACGTGGCGAATGG 59.140 61.111 21.57 0.00 0.00 3.16
730 731 3.047280 TGACACGTGGCGAATGGC 61.047 61.111 21.57 0.00 42.51 4.40
731 732 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
732 733 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
733 734 3.049674 CACGTGGCGAATGGCTGT 61.050 61.111 7.95 0.00 42.94 4.40
734 735 3.049674 ACGTGGCGAATGGCTGTG 61.050 61.111 0.00 0.00 42.94 3.66
735 736 2.741985 CGTGGCGAATGGCTGTGA 60.742 61.111 0.00 0.00 42.94 3.58
736 737 2.743752 CGTGGCGAATGGCTGTGAG 61.744 63.158 0.00 0.00 42.94 3.51
737 738 2.747460 TGGCGAATGGCTGTGAGC 60.747 61.111 0.00 0.00 42.94 4.26
738 739 3.869272 GGCGAATGGCTGTGAGCG 61.869 66.667 0.00 0.00 43.62 5.03
739 740 4.527157 GCGAATGGCTGTGAGCGC 62.527 66.667 0.00 0.00 43.62 5.92
740 741 4.214383 CGAATGGCTGTGAGCGCG 62.214 66.667 0.00 0.00 43.62 6.86
741 742 4.527157 GAATGGCTGTGAGCGCGC 62.527 66.667 26.66 26.66 43.62 6.86
746 747 4.107051 GCTGTGAGCGCGCCAATT 62.107 61.111 30.33 9.44 0.00 2.32
747 748 2.202388 CTGTGAGCGCGCCAATTG 60.202 61.111 30.33 12.20 0.00 2.32
748 749 3.672255 CTGTGAGCGCGCCAATTGG 62.672 63.158 30.33 20.81 38.53 3.16
758 759 3.501396 CCAATTGGCGCTGATCGT 58.499 55.556 12.53 0.00 41.07 3.73
759 760 1.802636 CCAATTGGCGCTGATCGTT 59.197 52.632 12.53 0.00 41.07 3.85
760 761 0.523968 CCAATTGGCGCTGATCGTTG 60.524 55.000 12.53 4.57 41.07 4.10
761 762 0.168788 CAATTGGCGCTGATCGTTGT 59.831 50.000 7.64 0.00 41.07 3.32
762 763 0.168788 AATTGGCGCTGATCGTTGTG 59.831 50.000 7.64 0.00 41.07 3.33
763 764 0.673333 ATTGGCGCTGATCGTTGTGA 60.673 50.000 7.64 0.00 41.07 3.58
764 765 1.291184 TTGGCGCTGATCGTTGTGAG 61.291 55.000 7.64 0.00 41.07 3.51
765 766 2.456119 GGCGCTGATCGTTGTGAGG 61.456 63.158 7.64 0.00 41.07 3.86
766 767 3.084579 CGCTGATCGTTGTGAGGC 58.915 61.111 0.00 0.00 0.00 4.70
767 768 1.446792 CGCTGATCGTTGTGAGGCT 60.447 57.895 0.00 0.00 0.00 4.58
768 769 1.416813 CGCTGATCGTTGTGAGGCTC 61.417 60.000 7.79 7.79 0.00 4.70
769 770 1.086634 GCTGATCGTTGTGAGGCTCC 61.087 60.000 12.86 4.00 0.00 4.70
770 771 0.460987 CTGATCGTTGTGAGGCTCCC 60.461 60.000 12.86 0.00 0.00 4.30
771 772 1.519455 GATCGTTGTGAGGCTCCCG 60.519 63.158 12.86 9.14 0.00 5.14
772 773 1.945354 GATCGTTGTGAGGCTCCCGA 61.945 60.000 12.86 14.08 0.00 5.14
773 774 1.541310 ATCGTTGTGAGGCTCCCGAA 61.541 55.000 12.86 0.00 0.00 4.30
774 775 1.738099 CGTTGTGAGGCTCCCGAAG 60.738 63.158 12.86 0.00 0.00 3.79
787 788 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
788 789 2.959275 CGAAGGAGCGCTCGTTAAT 58.041 52.632 36.96 21.62 37.75 1.40
789 790 1.278238 CGAAGGAGCGCTCGTTAATT 58.722 50.000 36.96 21.28 37.75 1.40
790 791 2.456989 CGAAGGAGCGCTCGTTAATTA 58.543 47.619 36.96 0.00 37.75 1.40
791 792 2.468040 CGAAGGAGCGCTCGTTAATTAG 59.532 50.000 36.96 23.67 37.75 1.73
792 793 3.445857 GAAGGAGCGCTCGTTAATTAGT 58.554 45.455 36.96 19.55 37.75 2.24
793 794 3.521947 AGGAGCGCTCGTTAATTAGTT 57.478 42.857 29.81 3.47 0.00 2.24
794 795 3.187700 AGGAGCGCTCGTTAATTAGTTG 58.812 45.455 29.81 0.00 0.00 3.16
795 796 2.285660 GGAGCGCTCGTTAATTAGTTGC 60.286 50.000 29.81 8.45 0.00 4.17
796 797 2.603560 GAGCGCTCGTTAATTAGTTGCT 59.396 45.455 23.61 7.90 31.95 3.91
797 798 2.603560 AGCGCTCGTTAATTAGTTGCTC 59.396 45.455 2.64 0.00 0.00 4.26
829 830 5.968254 TGTATTCAGTTTAGCATCCGTACA 58.032 37.500 0.00 0.00 0.00 2.90
830 831 6.399743 TGTATTCAGTTTAGCATCCGTACAA 58.600 36.000 0.00 0.00 0.00 2.41
831 832 6.533723 TGTATTCAGTTTAGCATCCGTACAAG 59.466 38.462 0.00 0.00 0.00 3.16
832 833 3.857052 TCAGTTTAGCATCCGTACAAGG 58.143 45.455 0.00 0.00 0.00 3.61
833 834 2.351726 CAGTTTAGCATCCGTACAAGGC 59.648 50.000 0.00 0.00 0.00 4.35
834 835 2.236395 AGTTTAGCATCCGTACAAGGCT 59.764 45.455 9.08 9.08 38.55 4.58
835 836 3.449737 AGTTTAGCATCCGTACAAGGCTA 59.550 43.478 7.34 7.34 36.10 3.93
836 837 4.101119 AGTTTAGCATCCGTACAAGGCTAT 59.899 41.667 11.10 0.00 36.98 2.97
837 838 5.303589 AGTTTAGCATCCGTACAAGGCTATA 59.696 40.000 11.10 5.55 36.98 1.31
838 839 5.995565 TTAGCATCCGTACAAGGCTATAT 57.004 39.130 11.10 0.00 36.98 0.86
839 840 4.891992 AGCATCCGTACAAGGCTATATT 57.108 40.909 2.86 0.00 32.09 1.28
840 841 5.228945 AGCATCCGTACAAGGCTATATTT 57.771 39.130 2.86 0.00 32.09 1.40
841 842 4.997395 AGCATCCGTACAAGGCTATATTTG 59.003 41.667 2.86 0.00 32.09 2.32
842 843 4.154195 GCATCCGTACAAGGCTATATTTGG 59.846 45.833 0.00 0.00 0.00 3.28
843 844 3.735591 TCCGTACAAGGCTATATTTGGC 58.264 45.455 0.00 0.00 0.00 4.52
844 845 2.478894 CCGTACAAGGCTATATTTGGCG 59.521 50.000 0.00 0.00 35.01 5.69
845 846 3.128349 CGTACAAGGCTATATTTGGCGT 58.872 45.455 0.00 0.00 35.01 5.68
846 847 3.183775 CGTACAAGGCTATATTTGGCGTC 59.816 47.826 0.00 0.00 35.01 5.19
847 848 3.560636 ACAAGGCTATATTTGGCGTCT 57.439 42.857 0.00 0.00 35.01 4.18
848 849 3.206150 ACAAGGCTATATTTGGCGTCTG 58.794 45.455 0.00 0.00 35.01 3.51
849 850 1.884235 AGGCTATATTTGGCGTCTGC 58.116 50.000 0.00 0.00 41.71 4.26
850 851 1.140852 AGGCTATATTTGGCGTCTGCA 59.859 47.619 0.00 0.00 45.35 4.41
851 852 1.946768 GGCTATATTTGGCGTCTGCAA 59.053 47.619 0.00 0.00 45.35 4.08
852 853 2.357637 GGCTATATTTGGCGTCTGCAAA 59.642 45.455 0.00 0.00 45.35 3.68
854 855 4.420168 GCTATATTTGGCGTCTGCAAAAA 58.580 39.130 0.00 0.00 46.69 1.94
925 928 0.817634 CCCACAGCACCAGAACGAAA 60.818 55.000 0.00 0.00 0.00 3.46
929 932 1.608590 ACAGCACCAGAACGAAATTGG 59.391 47.619 0.00 0.00 37.98 3.16
1189 1230 2.366972 CCCCCTCATCCTCCGGTT 60.367 66.667 0.00 0.00 0.00 4.44
1206 1247 0.947244 GTTCTCACAAGCCACCACTG 59.053 55.000 0.00 0.00 0.00 3.66
1211 1252 1.227556 ACAAGCCACCACTGACGAC 60.228 57.895 0.00 0.00 0.00 4.34
1290 1331 4.135153 CCAGTGGCTCCTCGACCG 62.135 72.222 0.00 0.00 0.00 4.79
1517 1955 1.219393 GGCGAGGAGGAGTTCTTGG 59.781 63.158 0.00 0.00 0.00 3.61
1645 2104 0.973496 AGGAAGAAGAGGAGGCGACC 60.973 60.000 0.00 0.00 0.00 4.79
1789 2248 2.649531 TTAACAAGGGTGAGTGGGTG 57.350 50.000 0.00 0.00 0.00 4.61
1857 2322 1.601903 GTTGATCTGTGGTGCGTTTGA 59.398 47.619 0.00 0.00 0.00 2.69
1913 2378 2.832931 CAACGAGAGGTGCTTGGAG 58.167 57.895 0.00 0.00 44.78 3.86
1960 2425 5.048573 GCAAAATCAAGGCATGGTTCAATTT 60.049 36.000 0.00 0.00 28.50 1.82
1967 2432 3.057315 AGGCATGGTTCAATTTCGTCAAG 60.057 43.478 0.00 0.00 0.00 3.02
1980 2445 7.224362 TCAATTTCGTCAAGTTGATTTGCAATT 59.776 29.630 9.18 7.89 39.03 2.32
2027 2519 1.962807 TGGACTTCTGCACCCAAATTG 59.037 47.619 0.00 0.00 0.00 2.32
2042 2534 5.064441 CCAAATTGGGCTCTTTCTGTTAG 57.936 43.478 3.60 0.00 32.67 2.34
2087 2973 6.488683 TGTTAAATACCATTAGTATGCTGCCC 59.511 38.462 0.00 0.00 40.98 5.36
2264 3154 3.489355 TGACCATGGTGCATTGGATATC 58.511 45.455 25.52 3.21 0.00 1.63
2556 3453 6.370433 TCATGACGATGTTTTTGTTCTGAA 57.630 33.333 0.00 0.00 0.00 3.02
2583 3480 5.983333 AGATCCCTAACATCTGTTGGAAT 57.017 39.130 7.87 2.05 38.58 3.01
2584 3481 6.332976 AGATCCCTAACATCTGTTGGAATT 57.667 37.500 7.87 0.00 38.58 2.17
2585 3482 7.451731 AGATCCCTAACATCTGTTGGAATTA 57.548 36.000 7.87 0.00 38.58 1.40
2586 3483 7.512992 AGATCCCTAACATCTGTTGGAATTAG 58.487 38.462 7.87 0.00 38.58 1.73
2587 3484 6.636454 TCCCTAACATCTGTTGGAATTAGT 57.364 37.500 7.87 0.00 38.58 2.24
2588 3485 6.650120 TCCCTAACATCTGTTGGAATTAGTC 58.350 40.000 7.87 0.00 38.58 2.59
2589 3486 6.443849 TCCCTAACATCTGTTGGAATTAGTCT 59.556 38.462 7.87 0.00 38.58 3.24
2592 3489 7.278868 CCTAACATCTGTTGGAATTAGTCTGAC 59.721 40.741 7.87 0.00 38.58 3.51
2593 3490 6.365970 ACATCTGTTGGAATTAGTCTGACT 57.634 37.500 15.57 15.57 0.00 3.41
2594 3491 6.169094 ACATCTGTTGGAATTAGTCTGACTG 58.831 40.000 20.19 1.83 0.00 3.51
2595 3492 4.569943 TCTGTTGGAATTAGTCTGACTGC 58.430 43.478 20.19 6.87 0.00 4.40
2596 3493 3.674997 TGTTGGAATTAGTCTGACTGCC 58.325 45.455 20.19 15.01 0.00 4.85
2598 3495 3.895232 TGGAATTAGTCTGACTGCCTC 57.105 47.619 20.19 12.19 0.00 4.70
2599 3496 3.173151 TGGAATTAGTCTGACTGCCTCA 58.827 45.455 20.19 9.06 0.00 3.86
2717 3614 6.765989 TCGATAATGTTTTCCAAGATCCGAAT 59.234 34.615 0.00 0.00 0.00 3.34
2797 3696 5.656859 TCTGGTATAGAGCTTGACTTTGCTA 59.343 40.000 0.00 0.00 39.91 3.49
2825 3727 2.768253 TGTGGCAGACAACAGGATAG 57.232 50.000 0.00 0.00 0.00 2.08
2826 3728 1.977854 TGTGGCAGACAACAGGATAGT 59.022 47.619 0.00 0.00 0.00 2.12
2827 3729 3.169908 TGTGGCAGACAACAGGATAGTA 58.830 45.455 0.00 0.00 0.00 1.82
2828 3730 3.580895 TGTGGCAGACAACAGGATAGTAA 59.419 43.478 0.00 0.00 0.00 2.24
2999 3905 4.285517 CACCTGGAGGCATATCTCAATAGT 59.714 45.833 0.00 0.00 39.32 2.12
3117 4023 0.972134 TTCCTCTGCTGTGACCTCTG 59.028 55.000 0.00 0.00 0.00 3.35
3137 4043 9.877178 ACCTCTGTGACTATAAATAAGTTCTTG 57.123 33.333 0.00 0.00 0.00 3.02
3271 4177 7.644551 GTCTTGTTGTGTCTAGAACCTATATCG 59.355 40.741 0.00 0.00 29.49 2.92
3299 4205 1.876156 GCTGATATGCAGGTTAGTGGC 59.124 52.381 0.00 0.00 45.03 5.01
3512 6217 8.007716 GCATATATCAAATTTGTGATGCTTTGC 58.992 33.333 25.00 18.04 38.69 3.68
3619 7865 7.865706 TTATAAATCTTTCCTCTTGCAGGTC 57.134 36.000 0.00 0.00 43.95 3.85
3776 8022 8.172352 TGAGAGTATTCTTCCTATAGCTGTTC 57.828 38.462 0.00 0.00 32.53 3.18
3959 10006 5.636837 TGGACGTTTTCTTTGCAATATAGC 58.363 37.500 0.00 0.00 0.00 2.97
3960 10007 5.182190 TGGACGTTTTCTTTGCAATATAGCA 59.818 36.000 0.00 0.00 43.99 3.49
4053 10100 1.702182 TGGCTTCAGGCACAATTTCA 58.298 45.000 0.00 0.00 46.12 2.69
4353 10400 8.261522 GGAAACTATTCTTCTACCTCATCTGTT 58.738 37.037 0.00 0.00 35.79 3.16
4373 10420 0.383949 GCTGGAGATGACGAGTCCTC 59.616 60.000 0.34 0.75 0.00 3.71
4416 10463 2.897326 GGTTGAGCCTGGTTTTGGTATT 59.103 45.455 0.00 0.00 0.00 1.89
4460 10507 7.379750 AGTGGTCAAGAGTACTATGAAAACTC 58.620 38.462 11.34 7.24 39.95 3.01
4539 10591 8.862325 TTTATGATTTTTCTGGCTCTAGTTGA 57.138 30.769 0.00 0.00 0.00 3.18
4693 10745 0.391661 CCCAGTGGATCAAGACACGG 60.392 60.000 11.95 0.24 42.25 4.94
4798 10850 8.936070 ATGTTACAGACGTAATATTGCTACAA 57.064 30.769 0.00 0.00 36.37 2.41
4815 10867 5.655974 TGCTACAATTAATGAAGCCAATCCA 59.344 36.000 12.06 0.00 0.00 3.41
4816 10868 6.324512 TGCTACAATTAATGAAGCCAATCCAT 59.675 34.615 12.06 0.00 0.00 3.41
4817 10869 6.643770 GCTACAATTAATGAAGCCAATCCATG 59.356 38.462 5.91 0.00 0.00 3.66
4833 10891 4.293662 TCCATGTACACATAGGTTTGCA 57.706 40.909 0.00 0.00 34.26 4.08
4837 10895 6.710295 TCCATGTACACATAGGTTTGCATATC 59.290 38.462 0.00 0.00 29.82 1.63
4842 10900 3.250762 CACATAGGTTTGCATATCCGTGG 59.749 47.826 0.00 0.00 0.00 4.94
4865 10923 5.163834 GGTGCATTTTTGTTTGGCTGATATG 60.164 40.000 0.00 0.00 0.00 1.78
4868 10926 5.220529 GCATTTTTGTTTGGCTGATATGAGC 60.221 40.000 5.49 5.49 38.34 4.26
4935 11014 1.202806 CCCATGTTATCGGTGGCTGAT 60.203 52.381 0.00 0.00 33.63 2.90
4936 11015 2.038426 CCCATGTTATCGGTGGCTGATA 59.962 50.000 0.00 0.00 31.33 2.15
4937 11016 3.067106 CCATGTTATCGGTGGCTGATAC 58.933 50.000 0.00 0.00 32.23 2.24
4938 11017 3.244215 CCATGTTATCGGTGGCTGATACT 60.244 47.826 0.00 0.00 32.23 2.12
4939 11018 3.728076 TGTTATCGGTGGCTGATACTC 57.272 47.619 0.00 0.00 32.23 2.59
4940 11019 2.364324 TGTTATCGGTGGCTGATACTCC 59.636 50.000 0.00 0.00 32.23 3.85
4941 11020 1.629043 TATCGGTGGCTGATACTCCC 58.371 55.000 0.00 0.00 31.33 4.30
4942 11021 0.105453 ATCGGTGGCTGATACTCCCT 60.105 55.000 0.00 0.00 0.00 4.20
4943 11022 0.755698 TCGGTGGCTGATACTCCCTC 60.756 60.000 0.00 0.00 0.00 4.30
4944 11023 1.749334 CGGTGGCTGATACTCCCTCC 61.749 65.000 0.00 0.00 0.00 4.30
4945 11024 1.742768 GTGGCTGATACTCCCTCCG 59.257 63.158 0.00 0.00 0.00 4.63
4946 11025 1.043673 GTGGCTGATACTCCCTCCGT 61.044 60.000 0.00 0.00 0.00 4.69
4947 11026 0.755698 TGGCTGATACTCCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
4948 11027 1.465200 GGCTGATACTCCCTCCGTCC 61.465 65.000 0.00 0.00 0.00 4.79
4949 11028 1.797211 GCTGATACTCCCTCCGTCCG 61.797 65.000 0.00 0.00 0.00 4.79
4950 11029 0.179026 CTGATACTCCCTCCGTCCGA 60.179 60.000 0.00 0.00 0.00 4.55
4951 11030 0.256752 TGATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
4952 11031 1.341285 TGATACTCCCTCCGTCCGAAA 60.341 52.381 0.00 0.00 0.00 3.46
4953 11032 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
4954 11033 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
4955 11034 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4956 11035 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4957 11036 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4958 11037 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4959 11038 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4960 11039 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4961 11040 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4962 11041 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4963 11042 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4964 11043 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4965 11044 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4966 11045 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4967 11046 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4968 11047 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4969 11048 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4970 11049 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4971 11050 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
4972 11051 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
4973 11052 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
4981 11060 9.492973 ACTTGTCATCAAAATGAATAAAAAGGG 57.507 29.630 0.00 0.00 43.42 3.95
4982 11061 9.709495 CTTGTCATCAAAATGAATAAAAAGGGA 57.291 29.630 0.00 0.00 43.42 4.20
4984 11063 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
4985 11064 8.606602 GTCATCAAAATGAATAAAAAGGGATGC 58.393 33.333 0.00 0.00 43.42 3.91
4986 11065 8.319881 TCATCAAAATGAATAAAAAGGGATGCA 58.680 29.630 0.00 0.00 38.97 3.96
4987 11066 9.116067 CATCAAAATGAATAAAAAGGGATGCAT 57.884 29.630 0.00 0.00 34.61 3.96
4988 11067 8.721019 TCAAAATGAATAAAAAGGGATGCATC 57.279 30.769 18.81 18.81 0.00 3.91
4989 11068 8.542080 TCAAAATGAATAAAAAGGGATGCATCT 58.458 29.630 25.28 7.83 0.00 2.90
4990 11069 9.820725 CAAAATGAATAAAAAGGGATGCATCTA 57.179 29.630 25.28 9.84 0.00 1.98
4992 11071 9.425248 AAATGAATAAAAAGGGATGCATCTAGA 57.575 29.630 25.28 0.00 0.00 2.43
4993 11072 9.425248 AATGAATAAAAAGGGATGCATCTAGAA 57.575 29.630 25.28 6.39 0.00 2.10
4994 11073 8.225603 TGAATAAAAAGGGATGCATCTAGAAC 57.774 34.615 25.28 8.87 0.00 3.01
4995 11074 8.055181 TGAATAAAAAGGGATGCATCTAGAACT 58.945 33.333 25.28 13.10 0.00 3.01
4996 11075 9.561069 GAATAAAAAGGGATGCATCTAGAACTA 57.439 33.333 25.28 11.47 0.00 2.24
4997 11076 9.566432 AATAAAAAGGGATGCATCTAGAACTAG 57.434 33.333 25.28 2.77 34.56 2.57
4998 11077 6.814954 AAAAGGGATGCATCTAGAACTAGA 57.185 37.500 25.28 12.92 45.24 2.43
4999 11078 6.814954 AAAGGGATGCATCTAGAACTAGAA 57.185 37.500 25.28 0.86 44.44 2.10
5000 11079 7.385894 AAAGGGATGCATCTAGAACTAGAAT 57.614 36.000 25.28 5.25 44.44 2.40
5001 11080 8.497910 AAAGGGATGCATCTAGAACTAGAATA 57.502 34.615 25.28 5.83 44.44 1.75
5002 11081 7.475137 AGGGATGCATCTAGAACTAGAATAC 57.525 40.000 25.28 4.15 44.44 1.89
5003 11082 7.013220 AGGGATGCATCTAGAACTAGAATACA 58.987 38.462 25.28 12.57 44.44 2.29
5004 11083 7.677745 AGGGATGCATCTAGAACTAGAATACAT 59.322 37.037 25.28 15.74 44.44 2.29
5005 11084 7.978975 GGGATGCATCTAGAACTAGAATACATC 59.021 40.741 25.28 24.39 44.44 3.06
5006 11085 8.748412 GGATGCATCTAGAACTAGAATACATCT 58.252 37.037 25.28 12.97 44.44 2.90
5021 11100 8.980832 AGAATACATCTAGATACATCCCCTTT 57.019 34.615 4.54 0.00 36.32 3.11
5022 11101 9.398921 AGAATACATCTAGATACATCCCCTTTT 57.601 33.333 4.54 0.00 36.32 2.27
5027 11106 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
5033 11112 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
5036 11115 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
5037 11116 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
5038 11117 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
5039 11118 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
5040 11119 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
5041 11120 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
5048 11127 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
5049 11128 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
5050 11129 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
5051 11130 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
5052 11131 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
5053 11132 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
5054 11133 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5055 11134 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5056 11135 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5057 11136 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5058 11137 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5059 11138 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5096 11175 5.822204 AGGTATGTGCACCCTTGTTATTTA 58.178 37.500 15.69 0.00 39.62 1.40
5097 11176 5.650703 AGGTATGTGCACCCTTGTTATTTAC 59.349 40.000 15.69 0.00 39.62 2.01
5098 11177 5.650703 GGTATGTGCACCCTTGTTATTTACT 59.349 40.000 15.69 0.00 31.91 2.24
5099 11178 6.152154 GGTATGTGCACCCTTGTTATTTACTT 59.848 38.462 15.69 0.00 31.91 2.24
5100 11179 7.337436 GGTATGTGCACCCTTGTTATTTACTTA 59.663 37.037 15.69 0.00 31.91 2.24
5101 11180 7.954666 ATGTGCACCCTTGTTATTTACTTAT 57.045 32.000 15.69 0.00 0.00 1.73
5102 11181 7.768807 TGTGCACCCTTGTTATTTACTTATT 57.231 32.000 15.69 0.00 0.00 1.40
5103 11182 8.184304 TGTGCACCCTTGTTATTTACTTATTT 57.816 30.769 15.69 0.00 0.00 1.40
5128 11207 1.074926 ACCCAGATCCGAGGAGCAT 60.075 57.895 10.21 0.00 32.23 3.79
5152 11231 6.969043 TCACACCCCAGTTCTTATATTCAAT 58.031 36.000 0.00 0.00 0.00 2.57
5153 11232 8.096621 TCACACCCCAGTTCTTATATTCAATA 57.903 34.615 0.00 0.00 0.00 1.90
5156 11235 9.936329 ACACCCCAGTTCTTATATTCAATAAAT 57.064 29.630 0.00 0.00 0.00 1.40
5243 11323 3.118441 TTTGACGCGCTTTGCTGCA 62.118 52.632 5.73 0.00 43.27 4.41
5252 11332 1.530013 GCTTTGCTGCATCACCTGGT 61.530 55.000 1.84 0.00 0.00 4.00
5327 11407 4.023279 TGTTGCAGCGAGTTGTTGAAATAT 60.023 37.500 0.00 0.00 28.04 1.28
5329 11409 5.119931 TGCAGCGAGTTGTTGAAATATTT 57.880 34.783 0.00 0.00 0.00 1.40
5376 11456 5.390387 AGGTGCAATGTACCCTTTTCTTAA 58.610 37.500 16.84 0.00 39.05 1.85
5377 11457 5.836358 AGGTGCAATGTACCCTTTTCTTAAA 59.164 36.000 16.84 0.00 39.05 1.52
5380 11460 7.042321 GGTGCAATGTACCCTTTTCTTAAAAAC 60.042 37.037 9.47 0.00 31.23 2.43
5395 11475 9.968870 TTTCTTAAAAACTTATTTGTACGGCAT 57.031 25.926 0.00 0.00 0.00 4.40
5468 11550 5.793817 TGGCAGTATAGCTTACCATGTATG 58.206 41.667 0.00 0.00 34.17 2.39
5469 11551 4.631813 GGCAGTATAGCTTACCATGTATGC 59.368 45.833 0.00 4.48 34.17 3.14
5470 11552 5.237815 GCAGTATAGCTTACCATGTATGCA 58.762 41.667 12.71 0.00 0.00 3.96
5471 11553 5.877012 GCAGTATAGCTTACCATGTATGCAT 59.123 40.000 3.79 3.79 35.32 3.96
5472 11554 7.041721 GCAGTATAGCTTACCATGTATGCATA 58.958 38.462 1.16 1.16 33.30 3.14
5473 11555 7.712639 GCAGTATAGCTTACCATGTATGCATAT 59.287 37.037 10.16 0.00 33.30 1.78
5474 11556 9.038803 CAGTATAGCTTACCATGTATGCATATG 57.961 37.037 10.16 6.08 33.30 1.78
5475 11557 6.932356 ATAGCTTACCATGTATGCATATGC 57.068 37.500 21.09 21.09 42.50 3.14
5494 11576 1.146637 CATCTTCGCTATGCAGAGGC 58.853 55.000 10.92 4.40 41.68 4.70
5495 11577 0.034616 ATCTTCGCTATGCAGAGGCC 59.965 55.000 10.92 0.00 40.13 5.19
5496 11578 1.953138 CTTCGCTATGCAGAGGCCG 60.953 63.158 10.92 6.25 40.13 6.13
5497 11579 3.445518 TTCGCTATGCAGAGGCCGG 62.446 63.158 10.92 0.00 40.13 6.13
5498 11580 4.976925 CGCTATGCAGAGGCCGGG 62.977 72.222 10.92 0.00 40.13 5.73
5499 11581 3.866582 GCTATGCAGAGGCCGGGT 61.867 66.667 10.92 0.00 40.13 5.28
5500 11582 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
5501 11583 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
5502 11584 2.257409 CTATGCAGAGGCCGGGTGTT 62.257 60.000 2.18 0.00 40.13 3.32
5503 11585 2.535485 TATGCAGAGGCCGGGTGTTG 62.535 60.000 2.18 0.00 40.13 3.33
5505 11587 4.335647 CAGAGGCCGGGTGTTGCT 62.336 66.667 2.18 0.00 0.00 3.91
5506 11588 4.021925 AGAGGCCGGGTGTTGCTC 62.022 66.667 2.18 0.00 0.00 4.26
5507 11589 4.329545 GAGGCCGGGTGTTGCTCA 62.330 66.667 2.18 0.00 0.00 4.26
5508 11590 3.628646 GAGGCCGGGTGTTGCTCAT 62.629 63.158 2.18 0.00 0.00 2.90
5509 11591 3.134127 GGCCGGGTGTTGCTCATC 61.134 66.667 2.18 0.00 0.00 2.92
5510 11592 2.359850 GCCGGGTGTTGCTCATCA 60.360 61.111 2.18 0.00 0.00 3.07
5511 11593 1.750399 GCCGGGTGTTGCTCATCAT 60.750 57.895 2.18 0.00 0.00 2.45
5512 11594 1.996786 GCCGGGTGTTGCTCATCATG 61.997 60.000 2.18 0.00 0.00 3.07
5513 11595 1.430632 CGGGTGTTGCTCATCATGC 59.569 57.895 0.00 0.00 0.00 4.06
5514 11596 1.028330 CGGGTGTTGCTCATCATGCT 61.028 55.000 0.00 0.00 0.00 3.79
5515 11597 1.180029 GGGTGTTGCTCATCATGCTT 58.820 50.000 0.00 0.00 0.00 3.91
5516 11598 1.547372 GGGTGTTGCTCATCATGCTTT 59.453 47.619 0.00 0.00 0.00 3.51
5517 11599 2.602878 GGTGTTGCTCATCATGCTTTG 58.397 47.619 0.00 0.00 0.00 2.77
5518 11600 2.029649 GGTGTTGCTCATCATGCTTTGT 60.030 45.455 0.00 0.00 0.00 2.83
5519 11601 3.191162 GGTGTTGCTCATCATGCTTTGTA 59.809 43.478 0.00 0.00 0.00 2.41
5520 11602 4.142315 GGTGTTGCTCATCATGCTTTGTAT 60.142 41.667 0.00 0.00 0.00 2.29
5521 11603 5.032863 GTGTTGCTCATCATGCTTTGTATC 58.967 41.667 0.00 0.00 0.00 2.24
5522 11604 4.096833 TGTTGCTCATCATGCTTTGTATCC 59.903 41.667 0.00 0.00 0.00 2.59
5523 11605 2.874086 TGCTCATCATGCTTTGTATCCG 59.126 45.455 0.00 0.00 0.00 4.18
5524 11606 2.350197 GCTCATCATGCTTTGTATCCGC 60.350 50.000 0.00 0.00 0.00 5.54
5525 11607 3.136763 CTCATCATGCTTTGTATCCGCT 58.863 45.455 0.00 0.00 0.00 5.52
5526 11608 3.544684 TCATCATGCTTTGTATCCGCTT 58.455 40.909 0.00 0.00 0.00 4.68
5527 11609 3.313249 TCATCATGCTTTGTATCCGCTTG 59.687 43.478 0.00 0.00 0.00 4.01
5528 11610 2.984562 TCATGCTTTGTATCCGCTTGA 58.015 42.857 0.00 0.00 36.07 3.02
5529 11611 3.544684 TCATGCTTTGTATCCGCTTGAT 58.455 40.909 0.00 0.00 34.31 2.57
5530 11612 3.313249 TCATGCTTTGTATCCGCTTGATG 59.687 43.478 0.00 0.00 34.31 3.07
5531 11613 1.401552 TGCTTTGTATCCGCTTGATGC 59.598 47.619 0.00 0.00 36.68 3.91
5532 11614 1.672881 GCTTTGTATCCGCTTGATGCT 59.327 47.619 3.59 0.00 37.04 3.79
5533 11615 2.872245 GCTTTGTATCCGCTTGATGCTA 59.128 45.455 3.59 0.00 37.04 3.49
5534 11616 3.303395 GCTTTGTATCCGCTTGATGCTAC 60.303 47.826 3.59 0.00 37.04 3.58
5535 11617 3.535280 TTGTATCCGCTTGATGCTACA 57.465 42.857 3.59 0.00 37.04 2.74
5536 11618 3.751479 TGTATCCGCTTGATGCTACAT 57.249 42.857 3.59 0.00 37.04 2.29
5537 11619 4.071961 TGTATCCGCTTGATGCTACATT 57.928 40.909 3.59 0.00 37.04 2.71
5538 11620 4.450976 TGTATCCGCTTGATGCTACATTT 58.549 39.130 3.59 0.00 37.04 2.32
5539 11621 4.881273 TGTATCCGCTTGATGCTACATTTT 59.119 37.500 3.59 0.00 37.04 1.82
5540 11622 3.763097 TCCGCTTGATGCTACATTTTG 57.237 42.857 0.00 0.00 40.11 2.44
5541 11623 3.342719 TCCGCTTGATGCTACATTTTGA 58.657 40.909 0.00 0.00 40.11 2.69
5542 11624 3.374988 TCCGCTTGATGCTACATTTTGAG 59.625 43.478 0.00 0.00 40.11 3.02
5543 11625 3.374988 CCGCTTGATGCTACATTTTGAGA 59.625 43.478 0.00 0.00 40.11 3.27
5544 11626 4.036027 CCGCTTGATGCTACATTTTGAGAT 59.964 41.667 0.00 0.00 40.11 2.75
5545 11627 5.237127 CCGCTTGATGCTACATTTTGAGATA 59.763 40.000 0.00 0.00 40.11 1.98
5546 11628 6.238456 CCGCTTGATGCTACATTTTGAGATAA 60.238 38.462 0.00 0.00 40.11 1.75
5547 11629 7.358066 CGCTTGATGCTACATTTTGAGATAAT 58.642 34.615 0.00 0.00 40.11 1.28
5548 11630 8.498358 CGCTTGATGCTACATTTTGAGATAATA 58.502 33.333 0.00 0.00 40.11 0.98
5554 11636 9.669353 ATGCTACATTTTGAGATAATAAAAGCG 57.331 29.630 0.00 0.00 0.00 4.68
5555 11637 8.673711 TGCTACATTTTGAGATAATAAAAGCGT 58.326 29.630 0.00 0.00 0.00 5.07
5556 11638 9.159470 GCTACATTTTGAGATAATAAAAGCGTC 57.841 33.333 0.00 0.00 0.00 5.19
5557 11639 9.651718 CTACATTTTGAGATAATAAAAGCGTCC 57.348 33.333 0.00 0.00 0.00 4.79
5558 11640 8.281212 ACATTTTGAGATAATAAAAGCGTCCT 57.719 30.769 0.00 0.00 0.00 3.85
5559 11641 8.739972 ACATTTTGAGATAATAAAAGCGTCCTT 58.260 29.630 0.00 0.00 0.00 3.36
5560 11642 9.573133 CATTTTGAGATAATAAAAGCGTCCTTT 57.427 29.630 0.00 0.00 42.93 3.11
5603 11685 8.253113 ACCATATGATTGAATCCTTTTGTTGTC 58.747 33.333 3.65 0.00 0.00 3.18
5657 11739 3.195661 ACGTTCTCTGACAAAACACCTC 58.804 45.455 0.00 0.00 0.00 3.85
5753 11835 8.792830 AGAAAAACTGTAAGATATAGCTTGCA 57.207 30.769 18.52 18.52 38.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
14 15 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
15 16 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
16 17 3.843240 GCTTTCGCGAGAGGCACG 61.843 66.667 25.84 3.72 43.84 5.34
17 18 2.738521 TGCTTTCGCGAGAGGCAC 60.739 61.111 25.84 11.56 42.51 5.01
18 19 2.738521 GTGCTTTCGCGAGAGGCA 60.739 61.111 25.84 23.78 44.13 4.75
19 20 2.317609 TTGTGCTTTCGCGAGAGGC 61.318 57.895 25.84 21.76 43.69 4.70
20 21 1.493311 GTTGTGCTTTCGCGAGAGG 59.507 57.895 25.84 13.55 43.69 3.69
21 22 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
22 23 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
23 24 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
24 25 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
25 26 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
33 34 3.240606 CGCAAGAGGCACGGTTGTG 62.241 63.158 0.00 0.00 45.55 3.33
34 35 2.972505 CGCAAGAGGCACGGTTGT 60.973 61.111 0.00 0.00 45.17 3.32
35 36 3.726517 CCGCAAGAGGCACGGTTG 61.727 66.667 0.00 0.00 45.17 3.77
36 37 3.469863 TTCCGCAAGAGGCACGGTT 62.470 57.895 0.00 0.00 46.92 4.44
37 38 3.883744 CTTCCGCAAGAGGCACGGT 62.884 63.158 0.00 0.00 46.92 4.83
39 40 3.793144 GCTTCCGCAAGAGGCACG 61.793 66.667 0.00 0.00 46.54 5.34
51 52 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
52 53 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
53 54 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
54 55 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
55 56 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
56 57 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
57 58 2.981977 TTCGCGAGAGGCACGGTTTT 62.982 55.000 9.59 0.00 43.84 2.43
58 59 2.981977 TTTCGCGAGAGGCACGGTTT 62.982 55.000 9.59 0.00 43.84 3.27
59 60 2.981977 TTTTCGCGAGAGGCACGGTT 62.982 55.000 9.59 0.00 43.84 4.44
60 61 2.981977 TTTTTCGCGAGAGGCACGGT 62.982 55.000 9.59 0.00 43.84 4.83
61 62 2.314647 TTTTTCGCGAGAGGCACGG 61.315 57.895 9.59 0.00 43.84 4.94
62 63 3.240203 TTTTTCGCGAGAGGCACG 58.760 55.556 9.59 0.00 43.84 5.34
96 97 3.702045 TGCCTCTTTCGAAAAGGGAAAAA 59.298 39.130 26.39 11.98 33.37 1.94
97 98 3.067601 GTGCCTCTTTCGAAAAGGGAAAA 59.932 43.478 26.39 13.63 33.37 2.29
98 99 2.621526 GTGCCTCTTTCGAAAAGGGAAA 59.378 45.455 26.39 15.30 31.86 3.13
99 100 2.227194 GTGCCTCTTTCGAAAAGGGAA 58.773 47.619 26.39 17.78 31.86 3.97
100 101 1.876416 CGTGCCTCTTTCGAAAAGGGA 60.876 52.381 26.39 23.76 0.00 4.20
101 102 0.517316 CGTGCCTCTTTCGAAAAGGG 59.483 55.000 26.39 22.92 0.00 3.95
102 103 0.110192 GCGTGCCTCTTTCGAAAAGG 60.110 55.000 23.60 23.60 0.00 3.11
103 104 0.110192 GGCGTGCCTCTTTCGAAAAG 60.110 55.000 12.41 11.57 0.00 2.27
104 105 1.512156 GGGCGTGCCTCTTTCGAAAA 61.512 55.000 12.41 2.66 36.10 2.29
105 106 1.964373 GGGCGTGCCTCTTTCGAAA 60.964 57.895 10.71 10.71 36.10 3.46
106 107 2.358247 GGGCGTGCCTCTTTCGAA 60.358 61.111 11.25 0.00 36.10 3.71
107 108 4.735132 CGGGCGTGCCTCTTTCGA 62.735 66.667 11.25 0.00 36.10 3.71
109 110 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
121 122 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
122 123 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
123 124 1.282248 TTTCTTTCGCGAGAGGCACG 61.282 55.000 24.53 1.69 43.84 5.34
124 125 0.865769 TTTTCTTTCGCGAGAGGCAC 59.134 50.000 24.53 0.00 43.84 5.01
125 126 1.588674 TTTTTCTTTCGCGAGAGGCA 58.411 45.000 24.53 10.58 43.84 4.75
506 507 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
507 508 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
508 509 0.249155 TTTTCGCGAGAGTCACGGTT 60.249 50.000 9.59 0.00 43.69 4.44
509 510 0.249155 TTTTTCGCGAGAGTCACGGT 60.249 50.000 9.59 0.00 43.69 4.83
510 511 2.513159 TTTTTCGCGAGAGTCACGG 58.487 52.632 9.59 2.55 43.69 4.94
573 574 5.303333 TCCCTAGCTTTTCGACCAAATTTTT 59.697 36.000 0.00 0.00 0.00 1.94
574 575 4.830600 TCCCTAGCTTTTCGACCAAATTTT 59.169 37.500 0.00 0.00 0.00 1.82
575 576 4.403734 TCCCTAGCTTTTCGACCAAATTT 58.596 39.130 0.00 0.00 0.00 1.82
576 577 4.028993 TCCCTAGCTTTTCGACCAAATT 57.971 40.909 0.00 0.00 0.00 1.82
577 578 3.713826 TCCCTAGCTTTTCGACCAAAT 57.286 42.857 0.00 0.00 0.00 2.32
578 579 3.071892 TCTTCCCTAGCTTTTCGACCAAA 59.928 43.478 0.00 0.00 0.00 3.28
579 580 2.635915 TCTTCCCTAGCTTTTCGACCAA 59.364 45.455 0.00 0.00 0.00 3.67
580 581 2.028385 GTCTTCCCTAGCTTTTCGACCA 60.028 50.000 0.00 0.00 0.00 4.02
581 582 2.619147 GTCTTCCCTAGCTTTTCGACC 58.381 52.381 0.00 0.00 0.00 4.79
582 583 2.619147 GGTCTTCCCTAGCTTTTCGAC 58.381 52.381 0.00 0.00 0.00 4.20
583 584 1.203994 CGGTCTTCCCTAGCTTTTCGA 59.796 52.381 0.00 0.00 0.00 3.71
584 585 1.203994 TCGGTCTTCCCTAGCTTTTCG 59.796 52.381 0.00 0.00 0.00 3.46
585 586 3.545366 ATCGGTCTTCCCTAGCTTTTC 57.455 47.619 0.00 0.00 0.00 2.29
586 587 4.287552 TCTATCGGTCTTCCCTAGCTTTT 58.712 43.478 0.00 0.00 0.00 2.27
587 588 3.912248 TCTATCGGTCTTCCCTAGCTTT 58.088 45.455 0.00 0.00 0.00 3.51
588 589 3.596940 TCTATCGGTCTTCCCTAGCTT 57.403 47.619 0.00 0.00 0.00 3.74
589 590 3.596940 TTCTATCGGTCTTCCCTAGCT 57.403 47.619 0.00 0.00 0.00 3.32
590 591 4.370049 GTTTTCTATCGGTCTTCCCTAGC 58.630 47.826 0.00 0.00 0.00 3.42
591 592 4.404715 TGGTTTTCTATCGGTCTTCCCTAG 59.595 45.833 0.00 0.00 0.00 3.02
592 593 4.355549 TGGTTTTCTATCGGTCTTCCCTA 58.644 43.478 0.00 0.00 0.00 3.53
593 594 3.178865 TGGTTTTCTATCGGTCTTCCCT 58.821 45.455 0.00 0.00 0.00 4.20
594 595 3.622166 TGGTTTTCTATCGGTCTTCCC 57.378 47.619 0.00 0.00 0.00 3.97
595 596 5.616204 CGTTTTGGTTTTCTATCGGTCTTCC 60.616 44.000 0.00 0.00 0.00 3.46
596 597 5.049886 ACGTTTTGGTTTTCTATCGGTCTTC 60.050 40.000 0.00 0.00 0.00 2.87
597 598 4.818005 ACGTTTTGGTTTTCTATCGGTCTT 59.182 37.500 0.00 0.00 0.00 3.01
598 599 4.383173 ACGTTTTGGTTTTCTATCGGTCT 58.617 39.130 0.00 0.00 0.00 3.85
599 600 4.211794 TGACGTTTTGGTTTTCTATCGGTC 59.788 41.667 0.00 0.00 0.00 4.79
600 601 4.128643 TGACGTTTTGGTTTTCTATCGGT 58.871 39.130 0.00 0.00 0.00 4.69
601 602 4.735662 TGACGTTTTGGTTTTCTATCGG 57.264 40.909 0.00 0.00 0.00 4.18
602 603 7.439204 TTTTTGACGTTTTGGTTTTCTATCG 57.561 32.000 0.00 0.00 0.00 2.92
636 637 6.305639 GTTTTCGGCTTTTTAAACGGTTTTT 58.694 32.000 11.87 0.00 0.00 1.94
637 638 5.444350 CGTTTTCGGCTTTTTAAACGGTTTT 60.444 36.000 11.87 0.00 45.26 2.43
638 639 4.031539 CGTTTTCGGCTTTTTAAACGGTTT 59.968 37.500 11.33 11.33 45.26 3.27
639 640 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
640 641 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
641 642 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
681 682 4.507756 GCGCTCCTTCTGAATTTTGTTTTT 59.492 37.500 0.00 0.00 0.00 1.94
682 683 4.051237 GCGCTCCTTCTGAATTTTGTTTT 58.949 39.130 0.00 0.00 0.00 2.43
683 684 3.552890 GGCGCTCCTTCTGAATTTTGTTT 60.553 43.478 7.64 0.00 0.00 2.83
684 685 2.029918 GGCGCTCCTTCTGAATTTTGTT 60.030 45.455 7.64 0.00 0.00 2.83
685 686 1.541588 GGCGCTCCTTCTGAATTTTGT 59.458 47.619 7.64 0.00 0.00 2.83
686 687 1.135286 GGGCGCTCCTTCTGAATTTTG 60.135 52.381 7.64 0.00 0.00 2.44
687 688 1.177401 GGGCGCTCCTTCTGAATTTT 58.823 50.000 7.64 0.00 0.00 1.82
688 689 0.038166 TGGGCGCTCCTTCTGAATTT 59.962 50.000 3.94 0.00 36.20 1.82
689 690 0.393537 CTGGGCGCTCCTTCTGAATT 60.394 55.000 3.94 0.00 36.20 2.17
690 691 1.222936 CTGGGCGCTCCTTCTGAAT 59.777 57.895 3.94 0.00 36.20 2.57
691 692 1.892819 CTCTGGGCGCTCCTTCTGAA 61.893 60.000 3.94 0.00 36.20 3.02
692 693 2.283894 TCTGGGCGCTCCTTCTGA 60.284 61.111 3.94 1.15 36.20 3.27
693 694 2.186384 CTCTGGGCGCTCCTTCTG 59.814 66.667 3.94 0.00 36.20 3.02
694 695 3.780173 GCTCTGGGCGCTCCTTCT 61.780 66.667 3.94 0.00 36.20 2.85
712 713 2.860293 CCATTCGCCACGTGTCAC 59.140 61.111 15.65 2.48 0.00 3.67
713 714 3.047280 GCCATTCGCCACGTGTCA 61.047 61.111 15.65 0.00 0.00 3.58
714 715 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
715 716 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
716 717 3.049674 ACAGCCATTCGCCACGTG 61.050 61.111 9.08 9.08 38.78 4.49
717 718 3.049674 CACAGCCATTCGCCACGT 61.050 61.111 0.00 0.00 38.78 4.49
718 719 2.741985 TCACAGCCATTCGCCACG 60.742 61.111 0.00 0.00 38.78 4.94
719 720 3.044059 GCTCACAGCCATTCGCCAC 62.044 63.158 0.00 0.00 38.78 5.01
720 721 2.747460 GCTCACAGCCATTCGCCA 60.747 61.111 0.00 0.00 38.78 5.69
721 722 3.869272 CGCTCACAGCCATTCGCC 61.869 66.667 0.00 0.00 38.18 5.54
722 723 4.527157 GCGCTCACAGCCATTCGC 62.527 66.667 0.00 0.00 38.18 4.70
723 724 4.214383 CGCGCTCACAGCCATTCG 62.214 66.667 5.56 0.00 38.18 3.34
724 725 4.527157 GCGCGCTCACAGCCATTC 62.527 66.667 26.67 0.00 38.18 2.67
729 730 4.107051 AATTGGCGCGCTCACAGC 62.107 61.111 32.29 13.79 38.02 4.40
730 731 2.202388 CAATTGGCGCGCTCACAG 60.202 61.111 32.29 14.73 0.00 3.66
731 732 3.736100 CCAATTGGCGCGCTCACA 61.736 61.111 32.29 18.24 0.00 3.58
741 742 0.523968 CAACGATCAGCGCCAATTGG 60.524 55.000 20.81 20.81 46.04 3.16
742 743 0.168788 ACAACGATCAGCGCCAATTG 59.831 50.000 2.29 4.38 46.04 2.32
743 744 0.168788 CACAACGATCAGCGCCAATT 59.831 50.000 2.29 0.00 46.04 2.32
744 745 0.673333 TCACAACGATCAGCGCCAAT 60.673 50.000 2.29 0.00 46.04 3.16
745 746 1.291184 CTCACAACGATCAGCGCCAA 61.291 55.000 2.29 0.00 46.04 4.52
746 747 1.737735 CTCACAACGATCAGCGCCA 60.738 57.895 2.29 0.00 46.04 5.69
747 748 2.456119 CCTCACAACGATCAGCGCC 61.456 63.158 2.29 0.00 46.04 6.53
748 749 3.084579 CCTCACAACGATCAGCGC 58.915 61.111 0.00 0.00 46.04 5.92
750 751 1.086634 GGAGCCTCACAACGATCAGC 61.087 60.000 0.00 0.00 0.00 4.26
751 752 0.460987 GGGAGCCTCACAACGATCAG 60.461 60.000 0.00 0.00 0.00 2.90
752 753 1.596934 GGGAGCCTCACAACGATCA 59.403 57.895 0.00 0.00 0.00 2.92
753 754 1.519455 CGGGAGCCTCACAACGATC 60.519 63.158 0.00 0.00 0.00 3.69
754 755 1.541310 TTCGGGAGCCTCACAACGAT 61.541 55.000 0.00 0.00 0.00 3.73
755 756 2.154798 CTTCGGGAGCCTCACAACGA 62.155 60.000 0.00 0.00 0.00 3.85
756 757 1.738099 CTTCGGGAGCCTCACAACG 60.738 63.158 0.00 0.00 0.00 4.10
757 758 1.376037 CCTTCGGGAGCCTCACAAC 60.376 63.158 0.00 0.00 37.25 3.32
758 759 1.535444 TCCTTCGGGAGCCTCACAA 60.535 57.895 0.00 0.00 39.58 3.33
759 760 2.119611 TCCTTCGGGAGCCTCACA 59.880 61.111 0.00 0.00 39.58 3.58
768 769 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
769 770 0.527817 ATTAACGAGCGCTCCTTCGG 60.528 55.000 30.66 18.71 0.00 4.30
770 771 1.278238 AATTAACGAGCGCTCCTTCG 58.722 50.000 30.66 22.24 0.00 3.79
771 772 3.445857 ACTAATTAACGAGCGCTCCTTC 58.554 45.455 30.66 8.16 0.00 3.46
772 773 3.521947 ACTAATTAACGAGCGCTCCTT 57.478 42.857 30.66 26.03 0.00 3.36
773 774 3.187700 CAACTAATTAACGAGCGCTCCT 58.812 45.455 30.66 20.33 0.00 3.69
774 775 2.285660 GCAACTAATTAACGAGCGCTCC 60.286 50.000 30.66 13.79 0.00 4.70
775 776 2.603560 AGCAACTAATTAACGAGCGCTC 59.396 45.455 27.64 27.64 0.00 5.03
776 777 2.603560 GAGCAACTAATTAACGAGCGCT 59.396 45.455 11.27 11.27 0.00 5.92
777 778 2.603560 AGAGCAACTAATTAACGAGCGC 59.396 45.455 0.00 0.00 0.00 5.92
778 779 4.086227 CGTAGAGCAACTAATTAACGAGCG 60.086 45.833 0.00 0.00 32.49 5.03
779 780 4.797349 ACGTAGAGCAACTAATTAACGAGC 59.203 41.667 8.57 1.16 32.24 5.03
780 781 7.959718 TTACGTAGAGCAACTAATTAACGAG 57.040 36.000 8.57 0.00 32.24 4.18
781 782 8.800972 CATTTACGTAGAGCAACTAATTAACGA 58.199 33.333 8.57 0.00 32.24 3.85
782 783 8.589629 ACATTTACGTAGAGCAACTAATTAACG 58.410 33.333 0.00 1.61 33.51 3.18
787 788 9.811995 TGAATACATTTACGTAGAGCAACTAAT 57.188 29.630 0.00 0.00 32.49 1.73
788 789 9.297586 CTGAATACATTTACGTAGAGCAACTAA 57.702 33.333 0.00 0.00 32.49 2.24
789 790 8.464404 ACTGAATACATTTACGTAGAGCAACTA 58.536 33.333 0.00 0.00 0.00 2.24
790 791 7.321153 ACTGAATACATTTACGTAGAGCAACT 58.679 34.615 0.00 0.00 0.00 3.16
791 792 7.521509 ACTGAATACATTTACGTAGAGCAAC 57.478 36.000 0.00 0.00 0.00 4.17
792 793 8.542497 AAACTGAATACATTTACGTAGAGCAA 57.458 30.769 0.00 0.00 0.00 3.91
793 794 9.297586 CTAAACTGAATACATTTACGTAGAGCA 57.702 33.333 0.00 0.00 0.00 4.26
794 795 8.267367 GCTAAACTGAATACATTTACGTAGAGC 58.733 37.037 0.00 0.00 0.00 4.09
795 796 9.297586 TGCTAAACTGAATACATTTACGTAGAG 57.702 33.333 0.00 0.00 0.00 2.43
796 797 9.811995 ATGCTAAACTGAATACATTTACGTAGA 57.188 29.630 0.00 0.00 0.00 2.59
829 830 2.222027 GCAGACGCCAAATATAGCCTT 58.778 47.619 0.00 0.00 0.00 4.35
830 831 1.140852 TGCAGACGCCAAATATAGCCT 59.859 47.619 0.00 0.00 37.32 4.58
831 832 1.593196 TGCAGACGCCAAATATAGCC 58.407 50.000 0.00 0.00 37.32 3.93
832 833 3.691049 TTTGCAGACGCCAAATATAGC 57.309 42.857 0.00 0.00 37.32 2.97
916 918 4.700213 ACCAGAATACCCAATTTCGTTCTG 59.300 41.667 6.06 6.06 41.16 3.02
917 919 4.918588 ACCAGAATACCCAATTTCGTTCT 58.081 39.130 0.00 0.00 0.00 3.01
925 928 5.255397 TGAAGACAACCAGAATACCCAAT 57.745 39.130 0.00 0.00 0.00 3.16
929 932 4.640647 GGGATTGAAGACAACCAGAATACC 59.359 45.833 0.00 0.00 38.90 2.73
1189 1230 0.106708 GTCAGTGGTGGCTTGTGAGA 59.893 55.000 0.00 0.00 0.00 3.27
1206 1247 3.462678 GGGGGAGGCTGAGTCGTC 61.463 72.222 0.00 0.00 0.00 4.20
1243 1284 2.836262 CAGATGATGCTGAGGGTCTTC 58.164 52.381 0.00 0.00 38.14 2.87
1517 1955 0.441533 TCGCTCTCGTACTCGTCAAC 59.558 55.000 0.00 0.00 38.33 3.18
1583 2021 2.358247 GCTACCACCACCACCACG 60.358 66.667 0.00 0.00 0.00 4.94
1789 2248 8.779354 ACTAGAAGAACAAAGATAACCACATC 57.221 34.615 0.00 0.00 0.00 3.06
1857 2322 2.753452 CCAGCTTCTGAACATCTGCAAT 59.247 45.455 0.00 0.00 32.44 3.56
1913 2378 3.048501 GCTCTTCTTGTTCTTTTGCAGC 58.951 45.455 0.00 0.00 0.00 5.25
1960 2425 5.008514 TGAGAATTGCAAATCAACTTGACGA 59.991 36.000 16.58 0.00 37.53 4.20
1967 2432 4.553323 ACAGCTGAGAATTGCAAATCAAC 58.447 39.130 23.35 10.28 37.53 3.18
1980 2445 9.360901 AGATAATATCTAACAGAACAGCTGAGA 57.639 33.333 23.35 11.24 41.76 3.27
2027 2519 8.778358 CATACAAATATCTAACAGAAAGAGCCC 58.222 37.037 0.00 0.00 0.00 5.19
2038 2530 7.067008 ACAACCCAGCACATACAAATATCTAAC 59.933 37.037 0.00 0.00 0.00 2.34
2039 2531 7.116075 ACAACCCAGCACATACAAATATCTAA 58.884 34.615 0.00 0.00 0.00 2.10
2040 2532 6.658849 ACAACCCAGCACATACAAATATCTA 58.341 36.000 0.00 0.00 0.00 1.98
2042 2534 5.835113 ACAACCCAGCACATACAAATATC 57.165 39.130 0.00 0.00 0.00 1.63
2195 3085 6.425114 TCTGCAGACTTCTGTTTCTTAACATC 59.575 38.462 13.74 0.00 45.45 3.06
2264 3154 2.230992 TCCAATTTGTGCCAAATCCTCG 59.769 45.455 11.87 4.21 0.00 4.63
2556 3453 6.846505 TCCAACAGATGTTAGGGATCTAGAAT 59.153 38.462 0.00 0.00 36.32 2.40
2589 3486 1.002430 GTCACAATCCTGAGGCAGTCA 59.998 52.381 0.00 0.00 0.00 3.41
2592 3489 1.364626 GCGTCACAATCCTGAGGCAG 61.365 60.000 8.57 0.00 46.62 4.85
2593 3490 1.375908 GCGTCACAATCCTGAGGCA 60.376 57.895 8.57 0.00 46.62 4.75
2594 3491 3.490890 GCGTCACAATCCTGAGGC 58.509 61.111 0.00 0.00 42.87 4.70
2595 3492 1.134580 AGATGCGTCACAATCCTGAGG 60.135 52.381 8.99 0.00 0.00 3.86
2596 3493 2.200067 GAGATGCGTCACAATCCTGAG 58.800 52.381 8.99 0.00 0.00 3.35
2598 3495 2.014335 TGAGATGCGTCACAATCCTG 57.986 50.000 8.99 0.00 0.00 3.86
2599 3496 2.996249 ATGAGATGCGTCACAATCCT 57.004 45.000 10.18 0.00 0.00 3.24
2681 3578 6.128282 GGAAAACATTATCGAAAGTGCAGAGA 60.128 38.462 0.00 0.00 0.00 3.10
2717 3614 7.286316 GGTAAACCTACTTACAGCACCTCTATA 59.714 40.741 0.00 0.00 34.10 1.31
2753 3652 8.934023 ACCAGAAAATTCTCTTTGGTTATGTA 57.066 30.769 0.00 0.00 34.74 2.29
2769 3668 7.148171 GCAAAGTCAAGCTCTATACCAGAAAAT 60.148 37.037 0.00 0.00 31.12 1.82
2797 3696 1.832883 TGTCTGCCACAACACAACTT 58.167 45.000 0.00 0.00 29.30 2.66
2879 3783 9.102757 ACAGTCAGTTCATTTGCTAACTATATG 57.897 33.333 0.00 0.00 34.23 1.78
3137 4043 9.706691 TTTATGTTATCGATATCAAGGGAGAAC 57.293 33.333 17.67 6.81 32.76 3.01
3299 4205 7.543868 TCGGTGAAAAATAATTTGTTGGCATAG 59.456 33.333 0.00 0.00 0.00 2.23
3959 10006 7.125792 ACTATTCCCTCTGGTACTATTGTTG 57.874 40.000 0.00 0.00 0.00 3.33
3960 10007 8.066247 ACTACTATTCCCTCTGGTACTATTGTT 58.934 37.037 0.00 0.00 0.00 2.83
4053 10100 6.483640 ACACGTGCTTCTTCTTAGAAATCTTT 59.516 34.615 17.22 0.00 39.80 2.52
4239 10286 1.286501 CACAACGACCCATACCATCG 58.713 55.000 0.00 0.00 41.60 3.84
4353 10400 0.323816 AGGACTCGTCATCTCCAGCA 60.324 55.000 0.00 0.00 0.00 4.41
4373 10420 1.493950 GCATTCATCGTCCCTGCTCG 61.494 60.000 0.00 0.00 0.00 5.03
4380 10427 2.083774 TCAACCTTGCATTCATCGTCC 58.916 47.619 0.00 0.00 0.00 4.79
4416 10463 5.605488 ACCACTTTTACCACTCTTCCTTAGA 59.395 40.000 0.00 0.00 0.00 2.10
4460 10507 2.159352 TGATTCACGGCTTTCATGCATG 60.159 45.455 21.07 21.07 34.04 4.06
4526 10573 5.592054 TCATCGTTTATCAACTAGAGCCAG 58.408 41.667 0.00 0.00 0.00 4.85
4539 10591 6.423302 TGCAAGCAAATTTGTTCATCGTTTAT 59.577 30.769 19.03 0.00 0.00 1.40
4714 10766 3.065371 GCAACAATCTATGAACTTCCCCG 59.935 47.826 0.00 0.00 0.00 5.73
4798 10850 6.606796 TGTGTACATGGATTGGCTTCATTAAT 59.393 34.615 0.00 0.00 0.00 1.40
4812 10864 4.293662 TGCAAACCTATGTGTACATGGA 57.706 40.909 9.58 0.00 37.04 3.41
4815 10867 5.700832 CGGATATGCAAACCTATGTGTACAT 59.299 40.000 0.00 2.75 40.22 2.29
4816 10868 5.053811 CGGATATGCAAACCTATGTGTACA 58.946 41.667 0.00 0.00 0.00 2.90
4817 10869 5.050363 CACGGATATGCAAACCTATGTGTAC 60.050 44.000 0.00 0.00 0.00 2.90
4833 10891 4.799564 AACAAAAATGCACCACGGATAT 57.200 36.364 0.00 0.00 0.00 1.63
4837 10895 1.596727 CCAAACAAAAATGCACCACGG 59.403 47.619 0.00 0.00 0.00 4.94
4842 10900 5.638657 TCATATCAGCCAAACAAAAATGCAC 59.361 36.000 0.00 0.00 0.00 4.57
4935 11014 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
4936 11015 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4937 11016 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4938 11017 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4939 11018 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4940 11019 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4941 11020 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4942 11021 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4943 11022 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4944 11023 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4945 11024 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
4946 11025 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
4947 11026 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
4955 11034 9.492973 CCCTTTTTATTCATTTTGATGACAAGT 57.507 29.630 0.00 0.00 37.32 3.16
4956 11035 9.709495 TCCCTTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
4958 11037 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
4959 11038 8.606602 GCATCCCTTTTTATTCATTTTGATGAC 58.393 33.333 0.00 0.00 0.00 3.06
4960 11039 8.319881 TGCATCCCTTTTTATTCATTTTGATGA 58.680 29.630 0.00 0.00 0.00 2.92
4961 11040 8.495361 TGCATCCCTTTTTATTCATTTTGATG 57.505 30.769 0.00 0.00 0.00 3.07
4962 11041 9.333724 GATGCATCCCTTTTTATTCATTTTGAT 57.666 29.630 16.23 0.00 0.00 2.57
4963 11042 8.542080 AGATGCATCCCTTTTTATTCATTTTGA 58.458 29.630 23.06 0.00 0.00 2.69
4964 11043 8.726870 AGATGCATCCCTTTTTATTCATTTTG 57.273 30.769 23.06 0.00 0.00 2.44
4966 11045 9.425248 TCTAGATGCATCCCTTTTTATTCATTT 57.575 29.630 23.06 1.25 0.00 2.32
4967 11046 9.425248 TTCTAGATGCATCCCTTTTTATTCATT 57.575 29.630 23.06 1.91 0.00 2.57
4968 11047 8.854117 GTTCTAGATGCATCCCTTTTTATTCAT 58.146 33.333 23.06 2.35 0.00 2.57
4969 11048 8.055181 AGTTCTAGATGCATCCCTTTTTATTCA 58.945 33.333 23.06 0.00 0.00 2.57
4970 11049 8.457238 AGTTCTAGATGCATCCCTTTTTATTC 57.543 34.615 23.06 4.27 0.00 1.75
4971 11050 9.566432 CTAGTTCTAGATGCATCCCTTTTTATT 57.434 33.333 23.06 3.84 0.00 1.40
4972 11051 8.938883 TCTAGTTCTAGATGCATCCCTTTTTAT 58.061 33.333 23.06 4.58 0.00 1.40
4973 11052 8.319057 TCTAGTTCTAGATGCATCCCTTTTTA 57.681 34.615 23.06 6.97 0.00 1.52
4974 11053 7.200434 TCTAGTTCTAGATGCATCCCTTTTT 57.800 36.000 23.06 6.10 0.00 1.94
4975 11054 6.814954 TCTAGTTCTAGATGCATCCCTTTT 57.185 37.500 23.06 6.85 0.00 2.27
4976 11055 6.814954 TTCTAGTTCTAGATGCATCCCTTT 57.185 37.500 23.06 7.24 0.00 3.11
4977 11056 7.510685 TGTATTCTAGTTCTAGATGCATCCCTT 59.489 37.037 23.06 7.62 0.00 3.95
4978 11057 7.013220 TGTATTCTAGTTCTAGATGCATCCCT 58.987 38.462 23.06 13.01 0.00 4.20
4979 11058 7.233389 TGTATTCTAGTTCTAGATGCATCCC 57.767 40.000 23.06 6.46 0.00 3.85
4980 11059 8.748412 AGATGTATTCTAGTTCTAGATGCATCC 58.252 37.037 23.06 7.42 33.25 3.51
4996 11075 8.980832 AAAGGGGATGTATCTAGATGTATTCT 57.019 34.615 15.79 6.22 38.57 2.40
5001 11080 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
5007 11086 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
5010 11089 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
5011 11090 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
5012 11091 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
5013 11092 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
5014 11093 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
5015 11094 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
5023 11102 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
5024 11103 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
5025 11104 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
5026 11105 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
5027 11106 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
5028 11107 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
5029 11108 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
5030 11109 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
5031 11110 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
5032 11111 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
5033 11112 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
5034 11113 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5035 11114 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5036 11115 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5037 11116 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5038 11117 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5039 11118 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5040 11119 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5041 11120 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5042 11121 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5043 11122 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5044 11123 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
5045 11124 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
5046 11125 1.152819 TGATACTCCCTCCGTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
5047 11126 0.465824 ACTGATACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
5048 11127 1.777941 AACTGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
5049 11128 2.622470 GGTAACTGATACTCCCTCCGTC 59.378 54.545 0.00 0.00 34.74 4.79
5050 11129 2.664015 GGTAACTGATACTCCCTCCGT 58.336 52.381 0.00 0.00 34.74 4.69
5051 11130 1.607628 CGGTAACTGATACTCCCTCCG 59.392 57.143 0.00 0.00 34.74 4.63
5052 11131 2.941480 TCGGTAACTGATACTCCCTCC 58.059 52.381 0.00 0.00 34.74 4.30
5053 11132 3.318557 CCTTCGGTAACTGATACTCCCTC 59.681 52.174 0.00 0.00 34.74 4.30
5054 11133 3.297736 CCTTCGGTAACTGATACTCCCT 58.702 50.000 0.00 0.00 34.74 4.20
5055 11134 3.029570 ACCTTCGGTAACTGATACTCCC 58.970 50.000 0.00 0.00 32.11 4.30
5056 11135 5.301298 ACATACCTTCGGTAACTGATACTCC 59.699 44.000 0.00 0.00 41.85 3.85
5057 11136 6.207213 CACATACCTTCGGTAACTGATACTC 58.793 44.000 0.00 0.00 41.85 2.59
5058 11137 5.451520 GCACATACCTTCGGTAACTGATACT 60.452 44.000 0.00 0.00 41.85 2.12
5059 11138 4.743644 GCACATACCTTCGGTAACTGATAC 59.256 45.833 0.00 0.00 41.85 2.24
5087 11166 8.586744 GGGTGTGGGAAAATAAGTAAATAACAA 58.413 33.333 0.00 0.00 0.00 2.83
5096 11175 4.569865 GGATCTGGGTGTGGGAAAATAAGT 60.570 45.833 0.00 0.00 0.00 2.24
5097 11176 3.954258 GGATCTGGGTGTGGGAAAATAAG 59.046 47.826 0.00 0.00 0.00 1.73
5098 11177 3.623703 CGGATCTGGGTGTGGGAAAATAA 60.624 47.826 0.00 0.00 0.00 1.40
5099 11178 2.092646 CGGATCTGGGTGTGGGAAAATA 60.093 50.000 0.00 0.00 0.00 1.40
5100 11179 1.340991 CGGATCTGGGTGTGGGAAAAT 60.341 52.381 0.00 0.00 0.00 1.82
5101 11180 0.037590 CGGATCTGGGTGTGGGAAAA 59.962 55.000 0.00 0.00 0.00 2.29
5102 11181 0.838554 TCGGATCTGGGTGTGGGAAA 60.839 55.000 0.62 0.00 0.00 3.13
5103 11182 1.229368 TCGGATCTGGGTGTGGGAA 60.229 57.895 0.62 0.00 0.00 3.97
5128 11207 6.381498 TTGAATATAAGAACTGGGGTGTGA 57.619 37.500 0.00 0.00 0.00 3.58
5156 11235 7.975616 GCAGCAGATTATCATGTTTCCTTTAAA 59.024 33.333 0.00 0.00 0.00 1.52
5348 11428 2.557869 AGGGTACATTGCACCTCCTAA 58.442 47.619 6.03 0.00 36.25 2.69
5350 11430 1.372501 AAGGGTACATTGCACCTCCT 58.627 50.000 6.03 0.00 36.25 3.69
5376 11456 5.918011 CACACATGCCGTACAAATAAGTTTT 59.082 36.000 0.00 0.00 0.00 2.43
5377 11457 5.457140 CACACATGCCGTACAAATAAGTTT 58.543 37.500 0.00 0.00 0.00 2.66
5380 11460 3.425404 GCACACATGCCGTACAAATAAG 58.575 45.455 0.00 0.00 46.97 1.73
5395 11475 0.107263 TGAAGGTTGCTCAGCACACA 60.107 50.000 0.00 0.00 38.71 3.72
5446 11526 4.631813 GCATACATGGTAAGCTATACTGCC 59.368 45.833 0.00 0.00 0.00 4.85
5475 11557 1.146637 GCCTCTGCATAGCGAAGATG 58.853 55.000 0.00 0.00 37.47 2.90
5476 11558 0.034616 GGCCTCTGCATAGCGAAGAT 59.965 55.000 0.00 0.00 40.13 2.40
5477 11559 1.443407 GGCCTCTGCATAGCGAAGA 59.557 57.895 0.00 0.00 40.13 2.87
5478 11560 1.953138 CGGCCTCTGCATAGCGAAG 60.953 63.158 0.00 0.00 40.13 3.79
5479 11561 2.106938 CGGCCTCTGCATAGCGAA 59.893 61.111 0.00 0.00 40.13 4.70
5480 11562 3.916544 CCGGCCTCTGCATAGCGA 61.917 66.667 0.00 0.00 40.13 4.93
5481 11563 4.976925 CCCGGCCTCTGCATAGCG 62.977 72.222 0.00 0.00 40.13 4.26
5482 11564 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
5483 11565 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
5484 11566 2.297895 AACACCCGGCCTCTGCATA 61.298 57.895 0.00 0.00 40.13 3.14
5485 11567 3.650950 AACACCCGGCCTCTGCAT 61.651 61.111 0.00 0.00 40.13 3.96
5486 11568 4.641645 CAACACCCGGCCTCTGCA 62.642 66.667 0.00 0.00 40.13 4.41
5488 11570 4.335647 AGCAACACCCGGCCTCTG 62.336 66.667 0.00 0.00 0.00 3.35
5489 11571 4.021925 GAGCAACACCCGGCCTCT 62.022 66.667 0.00 0.00 0.00 3.69
5490 11572 3.628646 ATGAGCAACACCCGGCCTC 62.629 63.158 0.00 0.00 0.00 4.70
5491 11573 3.628646 GATGAGCAACACCCGGCCT 62.629 63.158 0.00 0.00 0.00 5.19
5492 11574 3.134127 GATGAGCAACACCCGGCC 61.134 66.667 0.00 0.00 0.00 6.13
5493 11575 1.750399 ATGATGAGCAACACCCGGC 60.750 57.895 0.00 0.00 0.00 6.13
5494 11576 1.996786 GCATGATGAGCAACACCCGG 61.997 60.000 0.00 0.00 0.00 5.73
5495 11577 1.028330 AGCATGATGAGCAACACCCG 61.028 55.000 0.00 0.00 0.00 5.28
5496 11578 1.180029 AAGCATGATGAGCAACACCC 58.820 50.000 0.00 0.00 0.00 4.61
5497 11579 2.029649 ACAAAGCATGATGAGCAACACC 60.030 45.455 0.00 0.00 0.00 4.16
5498 11580 3.293311 ACAAAGCATGATGAGCAACAC 57.707 42.857 0.00 0.00 0.00 3.32
5499 11581 4.096833 GGATACAAAGCATGATGAGCAACA 59.903 41.667 0.00 0.00 0.00 3.33
5500 11582 4.604976 GGATACAAAGCATGATGAGCAAC 58.395 43.478 0.00 0.00 0.00 4.17
5501 11583 3.313249 CGGATACAAAGCATGATGAGCAA 59.687 43.478 0.00 0.00 0.00 3.91
5502 11584 2.874086 CGGATACAAAGCATGATGAGCA 59.126 45.455 0.00 0.00 0.00 4.26
5503 11585 2.350197 GCGGATACAAAGCATGATGAGC 60.350 50.000 0.00 0.00 0.00 4.26
5504 11586 3.136763 AGCGGATACAAAGCATGATGAG 58.863 45.455 0.00 0.00 0.00 2.90
5505 11587 3.198409 AGCGGATACAAAGCATGATGA 57.802 42.857 0.00 0.00 0.00 2.92
5506 11588 3.313249 TCAAGCGGATACAAAGCATGATG 59.687 43.478 0.00 0.00 34.34 3.07
5507 11589 3.544684 TCAAGCGGATACAAAGCATGAT 58.455 40.909 0.00 0.00 34.34 2.45
5508 11590 2.984562 TCAAGCGGATACAAAGCATGA 58.015 42.857 0.00 0.00 36.46 3.07
5509 11591 3.624900 CATCAAGCGGATACAAAGCATG 58.375 45.455 0.00 0.00 33.95 4.06
5510 11592 2.033801 GCATCAAGCGGATACAAAGCAT 59.966 45.455 0.00 0.00 33.95 3.79
5511 11593 1.401552 GCATCAAGCGGATACAAAGCA 59.598 47.619 0.00 0.00 33.95 3.91
5512 11594 2.111041 GCATCAAGCGGATACAAAGC 57.889 50.000 0.00 0.00 33.95 3.51
5528 11610 9.669353 CGCTTTTATTATCTCAAAATGTAGCAT 57.331 29.630 0.00 0.00 0.00 3.79
5529 11611 8.673711 ACGCTTTTATTATCTCAAAATGTAGCA 58.326 29.630 0.00 0.00 0.00 3.49
5530 11612 9.159470 GACGCTTTTATTATCTCAAAATGTAGC 57.841 33.333 0.00 0.00 0.00 3.58
5531 11613 9.651718 GGACGCTTTTATTATCTCAAAATGTAG 57.348 33.333 0.00 0.00 0.00 2.74
5532 11614 9.391006 AGGACGCTTTTATTATCTCAAAATGTA 57.609 29.630 0.00 0.00 0.00 2.29
5533 11615 8.281212 AGGACGCTTTTATTATCTCAAAATGT 57.719 30.769 0.00 0.00 0.00 2.71
5534 11616 9.573133 AAAGGACGCTTTTATTATCTCAAAATG 57.427 29.630 0.00 0.00 0.00 2.32
5576 11658 9.253832 ACAACAAAAGGATTCAATCATATGGTA 57.746 29.630 2.13 0.00 0.00 3.25
5577 11659 8.137745 ACAACAAAAGGATTCAATCATATGGT 57.862 30.769 2.13 0.00 0.00 3.55
5603 11685 0.387202 CAGCCACTCCCACTATCTCG 59.613 60.000 0.00 0.00 0.00 4.04
5633 11715 3.621715 GGTGTTTTGTCAGAGAACGTTCT 59.378 43.478 30.12 30.12 41.00 3.01
5634 11716 3.621715 AGGTGTTTTGTCAGAGAACGTTC 59.378 43.478 20.71 20.71 0.00 3.95
5635 11717 3.606687 AGGTGTTTTGTCAGAGAACGTT 58.393 40.909 0.00 0.00 0.00 3.99
5636 11718 3.118738 AGAGGTGTTTTGTCAGAGAACGT 60.119 43.478 0.00 0.00 0.00 3.99
5637 11719 3.246226 CAGAGGTGTTTTGTCAGAGAACG 59.754 47.826 0.00 0.00 0.00 3.95
5643 11725 3.689161 TGACAACAGAGGTGTTTTGTCAG 59.311 43.478 11.04 0.00 45.00 3.51
5657 11739 4.044336 TGTGGCAAAGAAATGACAACAG 57.956 40.909 0.00 0.00 40.79 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.