Multiple sequence alignment - TraesCS1B01G448800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G448800 chr1B 100.000 2520 0 0 1 2520 667823521 667826040 0.000000e+00 4654.0
1 TraesCS1B01G448800 chr1B 90.476 42 4 0 253 294 588218119 588218160 3.500000e-04 56.5
2 TraesCS1B01G448800 chr1D 91.788 1717 96 23 70 1764 479595590 479597283 0.000000e+00 2348.0
3 TraesCS1B01G448800 chr1D 92.395 263 20 0 1926 2188 479600032 479600294 2.370000e-100 375.0
4 TraesCS1B01G448800 chr1D 97.727 44 0 1 1189 1232 468873217 468873175 9.670000e-10 75.0
5 TraesCS1B01G448800 chr1D 78.261 115 22 3 193 306 47324383 47324271 1.250000e-08 71.3
6 TraesCS1B01G448800 chr1A 93.959 629 27 7 1 620 575871758 575872384 0.000000e+00 941.0
7 TraesCS1B01G448800 chr1A 89.060 585 47 6 609 1191 575872412 575872981 0.000000e+00 710.0
8 TraesCS1B01G448800 chr1A 86.200 529 46 12 1245 1764 575872983 575873493 4.740000e-152 547.0
9 TraesCS1B01G448800 chr1A 89.695 262 25 2 1926 2186 575904247 575904507 1.440000e-87 333.0
10 TraesCS1B01G448800 chr1A 94.030 67 4 0 2239 2305 556808922 556808856 4.430000e-18 102.0
11 TraesCS1B01G448800 chr1A 100.000 40 0 0 1193 1232 519812945 519812906 9.670000e-10 75.0
12 TraesCS1B01G448800 chr3B 88.746 311 5 8 2187 2472 827046676 827046981 1.110000e-93 353.0
13 TraesCS1B01G448800 chr3B 88.746 311 5 8 2187 2472 827592826 827593131 1.110000e-93 353.0
14 TraesCS1B01G448800 chr2D 83.702 362 17 16 2187 2513 50493457 50493811 1.130000e-78 303.0
15 TraesCS1B01G448800 chr2D 94.030 67 4 0 2239 2305 623774538 623774604 4.430000e-18 102.0
16 TraesCS1B01G448800 chr4B 86.466 266 6 11 2181 2420 285565564 285565825 5.350000e-67 265.0
17 TraesCS1B01G448800 chr4B 81.847 314 24 16 2190 2477 285548409 285548715 1.510000e-57 233.0
18 TraesCS1B01G448800 chr4A 88.718 195 7 9 2320 2511 7601524 7601706 9.070000e-55 224.0
19 TraesCS1B01G448800 chr4A 90.728 151 9 1 2320 2470 7608418 7608563 1.980000e-46 196.0
20 TraesCS1B01G448800 chr6B 85.455 110 12 3 2188 2297 453126138 453126243 7.370000e-21 111.0
21 TraesCS1B01G448800 chr6B 82.906 117 14 4 2181 2297 453131939 453132049 1.600000e-17 100.0
22 TraesCS1B01G448800 chr3D 96.774 62 1 1 2450 2510 560000258 560000319 4.430000e-18 102.0
23 TraesCS1B01G448800 chr7D 94.231 52 2 1 231 282 5355889 5355839 7.470000e-11 78.7
24 TraesCS1B01G448800 chr7A 100.000 40 0 0 1193 1232 8589717 8589756 9.670000e-10 75.0
25 TraesCS1B01G448800 chrUn 100.000 39 0 0 1193 1231 1072542 1072580 3.480000e-09 73.1
26 TraesCS1B01G448800 chrUn 100.000 39 0 0 1193 1231 300084031 300083993 3.480000e-09 73.1
27 TraesCS1B01G448800 chrUn 91.489 47 4 0 250 296 231612949 231612995 5.820000e-07 65.8
28 TraesCS1B01G448800 chr6D 95.556 45 2 0 1187 1231 27833581 27833537 3.480000e-09 73.1
29 TraesCS1B01G448800 chr6A 97.619 42 1 0 1191 1232 48788877 48788836 3.480000e-09 73.1
30 TraesCS1B01G448800 chr6A 91.489 47 4 0 250 296 3708861 3708907 5.820000e-07 65.8
31 TraesCS1B01G448800 chr2A 97.619 42 1 0 1191 1232 569370357 569370398 3.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G448800 chr1B 667823521 667826040 2519 False 4654.000000 4654 100.000000 1 2520 1 chr1B.!!$F2 2519
1 TraesCS1B01G448800 chr1D 479595590 479600294 4704 False 1361.500000 2348 92.091500 70 2188 2 chr1D.!!$F1 2118
2 TraesCS1B01G448800 chr1A 575871758 575873493 1735 False 732.666667 941 89.739667 1 1764 3 chr1A.!!$F2 1763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 813 0.882042 GTGTGATGCAGGGCCTATCG 60.882 60.0 5.28 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 4798 0.033504 AACACGCACGTTCCTCTCAT 59.966 50.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.155975 ACTTTGTGTATGAAGTGAATATGACTC 57.844 33.333 0.00 0.00 34.96 3.36
398 405 6.430007 AGTAAGAAAGATTCAGCCATTCCAT 58.570 36.000 0.00 0.00 0.00 3.41
474 481 1.998315 CTCACACTTGCTCATCCTTCG 59.002 52.381 0.00 0.00 0.00 3.79
518 527 4.196193 TCGACCCACACCATCAATATTTC 58.804 43.478 0.00 0.00 0.00 2.17
523 532 5.044919 ACCCACACCATCAATATTTCTCTGA 60.045 40.000 0.00 0.00 0.00 3.27
580 590 8.597662 AAACGATACTTGAAAAACTAGTGCTA 57.402 30.769 0.00 0.00 36.20 3.49
594 604 4.697352 ACTAGTGCTAAACTCATGCTTTGG 59.303 41.667 0.00 0.00 40.56 3.28
671 722 3.443037 TGTGTTCAAGATTTTGTTGCGG 58.557 40.909 0.00 0.00 35.73 5.69
693 744 7.908082 TGCGGAGACATCTTTTATTTTTATTCG 59.092 33.333 0.00 0.00 0.00 3.34
719 774 9.255304 GCAAATGTTTCTTTATAAACCAGACAA 57.745 29.630 0.00 0.00 38.35 3.18
745 800 4.974645 TGTTGTAAGAAGGGAGTGTGAT 57.025 40.909 0.00 0.00 0.00 3.06
758 813 0.882042 GTGTGATGCAGGGCCTATCG 60.882 60.000 5.28 0.00 0.00 2.92
770 825 3.263261 GGGCCTATCGCTCTTTATTAGC 58.737 50.000 0.84 0.00 33.85 3.09
774 829 4.167268 CCTATCGCTCTTTATTAGCCGAC 58.833 47.826 0.00 0.00 36.60 4.79
878 934 8.126700 GGAAATCTTAACACGAAAAGTTGAGAA 58.873 33.333 4.95 0.00 42.42 2.87
882 938 6.477688 TCTTAACACGAAAAGTTGAGAACGAT 59.522 34.615 0.00 0.00 38.26 3.73
1028 1085 0.516877 TTGCAAAGCTCCATCGAACG 59.483 50.000 0.00 0.00 0.00 3.95
1059 1116 3.380637 AGAAGCATAGAAATGGCTGCAAG 59.619 43.478 0.50 0.00 37.09 4.01
1116 1173 2.107953 GCTCGTCTCCCAGGATGC 59.892 66.667 0.00 0.00 31.97 3.91
1147 1204 1.802508 GCAGGTGGTTTGCAAACTGAC 60.803 52.381 34.39 29.06 41.17 3.51
1184 1241 3.919216 AGAACAAGTAGTGCTGCTAGTG 58.081 45.455 0.00 0.00 33.67 2.74
1191 1248 4.753233 AGTAGTGCTGCTAGTGAATTGAG 58.247 43.478 0.00 0.00 32.37 3.02
1385 1449 1.145571 TGGATATGGGCCTGGTTACC 58.854 55.000 4.53 0.00 0.00 2.85
1386 1450 1.346046 TGGATATGGGCCTGGTTACCT 60.346 52.381 4.53 0.00 0.00 3.08
1387 1451 2.089868 TGGATATGGGCCTGGTTACCTA 60.090 50.000 4.53 0.00 0.00 3.08
1450 1517 4.722700 GGTGATGGTGGCAGCGGT 62.723 66.667 12.58 2.93 0.00 5.68
1471 1538 6.147328 GCGGTTATCCTTGAGGTGAATATTAC 59.853 42.308 0.00 0.00 36.34 1.89
1478 1545 3.376636 TGAGGTGAATATTACGGGGTGA 58.623 45.455 0.00 0.00 0.00 4.02
1493 1560 0.596082 GGTGACGGTCAAAATGGTGG 59.404 55.000 13.23 0.00 0.00 4.61
1494 1561 1.314730 GTGACGGTCAAAATGGTGGT 58.685 50.000 13.23 0.00 0.00 4.16
1518 1585 9.444600 GGTTGTCACTCTAGAAACCAAATATAA 57.555 33.333 15.48 0.00 40.05 0.98
1574 1641 2.101053 TATCTGCTCGAGCGTTTACG 57.899 50.000 30.75 14.93 45.83 3.18
1617 1684 7.658261 TGATAGTATTGCGAGCTAGTAAATGT 58.342 34.615 0.95 0.00 0.00 2.71
1618 1685 7.808381 TGATAGTATTGCGAGCTAGTAAATGTC 59.192 37.037 0.95 0.85 0.00 3.06
1619 1686 4.976731 AGTATTGCGAGCTAGTAAATGTCG 59.023 41.667 0.95 0.00 0.00 4.35
1651 1718 6.203338 CACTTGTGTATGCATGACATATGCTA 59.797 38.462 10.16 0.00 43.11 3.49
1657 1724 8.131100 GTGTATGCATGACATATGCTAACTTTT 58.869 33.333 10.16 0.00 43.11 2.27
1658 1725 9.336171 TGTATGCATGACATATGCTAACTTTTA 57.664 29.630 10.16 0.00 43.11 1.52
1659 1726 9.817365 GTATGCATGACATATGCTAACTTTTAG 57.183 33.333 10.16 0.00 43.11 1.85
1660 1727 7.864108 TGCATGACATATGCTAACTTTTAGT 57.136 32.000 12.45 0.00 44.79 2.24
1661 1728 8.279970 TGCATGACATATGCTAACTTTTAGTT 57.720 30.769 12.45 0.00 44.79 2.24
1662 1729 8.739039 TGCATGACATATGCTAACTTTTAGTTT 58.261 29.630 12.45 0.00 44.79 2.66
1680 1747 2.116827 TTTAGGTATGGTGGCAACGG 57.883 50.000 0.00 0.00 42.51 4.44
1681 1748 0.985760 TTAGGTATGGTGGCAACGGT 59.014 50.000 0.00 0.00 42.51 4.83
1682 1749 0.250793 TAGGTATGGTGGCAACGGTG 59.749 55.000 0.00 0.00 42.51 4.94
1683 1750 2.043980 GGTATGGTGGCAACGGTGG 61.044 63.158 0.90 0.00 42.51 4.61
1718 1787 8.763049 ACATGTATTCGAACACATATCCATAG 57.237 34.615 20.88 9.96 33.66 2.23
1719 1788 7.819415 ACATGTATTCGAACACATATCCATAGG 59.181 37.037 20.88 9.29 33.66 2.57
1722 1791 3.990092 TCGAACACATATCCATAGGTGC 58.010 45.455 10.54 0.00 45.85 5.01
1747 1816 9.223099 GCACCTATTTCCAGTTAGTTTAAGTTA 57.777 33.333 0.00 0.00 0.00 2.24
1786 3117 4.766375 ACTAGTTTATGAACACATCCCCG 58.234 43.478 2.93 0.00 38.26 5.73
1788 3119 1.404035 GTTTATGAACACATCCCCGCC 59.596 52.381 0.00 0.00 35.79 6.13
1789 3120 0.462937 TTATGAACACATCCCCGCCG 60.463 55.000 0.00 0.00 0.00 6.46
1790 3121 2.933878 TATGAACACATCCCCGCCGC 62.934 60.000 0.00 0.00 0.00 6.53
1806 3137 1.300233 CGCGCCTCTTATGGACCTC 60.300 63.158 0.00 0.00 0.00 3.85
1811 3142 0.105039 CCTCTTATGGACCTCACGGC 59.895 60.000 0.00 0.00 0.00 5.68
1815 3146 1.207089 CTTATGGACCTCACGGCTTGA 59.793 52.381 0.00 0.00 0.00 3.02
1819 3150 1.314730 GGACCTCACGGCTTGAAAAA 58.685 50.000 0.00 0.00 32.21 1.94
1824 3155 2.357637 CCTCACGGCTTGAAAAACTTGA 59.642 45.455 0.00 0.00 32.21 3.02
1828 3159 2.119457 CGGCTTGAAAAACTTGAGCAC 58.881 47.619 0.00 0.00 35.12 4.40
1836 3167 7.148902 GCTTGAAAAACTTGAGCACTATAAAGC 60.149 37.037 0.00 0.00 33.68 3.51
1843 3174 5.581085 ACTTGAGCACTATAAAGCGGTTAAG 59.419 40.000 0.00 1.43 35.89 1.85
1850 3181 6.741358 GCACTATAAAGCGGTTAAGTTCTTTG 59.259 38.462 0.00 0.00 31.92 2.77
1851 3182 6.741358 CACTATAAAGCGGTTAAGTTCTTTGC 59.259 38.462 0.00 0.00 31.92 3.68
1852 3183 5.959618 ATAAAGCGGTTAAGTTCTTTGCT 57.040 34.783 0.00 0.00 31.92 3.91
1855 3186 3.964909 AGCGGTTAAGTTCTTTGCTTTG 58.035 40.909 0.00 0.00 0.00 2.77
1856 3187 3.380320 AGCGGTTAAGTTCTTTGCTTTGT 59.620 39.130 0.00 0.00 0.00 2.83
1862 3193 7.477494 GGTTAAGTTCTTTGCTTTGTTGACTA 58.523 34.615 0.00 0.00 0.00 2.59
1866 3197 7.992180 AGTTCTTTGCTTTGTTGACTATTTG 57.008 32.000 0.00 0.00 0.00 2.32
1867 3198 7.771183 AGTTCTTTGCTTTGTTGACTATTTGA 58.229 30.769 0.00 0.00 0.00 2.69
1870 3201 9.598517 TTCTTTGCTTTGTTGACTATTTGAAAT 57.401 25.926 0.00 0.00 0.00 2.17
1873 3204 9.474920 TTTGCTTTGTTGACTATTTGAAATAGG 57.525 29.630 24.18 10.18 0.00 2.57
1875 3206 9.023962 TGCTTTGTTGACTATTTGAAATAGGAT 57.976 29.630 24.18 8.47 0.00 3.24
1876 3207 9.860898 GCTTTGTTGACTATTTGAAATAGGATT 57.139 29.630 24.18 7.83 0.00 3.01
1881 3212 9.704098 GTTGACTATTTGAAATAGGATTTCGAC 57.296 33.333 24.18 18.20 0.00 4.20
1882 3213 9.667107 TTGACTATTTGAAATAGGATTTCGACT 57.333 29.630 24.18 4.67 0.00 4.18
1883 3214 9.098355 TGACTATTTGAAATAGGATTTCGACTG 57.902 33.333 24.18 1.50 0.00 3.51
1884 3215 7.920738 ACTATTTGAAATAGGATTTCGACTGC 58.079 34.615 24.18 0.00 0.00 4.40
1885 3216 7.770897 ACTATTTGAAATAGGATTTCGACTGCT 59.229 33.333 24.18 1.12 0.00 4.24
1886 3217 6.817765 TTTGAAATAGGATTTCGACTGCTT 57.182 33.333 7.28 0.00 0.00 3.91
1887 3218 7.915293 TTTGAAATAGGATTTCGACTGCTTA 57.085 32.000 7.28 0.00 0.00 3.09
1888 3219 8.506168 TTTGAAATAGGATTTCGACTGCTTAT 57.494 30.769 7.28 0.00 0.00 1.73
1889 3220 8.506168 TTGAAATAGGATTTCGACTGCTTATT 57.494 30.769 7.28 0.00 0.00 1.40
1891 3222 7.552687 TGAAATAGGATTTCGACTGCTTATTGT 59.447 33.333 7.28 0.00 0.00 2.71
1892 3223 6.851222 ATAGGATTTCGACTGCTTATTGTG 57.149 37.500 0.00 0.00 0.00 3.33
1893 3224 3.941483 AGGATTTCGACTGCTTATTGTGG 59.059 43.478 0.00 0.00 0.00 4.17
1894 3225 3.487544 GGATTTCGACTGCTTATTGTGGC 60.488 47.826 0.00 0.00 0.00 5.01
1897 3228 1.828595 TCGACTGCTTATTGTGGCCTA 59.171 47.619 3.32 0.00 0.00 3.93
1898 3229 2.434336 TCGACTGCTTATTGTGGCCTAT 59.566 45.455 3.32 0.00 0.00 2.57
1901 3232 5.479027 TCGACTGCTTATTGTGGCCTATATA 59.521 40.000 3.32 0.00 0.00 0.86
1904 3235 5.882557 ACTGCTTATTGTGGCCTATATATGC 59.117 40.000 3.32 12.20 0.00 3.14
1913 3244 3.665190 GGCCTATATATGCCGCTTATCC 58.335 50.000 12.58 0.00 38.00 2.59
1914 3245 3.071023 GGCCTATATATGCCGCTTATCCA 59.929 47.826 12.58 0.00 38.00 3.41
1915 3246 4.444306 GGCCTATATATGCCGCTTATCCAA 60.444 45.833 12.58 0.00 38.00 3.53
1917 3248 5.588648 GCCTATATATGCCGCTTATCCAAAA 59.411 40.000 2.20 0.00 0.00 2.44
1918 3249 6.238484 GCCTATATATGCCGCTTATCCAAAAG 60.238 42.308 2.20 0.00 0.00 2.27
1919 3250 7.047891 CCTATATATGCCGCTTATCCAAAAGA 58.952 38.462 2.20 0.00 0.00 2.52
1920 3251 6.992063 ATATATGCCGCTTATCCAAAAGAG 57.008 37.500 2.20 0.00 0.00 2.85
1921 3252 2.779755 TGCCGCTTATCCAAAAGAGA 57.220 45.000 0.00 0.00 0.00 3.10
1922 3253 2.632377 TGCCGCTTATCCAAAAGAGAG 58.368 47.619 0.00 0.00 0.00 3.20
1923 3254 1.332065 GCCGCTTATCCAAAAGAGAGC 59.668 52.381 0.00 0.00 35.37 4.09
1924 3255 2.632377 CCGCTTATCCAAAAGAGAGCA 58.368 47.619 0.00 0.00 37.42 4.26
1931 4593 6.318396 GCTTATCCAAAAGAGAGCAGAATCTT 59.682 38.462 0.00 0.00 37.48 2.40
1951 4613 5.555017 TCTTTGGTTCATCTCTTCTCCAAG 58.445 41.667 0.00 0.00 36.53 3.61
1957 4619 2.094494 TCATCTCTTCTCCAAGTGTCGC 60.094 50.000 0.00 0.00 0.00 5.19
1961 4623 1.000955 TCTTCTCCAAGTGTCGCTTCC 59.999 52.381 0.00 0.00 34.69 3.46
1972 4634 1.073284 TGTCGCTTCCCTTTAAGGCTT 59.927 47.619 5.29 4.58 32.73 4.35
2036 4698 2.537633 ATCCATGTGCCATTTGGAGT 57.462 45.000 0.00 0.00 42.53 3.85
2038 4700 0.108520 CCATGTGCCATTTGGAGTGC 60.109 55.000 0.00 0.00 37.39 4.40
2040 4702 1.135199 CATGTGCCATTTGGAGTGCTC 60.135 52.381 0.00 0.00 37.39 4.26
2068 4730 3.382048 GAGTTGTGGGTTAACTCGTCT 57.618 47.619 5.42 0.00 43.00 4.18
2088 4750 7.331026 TCGTCTGACAAGAGAATTCCAAATAT 58.669 34.615 8.73 0.00 31.37 1.28
2099 4761 6.823497 AGAATTCCAAATATGAAAGCCATGG 58.177 36.000 7.63 7.63 36.71 3.66
2117 4779 1.234615 GGCTTTACCAACTGCGCTCA 61.235 55.000 9.73 0.00 38.86 4.26
2127 4789 2.679837 CAACTGCGCTCATTAGTTGGAT 59.320 45.455 22.95 0.00 44.55 3.41
2136 4798 6.972328 GCGCTCATTAGTTGGATTATTTTGAA 59.028 34.615 0.00 0.00 0.00 2.69
2172 4834 1.318576 GTTTTCCACCACAGGTCCAG 58.681 55.000 0.00 0.00 31.02 3.86
2188 4850 1.746615 CAGACCACCGCCAATCCTG 60.747 63.158 0.00 0.00 0.00 3.86
2189 4851 2.224159 AGACCACCGCCAATCCTGT 61.224 57.895 0.00 0.00 0.00 4.00
2190 4852 1.303317 GACCACCGCCAATCCTGTT 60.303 57.895 0.00 0.00 0.00 3.16
2191 4853 1.586154 GACCACCGCCAATCCTGTTG 61.586 60.000 0.00 0.00 0.00 3.33
2192 4854 2.342650 CCACCGCCAATCCTGTTGG 61.343 63.158 2.50 2.50 42.37 3.77
2193 4855 1.603455 CACCGCCAATCCTGTTGGT 60.603 57.895 8.45 0.00 41.53 3.67
2194 4856 1.152830 ACCGCCAATCCTGTTGGTT 59.847 52.632 8.45 0.00 41.53 3.67
2195 4857 0.469144 ACCGCCAATCCTGTTGGTTT 60.469 50.000 8.45 0.00 41.53 3.27
2196 4858 0.678950 CCGCCAATCCTGTTGGTTTT 59.321 50.000 8.45 0.00 41.53 2.43
2197 4859 1.069978 CCGCCAATCCTGTTGGTTTTT 59.930 47.619 8.45 0.00 41.53 1.94
2198 4860 2.134346 CGCCAATCCTGTTGGTTTTTG 58.866 47.619 8.45 0.00 41.53 2.44
2199 4861 2.223923 CGCCAATCCTGTTGGTTTTTGA 60.224 45.455 8.45 0.00 41.53 2.69
2200 4862 3.554752 CGCCAATCCTGTTGGTTTTTGAT 60.555 43.478 8.45 0.00 41.53 2.57
2201 4863 3.996363 GCCAATCCTGTTGGTTTTTGATC 59.004 43.478 8.45 0.00 41.53 2.92
2202 4864 4.262592 GCCAATCCTGTTGGTTTTTGATCT 60.263 41.667 8.45 0.00 41.53 2.75
2203 4865 5.742838 GCCAATCCTGTTGGTTTTTGATCTT 60.743 40.000 8.45 0.00 41.53 2.40
2204 4866 5.697633 CCAATCCTGTTGGTTTTTGATCTTG 59.302 40.000 0.00 0.00 34.92 3.02
2205 4867 4.935352 TCCTGTTGGTTTTTGATCTTGG 57.065 40.909 0.00 0.00 34.23 3.61
2206 4868 4.285863 TCCTGTTGGTTTTTGATCTTGGT 58.714 39.130 0.00 0.00 34.23 3.67
2207 4869 5.450453 TCCTGTTGGTTTTTGATCTTGGTA 58.550 37.500 0.00 0.00 34.23 3.25
2208 4870 5.534654 TCCTGTTGGTTTTTGATCTTGGTAG 59.465 40.000 0.00 0.00 34.23 3.18
2209 4871 5.534654 CCTGTTGGTTTTTGATCTTGGTAGA 59.465 40.000 0.00 0.00 34.21 2.59
2210 4872 6.209391 CCTGTTGGTTTTTGATCTTGGTAGAT 59.791 38.462 0.00 0.00 43.85 1.98
2221 4883 4.150897 TCTTGGTAGATCAAATTCCCCG 57.849 45.455 0.00 0.00 0.00 5.73
2222 4884 3.118038 TCTTGGTAGATCAAATTCCCCGG 60.118 47.826 0.00 0.00 0.00 5.73
2223 4885 2.483547 TGGTAGATCAAATTCCCCGGA 58.516 47.619 0.73 0.00 0.00 5.14
2224 4886 2.438021 TGGTAGATCAAATTCCCCGGAG 59.562 50.000 0.73 0.00 0.00 4.63
2225 4887 2.704065 GGTAGATCAAATTCCCCGGAGA 59.296 50.000 0.73 0.00 0.00 3.71
2226 4888 3.244249 GGTAGATCAAATTCCCCGGAGAG 60.244 52.174 0.73 0.00 0.00 3.20
2227 4889 1.771255 AGATCAAATTCCCCGGAGAGG 59.229 52.381 0.73 0.00 40.63 3.69
2228 4890 1.490910 GATCAAATTCCCCGGAGAGGT 59.509 52.381 0.73 0.00 38.74 3.85
2229 4891 0.618458 TCAAATTCCCCGGAGAGGTG 59.382 55.000 0.73 0.00 38.74 4.00
2230 4892 1.032114 CAAATTCCCCGGAGAGGTGC 61.032 60.000 0.73 0.00 38.74 5.01
2231 4893 1.497309 AAATTCCCCGGAGAGGTGCA 61.497 55.000 0.73 0.00 38.74 4.57
2232 4894 1.915078 AATTCCCCGGAGAGGTGCAG 61.915 60.000 0.73 0.00 38.74 4.41
2235 4897 4.020617 CCCGGAGAGGTGCAGCAA 62.021 66.667 19.63 0.00 38.74 3.91
2236 4898 2.743928 CCGGAGAGGTGCAGCAAC 60.744 66.667 19.63 0.57 34.51 4.17
2237 4899 2.031012 CGGAGAGGTGCAGCAACA 59.969 61.111 19.63 0.00 0.00 3.33
2238 4900 2.320587 CGGAGAGGTGCAGCAACAC 61.321 63.158 19.63 6.46 39.94 3.32
2239 4901 1.227943 GGAGAGGTGCAGCAACACA 60.228 57.895 19.63 0.00 42.55 3.72
2240 4902 1.510480 GGAGAGGTGCAGCAACACAC 61.510 60.000 19.63 4.82 42.55 3.82
2241 4903 1.835483 GAGAGGTGCAGCAACACACG 61.835 60.000 19.63 0.00 42.55 4.49
2242 4904 2.124736 AGGTGCAGCAACACACGT 60.125 55.556 19.63 0.00 42.55 4.49
2243 4905 0.878523 GAGGTGCAGCAACACACGTA 60.879 55.000 19.63 0.00 42.55 3.57
2244 4906 1.157870 AGGTGCAGCAACACACGTAC 61.158 55.000 19.63 0.00 42.55 3.67
2245 4907 1.083657 GTGCAGCAACACACGTACG 60.084 57.895 15.01 15.01 40.40 3.67
2246 4908 1.519676 TGCAGCAACACACGTACGT 60.520 52.632 16.72 16.72 0.00 3.57
2257 4919 2.539346 CACGTACGTGTAAGCTAGCT 57.461 50.000 34.48 12.68 40.91 3.32
2258 4920 2.438583 CACGTACGTGTAAGCTAGCTC 58.561 52.381 34.48 7.13 40.91 4.09
2259 4921 2.079158 ACGTACGTGTAAGCTAGCTCA 58.921 47.619 22.14 10.10 0.00 4.26
2260 4922 2.485426 ACGTACGTGTAAGCTAGCTCAA 59.515 45.455 22.14 6.68 0.00 3.02
2261 4923 3.058016 ACGTACGTGTAAGCTAGCTCAAA 60.058 43.478 22.14 0.00 0.00 2.69
2262 4924 3.542704 CGTACGTGTAAGCTAGCTCAAAG 59.457 47.826 19.65 12.21 0.00 2.77
2263 4925 3.936372 ACGTGTAAGCTAGCTCAAAGA 57.064 42.857 19.65 2.42 0.00 2.52
2264 4926 4.252971 ACGTGTAAGCTAGCTCAAAGAA 57.747 40.909 19.65 0.00 0.00 2.52
2265 4927 4.238514 ACGTGTAAGCTAGCTCAAAGAAG 58.761 43.478 19.65 10.00 0.00 2.85
2266 4928 3.061429 CGTGTAAGCTAGCTCAAAGAAGC 59.939 47.826 19.65 0.00 42.82 3.86
2267 4929 3.997021 GTGTAAGCTAGCTCAAAGAAGCA 59.003 43.478 19.65 5.66 45.00 3.91
2268 4930 4.452455 GTGTAAGCTAGCTCAAAGAAGCAA 59.548 41.667 19.65 0.00 45.00 3.91
2269 4931 4.452455 TGTAAGCTAGCTCAAAGAAGCAAC 59.548 41.667 19.65 4.97 45.00 4.17
2270 4932 2.431454 AGCTAGCTCAAAGAAGCAACC 58.569 47.619 12.68 0.00 45.00 3.77
2271 4933 2.154462 GCTAGCTCAAAGAAGCAACCA 58.846 47.619 7.70 0.00 45.00 3.67
2272 4934 2.554032 GCTAGCTCAAAGAAGCAACCAA 59.446 45.455 7.70 0.00 45.00 3.67
2273 4935 3.365767 GCTAGCTCAAAGAAGCAACCAAG 60.366 47.826 7.70 0.00 45.00 3.61
2274 4936 1.339291 AGCTCAAAGAAGCAACCAAGC 59.661 47.619 0.00 0.00 45.00 4.01
2276 4938 2.554032 GCTCAAAGAAGCAACCAAGCTA 59.446 45.455 0.00 0.00 45.89 3.32
2277 4939 3.365767 GCTCAAAGAAGCAACCAAGCTAG 60.366 47.826 0.00 0.00 45.89 3.42
2278 4940 3.817647 CTCAAAGAAGCAACCAAGCTAGT 59.182 43.478 0.00 0.00 45.89 2.57
2279 4941 4.968259 TCAAAGAAGCAACCAAGCTAGTA 58.032 39.130 0.00 0.00 45.89 1.82
2280 4942 4.997395 TCAAAGAAGCAACCAAGCTAGTAG 59.003 41.667 0.00 0.00 45.89 2.57
2281 4943 2.979240 AGAAGCAACCAAGCTAGTAGC 58.021 47.619 14.62 14.62 45.89 3.58
2298 4960 7.093992 GCTAGTAGCTTAATTGATCTACAGGG 58.906 42.308 15.16 4.74 38.45 4.45
2299 4961 7.039644 GCTAGTAGCTTAATTGATCTACAGGGA 60.040 40.741 15.16 0.00 38.45 4.20
2300 4962 7.676683 AGTAGCTTAATTGATCTACAGGGAA 57.323 36.000 12.19 0.00 35.19 3.97
2301 4963 7.501844 AGTAGCTTAATTGATCTACAGGGAAC 58.498 38.462 12.19 0.00 35.19 3.62
2302 4964 6.567602 AGCTTAATTGATCTACAGGGAACT 57.432 37.500 0.00 0.00 46.44 3.01
2303 4965 7.676683 AGCTTAATTGATCTACAGGGAACTA 57.323 36.000 0.00 0.00 40.21 2.24
2304 4966 7.731054 AGCTTAATTGATCTACAGGGAACTAG 58.269 38.462 0.00 0.00 40.21 2.57
2305 4967 7.345914 AGCTTAATTGATCTACAGGGAACTAGT 59.654 37.037 0.00 0.00 40.21 2.57
2306 4968 7.988028 GCTTAATTGATCTACAGGGAACTAGTT 59.012 37.037 8.13 8.13 40.21 2.24
2307 4969 9.319143 CTTAATTGATCTACAGGGAACTAGTTG 57.681 37.037 14.14 1.25 40.21 3.16
2308 4970 6.875972 ATTGATCTACAGGGAACTAGTTGT 57.124 37.500 14.14 8.04 40.21 3.32
2309 4971 7.973048 ATTGATCTACAGGGAACTAGTTGTA 57.027 36.000 14.14 8.82 40.21 2.41
2310 4972 7.406031 TTGATCTACAGGGAACTAGTTGTAG 57.594 40.000 19.78 19.78 42.61 2.74
2311 4973 5.360144 TGATCTACAGGGAACTAGTTGTAGC 59.640 44.000 20.56 12.26 41.58 3.58
2312 4974 4.021916 TCTACAGGGAACTAGTTGTAGCC 58.978 47.826 20.56 12.99 41.58 3.93
2313 4975 2.903926 ACAGGGAACTAGTTGTAGCCT 58.096 47.619 14.14 0.00 40.21 4.58
2314 4976 2.832733 ACAGGGAACTAGTTGTAGCCTC 59.167 50.000 14.14 0.00 40.21 4.70
2315 4977 3.100671 CAGGGAACTAGTTGTAGCCTCT 58.899 50.000 14.14 0.00 40.21 3.69
2316 4978 3.131400 CAGGGAACTAGTTGTAGCCTCTC 59.869 52.174 14.14 0.00 40.21 3.20
2317 4979 2.099427 GGGAACTAGTTGTAGCCTCTCG 59.901 54.545 14.14 0.00 0.00 4.04
2318 4980 2.754002 GGAACTAGTTGTAGCCTCTCGT 59.246 50.000 14.14 0.00 0.00 4.18
2319 4981 3.193056 GGAACTAGTTGTAGCCTCTCGTT 59.807 47.826 14.14 0.00 0.00 3.85
2320 4982 3.851976 ACTAGTTGTAGCCTCTCGTTG 57.148 47.619 0.00 0.00 0.00 4.10
2321 4983 2.094649 ACTAGTTGTAGCCTCTCGTTGC 60.095 50.000 0.00 0.00 0.00 4.17
2322 4984 0.388649 AGTTGTAGCCTCTCGTTGCG 60.389 55.000 0.00 0.00 0.00 4.85
2323 4985 0.666577 GTTGTAGCCTCTCGTTGCGT 60.667 55.000 0.00 0.00 0.00 5.24
2324 4986 0.666274 TTGTAGCCTCTCGTTGCGTG 60.666 55.000 0.00 0.00 0.00 5.34
2325 4987 1.805945 GTAGCCTCTCGTTGCGTGG 60.806 63.158 0.00 0.00 0.00 4.94
2326 4988 1.974875 TAGCCTCTCGTTGCGTGGA 60.975 57.895 0.00 0.00 0.00 4.02
2327 4989 1.934220 TAGCCTCTCGTTGCGTGGAG 61.934 60.000 0.00 0.00 0.00 3.86
2349 5011 0.170116 GCTCTAGCTGGATCGGATCG 59.830 60.000 11.62 0.62 38.21 3.69
2350 5012 1.814793 CTCTAGCTGGATCGGATCGA 58.185 55.000 11.62 7.19 41.13 3.59
2351 5013 3.520381 GCTCTAGCTGGATCGGATCGAT 61.520 54.545 11.62 0.00 42.92 3.59
2363 5025 3.318886 TCGGATCGATCTACTCTCTTCG 58.681 50.000 23.96 15.29 0.00 3.79
2364 5026 2.413796 CGGATCGATCTACTCTCTTCGG 59.586 54.545 23.96 0.00 32.67 4.30
2365 5027 3.666274 GGATCGATCTACTCTCTTCGGA 58.334 50.000 23.96 0.00 32.67 4.55
2366 5028 4.066490 GGATCGATCTACTCTCTTCGGAA 58.934 47.826 23.96 0.00 32.67 4.30
2367 5029 4.083696 GGATCGATCTACTCTCTTCGGAAC 60.084 50.000 23.96 0.00 32.67 3.62
2368 5030 3.870274 TCGATCTACTCTCTTCGGAACA 58.130 45.455 0.00 0.00 32.67 3.18
2369 5031 3.622163 TCGATCTACTCTCTTCGGAACAC 59.378 47.826 0.00 0.00 32.67 3.32
2370 5032 3.623960 CGATCTACTCTCTTCGGAACACT 59.376 47.826 0.00 0.00 0.00 3.55
2371 5033 4.095185 CGATCTACTCTCTTCGGAACACTT 59.905 45.833 0.00 0.00 0.00 3.16
2372 5034 4.768130 TCTACTCTCTTCGGAACACTTG 57.232 45.455 0.00 0.00 0.00 3.16
2373 5035 2.156343 ACTCTCTTCGGAACACTTGC 57.844 50.000 0.00 0.00 0.00 4.01
2374 5036 1.063806 CTCTCTTCGGAACACTTGCG 58.936 55.000 0.00 0.00 46.40 4.85
2375 5037 0.319555 TCTCTTCGGAACACTTGCGG 60.320 55.000 0.00 0.00 45.03 5.69
2376 5038 1.901650 CTCTTCGGAACACTTGCGGC 61.902 60.000 0.00 0.00 45.03 6.53
2377 5039 3.295228 CTTCGGAACACTTGCGGCG 62.295 63.158 0.51 0.51 45.03 6.46
2378 5040 3.793775 TTCGGAACACTTGCGGCGA 62.794 57.895 12.98 0.00 45.03 5.54
2379 5041 4.072088 CGGAACACTTGCGGCGAC 62.072 66.667 12.98 2.02 41.03 5.19
2380 5042 2.665185 GGAACACTTGCGGCGACT 60.665 61.111 12.98 0.00 0.00 4.18
2381 5043 2.251642 GGAACACTTGCGGCGACTT 61.252 57.895 12.98 0.00 0.00 3.01
2382 5044 1.204312 GAACACTTGCGGCGACTTC 59.796 57.895 12.98 0.00 0.00 3.01
2383 5045 2.171489 GAACACTTGCGGCGACTTCC 62.171 60.000 12.98 0.00 0.00 3.46
2390 5052 4.565531 CGGCGACTTCCGTAACTT 57.434 55.556 0.00 0.00 44.18 2.66
2391 5053 2.067616 CGGCGACTTCCGTAACTTG 58.932 57.895 0.00 0.00 44.18 3.16
2392 5054 1.785951 GGCGACTTCCGTAACTTGC 59.214 57.895 0.00 0.00 41.15 4.01
2393 5055 1.414897 GCGACTTCCGTAACTTGCG 59.585 57.895 0.00 0.00 41.15 4.85
2394 5056 1.005294 GCGACTTCCGTAACTTGCGA 61.005 55.000 0.28 0.00 41.15 5.10
2395 5057 1.411394 CGACTTCCGTAACTTGCGAA 58.589 50.000 0.28 0.00 0.00 4.70
2396 5058 1.123756 CGACTTCCGTAACTTGCGAAC 59.876 52.381 0.28 0.00 0.00 3.95
2397 5059 1.123756 GACTTCCGTAACTTGCGAACG 59.876 52.381 0.28 0.00 36.42 3.95
2398 5060 1.269206 ACTTCCGTAACTTGCGAACGA 60.269 47.619 0.28 0.00 38.89 3.85
2399 5061 1.990563 CTTCCGTAACTTGCGAACGAT 59.009 47.619 0.28 0.00 38.89 3.73
2400 5062 2.917701 TCCGTAACTTGCGAACGATA 57.082 45.000 0.28 0.00 38.89 2.92
2401 5063 3.214697 TCCGTAACTTGCGAACGATAA 57.785 42.857 0.28 0.00 38.89 1.75
2402 5064 3.573598 TCCGTAACTTGCGAACGATAAA 58.426 40.909 0.28 0.00 38.89 1.40
2403 5065 3.986572 TCCGTAACTTGCGAACGATAAAA 59.013 39.130 0.28 0.00 38.89 1.52
2404 5066 4.076985 CCGTAACTTGCGAACGATAAAAC 58.923 43.478 0.28 0.00 38.89 2.43
2405 5067 4.143263 CCGTAACTTGCGAACGATAAAACT 60.143 41.667 0.28 0.00 38.89 2.66
2406 5068 4.774549 CGTAACTTGCGAACGATAAAACTG 59.225 41.667 0.00 0.00 38.89 3.16
2407 5069 5.387649 CGTAACTTGCGAACGATAAAACTGA 60.388 40.000 0.00 0.00 38.89 3.41
2408 5070 5.607119 AACTTGCGAACGATAAAACTGAT 57.393 34.783 0.00 0.00 0.00 2.90
2409 5071 5.204673 ACTTGCGAACGATAAAACTGATC 57.795 39.130 0.00 0.00 0.00 2.92
2419 5081 5.499139 GATAAAACTGATCGATGGCCAAA 57.501 39.130 10.96 0.00 0.00 3.28
2420 5082 6.076981 GATAAAACTGATCGATGGCCAAAT 57.923 37.500 10.96 3.47 0.00 2.32
2421 5083 4.806640 AAAACTGATCGATGGCCAAATT 57.193 36.364 10.96 0.00 0.00 1.82
2422 5084 5.913137 AAAACTGATCGATGGCCAAATTA 57.087 34.783 10.96 0.00 0.00 1.40
2423 5085 5.913137 AAACTGATCGATGGCCAAATTAA 57.087 34.783 10.96 0.00 0.00 1.40
2424 5086 5.913137 AACTGATCGATGGCCAAATTAAA 57.087 34.783 10.96 0.00 0.00 1.52
2425 5087 5.505173 ACTGATCGATGGCCAAATTAAAG 57.495 39.130 10.96 6.91 0.00 1.85
2426 5088 4.339247 ACTGATCGATGGCCAAATTAAAGG 59.661 41.667 10.96 0.00 0.00 3.11
2435 5097 3.874392 CCAAATTAAAGGCTCCTGTGG 57.126 47.619 0.00 0.00 0.00 4.17
2436 5098 3.430453 CCAAATTAAAGGCTCCTGTGGA 58.570 45.455 0.00 0.00 0.00 4.02
2446 5108 2.276732 CTCCTGTGGAGCCTTTCAAA 57.723 50.000 0.27 0.00 43.29 2.69
2447 5109 2.586425 CTCCTGTGGAGCCTTTCAAAA 58.414 47.619 0.27 0.00 43.29 2.44
2448 5110 2.958355 CTCCTGTGGAGCCTTTCAAAAA 59.042 45.455 0.27 0.00 43.29 1.94
2449 5111 3.575687 CTCCTGTGGAGCCTTTCAAAAAT 59.424 43.478 0.27 0.00 43.29 1.82
2450 5112 3.573967 TCCTGTGGAGCCTTTCAAAAATC 59.426 43.478 0.00 0.00 0.00 2.17
2451 5113 3.575687 CCTGTGGAGCCTTTCAAAAATCT 59.424 43.478 0.00 0.00 0.00 2.40
2452 5114 4.039609 CCTGTGGAGCCTTTCAAAAATCTT 59.960 41.667 0.00 0.00 0.00 2.40
2453 5115 5.453762 CCTGTGGAGCCTTTCAAAAATCTTT 60.454 40.000 0.00 0.00 0.00 2.52
2454 5116 6.239289 CCTGTGGAGCCTTTCAAAAATCTTTA 60.239 38.462 0.00 0.00 0.00 1.85
2455 5117 7.301868 TGTGGAGCCTTTCAAAAATCTTTAT 57.698 32.000 0.00 0.00 0.00 1.40
2456 5118 7.734942 TGTGGAGCCTTTCAAAAATCTTTATT 58.265 30.769 0.00 0.00 0.00 1.40
2457 5119 7.656948 TGTGGAGCCTTTCAAAAATCTTTATTG 59.343 33.333 0.00 0.00 0.00 1.90
2458 5120 6.650390 TGGAGCCTTTCAAAAATCTTTATTGC 59.350 34.615 0.00 0.00 0.00 3.56
2459 5121 6.875726 GGAGCCTTTCAAAAATCTTTATTGCT 59.124 34.615 0.00 0.00 0.00 3.91
2460 5122 7.388776 GGAGCCTTTCAAAAATCTTTATTGCTT 59.611 33.333 0.00 0.00 0.00 3.91
2461 5123 8.681486 AGCCTTTCAAAAATCTTTATTGCTTT 57.319 26.923 0.00 0.00 0.00 3.51
2462 5124 9.123902 AGCCTTTCAAAAATCTTTATTGCTTTT 57.876 25.926 0.00 0.00 0.00 2.27
2463 5125 9.385902 GCCTTTCAAAAATCTTTATTGCTTTTC 57.614 29.630 0.00 0.00 0.00 2.29
2473 5135 9.750125 AATCTTTATTGCTTTTCTCTTTTTCGT 57.250 25.926 0.00 0.00 0.00 3.85
2474 5136 9.750125 ATCTTTATTGCTTTTCTCTTTTTCGTT 57.250 25.926 0.00 0.00 0.00 3.85
2475 5137 9.019764 TCTTTATTGCTTTTCTCTTTTTCGTTG 57.980 29.630 0.00 0.00 0.00 4.10
2476 5138 8.696410 TTTATTGCTTTTCTCTTTTTCGTTGT 57.304 26.923 0.00 0.00 0.00 3.32
2477 5139 6.573617 ATTGCTTTTCTCTTTTTCGTTGTG 57.426 33.333 0.00 0.00 0.00 3.33
2478 5140 5.054390 TGCTTTTCTCTTTTTCGTTGTGT 57.946 34.783 0.00 0.00 0.00 3.72
2479 5141 5.465935 TGCTTTTCTCTTTTTCGTTGTGTT 58.534 33.333 0.00 0.00 0.00 3.32
2480 5142 6.613233 TGCTTTTCTCTTTTTCGTTGTGTTA 58.387 32.000 0.00 0.00 0.00 2.41
2481 5143 6.525280 TGCTTTTCTCTTTTTCGTTGTGTTAC 59.475 34.615 0.00 0.00 0.00 2.50
2482 5144 6.525280 GCTTTTCTCTTTTTCGTTGTGTTACA 59.475 34.615 0.00 0.00 0.00 2.41
2483 5145 7.061326 GCTTTTCTCTTTTTCGTTGTGTTACAA 59.939 33.333 0.00 0.00 35.42 2.41
2484 5146 8.442605 TTTTCTCTTTTTCGTTGTGTTACAAG 57.557 30.769 0.00 0.00 39.00 3.16
2485 5147 6.114221 TCTCTTTTTCGTTGTGTTACAAGG 57.886 37.500 7.79 7.79 43.19 3.61
2490 5152 2.828877 TCGTTGTGTTACAAGGACAGG 58.171 47.619 11.64 0.00 44.81 4.00
2491 5153 1.871039 CGTTGTGTTACAAGGACAGGG 59.129 52.381 8.27 0.00 44.19 4.45
2492 5154 2.227194 GTTGTGTTACAAGGACAGGGG 58.773 52.381 0.00 0.00 39.00 4.79
2493 5155 1.513858 TGTGTTACAAGGACAGGGGT 58.486 50.000 0.00 0.00 0.00 4.95
2494 5156 2.692024 TGTGTTACAAGGACAGGGGTA 58.308 47.619 0.00 0.00 0.00 3.69
2495 5157 2.635915 TGTGTTACAAGGACAGGGGTAG 59.364 50.000 0.00 0.00 0.00 3.18
2496 5158 2.901839 GTGTTACAAGGACAGGGGTAGA 59.098 50.000 0.00 0.00 0.00 2.59
2497 5159 2.901839 TGTTACAAGGACAGGGGTAGAC 59.098 50.000 0.00 0.00 0.00 2.59
2498 5160 1.843368 TACAAGGACAGGGGTAGACG 58.157 55.000 0.00 0.00 0.00 4.18
2499 5161 1.218316 CAAGGACAGGGGTAGACGC 59.782 63.158 0.00 0.00 0.00 5.19
2500 5162 1.229082 AAGGACAGGGGTAGACGCA 60.229 57.895 0.00 0.00 33.80 5.24
2501 5163 0.617820 AAGGACAGGGGTAGACGCAT 60.618 55.000 0.00 0.00 33.80 4.73
2502 5164 0.260816 AGGACAGGGGTAGACGCATA 59.739 55.000 0.00 0.00 33.80 3.14
2503 5165 1.133136 AGGACAGGGGTAGACGCATAT 60.133 52.381 0.00 0.00 33.80 1.78
2504 5166 2.109480 AGGACAGGGGTAGACGCATATA 59.891 50.000 0.00 0.00 33.80 0.86
2505 5167 3.097614 GGACAGGGGTAGACGCATATAT 58.902 50.000 0.00 0.00 33.80 0.86
2506 5168 4.017775 AGGACAGGGGTAGACGCATATATA 60.018 45.833 0.00 0.00 33.80 0.86
2507 5169 4.894114 GGACAGGGGTAGACGCATATATAT 59.106 45.833 0.00 0.00 33.80 0.86
2508 5170 6.066690 GGACAGGGGTAGACGCATATATATA 58.933 44.000 0.00 0.00 33.80 0.86
2509 5171 6.720288 GGACAGGGGTAGACGCATATATATAT 59.280 42.308 0.00 0.00 33.80 0.86
2510 5172 7.886970 GGACAGGGGTAGACGCATATATATATA 59.113 40.741 4.90 4.92 33.80 0.86
2511 5173 9.463902 GACAGGGGTAGACGCATATATATATAT 57.536 37.037 9.12 9.12 33.80 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 202 7.517320 ACATGGGTACTAGCATATTTCATGAA 58.483 34.615 3.38 3.38 35.06 2.57
201 204 6.936335 TGACATGGGTACTAGCATATTTCATG 59.064 38.462 0.00 0.00 36.51 3.07
202 205 6.936900 GTGACATGGGTACTAGCATATTTCAT 59.063 38.462 0.00 0.00 0.00 2.57
346 353 7.563556 TCCTTCAGAAAAAGGTTTGATTTAGGT 59.436 33.333 2.81 0.00 45.16 3.08
398 405 7.098845 AGAGAGTTCATTAGGGGGTTTTAAA 57.901 36.000 0.00 0.00 0.00 1.52
474 481 2.027469 TCTAGGACTTCGGGGCTTTTTC 60.027 50.000 0.00 0.00 0.00 2.29
518 527 9.258826 CAAAGGATATTTGTGAGATACTCAGAG 57.741 37.037 1.53 0.00 41.46 3.35
554 563 7.927048 AGCACTAGTTTTTCAAGTATCGTTTT 58.073 30.769 0.00 0.00 0.00 2.43
563 572 7.324616 GCATGAGTTTAGCACTAGTTTTTCAAG 59.675 37.037 0.00 0.00 35.01 3.02
580 590 2.040330 TGCGCCAAAGCATGAGTTT 58.960 47.368 4.18 0.00 42.92 2.66
594 604 4.088823 AGAGAAGAAAATCACATTGCGC 57.911 40.909 0.00 0.00 0.00 6.09
633 683 9.651718 CTTGAACACAAGAAAAGACATAACTAC 57.348 33.333 4.23 0.00 42.26 2.73
693 744 8.810652 TGTCTGGTTTATAAAGAAACATTTGC 57.189 30.769 0.00 0.00 40.43 3.68
719 774 6.605594 TCACACTCCCTTCTTACAACATTTTT 59.394 34.615 0.00 0.00 0.00 1.94
721 776 5.690865 TCACACTCCCTTCTTACAACATTT 58.309 37.500 0.00 0.00 0.00 2.32
741 796 1.963338 GCGATAGGCCCTGCATCAC 60.963 63.158 0.00 0.00 34.80 3.06
745 800 1.626356 AAAGAGCGATAGGCCCTGCA 61.626 55.000 0.00 0.00 45.17 4.41
758 813 8.443937 CCTAATTAATGTCGGCTAATAAAGAGC 58.556 37.037 0.00 0.00 39.33 4.09
766 821 6.017440 GCAACATCCTAATTAATGTCGGCTAA 60.017 38.462 13.98 0.00 35.10 3.09
770 825 4.023193 GGGCAACATCCTAATTAATGTCGG 60.023 45.833 3.78 2.06 35.10 4.79
774 829 8.739972 GGTTATAGGGCAACATCCTAATTAATG 58.260 37.037 0.00 0.00 39.96 1.90
856 911 6.477688 TCGTTCTCAACTTTTCGTGTTAAGAT 59.522 34.615 0.00 0.00 0.00 2.40
859 914 6.036300 ACATCGTTCTCAACTTTTCGTGTTAA 59.964 34.615 0.00 0.00 0.00 2.01
878 934 0.895100 AGGGCATTTGTGCACATCGT 60.895 50.000 22.39 6.85 41.47 3.73
882 938 1.808531 GAGCAGGGCATTTGTGCACA 61.809 55.000 17.42 17.42 41.47 4.57
981 1038 1.556911 CTGGGAAGATAGTGTGCCAGT 59.443 52.381 3.28 0.00 45.55 4.00
989 1046 2.426842 GCTTTGGCTGGGAAGATAGT 57.573 50.000 0.00 0.00 35.22 2.12
1028 1085 7.228308 AGCCATTTCTATGCTTCTTGATAAGAC 59.772 37.037 0.00 0.00 37.23 3.01
1059 1116 1.301293 CCAAGGAGAAGTGGGAGCC 59.699 63.158 0.00 0.00 0.00 4.70
1147 1204 4.022464 TGTTCTTAACAGTTTTGCGGTG 57.978 40.909 0.00 0.00 36.25 4.94
1184 1241 3.017442 GCCACTACTTTCCCCTCAATTC 58.983 50.000 0.00 0.00 0.00 2.17
1191 1248 0.960861 GTGCAGCCACTACTTTCCCC 60.961 60.000 0.00 0.00 38.93 4.81
1215 1272 4.988598 AGCGTGGGTGCACCGAAG 62.989 66.667 29.08 27.13 44.64 3.79
1229 1286 8.973378 CCTCTTCTATTAGAACTCAATTAAGCG 58.027 37.037 1.90 0.00 29.89 4.68
1325 1386 2.793933 CGCCATCTTTTCTTCTGCATG 58.206 47.619 0.00 0.00 0.00 4.06
1326 1387 1.133790 GCGCCATCTTTTCTTCTGCAT 59.866 47.619 0.00 0.00 0.00 3.96
1385 1449 2.334838 GTTGTTGTCGTAGCCACCTAG 58.665 52.381 0.00 0.00 0.00 3.02
1386 1450 1.336148 CGTTGTTGTCGTAGCCACCTA 60.336 52.381 0.00 0.00 0.00 3.08
1387 1451 0.599204 CGTTGTTGTCGTAGCCACCT 60.599 55.000 0.00 0.00 0.00 4.00
1450 1517 6.239772 CCCCGTAATATTCACCTCAAGGATAA 60.240 42.308 2.30 0.00 38.94 1.75
1471 1538 1.582610 CCATTTTGACCGTCACCCCG 61.583 60.000 0.00 0.00 0.00 5.73
1478 1545 1.679153 GACAACCACCATTTTGACCGT 59.321 47.619 0.00 0.00 0.00 4.83
1538 1605 7.043059 CGAGCAGATAAAGACACTCCTTATTTC 60.043 40.741 0.00 0.00 0.00 2.17
1549 1616 1.472878 ACGCTCGAGCAGATAAAGACA 59.527 47.619 34.69 0.00 42.21 3.41
1555 1622 1.399440 ACGTAAACGCTCGAGCAGATA 59.601 47.619 34.69 20.87 44.43 1.98
1574 1641 0.671781 CATATCGGCCCTGCTAGCAC 60.672 60.000 14.93 4.03 0.00 4.40
1617 1684 5.004922 TGCATACACAAGTGATCATACGA 57.995 39.130 7.28 0.00 0.00 3.43
1618 1685 5.463061 TCATGCATACACAAGTGATCATACG 59.537 40.000 7.28 0.00 0.00 3.06
1619 1686 6.258507 TGTCATGCATACACAAGTGATCATAC 59.741 38.462 7.28 0.00 0.00 2.39
1651 1718 6.778559 TGCCACCATACCTAAAACTAAAAGTT 59.221 34.615 0.00 0.00 40.80 2.66
1657 1724 4.255301 CGTTGCCACCATACCTAAAACTA 58.745 43.478 0.00 0.00 0.00 2.24
1658 1725 3.078837 CGTTGCCACCATACCTAAAACT 58.921 45.455 0.00 0.00 0.00 2.66
1659 1726 2.162809 CCGTTGCCACCATACCTAAAAC 59.837 50.000 0.00 0.00 0.00 2.43
1660 1727 2.224818 ACCGTTGCCACCATACCTAAAA 60.225 45.455 0.00 0.00 0.00 1.52
1661 1728 1.351683 ACCGTTGCCACCATACCTAAA 59.648 47.619 0.00 0.00 0.00 1.85
1662 1729 0.985760 ACCGTTGCCACCATACCTAA 59.014 50.000 0.00 0.00 0.00 2.69
1666 1733 2.043980 CCCACCGTTGCCACCATAC 61.044 63.158 0.00 0.00 0.00 2.39
1702 1771 3.494626 GTGCACCTATGGATATGTGTTCG 59.505 47.826 5.22 0.00 33.29 3.95
1718 1787 3.951663 ACTAACTGGAAATAGGTGCACC 58.048 45.455 29.22 29.22 0.00 5.01
1719 1788 5.959618 AAACTAACTGGAAATAGGTGCAC 57.040 39.130 8.80 8.80 0.00 4.57
1758 1827 8.472413 GGGATGTGTTCATAAACTAGTACTGTA 58.528 37.037 5.39 0.00 36.30 2.74
1759 1828 7.328737 GGGATGTGTTCATAAACTAGTACTGT 58.671 38.462 5.39 0.00 36.30 3.55
1760 1829 6.761714 GGGGATGTGTTCATAAACTAGTACTG 59.238 42.308 5.39 0.00 36.30 2.74
1761 1830 6.406624 CGGGGATGTGTTCATAAACTAGTACT 60.407 42.308 0.00 0.00 36.30 2.73
1762 1831 5.751990 CGGGGATGTGTTCATAAACTAGTAC 59.248 44.000 0.00 0.00 36.30 2.73
1763 1832 5.682990 GCGGGGATGTGTTCATAAACTAGTA 60.683 44.000 0.00 0.00 36.30 1.82
1764 1833 4.766375 CGGGGATGTGTTCATAAACTAGT 58.234 43.478 0.00 0.00 36.30 2.57
1765 1834 3.560068 GCGGGGATGTGTTCATAAACTAG 59.440 47.826 0.00 0.00 36.30 2.57
1767 1836 2.365582 GCGGGGATGTGTTCATAAACT 58.634 47.619 0.00 0.00 36.30 2.66
1768 1837 1.404035 GGCGGGGATGTGTTCATAAAC 59.596 52.381 0.00 0.00 34.06 2.01
1769 1838 1.757682 GGCGGGGATGTGTTCATAAA 58.242 50.000 0.00 0.00 34.06 1.40
1786 3117 2.967615 GTCCATAAGAGGCGCGGC 60.968 66.667 27.06 27.06 0.00 6.53
1788 3119 1.300233 GAGGTCCATAAGAGGCGCG 60.300 63.158 0.00 0.00 0.00 6.86
1789 3120 0.530870 GTGAGGTCCATAAGAGGCGC 60.531 60.000 0.00 0.00 0.00 6.53
1790 3121 0.249073 CGTGAGGTCCATAAGAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
1806 3137 2.119457 GCTCAAGTTTTTCAAGCCGTG 58.881 47.619 0.00 0.00 0.00 4.94
1811 3142 7.059945 CGCTTTATAGTGCTCAAGTTTTTCAAG 59.940 37.037 0.00 0.00 0.00 3.02
1815 3146 5.240844 ACCGCTTTATAGTGCTCAAGTTTTT 59.759 36.000 0.00 0.00 0.00 1.94
1819 3150 3.611766 ACCGCTTTATAGTGCTCAAGT 57.388 42.857 0.00 0.00 0.00 3.16
1824 3155 5.731591 AGAACTTAACCGCTTTATAGTGCT 58.268 37.500 0.00 0.00 0.00 4.40
1828 3159 7.073342 AGCAAAGAACTTAACCGCTTTATAG 57.927 36.000 0.00 0.00 0.00 1.31
1836 3167 5.229260 GTCAACAAAGCAAAGAACTTAACCG 59.771 40.000 0.00 0.00 0.00 4.44
1843 3174 7.985634 TCAAATAGTCAACAAAGCAAAGAAC 57.014 32.000 0.00 0.00 0.00 3.01
1850 3181 9.860898 AATCCTATTTCAAATAGTCAACAAAGC 57.139 29.630 14.81 0.00 0.00 3.51
1855 3186 9.704098 GTCGAAATCCTATTTCAAATAGTCAAC 57.296 33.333 14.81 0.00 0.00 3.18
1856 3187 9.667107 AGTCGAAATCCTATTTCAAATAGTCAA 57.333 29.630 14.81 2.39 0.00 3.18
1862 3193 7.396540 AAGCAGTCGAAATCCTATTTCAAAT 57.603 32.000 11.69 0.00 0.00 2.32
1866 3197 7.852945 CACAATAAGCAGTCGAAATCCTATTTC 59.147 37.037 2.88 2.88 0.00 2.17
1867 3198 7.201732 CCACAATAAGCAGTCGAAATCCTATTT 60.202 37.037 0.00 0.00 0.00 1.40
1870 3201 5.116180 CCACAATAAGCAGTCGAAATCCTA 58.884 41.667 0.00 0.00 0.00 2.94
1872 3203 3.487544 GCCACAATAAGCAGTCGAAATCC 60.488 47.826 0.00 0.00 0.00 3.01
1873 3204 3.487544 GGCCACAATAAGCAGTCGAAATC 60.488 47.826 0.00 0.00 0.00 2.17
1875 3206 1.810151 GGCCACAATAAGCAGTCGAAA 59.190 47.619 0.00 0.00 0.00 3.46
1876 3207 1.003118 AGGCCACAATAAGCAGTCGAA 59.997 47.619 5.01 0.00 0.00 3.71
1877 3208 0.613260 AGGCCACAATAAGCAGTCGA 59.387 50.000 5.01 0.00 0.00 4.20
1878 3209 2.309528 TAGGCCACAATAAGCAGTCG 57.690 50.000 5.01 0.00 0.00 4.18
1881 3212 6.369059 GCATATATAGGCCACAATAAGCAG 57.631 41.667 5.01 0.00 0.00 4.24
1893 3224 4.336889 TGGATAAGCGGCATATATAGGC 57.663 45.455 10.90 10.90 0.00 3.93
1894 3225 7.047891 TCTTTTGGATAAGCGGCATATATAGG 58.952 38.462 1.45 0.00 0.00 2.57
1897 3228 6.711277 TCTCTTTTGGATAAGCGGCATATAT 58.289 36.000 1.45 0.00 0.00 0.86
1898 3229 6.109156 TCTCTTTTGGATAAGCGGCATATA 57.891 37.500 1.45 0.00 0.00 0.86
1901 3232 3.209410 CTCTCTTTTGGATAAGCGGCAT 58.791 45.455 1.45 0.00 0.00 4.40
1904 3235 2.611292 CTGCTCTCTTTTGGATAAGCGG 59.389 50.000 0.00 0.00 36.21 5.52
1905 3236 3.525537 TCTGCTCTCTTTTGGATAAGCG 58.474 45.455 0.00 0.00 36.21 4.68
1906 3237 5.821995 AGATTCTGCTCTCTTTTGGATAAGC 59.178 40.000 0.00 0.00 34.90 3.09
1907 3238 7.862512 AAGATTCTGCTCTCTTTTGGATAAG 57.137 36.000 0.00 0.00 0.00 1.73
1908 3239 7.121759 CCAAAGATTCTGCTCTCTTTTGGATAA 59.878 37.037 7.17 0.00 39.15 1.75
1910 3241 5.418209 CCAAAGATTCTGCTCTCTTTTGGAT 59.582 40.000 7.17 0.00 39.15 3.41
1911 3242 4.763793 CCAAAGATTCTGCTCTCTTTTGGA 59.236 41.667 7.17 0.00 39.15 3.53
1912 3243 4.522022 ACCAAAGATTCTGCTCTCTTTTGG 59.478 41.667 10.57 10.57 39.15 3.28
1913 3244 5.702349 ACCAAAGATTCTGCTCTCTTTTG 57.298 39.130 0.00 0.00 39.15 2.44
1914 3245 5.829924 TGAACCAAAGATTCTGCTCTCTTTT 59.170 36.000 0.00 0.00 39.15 2.27
1915 3246 5.380043 TGAACCAAAGATTCTGCTCTCTTT 58.620 37.500 0.00 0.00 41.24 2.52
1917 3248 4.630644 TGAACCAAAGATTCTGCTCTCT 57.369 40.909 0.00 0.00 0.00 3.10
1918 3249 5.184711 AGATGAACCAAAGATTCTGCTCTC 58.815 41.667 0.00 0.00 0.00 3.20
1919 3250 5.045724 AGAGATGAACCAAAGATTCTGCTCT 60.046 40.000 0.00 0.00 34.93 4.09
1920 3251 5.184711 AGAGATGAACCAAAGATTCTGCTC 58.815 41.667 0.00 0.00 32.19 4.26
1921 3252 5.176741 AGAGATGAACCAAAGATTCTGCT 57.823 39.130 0.00 0.00 0.00 4.24
1922 3253 5.647225 AGAAGAGATGAACCAAAGATTCTGC 59.353 40.000 0.00 0.00 0.00 4.26
1923 3254 6.315891 GGAGAAGAGATGAACCAAAGATTCTG 59.684 42.308 0.00 0.00 0.00 3.02
1924 3255 6.013032 TGGAGAAGAGATGAACCAAAGATTCT 60.013 38.462 0.00 0.00 0.00 2.40
1931 4593 4.103153 ACACTTGGAGAAGAGATGAACCAA 59.897 41.667 0.00 0.00 36.27 3.67
1951 4613 0.803117 GCCTTAAAGGGAAGCGACAC 59.197 55.000 0.00 0.00 35.37 3.67
1957 4619 3.169512 TCCCAAAGCCTTAAAGGGAAG 57.830 47.619 9.16 0.00 45.19 3.46
1961 4623 3.619733 GCCAAATCCCAAAGCCTTAAAGG 60.620 47.826 0.00 0.00 38.80 3.11
1972 4634 2.291540 CCACTCCTTAGCCAAATCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
2002 4664 6.072838 GGCACATGGATATGTCAATGTTCTAG 60.073 42.308 9.63 0.97 44.85 2.43
2003 4665 5.764686 GGCACATGGATATGTCAATGTTCTA 59.235 40.000 9.63 0.00 44.85 2.10
2040 4702 6.090898 CGAGTTAACCCACAACTCTTTGATAG 59.909 42.308 12.04 0.00 46.35 2.08
2068 4730 8.246180 GCTTTCATATTTGGAATTCTCTTGTCA 58.754 33.333 5.23 0.00 0.00 3.58
2099 4761 0.804989 ATGAGCGCAGTTGGTAAAGC 59.195 50.000 11.47 0.00 0.00 3.51
2103 4765 3.000041 CAACTAATGAGCGCAGTTGGTA 59.000 45.455 22.95 3.25 43.42 3.25
2106 4768 2.076100 TCCAACTAATGAGCGCAGTTG 58.924 47.619 23.46 23.46 45.59 3.16
2127 4789 5.390461 CGCACGTTCCTCTCATTCAAAATAA 60.390 40.000 0.00 0.00 0.00 1.40
2136 4798 0.033504 AACACGCACGTTCCTCTCAT 59.966 50.000 0.00 0.00 0.00 2.90
2172 4834 1.303317 AACAGGATTGGCGGTGGTC 60.303 57.895 0.00 0.00 0.00 4.02
2199 4861 4.446311 CCGGGGAATTTGATCTACCAAGAT 60.446 45.833 0.00 0.00 45.46 2.40
2200 4862 3.118038 CCGGGGAATTTGATCTACCAAGA 60.118 47.826 0.00 0.00 35.80 3.02
2201 4863 3.118038 TCCGGGGAATTTGATCTACCAAG 60.118 47.826 0.00 0.00 0.00 3.61
2202 4864 2.847449 TCCGGGGAATTTGATCTACCAA 59.153 45.455 0.00 0.00 0.00 3.67
2203 4865 2.438021 CTCCGGGGAATTTGATCTACCA 59.562 50.000 0.00 0.00 0.00 3.25
2204 4866 2.704065 TCTCCGGGGAATTTGATCTACC 59.296 50.000 0.00 0.00 0.00 3.18
2205 4867 3.244249 CCTCTCCGGGGAATTTGATCTAC 60.244 52.174 5.02 0.00 0.00 2.59
2206 4868 2.972713 CCTCTCCGGGGAATTTGATCTA 59.027 50.000 5.02 0.00 0.00 1.98
2207 4869 1.771255 CCTCTCCGGGGAATTTGATCT 59.229 52.381 5.02 0.00 0.00 2.75
2208 4870 1.490910 ACCTCTCCGGGGAATTTGATC 59.509 52.381 5.02 0.00 36.97 2.92
2209 4871 1.212935 CACCTCTCCGGGGAATTTGAT 59.787 52.381 5.02 0.00 39.13 2.57
2210 4872 0.618458 CACCTCTCCGGGGAATTTGA 59.382 55.000 5.02 0.00 39.13 2.69
2211 4873 1.032114 GCACCTCTCCGGGGAATTTG 61.032 60.000 5.02 3.57 39.13 2.32
2212 4874 1.303282 GCACCTCTCCGGGGAATTT 59.697 57.895 5.02 0.00 39.13 1.82
2213 4875 1.915078 CTGCACCTCTCCGGGGAATT 61.915 60.000 5.02 0.00 39.13 2.17
2214 4876 2.285368 TGCACCTCTCCGGGGAAT 60.285 61.111 5.02 0.00 39.13 3.01
2215 4877 3.003173 CTGCACCTCTCCGGGGAA 61.003 66.667 5.02 0.00 39.13 3.97
2218 4880 4.020617 TTGCTGCACCTCTCCGGG 62.021 66.667 0.00 0.00 36.97 5.73
2219 4881 2.743928 GTTGCTGCACCTCTCCGG 60.744 66.667 0.00 0.00 39.35 5.14
2220 4882 2.031012 TGTTGCTGCACCTCTCCG 59.969 61.111 0.00 0.00 0.00 4.63
2221 4883 1.227943 TGTGTTGCTGCACCTCTCC 60.228 57.895 0.00 0.00 38.52 3.71
2222 4884 1.835483 CGTGTGTTGCTGCACCTCTC 61.835 60.000 0.00 0.00 38.52 3.20
2223 4885 1.889105 CGTGTGTTGCTGCACCTCT 60.889 57.895 0.00 0.00 38.52 3.69
2224 4886 0.878523 TACGTGTGTTGCTGCACCTC 60.879 55.000 0.00 0.00 38.52 3.85
2225 4887 1.145156 TACGTGTGTTGCTGCACCT 59.855 52.632 0.00 0.00 38.52 4.00
2226 4888 1.278637 GTACGTGTGTTGCTGCACC 59.721 57.895 0.00 0.00 38.52 5.01
2227 4889 1.083657 CGTACGTGTGTTGCTGCAC 60.084 57.895 7.22 0.00 39.65 4.57
2228 4890 1.519676 ACGTACGTGTGTTGCTGCA 60.520 52.632 22.14 0.00 0.00 4.41
2229 4891 1.083657 CACGTACGTGTGTTGCTGC 60.084 57.895 34.48 0.00 40.91 5.25
2239 4901 2.079158 TGAGCTAGCTTACACGTACGT 58.921 47.619 20.42 16.72 0.00 3.57
2240 4902 2.819422 TGAGCTAGCTTACACGTACG 57.181 50.000 20.42 15.01 0.00 3.67
2241 4903 4.730657 TCTTTGAGCTAGCTTACACGTAC 58.269 43.478 20.42 3.61 0.00 3.67
2242 4904 5.381174 TTCTTTGAGCTAGCTTACACGTA 57.619 39.130 20.42 0.00 0.00 3.57
2243 4905 3.936372 TCTTTGAGCTAGCTTACACGT 57.064 42.857 20.42 0.00 0.00 4.49
2244 4906 3.061429 GCTTCTTTGAGCTAGCTTACACG 59.939 47.826 20.42 7.07 39.57 4.49
2245 4907 3.997021 TGCTTCTTTGAGCTAGCTTACAC 59.003 43.478 20.42 6.44 43.11 2.90
2246 4908 4.271696 TGCTTCTTTGAGCTAGCTTACA 57.728 40.909 20.42 10.58 43.11 2.41
2247 4909 4.142795 GGTTGCTTCTTTGAGCTAGCTTAC 60.143 45.833 20.42 7.66 43.11 2.34
2248 4910 4.003648 GGTTGCTTCTTTGAGCTAGCTTA 58.996 43.478 20.42 12.72 43.11 3.09
2249 4911 2.816672 GGTTGCTTCTTTGAGCTAGCTT 59.183 45.455 20.42 2.06 43.11 3.74
2250 4912 2.224621 TGGTTGCTTCTTTGAGCTAGCT 60.225 45.455 19.45 19.45 43.16 3.32
2251 4913 2.154462 TGGTTGCTTCTTTGAGCTAGC 58.846 47.619 6.62 6.62 43.09 3.42
2252 4914 3.365767 GCTTGGTTGCTTCTTTGAGCTAG 60.366 47.826 0.00 0.00 43.11 3.42
2253 4915 2.554032 GCTTGGTTGCTTCTTTGAGCTA 59.446 45.455 0.00 0.00 43.11 3.32
2254 4916 1.339291 GCTTGGTTGCTTCTTTGAGCT 59.661 47.619 0.00 0.00 43.11 4.09
2255 4917 1.339291 AGCTTGGTTGCTTCTTTGAGC 59.661 47.619 0.00 0.00 40.93 4.26
2256 4918 3.817647 ACTAGCTTGGTTGCTTCTTTGAG 59.182 43.478 0.00 0.00 43.74 3.02
2257 4919 3.820557 ACTAGCTTGGTTGCTTCTTTGA 58.179 40.909 0.00 0.00 43.74 2.69
2258 4920 4.378874 GCTACTAGCTTGGTTGCTTCTTTG 60.379 45.833 14.73 0.00 43.74 2.77
2259 4921 3.753797 GCTACTAGCTTGGTTGCTTCTTT 59.246 43.478 14.73 0.00 43.74 2.52
2260 4922 3.339141 GCTACTAGCTTGGTTGCTTCTT 58.661 45.455 14.73 0.00 43.74 2.52
2261 4923 2.979240 GCTACTAGCTTGGTTGCTTCT 58.021 47.619 14.73 0.00 43.74 2.85
2273 4935 7.039644 TCCCTGTAGATCAATTAAGCTACTAGC 60.040 40.741 5.64 0.00 42.84 3.42
2274 4936 8.410673 TCCCTGTAGATCAATTAAGCTACTAG 57.589 38.462 5.64 2.14 35.45 2.57
2275 4937 8.639761 GTTCCCTGTAGATCAATTAAGCTACTA 58.360 37.037 5.64 0.00 35.45 1.82
2276 4938 7.345914 AGTTCCCTGTAGATCAATTAAGCTACT 59.654 37.037 5.64 0.00 35.45 2.57
2277 4939 7.501844 AGTTCCCTGTAGATCAATTAAGCTAC 58.498 38.462 0.00 0.00 35.09 3.58
2278 4940 7.676683 AGTTCCCTGTAGATCAATTAAGCTA 57.323 36.000 0.00 0.00 0.00 3.32
2279 4941 6.567602 AGTTCCCTGTAGATCAATTAAGCT 57.432 37.500 0.00 0.00 0.00 3.74
2280 4942 7.501844 ACTAGTTCCCTGTAGATCAATTAAGC 58.498 38.462 0.00 0.00 0.00 3.09
2281 4943 9.319143 CAACTAGTTCCCTGTAGATCAATTAAG 57.681 37.037 4.77 0.00 0.00 1.85
2282 4944 8.822805 ACAACTAGTTCCCTGTAGATCAATTAA 58.177 33.333 4.77 0.00 0.00 1.40
2283 4945 8.375493 ACAACTAGTTCCCTGTAGATCAATTA 57.625 34.615 4.77 0.00 0.00 1.40
2284 4946 7.259088 ACAACTAGTTCCCTGTAGATCAATT 57.741 36.000 4.77 0.00 0.00 2.32
2285 4947 6.875972 ACAACTAGTTCCCTGTAGATCAAT 57.124 37.500 4.77 0.00 0.00 2.57
2286 4948 6.127423 GCTACAACTAGTTCCCTGTAGATCAA 60.127 42.308 26.11 1.43 42.47 2.57
2287 4949 5.360144 GCTACAACTAGTTCCCTGTAGATCA 59.640 44.000 26.11 2.01 42.47 2.92
2288 4950 5.221283 GGCTACAACTAGTTCCCTGTAGATC 60.221 48.000 26.11 17.01 42.47 2.75
2289 4951 4.650131 GGCTACAACTAGTTCCCTGTAGAT 59.350 45.833 26.11 0.00 42.47 1.98
2290 4952 4.021916 GGCTACAACTAGTTCCCTGTAGA 58.978 47.826 26.11 3.18 42.47 2.59
2291 4953 4.024670 AGGCTACAACTAGTTCCCTGTAG 58.975 47.826 20.86 20.86 42.66 2.74
2292 4954 4.021916 GAGGCTACAACTAGTTCCCTGTA 58.978 47.826 4.77 5.10 31.88 2.74
2293 4955 2.832733 GAGGCTACAACTAGTTCCCTGT 59.167 50.000 4.77 4.06 31.88 4.00
2294 4956 3.100671 AGAGGCTACAACTAGTTCCCTG 58.899 50.000 4.77 0.00 31.88 4.45
2295 4957 3.367321 GAGAGGCTACAACTAGTTCCCT 58.633 50.000 4.77 9.02 33.69 4.20
2296 4958 2.099427 CGAGAGGCTACAACTAGTTCCC 59.901 54.545 4.77 4.25 0.00 3.97
2297 4959 2.754002 ACGAGAGGCTACAACTAGTTCC 59.246 50.000 4.77 3.97 0.00 3.62
2298 4960 4.167268 CAACGAGAGGCTACAACTAGTTC 58.833 47.826 4.77 0.00 29.93 3.01
2299 4961 3.614390 GCAACGAGAGGCTACAACTAGTT 60.614 47.826 1.12 1.12 31.82 2.24
2300 4962 2.094649 GCAACGAGAGGCTACAACTAGT 60.095 50.000 0.00 0.00 0.00 2.57
2301 4963 2.531206 GCAACGAGAGGCTACAACTAG 58.469 52.381 0.00 0.00 0.00 2.57
2302 4964 1.135489 CGCAACGAGAGGCTACAACTA 60.135 52.381 0.00 0.00 0.00 2.24
2303 4965 0.388649 CGCAACGAGAGGCTACAACT 60.389 55.000 0.00 0.00 0.00 3.16
2304 4966 0.666577 ACGCAACGAGAGGCTACAAC 60.667 55.000 0.00 0.00 0.00 3.32
2305 4967 0.666274 CACGCAACGAGAGGCTACAA 60.666 55.000 0.00 0.00 0.00 2.41
2306 4968 1.080772 CACGCAACGAGAGGCTACA 60.081 57.895 0.00 0.00 0.00 2.74
2307 4969 1.805945 CCACGCAACGAGAGGCTAC 60.806 63.158 0.00 0.00 0.00 3.58
2308 4970 1.934220 CTCCACGCAACGAGAGGCTA 61.934 60.000 0.00 0.00 31.31 3.93
2309 4971 3.288308 CTCCACGCAACGAGAGGCT 62.288 63.158 0.00 0.00 31.31 4.58
2310 4972 2.811317 CTCCACGCAACGAGAGGC 60.811 66.667 0.00 0.00 31.31 4.70
2311 4973 2.811317 GCTCCACGCAACGAGAGG 60.811 66.667 11.59 3.71 38.92 3.69
2320 4982 2.584694 GCTAGAGCTGCTCCACGC 60.585 66.667 25.09 19.97 38.21 5.34
2330 4992 0.170116 CGATCCGATCCAGCTAGAGC 59.830 60.000 2.69 0.00 42.49 4.09
2331 4993 1.814793 TCGATCCGATCCAGCTAGAG 58.185 55.000 2.69 0.00 0.00 2.43
2332 4994 2.498644 ATCGATCCGATCCAGCTAGA 57.501 50.000 2.69 0.00 43.45 2.43
2342 5004 3.318886 CGAAGAGAGTAGATCGATCCGA 58.681 50.000 21.66 7.65 41.13 4.55
2343 5005 2.413796 CCGAAGAGAGTAGATCGATCCG 59.586 54.545 21.66 13.69 37.48 4.18
2344 5006 3.666274 TCCGAAGAGAGTAGATCGATCC 58.334 50.000 21.66 7.65 37.48 3.36
2345 5007 4.512198 TGTTCCGAAGAGAGTAGATCGATC 59.488 45.833 17.91 17.91 37.48 3.69
2346 5008 4.273969 GTGTTCCGAAGAGAGTAGATCGAT 59.726 45.833 0.00 0.00 37.48 3.59
2347 5009 3.622163 GTGTTCCGAAGAGAGTAGATCGA 59.378 47.826 0.00 0.00 37.48 3.59
2348 5010 3.623960 AGTGTTCCGAAGAGAGTAGATCG 59.376 47.826 0.00 0.00 35.19 3.69
2349 5011 5.336744 CAAGTGTTCCGAAGAGAGTAGATC 58.663 45.833 0.00 0.00 0.00 2.75
2350 5012 4.381079 GCAAGTGTTCCGAAGAGAGTAGAT 60.381 45.833 0.00 0.00 0.00 1.98
2351 5013 3.057456 GCAAGTGTTCCGAAGAGAGTAGA 60.057 47.826 0.00 0.00 0.00 2.59
2352 5014 3.246619 GCAAGTGTTCCGAAGAGAGTAG 58.753 50.000 0.00 0.00 0.00 2.57
2353 5015 2.351447 CGCAAGTGTTCCGAAGAGAGTA 60.351 50.000 0.00 0.00 0.00 2.59
2354 5016 1.603172 CGCAAGTGTTCCGAAGAGAGT 60.603 52.381 0.00 0.00 0.00 3.24
2355 5017 1.063806 CGCAAGTGTTCCGAAGAGAG 58.936 55.000 0.00 0.00 0.00 3.20
2356 5018 0.319555 CCGCAAGTGTTCCGAAGAGA 60.320 55.000 0.00 0.00 0.00 3.10
2357 5019 1.901650 GCCGCAAGTGTTCCGAAGAG 61.902 60.000 0.00 0.00 0.00 2.85
2358 5020 1.959226 GCCGCAAGTGTTCCGAAGA 60.959 57.895 0.00 0.00 0.00 2.87
2359 5021 2.556287 GCCGCAAGTGTTCCGAAG 59.444 61.111 0.00 0.00 0.00 3.79
2360 5022 3.342627 CGCCGCAAGTGTTCCGAA 61.343 61.111 0.00 0.00 0.00 4.30
2361 5023 4.287781 TCGCCGCAAGTGTTCCGA 62.288 61.111 0.00 0.00 0.00 4.55
2362 5024 4.072088 GTCGCCGCAAGTGTTCCG 62.072 66.667 0.00 0.00 0.00 4.30
2363 5025 2.171489 GAAGTCGCCGCAAGTGTTCC 62.171 60.000 0.00 0.00 0.00 3.62
2364 5026 1.204312 GAAGTCGCCGCAAGTGTTC 59.796 57.895 0.00 0.00 0.00 3.18
2365 5027 2.251642 GGAAGTCGCCGCAAGTGTT 61.252 57.895 0.00 0.00 0.00 3.32
2366 5028 2.665185 GGAAGTCGCCGCAAGTGT 60.665 61.111 0.00 0.00 0.00 3.55
2367 5029 3.777925 CGGAAGTCGCCGCAAGTG 61.778 66.667 0.00 0.00 45.38 3.16
2375 5037 1.005294 TCGCAAGTTACGGAAGTCGC 61.005 55.000 0.00 0.00 42.29 5.19
2376 5038 1.123756 GTTCGCAAGTTACGGAAGTCG 59.876 52.381 0.00 0.00 42.29 4.18
2377 5039 1.123756 CGTTCGCAAGTTACGGAAGTC 59.876 52.381 0.00 0.00 42.29 3.01
2378 5040 1.134226 CGTTCGCAAGTTACGGAAGT 58.866 50.000 0.00 0.00 44.18 3.01
2379 5041 1.411394 TCGTTCGCAAGTTACGGAAG 58.589 50.000 0.00 0.00 43.10 3.46
2380 5042 2.068837 ATCGTTCGCAAGTTACGGAA 57.931 45.000 0.00 0.00 43.10 4.30
2381 5043 2.917701 TATCGTTCGCAAGTTACGGA 57.082 45.000 0.00 0.00 43.10 4.69
2382 5044 3.976468 TTTATCGTTCGCAAGTTACGG 57.024 42.857 0.00 0.00 43.10 4.02
2383 5045 4.774549 CAGTTTTATCGTTCGCAAGTTACG 59.225 41.667 0.00 0.00 43.80 3.18
2384 5046 5.908106 TCAGTTTTATCGTTCGCAAGTTAC 58.092 37.500 0.00 0.00 39.48 2.50
2385 5047 6.453265 CGATCAGTTTTATCGTTCGCAAGTTA 60.453 38.462 0.00 0.00 40.97 2.24
2386 5048 5.607119 ATCAGTTTTATCGTTCGCAAGTT 57.393 34.783 0.00 0.00 39.48 2.66
2387 5049 4.201589 CGATCAGTTTTATCGTTCGCAAGT 60.202 41.667 0.00 0.00 40.97 3.16
2388 5050 4.031314 TCGATCAGTTTTATCGTTCGCAAG 59.969 41.667 5.50 0.00 45.01 4.01
2389 5051 3.921630 TCGATCAGTTTTATCGTTCGCAA 59.078 39.130 5.50 0.00 45.01 4.85
2390 5052 3.503891 TCGATCAGTTTTATCGTTCGCA 58.496 40.909 5.50 0.00 45.01 5.10
2391 5053 4.437440 CATCGATCAGTTTTATCGTTCGC 58.563 43.478 0.00 0.00 45.01 4.70
2392 5054 4.606232 GCCATCGATCAGTTTTATCGTTCG 60.606 45.833 0.00 0.00 45.01 3.95
2393 5055 4.318831 GGCCATCGATCAGTTTTATCGTTC 60.319 45.833 0.00 0.00 45.01 3.95
2394 5056 3.560068 GGCCATCGATCAGTTTTATCGTT 59.440 43.478 0.00 0.00 45.01 3.85
2395 5057 3.131396 GGCCATCGATCAGTTTTATCGT 58.869 45.455 0.00 0.00 45.01 3.73
2396 5058 3.130633 TGGCCATCGATCAGTTTTATCG 58.869 45.455 0.00 0.00 45.88 2.92
2397 5059 5.499139 TTTGGCCATCGATCAGTTTTATC 57.501 39.130 6.09 0.00 0.00 1.75
2398 5060 6.469782 AATTTGGCCATCGATCAGTTTTAT 57.530 33.333 6.09 0.00 0.00 1.40
2399 5061 5.913137 AATTTGGCCATCGATCAGTTTTA 57.087 34.783 6.09 0.00 0.00 1.52
2400 5062 4.806640 AATTTGGCCATCGATCAGTTTT 57.193 36.364 6.09 0.00 0.00 2.43
2401 5063 5.913137 TTAATTTGGCCATCGATCAGTTT 57.087 34.783 6.09 0.00 0.00 2.66
2402 5064 5.163519 CCTTTAATTTGGCCATCGATCAGTT 60.164 40.000 6.09 0.00 0.00 3.16
2403 5065 4.339247 CCTTTAATTTGGCCATCGATCAGT 59.661 41.667 6.09 0.00 0.00 3.41
2404 5066 4.794003 GCCTTTAATTTGGCCATCGATCAG 60.794 45.833 6.09 0.00 43.11 2.90
2405 5067 3.068024 GCCTTTAATTTGGCCATCGATCA 59.932 43.478 6.09 0.00 43.11 2.92
2406 5068 3.642705 GCCTTTAATTTGGCCATCGATC 58.357 45.455 6.09 0.00 43.11 3.69
2407 5069 3.733443 GCCTTTAATTTGGCCATCGAT 57.267 42.857 6.09 0.00 43.11 3.59
2414 5076 6.176723 CTCCACAGGAGCCTTTAATTTGGC 62.177 50.000 0.00 8.26 43.29 4.52
2415 5077 3.430453 TCCACAGGAGCCTTTAATTTGG 58.570 45.455 0.00 0.00 0.00 3.28
2416 5078 4.708726 CTCCACAGGAGCCTTTAATTTG 57.291 45.455 0.00 0.00 43.29 2.32
2428 5090 2.746279 TTTTGAAAGGCTCCACAGGA 57.254 45.000 0.00 0.00 0.00 3.86
2429 5091 3.575687 AGATTTTTGAAAGGCTCCACAGG 59.424 43.478 0.00 0.00 0.00 4.00
2430 5092 4.861102 AGATTTTTGAAAGGCTCCACAG 57.139 40.909 0.00 0.00 0.00 3.66
2431 5093 5.612725 AAAGATTTTTGAAAGGCTCCACA 57.387 34.783 0.00 0.00 0.00 4.17
2432 5094 7.360353 GCAATAAAGATTTTTGAAAGGCTCCAC 60.360 37.037 0.00 0.00 0.00 4.02
2433 5095 6.650390 GCAATAAAGATTTTTGAAAGGCTCCA 59.350 34.615 0.00 0.00 0.00 3.86
2434 5096 6.875726 AGCAATAAAGATTTTTGAAAGGCTCC 59.124 34.615 0.00 0.00 0.00 4.70
2435 5097 7.895975 AGCAATAAAGATTTTTGAAAGGCTC 57.104 32.000 0.00 0.00 0.00 4.70
2436 5098 8.681486 AAAGCAATAAAGATTTTTGAAAGGCT 57.319 26.923 0.00 0.00 0.00 4.58
2437 5099 9.385902 GAAAAGCAATAAAGATTTTTGAAAGGC 57.614 29.630 0.00 0.00 37.24 4.35
2447 5109 9.750125 ACGAAAAAGAGAAAAGCAATAAAGATT 57.250 25.926 0.00 0.00 0.00 2.40
2448 5110 9.750125 AACGAAAAAGAGAAAAGCAATAAAGAT 57.250 25.926 0.00 0.00 0.00 2.40
2449 5111 9.019764 CAACGAAAAAGAGAAAAGCAATAAAGA 57.980 29.630 0.00 0.00 0.00 2.52
2450 5112 8.807581 ACAACGAAAAAGAGAAAAGCAATAAAG 58.192 29.630 0.00 0.00 0.00 1.85
2451 5113 8.591312 CACAACGAAAAAGAGAAAAGCAATAAA 58.409 29.630 0.00 0.00 0.00 1.40
2452 5114 7.757624 ACACAACGAAAAAGAGAAAAGCAATAA 59.242 29.630 0.00 0.00 0.00 1.40
2453 5115 7.254852 ACACAACGAAAAAGAGAAAAGCAATA 58.745 30.769 0.00 0.00 0.00 1.90
2454 5116 6.099341 ACACAACGAAAAAGAGAAAAGCAAT 58.901 32.000 0.00 0.00 0.00 3.56
2455 5117 5.465935 ACACAACGAAAAAGAGAAAAGCAA 58.534 33.333 0.00 0.00 0.00 3.91
2456 5118 5.054390 ACACAACGAAAAAGAGAAAAGCA 57.946 34.783 0.00 0.00 0.00 3.91
2457 5119 6.525280 TGTAACACAACGAAAAAGAGAAAAGC 59.475 34.615 0.00 0.00 0.00 3.51
2458 5120 8.442605 TTGTAACACAACGAAAAAGAGAAAAG 57.557 30.769 0.00 0.00 32.34 2.27
2459 5121 7.539366 CCTTGTAACACAACGAAAAAGAGAAAA 59.461 33.333 0.00 0.00 33.96 2.29
2460 5122 7.024768 CCTTGTAACACAACGAAAAAGAGAAA 58.975 34.615 0.00 0.00 33.96 2.52
2461 5123 6.372103 TCCTTGTAACACAACGAAAAAGAGAA 59.628 34.615 0.00 0.00 33.96 2.87
2462 5124 5.875910 TCCTTGTAACACAACGAAAAAGAGA 59.124 36.000 0.00 0.00 33.96 3.10
2463 5125 5.963586 GTCCTTGTAACACAACGAAAAAGAG 59.036 40.000 0.00 0.00 33.96 2.85
2464 5126 5.411977 TGTCCTTGTAACACAACGAAAAAGA 59.588 36.000 0.00 0.00 33.96 2.52
2465 5127 5.632959 TGTCCTTGTAACACAACGAAAAAG 58.367 37.500 0.00 0.00 33.96 2.27
2466 5128 5.392165 CCTGTCCTTGTAACACAACGAAAAA 60.392 40.000 0.00 0.00 33.96 1.94
2467 5129 4.095185 CCTGTCCTTGTAACACAACGAAAA 59.905 41.667 0.00 0.00 33.96 2.29
2468 5130 3.623960 CCTGTCCTTGTAACACAACGAAA 59.376 43.478 0.00 0.00 33.96 3.46
2469 5131 3.199677 CCTGTCCTTGTAACACAACGAA 58.800 45.455 0.00 0.00 33.96 3.85
2470 5132 2.484065 CCCTGTCCTTGTAACACAACGA 60.484 50.000 0.00 0.00 33.96 3.85
2471 5133 1.871039 CCCTGTCCTTGTAACACAACG 59.129 52.381 0.00 0.00 33.96 4.10
2472 5134 2.227194 CCCCTGTCCTTGTAACACAAC 58.773 52.381 0.00 0.00 33.96 3.32
2473 5135 1.847737 ACCCCTGTCCTTGTAACACAA 59.152 47.619 0.00 0.00 36.54 3.33
2474 5136 1.513858 ACCCCTGTCCTTGTAACACA 58.486 50.000 0.00 0.00 0.00 3.72
2475 5137 2.901839 TCTACCCCTGTCCTTGTAACAC 59.098 50.000 0.00 0.00 0.00 3.32
2476 5138 2.901839 GTCTACCCCTGTCCTTGTAACA 59.098 50.000 0.00 0.00 0.00 2.41
2477 5139 2.094338 CGTCTACCCCTGTCCTTGTAAC 60.094 54.545 0.00 0.00 0.00 2.50
2478 5140 2.173519 CGTCTACCCCTGTCCTTGTAA 58.826 52.381 0.00 0.00 0.00 2.41
2479 5141 1.843368 CGTCTACCCCTGTCCTTGTA 58.157 55.000 0.00 0.00 0.00 2.41
2480 5142 1.542187 GCGTCTACCCCTGTCCTTGT 61.542 60.000 0.00 0.00 0.00 3.16
2481 5143 1.218316 GCGTCTACCCCTGTCCTTG 59.782 63.158 0.00 0.00 0.00 3.61
2482 5144 0.617820 ATGCGTCTACCCCTGTCCTT 60.618 55.000 0.00 0.00 0.00 3.36
2483 5145 0.260816 TATGCGTCTACCCCTGTCCT 59.739 55.000 0.00 0.00 0.00 3.85
2484 5146 1.339097 ATATGCGTCTACCCCTGTCC 58.661 55.000 0.00 0.00 0.00 4.02
2485 5147 7.762588 ATATATATATGCGTCTACCCCTGTC 57.237 40.000 4.37 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.