Multiple sequence alignment - TraesCS1B01G448700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G448700 chr1B 100.000 5303 0 0 1 5303 667824125 667818823 0.000000e+00 9793.0
1 TraesCS1B01G448700 chr1B 90.476 42 4 0 312 353 588218160 588218119 7.420000e-04 56.5
2 TraesCS1B01G448700 chr1D 95.694 4436 149 18 1 4420 479596129 479591720 0.000000e+00 7095.0
3 TraesCS1B01G448700 chr1D 93.792 886 54 1 4418 5303 479591650 479590766 0.000000e+00 1330.0
4 TraesCS1B01G448700 chr1D 78.261 115 22 3 300 413 47324271 47324383 2.650000e-08 71.3
5 TraesCS1B01G448700 chr1A 97.500 3720 90 2 655 4373 575871164 575867447 0.000000e+00 6351.0
6 TraesCS1B01G448700 chr1A 92.251 813 59 4 4491 5303 575867393 575866585 0.000000e+00 1149.0
7 TraesCS1B01G448700 chr1A 94.146 632 26 7 1 623 575872369 575871740 0.000000e+00 952.0
8 TraesCS1B01G448700 chr7D 74.128 1921 443 47 2387 4273 18693776 18691876 0.000000e+00 745.0
9 TraesCS1B01G448700 chr7D 94.231 52 2 1 324 375 5355839 5355889 1.580000e-10 78.7
10 TraesCS1B01G448700 chr5B 74.399 1414 325 29 2458 3851 695812853 695811457 5.960000e-159 571.0
11 TraesCS1B01G448700 chrUn 92.409 303 22 1 4945 5246 216510989 216510687 1.060000e-116 431.0
12 TraesCS1B01G448700 chrUn 92.157 306 23 1 4942 5246 286272391 286272696 1.060000e-116 431.0
13 TraesCS1B01G448700 chrUn 91.489 47 4 0 310 356 231612995 231612949 1.230000e-06 65.8
14 TraesCS1B01G448700 chr6D 92.157 306 23 1 4942 5246 389247540 389247845 1.060000e-116 431.0
15 TraesCS1B01G448700 chr6A 92.157 306 23 1 4942 5246 531825993 531826298 1.060000e-116 431.0
16 TraesCS1B01G448700 chr6A 91.489 47 4 0 310 356 3708907 3708861 1.230000e-06 65.8
17 TraesCS1B01G448700 chr5D 92.157 306 23 1 4942 5246 503236151 503236456 1.060000e-116 431.0
18 TraesCS1B01G448700 chr5D 92.157 306 23 1 4942 5246 503240400 503240705 1.060000e-116 431.0
19 TraesCS1B01G448700 chr5D 77.568 584 114 14 3276 3852 555557887 555558460 2.370000e-88 337.0
20 TraesCS1B01G448700 chr3B 92.157 306 23 1 4942 5246 201534645 201534950 1.060000e-116 431.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G448700 chr1B 667818823 667824125 5302 True 9793.000000 9793 100.000000 1 5303 1 chr1B.!!$R2 5302
1 TraesCS1B01G448700 chr1D 479590766 479596129 5363 True 4212.500000 7095 94.743000 1 5303 2 chr1D.!!$R1 5302
2 TraesCS1B01G448700 chr1A 575866585 575872369 5784 True 2817.333333 6351 94.632333 1 5303 3 chr1A.!!$R1 5302
3 TraesCS1B01G448700 chr7D 18691876 18693776 1900 True 745.000000 745 74.128000 2387 4273 1 chr7D.!!$R1 1886
4 TraesCS1B01G448700 chr5B 695811457 695812853 1396 True 571.000000 571 74.399000 2458 3851 1 chr5B.!!$R1 1393
5 TraesCS1B01G448700 chr5D 503236151 503240705 4554 False 431.000000 431 92.157000 4942 5246 2 chr5D.!!$F2 304
6 TraesCS1B01G448700 chr5D 555557887 555558460 573 False 337.000000 337 77.568000 3276 3852 1 chr5D.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
805 1367 0.601558 GCGTGTCACTCAGGTAAGGA 59.398 55.000 0.65 0.0 34.79 3.36 F
1172 1737 0.039618 GACCCCTTTGGCATCCTTGA 59.960 55.000 0.00 0.0 37.83 3.02 F
1296 1861 0.188587 ATGGGCCGATCACTCCTCTA 59.811 55.000 0.00 0.0 0.00 2.43 F
1525 2090 0.403655 TCCAGGGTTGTTGCTGCATA 59.596 50.000 1.84 0.0 0.00 3.14 F
1771 2336 0.966179 ACTACACGTCATGGCACTCA 59.034 50.000 0.00 0.0 0.00 3.41 F
3101 3666 1.079612 GGAATGCTGGGCTTTGTGC 60.080 57.895 0.00 0.0 41.94 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2757 3322 1.733402 TTTGTCTTGGCCCAGCAACG 61.733 55.000 11.49 0.0 0.00 4.10 R
2986 3551 2.415512 GGTTCAACATAGACAAGTCGGC 59.584 50.000 0.00 0.0 34.09 5.54 R
3121 3686 2.760650 GGGAGTTTTTATGGCAAGGAGG 59.239 50.000 0.00 0.0 0.00 4.30 R
3440 4014 2.354259 CCTCAAAGACTCTGATGGCAC 58.646 52.381 0.00 0.0 0.00 5.01 R
3798 4372 3.242837 GCATGCTAGCAACAATCATCGAA 60.243 43.478 23.54 0.0 0.00 3.71 R
4934 5590 0.179067 ACTTTGTCCGCGTTTGAGGA 60.179 50.000 4.92 0.0 42.29 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.040330 TGCGCCAAAGCATGAGTTT 58.960 47.368 4.18 0.00 42.92 2.66
41 42 7.324616 GCATGAGTTTAGCACTAGTTTTTCAAG 59.675 37.037 0.00 0.00 35.01 3.02
50 52 7.927048 AGCACTAGTTTTTCAAGTATCGTTTT 58.073 30.769 0.00 0.00 0.00 2.43
86 88 9.258826 CAAAGGATATTTGTGAGATACTCAGAG 57.741 37.037 1.53 0.00 41.46 3.35
130 134 2.027469 TCTAGGACTTCGGGGCTTTTTC 60.027 50.000 0.00 0.00 0.00 2.29
206 210 7.098845 AGAGAGTTCATTAGGGGGTTTTAAA 57.901 36.000 0.00 0.00 0.00 1.52
258 262 7.563556 TCCTTCAGAAAAAGGTTTGATTTAGGT 59.436 33.333 2.81 0.00 45.16 3.08
401 405 6.099701 AGTGACATGGGTACTAGCATATTTCA 59.900 38.462 0.00 0.00 0.00 2.69
403 407 6.936335 TGACATGGGTACTAGCATATTTCATG 59.064 38.462 0.00 0.00 36.51 3.07
653 1207 2.224426 ACAAACACCTCGCATGAACCTA 60.224 45.455 0.00 0.00 0.00 3.08
727 1281 3.143728 GGGTTTTCCTCTGCGTCTTTTA 58.856 45.455 0.00 0.00 40.46 1.52
728 1282 3.566742 GGGTTTTCCTCTGCGTCTTTTAA 59.433 43.478 0.00 0.00 40.46 1.52
730 1284 5.154222 GGTTTTCCTCTGCGTCTTTTAATG 58.846 41.667 0.00 0.00 36.94 1.90
805 1367 0.601558 GCGTGTCACTCAGGTAAGGA 59.398 55.000 0.65 0.00 34.79 3.36
835 1397 9.240159 GATAGCTCTAGAGTTAAAAGTGCTTAC 57.760 37.037 18.77 0.00 39.84 2.34
893 1455 2.064014 GCTACAGTTGGGTTGACGTAC 58.936 52.381 0.00 0.00 0.00 3.67
1047 1609 6.349300 CATTTCCATGGCTGTACTACTACTT 58.651 40.000 6.96 0.00 0.00 2.24
1096 1661 4.796231 CTCCGAGTCCAACCGCCG 62.796 72.222 0.00 0.00 0.00 6.46
1172 1737 0.039618 GACCCCTTTGGCATCCTTGA 59.960 55.000 0.00 0.00 37.83 3.02
1187 1752 3.909732 TCCTTGACAAAAACTGGACCAT 58.090 40.909 0.00 0.00 0.00 3.55
1296 1861 0.188587 ATGGGCCGATCACTCCTCTA 59.811 55.000 0.00 0.00 0.00 2.43
1525 2090 0.403655 TCCAGGGTTGTTGCTGCATA 59.596 50.000 1.84 0.00 0.00 3.14
1537 2102 3.853831 TGCTGCATATGAACAACCTTG 57.146 42.857 6.97 0.00 0.00 3.61
1771 2336 0.966179 ACTACACGTCATGGCACTCA 59.034 50.000 0.00 0.00 0.00 3.41
1827 2392 2.827322 CAATCAAACATTCAGCCTCCCA 59.173 45.455 0.00 0.00 0.00 4.37
1860 2425 3.904136 ATTTCTCTCGCACAAAACAGG 57.096 42.857 0.00 0.00 0.00 4.00
1977 2542 3.623510 GGCTAGCTAAATTGACACACCTC 59.376 47.826 15.72 0.00 0.00 3.85
2025 2590 2.493278 CCTCATTGGTTCAATCCCACAC 59.507 50.000 0.00 0.00 31.05 3.82
2085 2650 3.384467 TCTCTTTTGGCAACTTGAAAGGG 59.616 43.478 0.00 0.14 35.14 3.95
2115 2680 5.076873 CCACCAGAAATAGGAAAACTCCAA 58.923 41.667 0.00 0.00 0.00 3.53
2328 2893 1.379044 CCTTCCAGACCATGTGGGC 60.379 63.158 3.77 0.00 46.16 5.36
2456 3021 4.642429 GGATACAACCAACTCACTGACTT 58.358 43.478 0.00 0.00 0.00 3.01
2679 3244 5.362105 ACAGGTTAAGTCAAACACTACCA 57.638 39.130 0.00 0.00 36.50 3.25
2820 3385 4.018779 TCCAATTCCTTGAACGGGAGTATT 60.019 41.667 0.00 0.00 46.69 1.89
2986 3551 3.640967 TCCCATGTTCCTTGAAAACCTTG 59.359 43.478 0.00 0.00 0.00 3.61
3101 3666 1.079612 GGAATGCTGGGCTTTGTGC 60.080 57.895 0.00 0.00 41.94 4.57
3121 3686 3.498397 TGCTTCTCAACGTCTTGGATTTC 59.502 43.478 0.00 0.00 0.00 2.17
3138 3703 5.046663 TGGATTTCCTCCTTGCCATAAAAAC 60.047 40.000 0.00 0.00 45.21 2.43
3263 3828 3.423206 CACAAGAATTTCAAAGCTCACGC 59.577 43.478 0.00 0.00 0.00 5.34
3274 3848 1.227263 GCTCACGCCGATGTGGTAT 60.227 57.895 0.00 0.00 40.31 2.73
3440 4014 2.416747 TCTTGACATGAAGCTTGACCG 58.583 47.619 2.10 0.00 0.00 4.79
3798 4372 8.162878 CAAAGATGCTATTAGGTGATGACAAT 57.837 34.615 0.00 0.00 0.00 2.71
3981 4563 7.013369 TCACGTAAGAGTGATGTATTCAGCTAT 59.987 37.037 0.00 0.00 45.18 2.97
4074 4656 2.432628 GAGTGGGTTCGTCAGGCG 60.433 66.667 0.00 0.00 43.01 5.52
4138 4720 4.055654 GCTCATCGCCTTCCATCC 57.944 61.111 0.00 0.00 0.00 3.51
4165 4747 9.415544 GCAACTTGAATGAAGATTTTCTTGTAT 57.584 29.630 0.00 0.00 36.73 2.29
4210 4792 1.202533 GCTCTAGCCATTCGCCTAACA 60.203 52.381 0.00 0.00 38.78 2.41
4301 4883 3.509967 TCAGCGAAAGAGAGTGTGGATTA 59.490 43.478 0.00 0.00 0.00 1.75
4327 4909 5.420725 AATCACCTGCACTTGTGTATCTA 57.579 39.130 2.61 0.00 34.14 1.98
4358 4940 5.901853 TCCTACTCTGAGAACATCCATCAAT 59.098 40.000 12.44 0.00 0.00 2.57
4427 5083 7.286775 ACCTGTCTTGGTTATATGTTGTTGTTT 59.713 33.333 0.00 0.00 36.89 2.83
4497 5153 7.174946 GGGTGCATTAGTTGTTATATGTGCTAT 59.825 37.037 0.00 0.00 32.87 2.97
4526 5182 7.042254 GCTTTTTGCTCCATAATTTGATGATCC 60.042 37.037 0.00 0.00 38.95 3.36
4529 5185 5.698104 TGCTCCATAATTTGATGATCCAGT 58.302 37.500 0.00 0.00 0.00 4.00
4579 5235 4.377839 TGAAAATCCGTTCAAAGCAACA 57.622 36.364 0.00 0.00 34.59 3.33
4582 5238 4.853924 AAATCCGTTCAAAGCAACATCT 57.146 36.364 0.00 0.00 0.00 2.90
4606 5262 7.831193 TCTCTTATTCATCTCCTTCTTTTTGGG 59.169 37.037 0.00 0.00 0.00 4.12
4610 5266 4.082125 TCATCTCCTTCTTTTTGGGCTTC 58.918 43.478 0.00 0.00 0.00 3.86
4632 5288 5.867330 TCCGTTAAAATCTAGGGTTGACAA 58.133 37.500 0.00 0.00 0.00 3.18
4684 5340 9.567776 TCTCTTGTATGAAAAACTTTCATGGTA 57.432 29.630 19.91 7.43 39.30 3.25
4797 5453 1.682740 CACATATGTGGCATGGCTCA 58.317 50.000 25.41 23.85 42.10 4.26
4834 5490 4.263584 TGCATTGGCGTTGCATTG 57.736 50.000 9.75 0.00 44.73 2.82
4840 5496 0.958091 TTGGCGTTGCATTGCTAGTT 59.042 45.000 10.49 0.00 0.00 2.24
4852 5508 2.082354 GCTAGTTCGAGCAGTTGGC 58.918 57.895 1.01 0.00 42.36 4.52
4871 5527 3.073798 TGGCCAGTGGTTTTTCTAGATCA 59.926 43.478 11.74 0.00 0.00 2.92
4918 5574 4.431416 TTGCGGGATATCATTGTAAGGT 57.569 40.909 4.83 0.00 0.00 3.50
4929 5585 5.497464 TCATTGTAAGGTCATCTCCAACA 57.503 39.130 0.00 0.00 0.00 3.33
4934 5590 0.836400 AGGTCATCTCCAACACCGGT 60.836 55.000 0.00 0.00 33.78 5.28
5011 9916 6.887545 ACCATGGACATATAAAAGTTCCGAAA 59.112 34.615 21.47 0.00 0.00 3.46
5078 9985 0.107848 AGCCCCTTACGAAACATCCG 60.108 55.000 0.00 0.00 0.00 4.18
5114 10021 6.769512 ACCATACACTTCACATGTTTCTAGT 58.230 36.000 0.00 0.00 0.00 2.57
5127 10034 2.654749 TTCTAGTGACTCACATGGCG 57.345 50.000 11.80 0.00 36.74 5.69
5169 10076 4.955811 TGGATAAGAATCTACACCGCAT 57.044 40.909 0.00 0.00 32.29 4.73
5199 10106 4.258543 CCCTTGTTGGCGATTCTTTACTA 58.741 43.478 0.00 0.00 0.00 1.82
5205 10112 3.504863 TGGCGATTCTTTACTACGACAC 58.495 45.455 0.00 0.00 37.07 3.67
5229 10136 5.012148 CCATCTAGGGTTCCTCGAATAATGT 59.988 44.000 0.00 0.00 34.61 2.71
5255 10162 4.265056 ACACCGGGCTCGCCTTTT 62.265 61.111 6.32 0.00 36.10 2.27
5257 10164 3.637273 ACCGGGCTCGCCTTTTCT 61.637 61.111 6.32 0.00 36.10 2.52
5270 10177 6.038271 GCTCGCCTTTTCTTTGGATTCTTATA 59.962 38.462 0.00 0.00 0.00 0.98
5271 10178 7.415206 GCTCGCCTTTTCTTTGGATTCTTATAA 60.415 37.037 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.697352 ACTAGTGCTAAACTCATGCTTTGG 59.303 41.667 0.00 0.00 40.56 3.28
24 25 8.597662 AAACGATACTTGAAAAACTAGTGCTA 57.402 30.769 0.00 0.00 36.20 3.49
81 83 5.044919 ACCCACACCATCAATATTTCTCTGA 60.045 40.000 0.00 0.00 0.00 3.27
86 88 4.196193 TCGACCCACACCATCAATATTTC 58.804 43.478 0.00 0.00 0.00 2.17
130 134 1.998315 CTCACACTTGCTCATCCTTCG 59.002 52.381 0.00 0.00 0.00 3.79
206 210 6.430007 AGTAAGAAAGATTCAGCCATTCCAT 58.570 36.000 0.00 0.00 0.00 3.41
727 1281 9.251440 TCCATCTCAAAGAAAAAGATCATCATT 57.749 29.630 0.00 0.00 0.00 2.57
728 1282 8.818622 TCCATCTCAAAGAAAAAGATCATCAT 57.181 30.769 0.00 0.00 0.00 2.45
730 1284 8.278729 ACTCCATCTCAAAGAAAAAGATCATC 57.721 34.615 0.00 0.00 0.00 2.92
805 1367 9.921637 GCACTTTTAACTCTAGAGCTATCATAT 57.078 33.333 19.97 0.00 0.00 1.78
835 1397 1.617755 GCGGTCATCACACGACACAG 61.618 60.000 0.00 0.00 34.97 3.66
976 1538 0.865769 GCTAGTTGTGTGGGTGTTCG 59.134 55.000 0.00 0.00 0.00 3.95
1047 1609 8.637099 CATGAGATGAATGAAAGTAGTAGGAGA 58.363 37.037 0.00 0.00 0.00 3.71
1151 1716 0.712380 AAGGATGCCAAAGGGGTCAT 59.288 50.000 0.00 0.00 39.65 3.06
1172 1737 3.117512 ACTCTCCATGGTCCAGTTTTTGT 60.118 43.478 12.58 0.00 0.00 2.83
1187 1752 2.050144 AGTGGCAGAAAGAACTCTCCA 58.950 47.619 0.00 0.00 0.00 3.86
1249 1814 1.202348 TCTGTATGGCAGTGACAGTCG 59.798 52.381 20.09 0.00 45.23 4.18
1281 1846 1.001406 CCCAATAGAGGAGTGATCGGC 59.999 57.143 0.00 0.00 0.00 5.54
1296 1861 5.313506 AGAAAGGAAAGAGAGGTTACCCAAT 59.686 40.000 0.00 0.00 0.00 3.16
1525 2090 7.637511 AGATAAATCTCCTCAAGGTTGTTCAT 58.362 34.615 0.00 0.00 36.34 2.57
1771 2336 2.093128 CGGTTAGGTTCCTATTGCCAGT 60.093 50.000 0.00 0.00 0.00 4.00
1827 2392 6.308766 GTGCGAGAGAAATAAATTGCAACATT 59.691 34.615 0.00 2.57 33.99 2.71
1860 2425 5.126545 ACCTTTTGGAAACTGACCAGTAAAC 59.873 40.000 2.78 0.00 40.90 2.01
2025 2590 3.257393 ACTGCTGAGATTGCTAAGAACG 58.743 45.455 0.00 0.00 0.00 3.95
2085 2650 9.190317 AGTTTTCCTATTTCTGGTGGAATATTC 57.810 33.333 6.93 6.93 38.24 1.75
2382 2947 4.524316 TGAAATTGTTGATGGAAGCCTG 57.476 40.909 0.00 0.00 0.00 4.85
2456 3021 9.511272 CCATCATAGTGATTGATTCTGGAATTA 57.489 33.333 0.00 0.00 34.28 1.40
2679 3244 4.655963 TCTGAAGTTGGAATAAGCTTGCT 58.344 39.130 9.86 0.00 0.00 3.91
2757 3322 1.733402 TTTGTCTTGGCCCAGCAACG 61.733 55.000 11.49 0.00 0.00 4.10
2820 3385 9.699410 ATATTAAGTTGACCAAATGATTCTGGA 57.301 29.630 11.54 0.00 36.49 3.86
2935 3500 3.244700 CCAGTGAGTTTGTTGGAGGAGAT 60.245 47.826 0.00 0.00 32.34 2.75
2986 3551 2.415512 GGTTCAACATAGACAAGTCGGC 59.584 50.000 0.00 0.00 34.09 5.54
3101 3666 4.319177 AGGAAATCCAAGACGTTGAGAAG 58.681 43.478 1.67 0.00 38.89 2.85
3121 3686 2.760650 GGGAGTTTTTATGGCAAGGAGG 59.239 50.000 0.00 0.00 0.00 4.30
3138 3703 5.646215 AGATGACTACTATAAGGGTGGGAG 58.354 45.833 0.00 0.00 0.00 4.30
3222 3787 8.394971 TCTTGTGCTTCTTTTCAATCATTAGA 57.605 30.769 0.00 0.00 0.00 2.10
3440 4014 2.354259 CCTCAAAGACTCTGATGGCAC 58.646 52.381 0.00 0.00 0.00 5.01
3798 4372 3.242837 GCATGCTAGCAACAATCATCGAA 60.243 43.478 23.54 0.00 0.00 3.71
3981 4563 6.040729 TGAAAACTTCAAGAAGCATGATTCCA 59.959 34.615 19.65 4.19 41.99 3.53
4074 4656 3.642705 GTGGACAAGATTTGCAGGAAAC 58.357 45.455 0.00 0.00 0.00 2.78
4138 4720 6.418819 ACAAGAAAATCTTCATTCAAGTTGCG 59.581 34.615 0.00 0.00 33.78 4.85
4165 4747 4.331968 AGCAAACCCAACTCGAATATCAA 58.668 39.130 0.00 0.00 0.00 2.57
4166 4748 3.938963 GAGCAAACCCAACTCGAATATCA 59.061 43.478 0.00 0.00 0.00 2.15
4210 4792 0.888619 TCGCTCATCGTCAACCTCTT 59.111 50.000 0.00 0.00 39.67 2.85
4301 4883 3.820557 ACACAAGTGCAGGTGATTTACT 58.179 40.909 17.20 0.00 38.38 2.24
4358 4940 6.183360 GGAAGTAAGTGGATTATCTAGTGCCA 60.183 42.308 0.00 0.00 0.00 4.92
4402 4986 6.817765 ACAACAACATATAACCAAGACAGG 57.182 37.500 0.00 0.00 0.00 4.00
4403 4987 9.528018 AAAAACAACAACATATAACCAAGACAG 57.472 29.630 0.00 0.00 0.00 3.51
4427 5083 6.297582 TGGAACCGAGGAACATAGTTTTAAA 58.702 36.000 0.00 0.00 0.00 1.52
4463 5119 3.761752 ACAACTAATGCACCCCATTACAC 59.238 43.478 0.00 0.00 42.24 2.90
4541 5197 7.222611 CGGATTTTCATATCGCCAAGAAAAATT 59.777 33.333 0.00 0.00 41.54 1.82
4542 5198 6.697019 CGGATTTTCATATCGCCAAGAAAAAT 59.303 34.615 0.00 0.00 41.54 1.82
4553 5209 5.568482 TGCTTTGAACGGATTTTCATATCG 58.432 37.500 0.00 0.00 35.42 2.92
4579 5235 9.406113 CCAAAAAGAAGGAGATGAATAAGAGAT 57.594 33.333 0.00 0.00 0.00 2.75
4582 5238 6.378280 GCCCAAAAAGAAGGAGATGAATAAGA 59.622 38.462 0.00 0.00 0.00 2.10
4606 5262 4.939439 TCAACCCTAGATTTTAACGGAAGC 59.061 41.667 0.00 0.00 0.00 3.86
4610 5266 6.753107 ATTGTCAACCCTAGATTTTAACGG 57.247 37.500 0.00 0.00 0.00 4.44
4651 5307 7.516198 AGTTTTTCATACAAGAGACTTGCAT 57.484 32.000 10.78 1.98 0.00 3.96
4684 5340 6.441088 AATCTAGAAGAACAAGGACCAAGT 57.559 37.500 0.00 0.00 0.00 3.16
4732 5388 2.690778 GCAGCCGACGCCTGATTTT 61.691 57.895 10.45 0.00 34.57 1.82
4779 5435 2.107726 AGATGAGCCATGCCACATATGT 59.892 45.455 1.41 1.41 0.00 2.29
4797 5453 2.872245 CACGTGTTGAACCTGTGAAGAT 59.128 45.455 7.58 0.00 32.39 2.40
4834 5490 1.362406 GGCCAACTGCTCGAACTAGC 61.362 60.000 0.00 0.00 43.08 3.42
4840 5496 2.031012 CACTGGCCAACTGCTCGA 59.969 61.111 7.01 0.00 40.92 4.04
4852 5508 6.127897 GGTCAATGATCTAGAAAAACCACTGG 60.128 42.308 0.00 0.00 0.00 4.00
4887 5543 8.474025 ACAATGATATCCCGCAAAAAGAATAAA 58.526 29.630 0.00 0.00 0.00 1.40
4918 5574 0.544357 AGGACCGGTGTTGGAGATGA 60.544 55.000 14.63 0.00 0.00 2.92
4929 5585 4.675029 CCGCGTTTGAGGACCGGT 62.675 66.667 6.92 6.92 37.19 5.28
4934 5590 0.179067 ACTTTGTCCGCGTTTGAGGA 60.179 50.000 4.92 0.00 42.29 3.71
4989 9894 8.746052 TCATTTCGGAACTTTTATATGTCCAT 57.254 30.769 0.00 0.00 0.00 3.41
5011 9916 8.551682 AAGATCCTCTTTCTACAGAGATTCAT 57.448 34.615 0.00 0.00 42.81 2.57
5021 9926 7.279758 CCATGAGACAAAAGATCCTCTTTCTAC 59.720 40.741 0.00 0.00 45.19 2.59
5114 10021 0.607620 TGATGACGCCATGTGAGTCA 59.392 50.000 17.93 17.93 46.99 3.41
5127 10034 7.615582 TCCAAGACTTGTATCATTTGATGAC 57.384 36.000 14.03 0.00 43.01 3.06
5169 10076 1.141254 TCGCCAACAAGGGTGTTCTAA 59.859 47.619 0.00 0.00 45.00 2.10
5199 10106 1.192428 GGAACCCTAGATGGTGTCGT 58.808 55.000 0.00 0.00 39.05 4.34
5205 10112 5.012148 ACATTATTCGAGGAACCCTAGATGG 59.988 44.000 0.00 0.00 35.34 3.51
5229 10136 1.040646 GAGCCCGGTGTGAGATATCA 58.959 55.000 5.32 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.