Multiple sequence alignment - TraesCS1B01G448000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G448000 chr1B 100.000 4534 0 0 1 4534 667486816 667491349 0.000000e+00 8373
1 TraesCS1B01G448000 chr1B 90.533 676 34 17 928 1602 667471840 667472486 0.000000e+00 867
2 TraesCS1B01G448000 chr1B 90.074 544 48 4 998 1541 667444504 667445041 0.000000e+00 701
3 TraesCS1B01G448000 chr1B 78.850 539 101 10 308 843 504918536 504918008 7.220000e-93 351
4 TraesCS1B01G448000 chr1A 90.211 1849 131 24 906 2741 575590348 575592159 0.000000e+00 2366
5 TraesCS1B01G448000 chr1A 94.750 800 36 3 2740 3537 575592318 575593113 0.000000e+00 1240
6 TraesCS1B01G448000 chr1A 79.630 702 123 12 129 827 374139778 374139094 1.900000e-133 486
7 TraesCS1B01G448000 chr1A 80.696 575 95 10 267 840 313202324 313202883 2.510000e-117 433
8 TraesCS1B01G448000 chr1A 89.939 328 27 4 4213 4534 575594484 575594811 7.020000e-113 418
9 TraesCS1B01G448000 chr1D 89.869 1599 108 33 913 2505 479224036 479225586 0.000000e+00 2006
10 TraesCS1B01G448000 chr1D 95.072 974 42 3 2566 3537 479225583 479226552 0.000000e+00 1528
11 TraesCS1B01G448000 chr1D 81.094 841 128 22 23 843 92094540 92095369 1.060000e-180 643
12 TraesCS1B01G448000 chr1D 80.532 827 145 12 28 843 299762576 299761755 4.980000e-174 621
13 TraesCS1B01G448000 chr1D 93.455 275 15 2 4263 4534 479228056 479228330 5.460000e-109 405
14 TraesCS1B01G448000 chr2B 82.479 839 126 11 25 843 654365065 654364228 0.000000e+00 715
15 TraesCS1B01G448000 chr4A 82.297 836 117 19 28 843 121493244 121494068 0.000000e+00 695
16 TraesCS1B01G448000 chr4A 82.979 752 111 10 22 757 109863055 109863805 0.000000e+00 664
17 TraesCS1B01G448000 chr4D 81.851 832 113 25 28 843 344123467 344122658 0.000000e+00 665
18 TraesCS1B01G448000 chr3D 81.398 801 133 10 27 822 41420129 41420918 1.380000e-179 640
19 TraesCS1B01G448000 chr3D 80.499 841 126 24 22 843 92210331 92211152 1.080000e-170 610
20 TraesCS1B01G448000 chr7B 81.550 813 106 22 26 824 715261838 715261056 8.280000e-177 630
21 TraesCS1B01G448000 chr7B 80.912 702 132 2 144 843 120286915 120287616 1.840000e-153 553
22 TraesCS1B01G448000 chr7A 81.196 803 113 24 28 805 531103395 531102606 3.000000e-171 612
23 TraesCS1B01G448000 chr6A 84.539 401 60 2 445 843 23901482 23901082 3.290000e-106 396
24 TraesCS1B01G448000 chr3A 78.547 578 114 6 22 590 71590775 71591351 5.540000e-99 372
25 TraesCS1B01G448000 chr2D 83.846 130 10 9 2080 2199 612737990 612737862 3.710000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G448000 chr1B 667486816 667491349 4533 False 8373.000000 8373 100.000000 1 4534 1 chr1B.!!$F3 4533
1 TraesCS1B01G448000 chr1B 667471840 667472486 646 False 867.000000 867 90.533000 928 1602 1 chr1B.!!$F2 674
2 TraesCS1B01G448000 chr1B 667444504 667445041 537 False 701.000000 701 90.074000 998 1541 1 chr1B.!!$F1 543
3 TraesCS1B01G448000 chr1B 504918008 504918536 528 True 351.000000 351 78.850000 308 843 1 chr1B.!!$R1 535
4 TraesCS1B01G448000 chr1A 575590348 575594811 4463 False 1341.333333 2366 91.633333 906 4534 3 chr1A.!!$F2 3628
5 TraesCS1B01G448000 chr1A 374139094 374139778 684 True 486.000000 486 79.630000 129 827 1 chr1A.!!$R1 698
6 TraesCS1B01G448000 chr1A 313202324 313202883 559 False 433.000000 433 80.696000 267 840 1 chr1A.!!$F1 573
7 TraesCS1B01G448000 chr1D 479224036 479228330 4294 False 1313.000000 2006 92.798667 913 4534 3 chr1D.!!$F2 3621
8 TraesCS1B01G448000 chr1D 92094540 92095369 829 False 643.000000 643 81.094000 23 843 1 chr1D.!!$F1 820
9 TraesCS1B01G448000 chr1D 299761755 299762576 821 True 621.000000 621 80.532000 28 843 1 chr1D.!!$R1 815
10 TraesCS1B01G448000 chr2B 654364228 654365065 837 True 715.000000 715 82.479000 25 843 1 chr2B.!!$R1 818
11 TraesCS1B01G448000 chr4A 121493244 121494068 824 False 695.000000 695 82.297000 28 843 1 chr4A.!!$F2 815
12 TraesCS1B01G448000 chr4A 109863055 109863805 750 False 664.000000 664 82.979000 22 757 1 chr4A.!!$F1 735
13 TraesCS1B01G448000 chr4D 344122658 344123467 809 True 665.000000 665 81.851000 28 843 1 chr4D.!!$R1 815
14 TraesCS1B01G448000 chr3D 41420129 41420918 789 False 640.000000 640 81.398000 27 822 1 chr3D.!!$F1 795
15 TraesCS1B01G448000 chr3D 92210331 92211152 821 False 610.000000 610 80.499000 22 843 1 chr3D.!!$F2 821
16 TraesCS1B01G448000 chr7B 715261056 715261838 782 True 630.000000 630 81.550000 26 824 1 chr7B.!!$R1 798
17 TraesCS1B01G448000 chr7B 120286915 120287616 701 False 553.000000 553 80.912000 144 843 1 chr7B.!!$F1 699
18 TraesCS1B01G448000 chr7A 531102606 531103395 789 True 612.000000 612 81.196000 28 805 1 chr7A.!!$R1 777
19 TraesCS1B01G448000 chr3A 71590775 71591351 576 False 372.000000 372 78.547000 22 590 1 chr3A.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 150 0.250166 AGGAGCCGCACTTAAACGTT 60.250 50.0 0.00 0.00 0.0 3.99 F
296 314 0.392998 GAGAAGGCCTTGGCGATCAA 60.393 55.0 26.25 0.00 0.0 2.57 F
1674 1811 0.168788 TCTAATTGCGTTGCTGCTGC 59.831 50.0 8.89 8.89 40.2 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1792 0.168788 GCAGCAGCAACGCAATTAGA 59.831 50.0 0.00 0.0 41.58 2.10 R
2182 2324 0.108520 CCATTGCCTCCAACACATGC 60.109 55.0 0.00 0.0 32.95 4.06 R
3619 4211 0.249531 TTGTACTGCGAGGCAACGAA 60.250 50.0 8.16 0.0 46.39 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.592400 GACACCACGATGGAGACGGA 61.592 60.000 10.46 0.00 40.96 4.69
127 136 1.452833 GGCTTCACCATGGAGGAGC 60.453 63.158 29.10 29.10 41.22 4.70
141 150 0.250166 AGGAGCCGCACTTAAACGTT 60.250 50.000 0.00 0.00 0.00 3.99
189 199 1.492319 CGCCTTTGTCGACGTTCCAA 61.492 55.000 11.62 0.00 0.00 3.53
193 203 2.198406 CTTTGTCGACGTTCCAACAGA 58.802 47.619 11.62 0.00 0.00 3.41
239 257 3.007920 CCTCCTGGAGCAGCACCT 61.008 66.667 18.51 0.00 34.57 4.00
292 310 4.760047 GCGAGAAGGCCTTGGCGA 62.760 66.667 30.27 0.00 0.00 5.54
296 314 0.392998 GAGAAGGCCTTGGCGATCAA 60.393 55.000 26.25 0.00 0.00 2.57
564 650 2.109181 GGATGAGTAGGCCACGGC 59.891 66.667 5.01 0.00 41.06 5.68
567 653 2.650813 GATGAGTAGGCCACGGCAGG 62.651 65.000 10.83 0.00 44.11 4.85
630 731 0.744874 TTCTACTCTTCATCGCCGGG 59.255 55.000 2.18 0.00 0.00 5.73
650 751 3.350833 GGGACTGCATCTTCACTTCATT 58.649 45.455 0.00 0.00 0.00 2.57
790 902 9.689976 TTTGAAATGTAATGAAATTCATCGTGT 57.310 25.926 9.11 0.00 35.76 4.49
791 903 9.689976 TTGAAATGTAATGAAATTCATCGTGTT 57.310 25.926 9.11 0.97 35.76 3.32
797 909 9.553418 TGTAATGAAATTCATCGTGTTTGTATG 57.447 29.630 9.11 0.00 35.76 2.39
833 949 9.221775 GTGTTTATATGAAATCCGTCATGTTTC 57.778 33.333 0.00 0.00 38.69 2.78
846 962 6.432783 TCCGTCATGTTTCTATGAATTTTGGT 59.567 34.615 0.00 0.00 38.69 3.67
861 977 2.483583 TTGGTCGTGTTTGCATGAAC 57.516 45.000 0.00 0.00 45.95 3.18
862 978 3.071495 GGTCGTGTTTGCATGAACG 57.929 52.632 0.00 8.73 41.74 3.95
864 980 1.658968 GTCGTGTTTGCATGAACGTC 58.341 50.000 13.18 6.34 41.74 4.34
865 981 1.004398 GTCGTGTTTGCATGAACGTCA 60.004 47.619 13.18 0.00 41.74 4.35
866 982 1.870402 TCGTGTTTGCATGAACGTCAT 59.130 42.857 13.18 0.00 37.67 3.06
867 983 2.096466 TCGTGTTTGCATGAACGTCATC 60.096 45.455 13.18 0.00 37.67 2.92
868 984 2.584791 GTGTTTGCATGAACGTCATCC 58.415 47.619 0.00 0.00 34.28 3.51
869 985 1.196581 TGTTTGCATGAACGTCATCCG 59.803 47.619 0.00 0.00 34.28 4.18
870 986 0.801872 TTTGCATGAACGTCATCCGG 59.198 50.000 0.00 0.00 42.24 5.14
871 987 1.643868 TTGCATGAACGTCATCCGGC 61.644 55.000 0.00 0.00 42.24 6.13
872 988 1.815421 GCATGAACGTCATCCGGCT 60.815 57.895 0.00 0.00 42.24 5.52
873 989 1.369091 GCATGAACGTCATCCGGCTT 61.369 55.000 0.00 0.00 42.24 4.35
874 990 1.934589 CATGAACGTCATCCGGCTTA 58.065 50.000 0.00 0.00 42.24 3.09
875 991 2.483876 CATGAACGTCATCCGGCTTAT 58.516 47.619 0.00 0.00 42.24 1.73
876 992 1.934589 TGAACGTCATCCGGCTTATG 58.065 50.000 0.00 0.00 42.24 1.90
877 993 1.478916 TGAACGTCATCCGGCTTATGA 59.521 47.619 0.00 0.00 42.24 2.15
878 994 2.093921 TGAACGTCATCCGGCTTATGAA 60.094 45.455 5.92 0.00 42.24 2.57
879 995 2.684001 ACGTCATCCGGCTTATGAAA 57.316 45.000 5.92 0.00 42.24 2.69
880 996 2.980568 ACGTCATCCGGCTTATGAAAA 58.019 42.857 5.92 0.00 42.24 2.29
881 997 3.340034 ACGTCATCCGGCTTATGAAAAA 58.660 40.909 5.92 0.00 42.24 1.94
899 1015 3.505464 AAAATACTCCGTCTCTGTCCG 57.495 47.619 0.00 0.00 0.00 4.79
900 1016 0.739561 AATACTCCGTCTCTGTCCGC 59.260 55.000 0.00 0.00 0.00 5.54
901 1017 1.437772 ATACTCCGTCTCTGTCCGCG 61.438 60.000 0.00 0.00 0.00 6.46
902 1018 4.180946 CTCCGTCTCTGTCCGCGG 62.181 72.222 22.12 22.12 44.95 6.46
904 1020 4.477975 CCGTCTCTGTCCGCGGAC 62.478 72.222 43.88 43.88 46.33 4.79
981 1099 4.467084 TTCCCGCATCGCCACCTC 62.467 66.667 0.00 0.00 0.00 3.85
1155 1279 2.255172 CGGCCTCGTCGAGCTCTAT 61.255 63.158 17.02 0.00 29.41 1.98
1156 1280 1.284408 GGCCTCGTCGAGCTCTATG 59.716 63.158 17.02 6.64 0.00 2.23
1426 1550 4.361971 TGGTCGAGAGGCTCCGGT 62.362 66.667 20.15 0.24 34.89 5.28
1570 1695 0.693049 TTCCCTCTTGCCTCCTTCAC 59.307 55.000 0.00 0.00 0.00 3.18
1572 1697 1.544825 CCCTCTTGCCTCCTTCACGA 61.545 60.000 0.00 0.00 0.00 4.35
1578 1703 3.502211 TCTTGCCTCCTTCACGAATTTTC 59.498 43.478 0.00 0.00 0.00 2.29
1580 1705 3.074412 TGCCTCCTTCACGAATTTTCTC 58.926 45.455 0.00 0.00 0.00 2.87
1590 1715 3.999663 CACGAATTTTCTCTGCTTCTCCT 59.000 43.478 0.00 0.00 0.00 3.69
1619 1744 2.977405 AGCTTGAATCGCAACTTGAC 57.023 45.000 0.00 0.00 31.96 3.18
1620 1745 2.221169 AGCTTGAATCGCAACTTGACA 58.779 42.857 0.00 0.00 31.96 3.58
1622 1747 2.912967 GCTTGAATCGCAACTTGACATG 59.087 45.455 0.00 0.00 31.96 3.21
1623 1748 3.610114 GCTTGAATCGCAACTTGACATGT 60.610 43.478 0.00 0.00 31.96 3.21
1630 1767 4.930963 TCGCAACTTGACATGTTCAATTT 58.069 34.783 0.00 4.09 43.54 1.82
1642 1779 7.863877 TGACATGTTCAATTTTGACTCTGAATG 59.136 33.333 0.00 0.00 36.83 2.67
1645 1782 8.697067 CATGTTCAATTTTGACTCTGAATGAAC 58.303 33.333 8.03 8.03 36.83 3.18
1646 1783 6.912051 TGTTCAATTTTGACTCTGAATGAACG 59.088 34.615 9.80 0.00 36.83 3.95
1654 1791 3.402110 ACTCTGAATGAACGCATTGTGA 58.598 40.909 3.82 0.00 44.47 3.58
1655 1792 4.005650 ACTCTGAATGAACGCATTGTGAT 58.994 39.130 3.82 0.00 44.47 3.06
1656 1793 4.093998 ACTCTGAATGAACGCATTGTGATC 59.906 41.667 3.82 2.20 44.47 2.92
1659 1796 5.874261 TCTGAATGAACGCATTGTGATCTAA 59.126 36.000 3.82 0.00 44.47 2.10
1660 1797 6.539826 TCTGAATGAACGCATTGTGATCTAAT 59.460 34.615 3.82 0.00 44.47 1.73
1661 1798 7.066163 TCTGAATGAACGCATTGTGATCTAATT 59.934 33.333 3.82 0.00 44.47 1.40
1662 1799 6.968335 TGAATGAACGCATTGTGATCTAATTG 59.032 34.615 3.82 0.00 44.47 2.32
1663 1800 4.661125 TGAACGCATTGTGATCTAATTGC 58.339 39.130 3.82 0.16 0.00 3.56
1664 1801 7.430986 AATGAACGCATTGTGATCTAATTGCG 61.431 38.462 23.50 23.50 42.91 4.85
1665 1802 3.323729 CGCATTGTGATCTAATTGCGT 57.676 42.857 19.95 0.00 39.31 5.24
1666 1803 3.683989 CGCATTGTGATCTAATTGCGTT 58.316 40.909 19.95 0.00 39.31 4.84
1667 1804 3.479590 CGCATTGTGATCTAATTGCGTTG 59.520 43.478 19.95 3.61 39.31 4.10
1668 1805 3.241322 GCATTGTGATCTAATTGCGTTGC 59.759 43.478 0.00 0.00 0.00 4.17
1669 1806 4.665212 CATTGTGATCTAATTGCGTTGCT 58.335 39.130 0.00 0.00 0.00 3.91
1670 1807 3.745332 TGTGATCTAATTGCGTTGCTG 57.255 42.857 0.00 0.00 0.00 4.41
1671 1808 2.159531 TGTGATCTAATTGCGTTGCTGC 60.160 45.455 0.00 0.00 0.00 5.25
1672 1809 2.096496 GTGATCTAATTGCGTTGCTGCT 59.904 45.455 0.00 0.00 35.36 4.24
1673 1810 2.096335 TGATCTAATTGCGTTGCTGCTG 59.904 45.455 0.00 0.00 35.36 4.41
1674 1811 0.168788 TCTAATTGCGTTGCTGCTGC 59.831 50.000 8.89 8.89 40.20 5.25
1898 2035 3.759618 GGATGGACACAATCGGGTAAAAA 59.240 43.478 0.00 0.00 0.00 1.94
1900 2037 5.105513 GGATGGACACAATCGGGTAAAAATT 60.106 40.000 0.00 0.00 0.00 1.82
1902 2039 7.201875 GGATGGACACAATCGGGTAAAAATTAT 60.202 37.037 0.00 0.00 0.00 1.28
1926 2067 6.550843 TGCTAAATGTTTACATTGGTCATCG 58.449 36.000 8.74 0.00 45.06 3.84
1934 2076 2.006888 ACATTGGTCATCGGTTAAGCG 58.993 47.619 20.55 20.55 0.00 4.68
1938 2080 0.529992 GGTCATCGGTTAAGCGGAGG 60.530 60.000 25.22 15.23 0.00 4.30
1953 2095 2.093341 GCGGAGGGGTGTGATTTTACTA 60.093 50.000 0.00 0.00 0.00 1.82
1958 2100 5.130477 GGAGGGGTGTGATTTTACTATCTGA 59.870 44.000 0.00 0.00 0.00 3.27
1961 2103 7.643123 AGGGGTGTGATTTTACTATCTGAATT 58.357 34.615 0.00 0.00 0.00 2.17
1962 2104 8.116026 AGGGGTGTGATTTTACTATCTGAATTT 58.884 33.333 0.00 0.00 0.00 1.82
1963 2105 8.190784 GGGGTGTGATTTTACTATCTGAATTTG 58.809 37.037 0.00 0.00 0.00 2.32
1964 2106 8.956426 GGGTGTGATTTTACTATCTGAATTTGA 58.044 33.333 0.00 0.00 0.00 2.69
1981 2123 9.811995 CTGAATTTGATCCAAACATCATTACAT 57.188 29.630 8.96 0.00 36.13 2.29
2005 2147 8.710551 CATTGTGCATTGCTTAACTGAATTTAA 58.289 29.630 10.49 0.00 0.00 1.52
2008 2150 9.920133 TGTGCATTGCTTAACTGAATTTAATTA 57.080 25.926 10.49 0.00 0.00 1.40
2054 2196 5.593095 ACTTATGTCGAGTAATCCAGCAGTA 59.407 40.000 0.00 0.00 0.00 2.74
2092 2234 0.941542 GTGCCGTGTTTGCTCACTTA 59.058 50.000 5.93 0.00 36.33 2.24
2110 2252 5.753438 TCACTTACATTTATCTGATGACGCC 59.247 40.000 0.00 0.00 0.00 5.68
2129 2271 9.659830 ATGACGCCGATTTTAATTATTTCTTAC 57.340 29.630 0.00 0.00 0.00 2.34
2161 2303 3.022557 ACTTGATGCAGGCCAATATGT 57.977 42.857 5.01 0.00 0.00 2.29
2182 2324 2.775890 AGGACAGTTTCAGATGCAGTG 58.224 47.619 0.00 0.00 0.00 3.66
2194 2336 2.333291 TGCAGTGCATGTGTTGGAG 58.667 52.632 15.37 0.00 31.71 3.86
2203 2345 2.445427 CATGTGTTGGAGGCAATGGTA 58.555 47.619 0.00 0.00 0.00 3.25
2224 2366 1.016130 GCTATGATCCACGGGATGCG 61.016 60.000 9.80 0.00 43.27 4.73
2374 2516 4.141274 TCCATCCAAGAAAAGGTGTTCAGA 60.141 41.667 0.00 0.00 0.00 3.27
2466 2608 2.159920 CGATCATTTAGATGGCGCTTCG 60.160 50.000 7.64 0.00 37.00 3.79
2496 2638 3.575630 TGGATCGACGCTTATGATAAGC 58.424 45.455 23.63 23.63 39.77 3.09
2533 2675 1.533129 GGTGCACCAGAACGTTGTTTC 60.533 52.381 31.23 0.00 35.64 2.78
2538 2680 0.865769 CCAGAACGTTGTTTCGGAGG 59.134 55.000 5.00 0.00 34.94 4.30
2542 2684 0.179067 AACGTTGTTTCGGAGGCTCA 60.179 50.000 17.69 0.00 34.94 4.26
2547 2689 2.004583 TGTTTCGGAGGCTCAATACG 57.995 50.000 17.69 10.62 0.00 3.06
2564 2706 6.450545 TCAATACGCTCTGAATCCTATTCTG 58.549 40.000 1.70 1.53 0.00 3.02
2566 2708 2.432146 ACGCTCTGAATCCTATTCTGCA 59.568 45.455 1.70 0.00 0.00 4.41
2573 2715 3.073503 TGAATCCTATTCTGCATCAGGGG 59.926 47.826 0.00 0.00 31.51 4.79
2588 2732 5.221722 GCATCAGGGGAACATTATACTCTCA 60.222 44.000 0.00 0.00 0.00 3.27
2677 2821 5.735922 GCTTTGTAGTTCTGAAAATGCCACA 60.736 40.000 0.00 0.00 0.00 4.17
2765 3070 6.927936 AGATGACAATATCAACATCGAAGGAG 59.072 38.462 0.00 0.00 41.93 3.69
2837 3144 7.498900 TGCTTTCTGTTGATGTTTCTCTTTCTA 59.501 33.333 0.00 0.00 0.00 2.10
2866 3173 3.764237 TTCGCTGTTCCTAACTCCTTT 57.236 42.857 0.00 0.00 0.00 3.11
2929 3236 4.636206 GGTGGACAATCTTGAGATACCAAC 59.364 45.833 12.58 11.92 35.69 3.77
3102 3409 5.520288 CCTGTCGAGGTAATTACTCAATGTG 59.480 44.000 15.05 2.55 34.66 3.21
3113 3420 7.701539 AATTACTCAATGTGCACCTCATTTA 57.298 32.000 15.69 0.00 33.92 1.40
3115 3422 3.436704 ACTCAATGTGCACCTCATTTACG 59.563 43.478 15.69 1.45 33.92 3.18
3221 3528 3.216800 TCTGCAGTCTGAAGCAACAAAT 58.783 40.909 14.67 0.00 40.73 2.32
3401 3708 1.510492 TCCCAGCTGGATATGCTTCA 58.490 50.000 34.91 2.95 38.61 3.02
3479 3787 8.297470 TGCTTATTGAGATTGCTTATTCCTTT 57.703 30.769 0.00 0.00 0.00 3.11
3537 3845 3.306166 GCAGCATTCTGTCATTTGATTGC 59.694 43.478 0.00 0.00 42.29 3.56
3540 3848 3.306166 GCATTCTGTCATTTGATTGCAGC 59.694 43.478 0.00 0.00 38.59 5.25
3542 3850 5.677852 GCATTCTGTCATTTGATTGCAGCTA 60.678 40.000 0.00 0.00 38.59 3.32
3544 3852 5.494632 TCTGTCATTTGATTGCAGCTATG 57.505 39.130 0.00 0.00 0.00 2.23
3545 3853 4.945543 TCTGTCATTTGATTGCAGCTATGT 59.054 37.500 0.00 0.00 0.00 2.29
3546 3854 5.416639 TCTGTCATTTGATTGCAGCTATGTT 59.583 36.000 0.00 0.00 0.00 2.71
3548 3856 6.094719 TGTCATTTGATTGCAGCTATGTTTC 58.905 36.000 0.00 0.00 0.00 2.78
3549 3857 6.094719 GTCATTTGATTGCAGCTATGTTTCA 58.905 36.000 0.00 0.00 0.00 2.69
3550 3858 6.034256 GTCATTTGATTGCAGCTATGTTTCAC 59.966 38.462 0.00 0.00 0.00 3.18
3551 3859 4.439305 TTGATTGCAGCTATGTTTCACC 57.561 40.909 0.00 0.00 0.00 4.02
3553 3861 3.441222 TGATTGCAGCTATGTTTCACCAG 59.559 43.478 0.00 0.00 0.00 4.00
3554 3862 2.566833 TGCAGCTATGTTTCACCAGT 57.433 45.000 0.00 0.00 0.00 4.00
3557 4145 4.393834 TGCAGCTATGTTTCACCAGTTTA 58.606 39.130 0.00 0.00 0.00 2.01
3559 4147 6.176896 TGCAGCTATGTTTCACCAGTTTATA 58.823 36.000 0.00 0.00 0.00 0.98
3613 4205 7.801716 TTGAGATGTTATACTATTGTTGGCC 57.198 36.000 0.00 0.00 0.00 5.36
3614 4206 7.136822 TGAGATGTTATACTATTGTTGGCCT 57.863 36.000 3.32 0.00 0.00 5.19
3615 4207 7.573710 TGAGATGTTATACTATTGTTGGCCTT 58.426 34.615 3.32 0.00 0.00 4.35
3616 4208 8.052748 TGAGATGTTATACTATTGTTGGCCTTT 58.947 33.333 3.32 0.00 0.00 3.11
3617 4209 8.451908 AGATGTTATACTATTGTTGGCCTTTC 57.548 34.615 3.32 0.00 0.00 2.62
3618 4210 7.502561 AGATGTTATACTATTGTTGGCCTTTCC 59.497 37.037 3.32 0.00 0.00 3.13
3619 4211 6.727394 TGTTATACTATTGTTGGCCTTTCCT 58.273 36.000 3.32 0.00 35.26 3.36
3620 4212 7.179269 TGTTATACTATTGTTGGCCTTTCCTT 58.821 34.615 3.32 0.00 35.26 3.36
3621 4213 7.338449 TGTTATACTATTGTTGGCCTTTCCTTC 59.662 37.037 3.32 0.00 35.26 3.46
3622 4214 3.081804 ACTATTGTTGGCCTTTCCTTCG 58.918 45.455 3.32 0.00 35.26 3.79
3623 4215 1.995376 ATTGTTGGCCTTTCCTTCGT 58.005 45.000 3.32 0.00 35.26 3.85
3626 4218 0.318699 GTTGGCCTTTCCTTCGTTGC 60.319 55.000 3.32 0.00 35.26 4.17
3627 4219 1.460273 TTGGCCTTTCCTTCGTTGCC 61.460 55.000 3.32 0.00 39.33 4.52
3628 4220 1.603739 GGCCTTTCCTTCGTTGCCT 60.604 57.895 0.00 0.00 35.99 4.75
3629 4221 1.587043 GGCCTTTCCTTCGTTGCCTC 61.587 60.000 0.00 0.00 35.99 4.70
3633 4279 1.227999 TTTCCTTCGTTGCCTCGCAG 61.228 55.000 0.00 0.00 40.61 5.18
3635 4281 1.080093 CCTTCGTTGCCTCGCAGTA 60.080 57.895 0.00 0.00 40.61 2.74
3644 4290 1.071605 GCCTCGCAGTACAACTTGAG 58.928 55.000 0.00 0.00 31.42 3.02
3718 4364 4.247258 CATTTCATTTAAGCTGCTGGCAA 58.753 39.130 1.35 0.00 44.79 4.52
3734 4380 4.160642 TGGCAACATCTCTTATCATGCT 57.839 40.909 0.00 0.00 46.17 3.79
3736 4382 4.132336 GGCAACATCTCTTATCATGCTGA 58.868 43.478 0.00 0.00 33.09 4.26
3740 4386 6.511444 GCAACATCTCTTATCATGCTGAGAAC 60.511 42.308 9.55 0.00 38.77 3.01
3743 4389 6.097981 ACATCTCTTATCATGCTGAGAACTCA 59.902 38.462 4.45 4.45 38.77 3.41
3746 4392 6.815641 TCTCTTATCATGCTGAGAACTCAAAC 59.184 38.462 6.01 2.51 39.39 2.93
3747 4393 6.466812 TCTTATCATGCTGAGAACTCAAACA 58.533 36.000 6.01 7.60 39.39 2.83
3748 4394 6.936335 TCTTATCATGCTGAGAACTCAAACAA 59.064 34.615 6.01 0.00 39.39 2.83
3750 4396 4.198530 TCATGCTGAGAACTCAAACAACA 58.801 39.130 6.01 1.17 39.39 3.33
3769 4464 4.104383 ACATGGAGTGATGTGTTTTCCT 57.896 40.909 0.00 0.00 35.17 3.36
3770 4465 5.241403 ACATGGAGTGATGTGTTTTCCTA 57.759 39.130 0.00 0.00 35.17 2.94
3774 4469 6.126863 TGGAGTGATGTGTTTTCCTAAGAT 57.873 37.500 0.00 0.00 0.00 2.40
3787 4498 1.561542 CCTAAGATCCAAGGTGCCTGT 59.438 52.381 3.25 0.00 0.00 4.00
3791 4502 2.269940 AGATCCAAGGTGCCTGTAAGT 58.730 47.619 0.00 0.00 0.00 2.24
3819 4530 0.679002 AGTATGCTGTGCCAAGCTGG 60.679 55.000 8.95 0.00 43.90 4.85
3837 4548 0.324830 GGCAGGAGACTAGGAGTGGT 60.325 60.000 0.00 0.00 40.21 4.16
3842 4553 3.325135 CAGGAGACTAGGAGTGGTTTTGT 59.675 47.826 0.00 0.00 40.21 2.83
3846 4557 5.011840 GGAGACTAGGAGTGGTTTTGTTAGT 59.988 44.000 0.00 0.00 0.00 2.24
3852 4563 3.697542 GGAGTGGTTTTGTTAGTTGGTGT 59.302 43.478 0.00 0.00 0.00 4.16
3854 4565 5.008316 GGAGTGGTTTTGTTAGTTGGTGTAG 59.992 44.000 0.00 0.00 0.00 2.74
3855 4566 4.337274 AGTGGTTTTGTTAGTTGGTGTAGC 59.663 41.667 0.00 0.00 0.00 3.58
3856 4567 4.337274 GTGGTTTTGTTAGTTGGTGTAGCT 59.663 41.667 0.00 0.00 0.00 3.32
3857 4568 4.951094 TGGTTTTGTTAGTTGGTGTAGCTT 59.049 37.500 0.00 0.00 0.00 3.74
3858 4569 5.066764 TGGTTTTGTTAGTTGGTGTAGCTTC 59.933 40.000 0.00 0.00 0.00 3.86
3859 4570 5.506815 GGTTTTGTTAGTTGGTGTAGCTTCC 60.507 44.000 0.00 0.00 0.00 3.46
3860 4571 4.425180 TTGTTAGTTGGTGTAGCTTCCA 57.575 40.909 0.00 0.00 0.00 3.53
3861 4572 4.634012 TGTTAGTTGGTGTAGCTTCCAT 57.366 40.909 0.00 0.00 33.50 3.41
3862 4573 4.323417 TGTTAGTTGGTGTAGCTTCCATG 58.677 43.478 0.00 0.00 33.50 3.66
3863 4574 1.826385 AGTTGGTGTAGCTTCCATGC 58.174 50.000 0.00 0.00 33.50 4.06
3864 4575 0.811281 GTTGGTGTAGCTTCCATGCC 59.189 55.000 0.00 0.00 33.50 4.40
3865 4576 0.403655 TTGGTGTAGCTTCCATGCCA 59.596 50.000 0.00 0.00 33.50 4.92
3866 4577 0.403655 TGGTGTAGCTTCCATGCCAA 59.596 50.000 0.00 0.00 0.00 4.52
3867 4578 1.098050 GGTGTAGCTTCCATGCCAAG 58.902 55.000 0.00 0.00 0.00 3.61
3868 4579 1.614317 GGTGTAGCTTCCATGCCAAGT 60.614 52.381 0.00 0.00 0.00 3.16
3869 4580 1.740025 GTGTAGCTTCCATGCCAAGTC 59.260 52.381 0.00 0.00 0.00 3.01
3870 4581 1.630369 TGTAGCTTCCATGCCAAGTCT 59.370 47.619 0.00 5.28 0.00 3.24
3871 4582 2.040278 TGTAGCTTCCATGCCAAGTCTT 59.960 45.455 0.00 0.00 0.00 3.01
3872 4583 3.263170 TGTAGCTTCCATGCCAAGTCTTA 59.737 43.478 0.00 0.00 0.00 2.10
3873 4584 2.716217 AGCTTCCATGCCAAGTCTTAC 58.284 47.619 4.95 0.00 0.00 2.34
3874 4585 2.040278 AGCTTCCATGCCAAGTCTTACA 59.960 45.455 4.95 0.00 0.00 2.41
3875 4586 2.421424 GCTTCCATGCCAAGTCTTACAG 59.579 50.000 4.95 0.00 0.00 2.74
3876 4587 3.679389 CTTCCATGCCAAGTCTTACAGT 58.321 45.455 0.00 0.00 0.00 3.55
3877 4588 3.057969 TCCATGCCAAGTCTTACAGTG 57.942 47.619 0.00 0.00 0.00 3.66
3878 4589 2.086869 CCATGCCAAGTCTTACAGTGG 58.913 52.381 0.00 0.00 0.00 4.00
3879 4590 2.553028 CCATGCCAAGTCTTACAGTGGT 60.553 50.000 0.00 0.00 33.43 4.16
3880 4591 3.307410 CCATGCCAAGTCTTACAGTGGTA 60.307 47.826 0.00 0.00 33.43 3.25
3881 4592 3.678056 TGCCAAGTCTTACAGTGGTAG 57.322 47.619 0.00 0.00 33.43 3.18
3882 4593 2.289444 TGCCAAGTCTTACAGTGGTAGC 60.289 50.000 0.00 0.00 33.43 3.58
3883 4594 2.935676 GCCAAGTCTTACAGTGGTAGCC 60.936 54.545 0.00 0.00 33.43 3.93
3884 4595 2.567615 CCAAGTCTTACAGTGGTAGCCT 59.432 50.000 0.00 0.00 0.00 4.58
3885 4596 3.368531 CCAAGTCTTACAGTGGTAGCCTC 60.369 52.174 0.00 0.00 0.00 4.70
3886 4597 2.093106 AGTCTTACAGTGGTAGCCTCG 58.907 52.381 0.00 0.00 0.00 4.63
3887 4598 1.134560 GTCTTACAGTGGTAGCCTCGG 59.865 57.143 0.00 0.00 0.00 4.63
3888 4599 0.460311 CTTACAGTGGTAGCCTCGGG 59.540 60.000 0.00 0.00 0.00 5.14
3889 4600 0.040058 TTACAGTGGTAGCCTCGGGA 59.960 55.000 0.00 0.00 0.00 5.14
3890 4601 0.040058 TACAGTGGTAGCCTCGGGAA 59.960 55.000 0.00 0.00 0.00 3.97
3891 4602 1.258445 ACAGTGGTAGCCTCGGGAAG 61.258 60.000 0.00 0.00 0.00 3.46
3892 4603 1.078710 AGTGGTAGCCTCGGGAAGT 59.921 57.895 0.00 0.00 0.00 3.01
3893 4604 0.544595 AGTGGTAGCCTCGGGAAGTT 60.545 55.000 0.00 0.00 0.00 2.66
3894 4605 0.391263 GTGGTAGCCTCGGGAAGTTG 60.391 60.000 0.00 0.00 0.00 3.16
3895 4606 1.221021 GGTAGCCTCGGGAAGTTGG 59.779 63.158 0.00 0.00 0.00 3.77
3896 4607 1.262640 GGTAGCCTCGGGAAGTTGGA 61.263 60.000 0.00 0.00 0.00 3.53
3897 4608 0.175989 GTAGCCTCGGGAAGTTGGAG 59.824 60.000 0.00 0.00 0.00 3.86
3898 4609 0.040646 TAGCCTCGGGAAGTTGGAGA 59.959 55.000 0.00 0.00 0.00 3.71
3899 4610 0.836400 AGCCTCGGGAAGTTGGAGAA 60.836 55.000 0.00 0.00 0.00 2.87
3900 4611 0.253327 GCCTCGGGAAGTTGGAGAAT 59.747 55.000 0.00 0.00 0.00 2.40
3901 4612 1.485066 GCCTCGGGAAGTTGGAGAATA 59.515 52.381 0.00 0.00 0.00 1.75
3902 4613 2.742204 GCCTCGGGAAGTTGGAGAATAC 60.742 54.545 0.00 0.00 0.00 1.89
3903 4614 2.500098 CCTCGGGAAGTTGGAGAATACA 59.500 50.000 0.00 0.00 0.00 2.29
3904 4615 3.134804 CCTCGGGAAGTTGGAGAATACAT 59.865 47.826 0.00 0.00 0.00 2.29
3905 4616 4.384208 CCTCGGGAAGTTGGAGAATACATT 60.384 45.833 0.00 0.00 0.00 2.71
3906 4617 4.513442 TCGGGAAGTTGGAGAATACATTG 58.487 43.478 0.00 0.00 0.00 2.82
3907 4618 4.224147 TCGGGAAGTTGGAGAATACATTGA 59.776 41.667 0.00 0.00 0.00 2.57
3908 4619 5.104527 TCGGGAAGTTGGAGAATACATTGAT 60.105 40.000 0.00 0.00 0.00 2.57
3909 4620 5.237344 CGGGAAGTTGGAGAATACATTGATC 59.763 44.000 0.00 0.00 0.00 2.92
3910 4621 5.237344 GGGAAGTTGGAGAATACATTGATCG 59.763 44.000 0.00 0.00 0.00 3.69
3911 4622 5.237344 GGAAGTTGGAGAATACATTGATCGG 59.763 44.000 0.00 0.00 0.00 4.18
3912 4623 5.614324 AGTTGGAGAATACATTGATCGGA 57.386 39.130 0.00 0.00 0.00 4.55
3913 4624 5.360591 AGTTGGAGAATACATTGATCGGAC 58.639 41.667 0.00 0.00 0.00 4.79
3914 4625 3.977427 TGGAGAATACATTGATCGGACG 58.023 45.455 0.00 0.00 0.00 4.79
3915 4626 3.243737 TGGAGAATACATTGATCGGACGG 60.244 47.826 0.00 0.00 0.00 4.79
3916 4627 3.243771 GGAGAATACATTGATCGGACGGT 60.244 47.826 0.00 0.00 0.00 4.83
3917 4628 4.369182 GAGAATACATTGATCGGACGGTT 58.631 43.478 0.00 0.00 0.00 4.44
3918 4629 5.508489 GGAGAATACATTGATCGGACGGTTA 60.508 44.000 0.00 0.00 0.00 2.85
3919 4630 6.097915 AGAATACATTGATCGGACGGTTAT 57.902 37.500 0.00 0.00 0.00 1.89
3920 4631 7.223260 AGAATACATTGATCGGACGGTTATA 57.777 36.000 0.00 0.00 0.00 0.98
3921 4632 7.837863 AGAATACATTGATCGGACGGTTATAT 58.162 34.615 0.00 0.00 0.00 0.86
3922 4633 7.974501 AGAATACATTGATCGGACGGTTATATC 59.025 37.037 0.00 0.00 0.00 1.63
3927 4638 1.031235 TCGGACGGTTATATCGCCAA 58.969 50.000 0.00 0.00 0.00 4.52
3929 4640 1.792006 GGACGGTTATATCGCCAAGG 58.208 55.000 0.00 0.00 0.00 3.61
3940 4651 1.053424 TCGCCAAGGTAACCTGAAGT 58.947 50.000 0.00 0.00 32.13 3.01
3941 4652 1.418637 TCGCCAAGGTAACCTGAAGTT 59.581 47.619 0.00 0.00 42.83 2.66
3942 4653 1.804748 CGCCAAGGTAACCTGAAGTTC 59.195 52.381 0.00 0.00 40.05 3.01
3943 4654 2.808933 CGCCAAGGTAACCTGAAGTTCA 60.809 50.000 5.25 5.25 40.05 3.18
3945 4656 3.191371 GCCAAGGTAACCTGAAGTTCATG 59.809 47.826 5.91 6.30 40.05 3.07
3946 4657 3.191371 CCAAGGTAACCTGAAGTTCATGC 59.809 47.826 5.91 0.00 40.05 4.06
3956 4678 4.201990 CCTGAAGTTCATGCCTTGAATAGC 60.202 45.833 5.91 0.00 45.77 2.97
3961 4683 3.870538 TCATGCCTTGAATAGCCAGAT 57.129 42.857 0.00 0.00 0.00 2.90
3964 4686 5.693961 TCATGCCTTGAATAGCCAGATTTA 58.306 37.500 0.00 0.00 0.00 1.40
3965 4687 6.128486 TCATGCCTTGAATAGCCAGATTTAA 58.872 36.000 0.00 0.00 0.00 1.52
3966 4688 6.263842 TCATGCCTTGAATAGCCAGATTTAAG 59.736 38.462 0.00 2.75 34.05 1.85
3973 4695 6.594744 TGAATAGCCAGATTTAAGCATGAGA 58.405 36.000 0.00 0.00 0.00 3.27
3974 4696 6.484643 TGAATAGCCAGATTTAAGCATGAGAC 59.515 38.462 0.00 0.00 0.00 3.36
3977 4699 4.880696 AGCCAGATTTAAGCATGAGACTTC 59.119 41.667 0.00 0.00 0.00 3.01
3978 4700 4.260538 GCCAGATTTAAGCATGAGACTTCG 60.261 45.833 0.00 0.00 0.00 3.79
3979 4701 4.272018 CCAGATTTAAGCATGAGACTTCGG 59.728 45.833 0.00 0.00 0.00 4.30
3980 4702 3.873952 AGATTTAAGCATGAGACTTCGGC 59.126 43.478 0.00 0.00 0.00 5.54
3985 4707 1.069823 AGCATGAGACTTCGGCCATAG 59.930 52.381 2.24 0.71 0.00 2.23
3993 4715 4.589908 AGACTTCGGCCATAGAAACAAAT 58.410 39.130 2.24 0.00 0.00 2.32
4029 4752 3.057736 CACCTTCTTCACCATCTTTGCTG 60.058 47.826 0.00 0.00 0.00 4.41
4036 4759 5.819379 TCTTCACCATCTTTGCTGTCATATC 59.181 40.000 0.00 0.00 0.00 1.63
4039 4762 4.753610 CACCATCTTTGCTGTCATATCGAT 59.246 41.667 2.16 2.16 0.00 3.59
4042 4765 5.579904 CCATCTTTGCTGTCATATCGATAGG 59.420 44.000 10.79 10.79 33.60 2.57
4044 4767 6.161855 TCTTTGCTGTCATATCGATAGGTT 57.838 37.500 16.02 0.00 33.60 3.50
4045 4768 6.582636 TCTTTGCTGTCATATCGATAGGTTT 58.417 36.000 16.02 0.00 33.60 3.27
4048 4771 8.725405 TTTGCTGTCATATCGATAGGTTTTTA 57.275 30.769 16.02 0.00 33.60 1.52
4049 4772 8.902540 TTGCTGTCATATCGATAGGTTTTTAT 57.097 30.769 16.02 0.00 33.60 1.40
4050 4773 9.990360 TTGCTGTCATATCGATAGGTTTTTATA 57.010 29.630 16.02 0.00 33.60 0.98
4061 4784 9.938280 TCGATAGGTTTTTATAATGATGGGTAG 57.062 33.333 0.00 0.00 0.00 3.18
4062 4785 9.720769 CGATAGGTTTTTATAATGATGGGTAGT 57.279 33.333 0.00 0.00 0.00 2.73
4064 4787 9.720769 ATAGGTTTTTATAATGATGGGTAGTCG 57.279 33.333 0.00 0.00 0.00 4.18
4066 4789 6.293790 GGTTTTTATAATGATGGGTAGTCGCC 60.294 42.308 0.00 0.00 0.00 5.54
4067 4790 5.554437 TTTATAATGATGGGTAGTCGCCA 57.446 39.130 0.00 0.00 0.00 5.69
4068 4791 5.755409 TTATAATGATGGGTAGTCGCCAT 57.245 39.130 0.00 0.00 0.00 4.40
4069 4792 6.860790 TTATAATGATGGGTAGTCGCCATA 57.139 37.500 0.00 0.00 0.00 2.74
4071 4794 4.640771 AATGATGGGTAGTCGCCATATT 57.359 40.909 0.00 0.00 0.00 1.28
4073 4796 5.755409 ATGATGGGTAGTCGCCATATTTA 57.245 39.130 0.00 0.00 0.00 1.40
4074 4797 5.755409 TGATGGGTAGTCGCCATATTTAT 57.245 39.130 0.00 0.00 0.00 1.40
4077 4800 7.857456 TGATGGGTAGTCGCCATATTTATAAT 58.143 34.615 0.00 0.00 0.00 1.28
4078 4801 8.325787 TGATGGGTAGTCGCCATATTTATAATT 58.674 33.333 0.00 0.00 0.00 1.40
4081 4804 8.158132 TGGGTAGTCGCCATATTTATAATTTCA 58.842 33.333 0.00 0.00 0.00 2.69
4095 4818 8.922931 TTTATAATTTCATATGGCTGCTCTCA 57.077 30.769 2.13 0.00 0.00 3.27
4098 4821 8.734218 ATAATTTCATATGGCTGCTCTCATAG 57.266 34.615 2.13 0.00 30.56 2.23
4100 4823 6.370186 TTTCATATGGCTGCTCTCATAGAT 57.630 37.500 2.13 0.00 30.56 1.98
4101 4824 6.370186 TTCATATGGCTGCTCTCATAGATT 57.630 37.500 2.13 0.00 30.56 2.40
4102 4825 5.731591 TCATATGGCTGCTCTCATAGATTG 58.268 41.667 2.13 0.00 30.56 2.67
4103 4826 5.482878 TCATATGGCTGCTCTCATAGATTGA 59.517 40.000 2.13 0.00 30.56 2.57
4105 4828 4.268797 TGGCTGCTCTCATAGATTGATC 57.731 45.455 0.00 0.00 32.72 2.92
4109 4832 4.448395 GCTGCTCTCATAGATTGATCACAC 59.552 45.833 0.00 0.00 32.72 3.82
4111 4834 6.516360 GCTGCTCTCATAGATTGATCACACTA 60.516 42.308 0.00 2.62 32.72 2.74
4112 4835 7.352079 TGCTCTCATAGATTGATCACACTAA 57.648 36.000 10.70 0.00 32.72 2.24
4113 4836 7.960262 TGCTCTCATAGATTGATCACACTAAT 58.040 34.615 10.70 0.00 32.72 1.73
4115 4838 7.331440 GCTCTCATAGATTGATCACACTAATGG 59.669 40.741 10.70 5.83 32.72 3.16
4116 4839 7.157347 TCTCATAGATTGATCACACTAATGGC 58.843 38.462 10.70 0.00 32.72 4.40
4117 4840 6.233434 TCATAGATTGATCACACTAATGGCC 58.767 40.000 0.00 0.00 0.00 5.36
4118 4841 4.785346 AGATTGATCACACTAATGGCCT 57.215 40.909 3.32 0.00 0.00 5.19
4121 5375 2.368439 TGATCACACTAATGGCCTTGC 58.632 47.619 3.32 0.00 0.00 4.01
4132 5386 0.179032 TGGCCTTGCGTTTCTTCTCA 60.179 50.000 3.32 0.00 0.00 3.27
4133 5387 0.238553 GGCCTTGCGTTTCTTCTCAC 59.761 55.000 0.00 0.00 0.00 3.51
4134 5388 1.230324 GCCTTGCGTTTCTTCTCACT 58.770 50.000 0.00 0.00 0.00 3.41
4141 5395 3.312421 TGCGTTTCTTCTCACTTTTCAGG 59.688 43.478 0.00 0.00 0.00 3.86
4153 5407 6.724441 TCTCACTTTTCAGGTATCTCCTACAA 59.276 38.462 0.00 0.00 46.24 2.41
4154 5408 6.698380 TCACTTTTCAGGTATCTCCTACAAC 58.302 40.000 0.00 0.00 46.24 3.32
4156 5410 7.672660 TCACTTTTCAGGTATCTCCTACAACTA 59.327 37.037 0.00 0.00 46.24 2.24
4159 5413 6.770746 TTCAGGTATCTCCTACAACTACAC 57.229 41.667 0.00 0.00 46.24 2.90
4160 5414 6.075949 TCAGGTATCTCCTACAACTACACT 57.924 41.667 0.00 0.00 46.24 3.55
4161 5415 5.886474 TCAGGTATCTCCTACAACTACACTG 59.114 44.000 0.00 0.00 46.24 3.66
4162 5416 4.645588 AGGTATCTCCTACAACTACACTGC 59.354 45.833 0.00 0.00 46.10 4.40
4164 5418 5.069251 GGTATCTCCTACAACTACACTGCAT 59.931 44.000 0.00 0.00 31.44 3.96
4165 5419 4.720649 TCTCCTACAACTACACTGCATC 57.279 45.455 0.00 0.00 0.00 3.91
4166 5420 4.086457 TCTCCTACAACTACACTGCATCA 58.914 43.478 0.00 0.00 0.00 3.07
4167 5421 4.711846 TCTCCTACAACTACACTGCATCAT 59.288 41.667 0.00 0.00 0.00 2.45
4172 5426 6.918569 CCTACAACTACACTGCATCATACTAC 59.081 42.308 0.00 0.00 0.00 2.73
4173 5427 6.280855 ACAACTACACTGCATCATACTACA 57.719 37.500 0.00 0.00 0.00 2.74
4174 5428 6.697395 ACAACTACACTGCATCATACTACAA 58.303 36.000 0.00 0.00 0.00 2.41
4175 5429 6.590292 ACAACTACACTGCATCATACTACAAC 59.410 38.462 0.00 0.00 0.00 3.32
4177 5431 6.100004 ACTACACTGCATCATACTACAACAC 58.900 40.000 0.00 0.00 0.00 3.32
4178 5432 5.152623 ACACTGCATCATACTACAACACT 57.847 39.130 0.00 0.00 0.00 3.55
4179 5433 4.931601 ACACTGCATCATACTACAACACTG 59.068 41.667 0.00 0.00 0.00 3.66
4180 5434 3.935203 ACTGCATCATACTACAACACTGC 59.065 43.478 0.00 0.00 0.00 4.40
4181 5435 3.934579 CTGCATCATACTACAACACTGCA 59.065 43.478 0.00 0.00 36.94 4.41
4183 5437 4.183865 GCATCATACTACAACACTGCAGA 58.816 43.478 23.35 0.00 0.00 4.26
4184 5438 4.813161 GCATCATACTACAACACTGCAGAT 59.187 41.667 23.35 4.88 0.00 2.90
4185 5439 5.277202 GCATCATACTACAACACTGCAGATG 60.277 44.000 23.35 17.77 34.01 2.90
4186 5440 4.183865 TCATACTACAACACTGCAGATGC 58.816 43.478 23.35 0.00 42.50 3.91
4187 5441 2.847327 ACTACAACACTGCAGATGCT 57.153 45.000 23.35 3.47 42.66 3.79
4188 5442 2.420642 ACTACAACACTGCAGATGCTG 58.579 47.619 23.35 17.51 44.21 4.41
4212 5466 7.728580 GCACGAGCACTATTCTATACTTATC 57.271 40.000 0.00 0.00 41.58 1.75
4213 5467 7.306213 GCACGAGCACTATTCTATACTTATCA 58.694 38.462 0.00 0.00 41.58 2.15
4214 5468 7.808381 GCACGAGCACTATTCTATACTTATCAA 59.192 37.037 0.00 0.00 41.58 2.57
4215 5469 9.678941 CACGAGCACTATTCTATACTTATCAAA 57.321 33.333 0.00 0.00 0.00 2.69
4241 5495 2.804986 TGTGGTACATGCCATGACAT 57.195 45.000 12.53 0.00 44.52 3.06
4256 5510 4.949238 CCATGACATCCACATCCTAACAAA 59.051 41.667 0.00 0.00 0.00 2.83
4265 5519 5.647658 TCCACATCCTAACAAAAGCTGTATG 59.352 40.000 0.00 0.00 37.23 2.39
4269 5523 8.338259 CACATCCTAACAAAAGCTGTATGTATC 58.662 37.037 0.00 0.00 37.23 2.24
4270 5524 7.499232 ACATCCTAACAAAAGCTGTATGTATCC 59.501 37.037 0.00 0.00 37.23 2.59
4271 5525 6.953101 TCCTAACAAAAGCTGTATGTATCCA 58.047 36.000 0.00 0.00 37.23 3.41
4275 5529 4.700213 ACAAAAGCTGTATGTATCCACACC 59.300 41.667 0.00 0.00 37.54 4.16
4276 5530 4.568072 AAAGCTGTATGTATCCACACCA 57.432 40.909 0.00 0.00 37.54 4.17
4278 5532 2.170607 AGCTGTATGTATCCACACCACC 59.829 50.000 0.00 0.00 37.54 4.61
4279 5533 2.745152 GCTGTATGTATCCACACCACCC 60.745 54.545 0.00 0.00 37.54 4.61
4280 5534 2.503765 CTGTATGTATCCACACCACCCA 59.496 50.000 0.00 0.00 37.54 4.51
4281 5535 2.913617 TGTATGTATCCACACCACCCAA 59.086 45.455 0.00 0.00 37.54 4.12
4282 5536 2.806945 ATGTATCCACACCACCCAAG 57.193 50.000 0.00 0.00 37.54 3.61
4283 5537 1.735926 TGTATCCACACCACCCAAGA 58.264 50.000 0.00 0.00 0.00 3.02
4284 5538 1.628340 TGTATCCACACCACCCAAGAG 59.372 52.381 0.00 0.00 0.00 2.85
4285 5539 1.628846 GTATCCACACCACCCAAGAGT 59.371 52.381 0.00 0.00 0.00 3.24
4286 5540 1.149101 ATCCACACCACCCAAGAGTT 58.851 50.000 0.00 0.00 0.00 3.01
4287 5541 0.923358 TCCACACCACCCAAGAGTTT 59.077 50.000 0.00 0.00 0.00 2.66
4288 5542 1.133915 TCCACACCACCCAAGAGTTTC 60.134 52.381 0.00 0.00 0.00 2.78
4290 5544 1.949525 CACACCACCCAAGAGTTTCTG 59.050 52.381 0.00 0.00 0.00 3.02
4298 5557 2.234908 CCCAAGAGTTTCTGGATCGTCT 59.765 50.000 0.00 0.00 0.00 4.18
4300 5559 4.440802 CCCAAGAGTTTCTGGATCGTCTAG 60.441 50.000 0.00 0.00 0.00 2.43
4301 5560 4.399618 CCAAGAGTTTCTGGATCGTCTAGA 59.600 45.833 0.00 0.00 31.87 2.43
4303 5562 4.850680 AGAGTTTCTGGATCGTCTAGAGT 58.149 43.478 0.00 0.00 35.39 3.24
4453 5712 1.616865 TGTGTGGTACTGAGGCACTAC 59.383 52.381 0.00 0.00 41.55 2.73
4472 5731 2.188817 ACCAGGGGTCTCAGTTGTATC 58.811 52.381 0.00 0.00 0.00 2.24
4493 5752 1.320344 CGGTCAGGGTGATCTCCGAA 61.320 60.000 7.70 0.00 40.29 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.309194 GGGAGACACTTGCACTATTGTTATTTT 60.309 37.037 0.00 0.00 0.00 1.82
2 3 5.648092 GGGAGACACTTGCACTATTGTTATT 59.352 40.000 0.00 0.00 0.00 1.40
3 4 5.186198 GGGAGACACTTGCACTATTGTTAT 58.814 41.667 0.00 0.00 0.00 1.89
5 6 3.412386 GGGAGACACTTGCACTATTGTT 58.588 45.455 0.00 0.00 0.00 2.83
6 7 2.612972 CGGGAGACACTTGCACTATTGT 60.613 50.000 0.00 0.00 0.00 2.71
7 8 2.002586 CGGGAGACACTTGCACTATTG 58.997 52.381 0.00 0.00 0.00 1.90
8 9 1.899814 TCGGGAGACACTTGCACTATT 59.100 47.619 0.00 0.00 0.00 1.73
9 10 1.478510 CTCGGGAGACACTTGCACTAT 59.521 52.381 0.00 0.00 33.60 2.12
10 11 0.888619 CTCGGGAGACACTTGCACTA 59.111 55.000 0.00 0.00 33.60 2.74
11 12 1.668294 CTCGGGAGACACTTGCACT 59.332 57.895 0.00 0.00 33.60 4.40
12 13 1.374758 CCTCGGGAGACACTTGCAC 60.375 63.158 0.00 0.00 33.60 4.57
13 14 1.816863 GACCTCGGGAGACACTTGCA 61.817 60.000 0.00 0.00 33.60 4.08
14 15 1.079750 GACCTCGGGAGACACTTGC 60.080 63.158 0.00 0.00 33.60 4.01
15 16 0.528470 GAGACCTCGGGAGACACTTG 59.472 60.000 0.00 0.00 33.60 3.16
16 17 0.612453 GGAGACCTCGGGAGACACTT 60.612 60.000 0.00 0.00 33.60 3.16
17 18 1.000646 GGAGACCTCGGGAGACACT 60.001 63.158 0.00 0.00 33.60 3.55
18 19 2.408241 CGGAGACCTCGGGAGACAC 61.408 68.421 0.00 0.00 33.60 3.67
19 20 2.045242 CGGAGACCTCGGGAGACA 60.045 66.667 0.00 0.00 33.60 3.41
20 21 2.271497 TCGGAGACCTCGGGAGAC 59.729 66.667 0.00 0.00 33.60 3.36
102 103 0.974010 CCATGGTGAAGCCCTTGCAT 60.974 55.000 2.57 0.00 41.13 3.96
127 136 0.239879 ATGGCAACGTTTAAGTGCGG 59.760 50.000 0.00 0.00 42.51 5.69
189 199 0.249911 GTTGTTCCTCCTGCGTCTGT 60.250 55.000 0.00 0.00 0.00 3.41
193 203 1.466025 TACCGTTGTTCCTCCTGCGT 61.466 55.000 0.00 0.00 0.00 5.24
246 264 2.134287 GCCGTAGATCTGGCCCTCA 61.134 63.158 12.15 0.00 45.73 3.86
292 310 0.394352 GGGTTCGTCATGGCCTTGAT 60.394 55.000 22.94 0.00 0.00 2.57
296 314 0.039618 ATTTGGGTTCGTCATGGCCT 59.960 50.000 3.32 0.00 0.00 5.19
415 457 0.504384 CAGCTGACGTTGTTCTCGTG 59.496 55.000 8.42 0.00 41.64 4.35
465 550 3.541831 CGGCGTTGTCGTCATCCG 61.542 66.667 0.00 4.76 42.21 4.18
570 656 4.783621 TGGGACAGCAGGCATCGC 62.784 66.667 0.00 0.10 0.00 4.58
630 731 3.128242 CCAATGAAGTGAAGATGCAGTCC 59.872 47.826 0.00 0.00 0.00 3.85
650 751 2.185867 GCACCGGCGATAAGACCA 59.814 61.111 9.30 0.00 0.00 4.02
718 820 4.586001 GTCCATAAACCTATCCTACGGTGA 59.414 45.833 0.00 0.00 32.86 4.02
765 877 9.689976 AACACGATGAATTTCATTACATTTCAA 57.310 25.926 12.96 0.00 37.20 2.69
767 879 9.941991 CAAACACGATGAATTTCATTACATTTC 57.058 29.630 12.96 0.00 37.20 2.17
768 880 9.474920 ACAAACACGATGAATTTCATTACATTT 57.525 25.926 12.96 9.20 37.20 2.32
771 883 9.553418 CATACAAACACGATGAATTTCATTACA 57.447 29.630 12.96 0.00 37.20 2.41
772 884 9.767684 TCATACAAACACGATGAATTTCATTAC 57.232 29.630 12.96 1.27 37.20 1.89
774 886 9.689976 TTTCATACAAACACGATGAATTTCATT 57.310 25.926 12.96 0.00 37.20 2.57
775 887 9.859427 ATTTCATACAAACACGATGAATTTCAT 57.141 25.926 11.64 11.64 40.34 2.57
776 888 9.340695 GATTTCATACAAACACGATGAATTTCA 57.659 29.630 0.75 0.75 38.88 2.69
777 889 8.798153 GGATTTCATACAAACACGATGAATTTC 58.202 33.333 0.00 0.00 38.88 2.17
778 890 7.484641 CGGATTTCATACAAACACGATGAATTT 59.515 33.333 0.00 0.00 38.88 1.82
779 891 6.966632 CGGATTTCATACAAACACGATGAATT 59.033 34.615 0.00 0.00 38.88 2.17
780 892 6.093495 ACGGATTTCATACAAACACGATGAAT 59.907 34.615 0.00 0.00 38.88 2.57
781 893 5.410132 ACGGATTTCATACAAACACGATGAA 59.590 36.000 0.00 0.00 37.71 2.57
782 894 4.932799 ACGGATTTCATACAAACACGATGA 59.067 37.500 0.00 0.00 0.00 2.92
783 895 5.216566 ACGGATTTCATACAAACACGATG 57.783 39.130 0.00 0.00 0.00 3.84
784 896 5.180492 ACAACGGATTTCATACAAACACGAT 59.820 36.000 0.00 0.00 0.00 3.73
785 897 4.512198 ACAACGGATTTCATACAAACACGA 59.488 37.500 0.00 0.00 0.00 4.35
786 898 4.610951 CACAACGGATTTCATACAAACACG 59.389 41.667 0.00 0.00 0.00 4.49
787 899 5.516090 ACACAACGGATTTCATACAAACAC 58.484 37.500 0.00 0.00 0.00 3.32
788 900 5.759506 ACACAACGGATTTCATACAAACA 57.240 34.783 0.00 0.00 0.00 2.83
789 901 8.736751 ATAAACACAACGGATTTCATACAAAC 57.263 30.769 0.00 0.00 0.00 2.93
791 903 9.995957 CATATAAACACAACGGATTTCATACAA 57.004 29.630 0.00 0.00 0.00 2.41
796 908 9.781834 GATTTCATATAAACACAACGGATTTCA 57.218 29.630 0.00 0.00 0.00 2.69
797 909 9.233232 GGATTTCATATAAACACAACGGATTTC 57.767 33.333 0.00 0.00 0.00 2.17
833 949 5.218885 TGCAAACACGACCAAAATTCATAG 58.781 37.500 0.00 0.00 0.00 2.23
846 962 1.291132 TGACGTTCATGCAAACACGA 58.709 45.000 18.45 0.00 36.48 4.35
887 1003 4.477975 GTCCGCGGACAGAGACGG 62.478 72.222 44.88 9.43 46.97 4.79
888 1004 4.813526 CGTCCGCGGACAGAGACG 62.814 72.222 46.26 33.21 44.77 4.18
889 1005 2.267681 AATCGTCCGCGGACAGAGAC 62.268 60.000 46.26 27.07 44.77 3.36
890 1006 2.044555 AATCGTCCGCGGACAGAGA 61.045 57.895 46.26 37.27 44.77 3.10
891 1007 1.874019 CAATCGTCCGCGGACAGAG 60.874 63.158 46.26 34.11 44.77 3.35
892 1008 2.180769 CAATCGTCCGCGGACAGA 59.819 61.111 46.26 40.88 44.77 3.41
893 1009 3.554692 GCAATCGTCCGCGGACAG 61.555 66.667 46.26 38.13 44.77 3.51
899 1015 4.910585 ATCCCCGCAATCGTCCGC 62.911 66.667 0.00 0.00 0.00 5.54
900 1016 2.661866 GATCCCCGCAATCGTCCG 60.662 66.667 0.00 0.00 0.00 4.79
901 1017 1.595382 CAGATCCCCGCAATCGTCC 60.595 63.158 0.00 0.00 0.00 4.79
902 1018 2.247437 GCAGATCCCCGCAATCGTC 61.247 63.158 0.00 0.00 0.00 4.20
903 1019 2.203070 GCAGATCCCCGCAATCGT 60.203 61.111 0.00 0.00 0.00 3.73
904 1020 3.341043 CGCAGATCCCCGCAATCG 61.341 66.667 0.00 0.00 0.00 3.34
905 1021 1.958205 CTCGCAGATCCCCGCAATC 60.958 63.158 0.00 0.00 33.89 2.67
906 1022 2.109799 CTCGCAGATCCCCGCAAT 59.890 61.111 0.00 0.00 33.89 3.56
907 1023 3.074369 TCTCGCAGATCCCCGCAA 61.074 61.111 0.00 0.00 33.89 4.85
908 1024 3.531207 CTCTCGCAGATCCCCGCA 61.531 66.667 0.00 0.00 33.89 5.69
909 1025 4.292178 CCTCTCGCAGATCCCCGC 62.292 72.222 0.00 0.00 33.89 6.13
910 1026 2.356818 GAACCTCTCGCAGATCCCCG 62.357 65.000 0.00 0.00 33.89 5.73
911 1027 1.443828 GAACCTCTCGCAGATCCCC 59.556 63.158 0.00 0.00 33.89 4.81
981 1099 1.674359 TTGCCAGTGGTGTGTGTAAG 58.326 50.000 11.74 0.00 0.00 2.34
982 1100 1.952990 CATTGCCAGTGGTGTGTGTAA 59.047 47.619 11.74 0.00 0.00 2.41
1570 1695 5.388944 CAAAGGAGAAGCAGAGAAAATTCG 58.611 41.667 0.00 0.00 0.00 3.34
1572 1697 4.831710 AGCAAAGGAGAAGCAGAGAAAATT 59.168 37.500 0.00 0.00 0.00 1.82
1578 1703 1.811359 CCAAGCAAAGGAGAAGCAGAG 59.189 52.381 0.00 0.00 0.00 3.35
1580 1705 1.901591 TCCAAGCAAAGGAGAAGCAG 58.098 50.000 0.00 0.00 0.00 4.24
1604 1729 3.563390 TGAACATGTCAAGTTGCGATTCA 59.437 39.130 0.00 1.51 31.51 2.57
1619 1744 8.697067 GTTCATTCAGAGTCAAAATTGAACATG 58.303 33.333 15.30 0.00 39.21 3.21
1620 1745 7.592533 CGTTCATTCAGAGTCAAAATTGAACAT 59.407 33.333 18.02 0.00 39.21 2.71
1622 1747 6.129352 GCGTTCATTCAGAGTCAAAATTGAAC 60.129 38.462 12.32 12.32 39.21 3.18
1623 1748 5.914635 GCGTTCATTCAGAGTCAAAATTGAA 59.085 36.000 0.00 0.00 39.21 2.69
1630 1767 3.814842 ACAATGCGTTCATTCAGAGTCAA 59.185 39.130 0.00 0.00 40.74 3.18
1642 1779 3.720818 CGCAATTAGATCACAATGCGTTC 59.279 43.478 20.63 0.00 39.31 3.95
1646 1783 3.241322 GCAACGCAATTAGATCACAATGC 59.759 43.478 0.00 0.00 0.00 3.56
1654 1791 1.202222 GCAGCAGCAACGCAATTAGAT 60.202 47.619 0.00 0.00 41.58 1.98
1655 1792 0.168788 GCAGCAGCAACGCAATTAGA 59.831 50.000 0.00 0.00 41.58 2.10
1656 1793 2.645411 GCAGCAGCAACGCAATTAG 58.355 52.632 0.00 0.00 41.58 1.73
1667 1804 0.585357 CATACGGATTCTGCAGCAGC 59.415 55.000 18.43 0.00 42.57 5.25
1668 1805 1.596260 CACATACGGATTCTGCAGCAG 59.404 52.381 17.10 17.10 0.00 4.24
1669 1806 1.655484 CACATACGGATTCTGCAGCA 58.345 50.000 9.47 0.00 0.00 4.41
1670 1807 0.305922 GCACATACGGATTCTGCAGC 59.694 55.000 9.47 0.00 0.00 5.25
1671 1808 0.940126 GGCACATACGGATTCTGCAG 59.060 55.000 7.63 7.63 0.00 4.41
1672 1809 0.809636 CGGCACATACGGATTCTGCA 60.810 55.000 8.91 0.00 0.00 4.41
1673 1810 0.810031 ACGGCACATACGGATTCTGC 60.810 55.000 0.00 0.00 35.23 4.26
1674 1811 1.209128 GACGGCACATACGGATTCTG 58.791 55.000 0.00 0.00 35.23 3.02
1778 1915 2.903855 GGGCACATGATGGAGCCG 60.904 66.667 19.98 0.00 41.60 5.52
1829 1966 2.432628 CTTGTGAGGCCGACCGTC 60.433 66.667 0.00 0.00 42.76 4.79
1900 2037 8.341903 CGATGACCAATGTAAACATTTAGCATA 58.658 33.333 5.60 0.00 43.48 3.14
1902 2039 6.404184 CCGATGACCAATGTAAACATTTAGCA 60.404 38.462 5.60 5.04 43.48 3.49
1919 2060 0.529992 CCTCCGCTTAACCGATGACC 60.530 60.000 0.00 0.00 0.00 4.02
1920 2061 0.529992 CCCTCCGCTTAACCGATGAC 60.530 60.000 0.00 0.00 0.00 3.06
1921 2062 1.682451 CCCCTCCGCTTAACCGATGA 61.682 60.000 0.00 0.00 0.00 2.92
1923 2064 1.688187 ACCCCTCCGCTTAACCGAT 60.688 57.895 0.00 0.00 0.00 4.18
1924 2065 2.284112 ACCCCTCCGCTTAACCGA 60.284 61.111 0.00 0.00 0.00 4.69
1926 2067 1.376812 CACACCCCTCCGCTTAACC 60.377 63.158 0.00 0.00 0.00 2.85
1934 2076 5.130477 TCAGATAGTAAAATCACACCCCTCC 59.870 44.000 0.00 0.00 0.00 4.30
1938 2080 8.956426 TCAAATTCAGATAGTAAAATCACACCC 58.044 33.333 0.00 0.00 0.00 4.61
1958 2100 9.947433 ACAATGTAATGATGTTTGGATCAAATT 57.053 25.926 0.00 0.00 35.97 1.82
1961 2103 6.812656 GCACAATGTAATGATGTTTGGATCAA 59.187 34.615 0.00 0.00 35.97 2.57
1962 2104 6.071503 TGCACAATGTAATGATGTTTGGATCA 60.072 34.615 0.00 0.00 36.78 2.92
1963 2105 6.331845 TGCACAATGTAATGATGTTTGGATC 58.668 36.000 0.00 0.00 0.00 3.36
1964 2106 6.283544 TGCACAATGTAATGATGTTTGGAT 57.716 33.333 0.00 0.00 0.00 3.41
1965 2107 5.718724 TGCACAATGTAATGATGTTTGGA 57.281 34.783 0.00 0.00 0.00 3.53
1966 2108 6.673556 GCAATGCACAATGTAATGATGTTTGG 60.674 38.462 0.00 0.00 0.00 3.28
1967 2109 6.091577 AGCAATGCACAATGTAATGATGTTTG 59.908 34.615 8.35 0.00 0.00 2.93
1968 2110 6.167685 AGCAATGCACAATGTAATGATGTTT 58.832 32.000 8.35 0.00 0.00 2.83
1969 2111 5.726397 AGCAATGCACAATGTAATGATGTT 58.274 33.333 8.35 0.00 0.00 2.71
1970 2112 5.333299 AGCAATGCACAATGTAATGATGT 57.667 34.783 8.35 0.00 0.00 3.06
1973 2115 6.807720 CAGTTAAGCAATGCACAATGTAATGA 59.192 34.615 8.35 0.00 0.00 2.57
1977 2119 5.956068 TCAGTTAAGCAATGCACAATGTA 57.044 34.783 8.35 0.00 0.00 2.29
1981 2123 8.830201 ATTAAATTCAGTTAAGCAATGCACAA 57.170 26.923 8.35 0.00 0.00 3.33
2005 2147 5.127682 GGATGCCACATTTCTGAAAGGTAAT 59.872 40.000 18.60 12.93 33.04 1.89
2008 2150 2.827921 GGATGCCACATTTCTGAAAGGT 59.172 45.455 14.04 14.04 35.51 3.50
2009 2151 2.827322 TGGATGCCACATTTCTGAAAGG 59.173 45.455 12.73 12.73 0.00 3.11
2092 2234 3.452755 TCGGCGTCATCAGATAAATGT 57.547 42.857 6.85 0.00 0.00 2.71
2129 2271 5.220739 GCCTGCATCAAGTAAACTACATCAG 60.221 44.000 0.00 0.00 0.00 2.90
2134 2276 3.343617 TGGCCTGCATCAAGTAAACTAC 58.656 45.455 3.32 0.00 0.00 2.73
2161 2303 3.866066 GCACTGCATCTGAAACTGTCCTA 60.866 47.826 0.00 0.00 0.00 2.94
2182 2324 0.108520 CCATTGCCTCCAACACATGC 60.109 55.000 0.00 0.00 32.95 4.06
2194 2336 2.040278 TGGATCATAGCCTACCATTGCC 59.960 50.000 0.00 0.00 0.00 4.52
2203 2345 0.979665 CATCCCGTGGATCATAGCCT 59.020 55.000 2.76 0.00 40.98 4.58
2353 2495 5.049129 GTCTCTGAACACCTTTTCTTGGATG 60.049 44.000 0.00 0.00 0.00 3.51
2374 2516 6.724905 ACTACCTCATAGTGTTAAAGTGGTCT 59.275 38.462 0.00 0.00 42.90 3.85
2466 2608 0.301987 GCGTCGATCCAGCTTAAAGC 59.698 55.000 0.00 0.00 42.84 3.51
2474 2616 3.610242 GCTTATCATAAGCGTCGATCCAG 59.390 47.826 13.68 0.00 33.20 3.86
2496 2638 3.201290 GCACCACTCATTAGATGTCTGG 58.799 50.000 0.00 5.59 35.44 3.86
2525 2667 1.156736 ATTGAGCCTCCGAAACAACG 58.843 50.000 0.00 0.00 0.00 4.10
2533 2675 0.596083 CAGAGCGTATTGAGCCTCCG 60.596 60.000 0.00 0.00 34.64 4.63
2538 2680 3.104843 AGGATTCAGAGCGTATTGAGC 57.895 47.619 0.00 0.00 0.00 4.26
2542 2684 5.221521 TGCAGAATAGGATTCAGAGCGTATT 60.222 40.000 2.27 0.00 35.61 1.89
2547 2689 4.639334 TGATGCAGAATAGGATTCAGAGC 58.361 43.478 0.00 3.90 0.00 4.09
2564 2706 5.221722 TGAGAGTATAATGTTCCCCTGATGC 60.222 44.000 0.00 0.00 0.00 3.91
2566 2708 7.451731 TTTGAGAGTATAATGTTCCCCTGAT 57.548 36.000 0.00 0.00 0.00 2.90
2654 2798 5.830912 TGTGGCATTTTCAGAACTACAAAG 58.169 37.500 0.00 0.00 0.00 2.77
2677 2821 3.480470 CCACATGTCTTTCTCACAACCT 58.520 45.455 0.00 0.00 0.00 3.50
2705 2849 2.517650 TGAAAAATGGCGTTTGGGAC 57.482 45.000 5.28 0.00 0.00 4.46
2709 2854 5.543251 GCAATTTTGAAAAATGGCGTTTG 57.457 34.783 11.15 1.57 43.23 2.93
2760 3065 5.551977 TCCTTCCTTAATTCAAGTCCTCCTT 59.448 40.000 0.00 0.00 31.77 3.36
2765 3070 7.888250 ATTCATCCTTCCTTAATTCAAGTCC 57.112 36.000 0.00 0.00 31.77 3.85
2837 3144 6.407202 AGTTAGGAACAGCGAATGTATCTTT 58.593 36.000 0.00 0.00 43.00 2.52
2848 3155 4.504858 ACATAAAGGAGTTAGGAACAGCG 58.495 43.478 0.00 0.00 0.00 5.18
2889 3196 1.683365 CCAAGATGGCCCCCAGTTG 60.683 63.158 0.00 0.00 36.75 3.16
2892 3199 2.043652 CACCAAGATGGCCCCCAG 60.044 66.667 0.00 0.00 42.67 4.45
2929 3236 4.287720 CGCATCATTGATGACTTTCATGG 58.712 43.478 26.94 0.54 42.09 3.66
3102 3409 4.638865 AGAATAAACCCGTAAATGAGGTGC 59.361 41.667 0.00 0.00 33.05 5.01
3113 3420 6.999871 TCAAAGTTAAGGAAGAATAAACCCGT 59.000 34.615 0.00 0.00 0.00 5.28
3161 3468 4.380843 TTCAGCCATCCTTTCCTGTAAA 57.619 40.909 0.00 0.00 0.00 2.01
3221 3528 1.001764 CTCAGCAGGACCAATGCCA 60.002 57.895 2.19 0.00 44.97 4.92
3329 3636 3.026879 CTATGAGCAGACGCGCCG 61.027 66.667 5.73 0.00 45.49 6.46
3401 3708 1.298788 CGCAAAAGGAACGCCGTTT 60.299 52.632 3.07 0.00 45.01 3.60
3479 3787 2.143122 CTAACTTTCGTTGCCTGCTCA 58.857 47.619 0.00 0.00 34.59 4.26
3537 3845 8.268850 ACTTATAAACTGGTGAAACATAGCTG 57.731 34.615 0.00 0.00 39.98 4.24
3588 4180 8.052748 AGGCCAACAATAGTATAACATCTCAAA 58.947 33.333 5.01 0.00 0.00 2.69
3591 4183 8.451908 AAAGGCCAACAATAGTATAACATCTC 57.548 34.615 5.01 0.00 0.00 2.75
3592 4184 7.502561 GGAAAGGCCAACAATAGTATAACATCT 59.497 37.037 5.01 0.00 36.34 2.90
3594 4186 7.354312 AGGAAAGGCCAACAATAGTATAACAT 58.646 34.615 5.01 0.00 40.02 2.71
3595 4187 6.727394 AGGAAAGGCCAACAATAGTATAACA 58.273 36.000 5.01 0.00 40.02 2.41
3597 4189 6.540914 CGAAGGAAAGGCCAACAATAGTATAA 59.459 38.462 5.01 0.00 40.02 0.98
3598 4190 6.053005 CGAAGGAAAGGCCAACAATAGTATA 58.947 40.000 5.01 0.00 40.02 1.47
3599 4191 4.881850 CGAAGGAAAGGCCAACAATAGTAT 59.118 41.667 5.01 0.00 40.02 2.12
3600 4192 4.258543 CGAAGGAAAGGCCAACAATAGTA 58.741 43.478 5.01 0.00 40.02 1.82
3602 4194 3.081804 ACGAAGGAAAGGCCAACAATAG 58.918 45.455 5.01 0.00 40.02 1.73
3603 4195 3.149005 ACGAAGGAAAGGCCAACAATA 57.851 42.857 5.01 0.00 40.02 1.90
3606 4198 1.028905 CAACGAAGGAAAGGCCAACA 58.971 50.000 5.01 0.00 40.02 3.33
3607 4199 0.318699 GCAACGAAGGAAAGGCCAAC 60.319 55.000 5.01 0.00 40.02 3.77
3608 4200 1.460273 GGCAACGAAGGAAAGGCCAA 61.460 55.000 5.01 0.00 41.02 4.52
3609 4201 1.901464 GGCAACGAAGGAAAGGCCA 60.901 57.895 5.01 0.00 41.02 5.36
3611 4203 1.876664 GAGGCAACGAAGGAAAGGC 59.123 57.895 0.00 0.00 46.39 4.35
3613 4205 1.227999 TGCGAGGCAACGAAGGAAAG 61.228 55.000 8.16 0.00 46.39 2.62
3614 4206 1.227704 TGCGAGGCAACGAAGGAAA 60.228 52.632 8.16 0.00 46.39 3.13
3615 4207 1.667830 CTGCGAGGCAACGAAGGAA 60.668 57.895 8.16 0.00 46.39 3.36
3616 4208 1.529152 TACTGCGAGGCAACGAAGGA 61.529 55.000 14.59 5.19 42.57 3.36
3617 4209 1.080093 TACTGCGAGGCAACGAAGG 60.080 57.895 14.59 4.32 42.57 3.46
3618 4210 0.666274 TGTACTGCGAGGCAACGAAG 60.666 55.000 9.86 9.86 43.72 3.79
3619 4211 0.249531 TTGTACTGCGAGGCAACGAA 60.250 50.000 8.16 0.00 46.39 3.85
3620 4212 0.942410 GTTGTACTGCGAGGCAACGA 60.942 55.000 8.16 0.00 46.39 3.85
3621 4213 0.944311 AGTTGTACTGCGAGGCAACG 60.944 55.000 0.00 0.08 43.98 4.10
3622 4214 1.069906 CAAGTTGTACTGCGAGGCAAC 60.070 52.381 0.00 12.87 38.41 4.17
3623 4215 1.202592 TCAAGTTGTACTGCGAGGCAA 60.203 47.619 2.11 0.00 38.41 4.52
3626 4218 2.440539 ACTCAAGTTGTACTGCGAGG 57.559 50.000 2.11 0.00 34.58 4.63
3627 4219 3.643763 AGAACTCAAGTTGTACTGCGAG 58.356 45.455 2.11 0.00 38.56 5.03
3628 4220 3.728076 AGAACTCAAGTTGTACTGCGA 57.272 42.857 2.11 0.00 38.56 5.10
3629 4221 4.795970 AAAGAACTCAAGTTGTACTGCG 57.204 40.909 2.11 0.00 38.56 5.18
3668 4314 6.049149 GCAAGTGCAATAGTTGTAGGATAGA 58.951 40.000 0.00 0.00 41.00 1.98
3688 4334 4.328983 CAGCTTAAATGAAATGGCTGCAAG 59.671 41.667 0.50 0.00 40.13 4.01
3701 4347 2.728690 TGTTGCCAGCAGCTTAAATG 57.271 45.000 7.99 0.00 44.23 2.32
3702 4348 3.094572 AGATGTTGCCAGCAGCTTAAAT 58.905 40.909 7.99 0.00 44.23 1.40
3728 4374 5.278120 CATGTTGTTTGAGTTCTCAGCATGA 60.278 40.000 12.83 0.00 45.38 3.07
3733 4379 4.818546 ACTCCATGTTGTTTGAGTTCTCAG 59.181 41.667 2.77 0.00 34.53 3.35
3734 4380 4.576053 CACTCCATGTTGTTTGAGTTCTCA 59.424 41.667 0.00 0.00 35.97 3.27
3736 4382 4.780815 TCACTCCATGTTGTTTGAGTTCT 58.219 39.130 0.00 0.00 35.97 3.01
3740 4386 4.276678 ACACATCACTCCATGTTGTTTGAG 59.723 41.667 0.00 0.00 38.88 3.02
3743 4389 5.596836 AAACACATCACTCCATGTTGTTT 57.403 34.783 0.00 0.00 38.88 2.83
3746 4392 4.279169 AGGAAAACACATCACTCCATGTTG 59.721 41.667 0.00 0.00 34.60 3.33
3747 4393 4.473444 AGGAAAACACATCACTCCATGTT 58.527 39.130 0.00 0.00 34.60 2.71
3748 4394 4.104383 AGGAAAACACATCACTCCATGT 57.896 40.909 0.00 0.00 37.49 3.21
3750 4396 6.126863 TCTTAGGAAAACACATCACTCCAT 57.873 37.500 0.00 0.00 0.00 3.41
3769 4464 3.844211 ACTTACAGGCACCTTGGATCTTA 59.156 43.478 0.00 0.00 0.00 2.10
3770 4465 2.644798 ACTTACAGGCACCTTGGATCTT 59.355 45.455 0.00 0.00 0.00 2.40
3774 4469 2.488347 GGAAACTTACAGGCACCTTGGA 60.488 50.000 0.00 0.00 0.00 3.53
3787 4498 5.642063 GCACAGCATACTTACTGGAAACTTA 59.358 40.000 0.00 0.00 38.25 2.24
3791 4502 3.244735 TGGCACAGCATACTTACTGGAAA 60.245 43.478 0.00 0.00 38.25 3.13
3819 4530 1.562783 AACCACTCCTAGTCTCCTGC 58.437 55.000 0.00 0.00 0.00 4.85
3820 4531 3.325135 ACAAAACCACTCCTAGTCTCCTG 59.675 47.826 0.00 0.00 0.00 3.86
3821 4532 3.588569 ACAAAACCACTCCTAGTCTCCT 58.411 45.455 0.00 0.00 0.00 3.69
3822 4533 4.353383 AACAAAACCACTCCTAGTCTCC 57.647 45.455 0.00 0.00 0.00 3.71
3823 4534 6.099159 ACTAACAAAACCACTCCTAGTCTC 57.901 41.667 0.00 0.00 0.00 3.36
3824 4535 6.289064 CAACTAACAAAACCACTCCTAGTCT 58.711 40.000 0.00 0.00 0.00 3.24
3825 4536 5.469084 CCAACTAACAAAACCACTCCTAGTC 59.531 44.000 0.00 0.00 0.00 2.59
3826 4537 5.104235 ACCAACTAACAAAACCACTCCTAGT 60.104 40.000 0.00 0.00 0.00 2.57
3827 4538 5.238650 CACCAACTAACAAAACCACTCCTAG 59.761 44.000 0.00 0.00 0.00 3.02
3837 4548 5.194432 TGGAAGCTACACCAACTAACAAAA 58.806 37.500 4.99 0.00 32.93 2.44
3842 4553 3.343617 GCATGGAAGCTACACCAACTAA 58.656 45.455 10.46 0.00 39.69 2.24
3846 4557 0.403655 TGGCATGGAAGCTACACCAA 59.596 50.000 10.46 0.00 39.69 3.67
3852 4563 3.263170 TGTAAGACTTGGCATGGAAGCTA 59.737 43.478 5.31 0.00 34.17 3.32
3854 4565 2.421424 CTGTAAGACTTGGCATGGAAGC 59.579 50.000 5.31 0.00 34.07 3.86
3855 4566 3.438087 CACTGTAAGACTTGGCATGGAAG 59.562 47.826 5.31 0.00 37.43 3.46
3856 4567 3.411446 CACTGTAAGACTTGGCATGGAA 58.589 45.455 5.31 0.00 37.43 3.53
3857 4568 2.290260 CCACTGTAAGACTTGGCATGGA 60.290 50.000 5.31 0.00 37.43 3.41
3858 4569 2.086869 CCACTGTAAGACTTGGCATGG 58.913 52.381 5.31 0.00 37.43 3.66
3859 4570 2.783135 ACCACTGTAAGACTTGGCATG 58.217 47.619 0.00 0.00 37.43 4.06
3860 4571 3.619979 GCTACCACTGTAAGACTTGGCAT 60.620 47.826 0.00 0.00 37.43 4.40
3861 4572 2.289444 GCTACCACTGTAAGACTTGGCA 60.289 50.000 0.00 0.00 37.43 4.92
3862 4573 2.347731 GCTACCACTGTAAGACTTGGC 58.652 52.381 0.00 0.00 37.43 4.52
3863 4574 2.567615 AGGCTACCACTGTAAGACTTGG 59.432 50.000 0.00 0.00 37.43 3.61
3864 4575 3.673594 CGAGGCTACCACTGTAAGACTTG 60.674 52.174 0.00 0.00 37.43 3.16
3865 4576 2.492484 CGAGGCTACCACTGTAAGACTT 59.508 50.000 0.00 0.00 37.43 3.01
3866 4577 2.093106 CGAGGCTACCACTGTAAGACT 58.907 52.381 0.00 0.00 37.43 3.24
3867 4578 1.134560 CCGAGGCTACCACTGTAAGAC 59.865 57.143 0.00 0.00 37.43 3.01
3868 4579 1.471119 CCGAGGCTACCACTGTAAGA 58.529 55.000 0.00 0.00 37.43 2.10
3869 4580 0.460311 CCCGAGGCTACCACTGTAAG 59.540 60.000 0.00 0.00 42.29 2.34
3870 4581 0.040058 TCCCGAGGCTACCACTGTAA 59.960 55.000 0.00 0.00 0.00 2.41
3871 4582 0.040058 TTCCCGAGGCTACCACTGTA 59.960 55.000 0.00 0.00 0.00 2.74
3872 4583 1.229082 TTCCCGAGGCTACCACTGT 60.229 57.895 0.00 0.00 0.00 3.55
3873 4584 1.258445 ACTTCCCGAGGCTACCACTG 61.258 60.000 0.00 0.00 0.00 3.66
3874 4585 0.544595 AACTTCCCGAGGCTACCACT 60.545 55.000 0.00 0.00 0.00 4.00
3875 4586 0.391263 CAACTTCCCGAGGCTACCAC 60.391 60.000 0.00 0.00 0.00 4.16
3876 4587 1.550130 CCAACTTCCCGAGGCTACCA 61.550 60.000 0.00 0.00 0.00 3.25
3877 4588 1.221021 CCAACTTCCCGAGGCTACC 59.779 63.158 0.00 0.00 0.00 3.18
3878 4589 0.175989 CTCCAACTTCCCGAGGCTAC 59.824 60.000 0.00 0.00 0.00 3.58
3879 4590 0.040646 TCTCCAACTTCCCGAGGCTA 59.959 55.000 0.00 0.00 0.00 3.93
3880 4591 0.836400 TTCTCCAACTTCCCGAGGCT 60.836 55.000 0.00 0.00 0.00 4.58
3881 4592 0.253327 ATTCTCCAACTTCCCGAGGC 59.747 55.000 0.00 0.00 0.00 4.70
3882 4593 2.500098 TGTATTCTCCAACTTCCCGAGG 59.500 50.000 0.00 0.00 0.00 4.63
3883 4594 3.887621 TGTATTCTCCAACTTCCCGAG 57.112 47.619 0.00 0.00 0.00 4.63
3884 4595 4.224147 TCAATGTATTCTCCAACTTCCCGA 59.776 41.667 0.00 0.00 0.00 5.14
3885 4596 4.513442 TCAATGTATTCTCCAACTTCCCG 58.487 43.478 0.00 0.00 0.00 5.14
3886 4597 5.237344 CGATCAATGTATTCTCCAACTTCCC 59.763 44.000 0.00 0.00 0.00 3.97
3887 4598 5.237344 CCGATCAATGTATTCTCCAACTTCC 59.763 44.000 0.00 0.00 0.00 3.46
3888 4599 6.018669 GTCCGATCAATGTATTCTCCAACTTC 60.019 42.308 0.00 0.00 0.00 3.01
3889 4600 5.817816 GTCCGATCAATGTATTCTCCAACTT 59.182 40.000 0.00 0.00 0.00 2.66
3890 4601 5.360591 GTCCGATCAATGTATTCTCCAACT 58.639 41.667 0.00 0.00 0.00 3.16
3891 4602 4.209288 CGTCCGATCAATGTATTCTCCAAC 59.791 45.833 0.00 0.00 0.00 3.77
3892 4603 4.368315 CGTCCGATCAATGTATTCTCCAA 58.632 43.478 0.00 0.00 0.00 3.53
3893 4604 3.243737 CCGTCCGATCAATGTATTCTCCA 60.244 47.826 0.00 0.00 0.00 3.86
3894 4605 3.243771 ACCGTCCGATCAATGTATTCTCC 60.244 47.826 0.00 0.00 0.00 3.71
3895 4606 3.978687 ACCGTCCGATCAATGTATTCTC 58.021 45.455 0.00 0.00 0.00 2.87
3896 4607 4.402056 AACCGTCCGATCAATGTATTCT 57.598 40.909 0.00 0.00 0.00 2.40
3897 4608 7.044249 CGATATAACCGTCCGATCAATGTATTC 60.044 40.741 0.00 0.00 0.00 1.75
3898 4609 6.750501 CGATATAACCGTCCGATCAATGTATT 59.249 38.462 0.00 0.00 0.00 1.89
3899 4610 6.263344 CGATATAACCGTCCGATCAATGTAT 58.737 40.000 0.00 0.00 0.00 2.29
3900 4611 5.633927 CGATATAACCGTCCGATCAATGTA 58.366 41.667 0.00 0.00 0.00 2.29
3901 4612 4.482386 CGATATAACCGTCCGATCAATGT 58.518 43.478 0.00 0.00 0.00 2.71
3902 4613 3.303495 GCGATATAACCGTCCGATCAATG 59.697 47.826 0.00 0.00 0.00 2.82
3903 4614 3.508762 GCGATATAACCGTCCGATCAAT 58.491 45.455 0.00 0.00 0.00 2.57
3904 4615 2.352030 GGCGATATAACCGTCCGATCAA 60.352 50.000 0.00 0.00 0.00 2.57
3905 4616 1.200716 GGCGATATAACCGTCCGATCA 59.799 52.381 0.00 0.00 0.00 2.92
3906 4617 1.200716 TGGCGATATAACCGTCCGATC 59.799 52.381 0.00 0.00 0.00 3.69
3907 4618 1.250328 TGGCGATATAACCGTCCGAT 58.750 50.000 0.00 0.00 0.00 4.18
3908 4619 1.001048 CTTGGCGATATAACCGTCCGA 60.001 52.381 0.00 2.37 0.00 4.55
3909 4620 1.415374 CTTGGCGATATAACCGTCCG 58.585 55.000 0.00 0.00 0.00 4.79
3910 4621 1.069668 ACCTTGGCGATATAACCGTCC 59.930 52.381 0.00 3.43 0.00 4.79
3911 4622 2.521105 ACCTTGGCGATATAACCGTC 57.479 50.000 0.00 0.00 0.00 4.79
3912 4623 3.493176 GGTTACCTTGGCGATATAACCGT 60.493 47.826 10.13 0.00 36.47 4.83
3913 4624 3.062042 GGTTACCTTGGCGATATAACCG 58.938 50.000 10.13 0.00 36.47 4.44
3914 4625 4.062991 CAGGTTACCTTGGCGATATAACC 58.937 47.826 0.00 15.07 43.40 2.85
3915 4626 4.952460 TCAGGTTACCTTGGCGATATAAC 58.048 43.478 0.00 1.40 0.00 1.89
3916 4627 5.129815 ACTTCAGGTTACCTTGGCGATATAA 59.870 40.000 0.00 0.00 0.00 0.98
3917 4628 4.652421 ACTTCAGGTTACCTTGGCGATATA 59.348 41.667 0.00 0.00 0.00 0.86
3918 4629 3.454812 ACTTCAGGTTACCTTGGCGATAT 59.545 43.478 0.00 0.00 0.00 1.63
3919 4630 2.835764 ACTTCAGGTTACCTTGGCGATA 59.164 45.455 0.00 0.00 0.00 2.92
3920 4631 1.628846 ACTTCAGGTTACCTTGGCGAT 59.371 47.619 0.00 0.00 0.00 4.58
3921 4632 1.053424 ACTTCAGGTTACCTTGGCGA 58.947 50.000 0.00 0.00 0.00 5.54
3922 4633 1.804748 GAACTTCAGGTTACCTTGGCG 59.195 52.381 0.00 0.00 38.41 5.69
3927 4638 2.644798 AGGCATGAACTTCAGGTTACCT 59.355 45.455 0.00 0.00 38.41 3.08
3929 4640 4.072131 TCAAGGCATGAACTTCAGGTTAC 58.928 43.478 0.00 0.00 38.41 2.50
3946 4657 6.263842 TCATGCTTAAATCTGGCTATTCAAGG 59.736 38.462 0.00 0.00 0.00 3.61
3956 4678 4.272018 CCGAAGTCTCATGCTTAAATCTGG 59.728 45.833 0.00 0.00 0.00 3.86
3961 4683 2.290008 TGGCCGAAGTCTCATGCTTAAA 60.290 45.455 0.00 0.00 0.00 1.52
3964 4686 0.254178 ATGGCCGAAGTCTCATGCTT 59.746 50.000 0.00 0.00 0.00 3.91
3965 4687 1.069823 CTATGGCCGAAGTCTCATGCT 59.930 52.381 0.00 0.00 0.00 3.79
3966 4688 1.069204 TCTATGGCCGAAGTCTCATGC 59.931 52.381 0.00 0.00 0.00 4.06
3973 4695 5.885912 ACATATTTGTTTCTATGGCCGAAGT 59.114 36.000 0.00 0.00 29.55 3.01
3974 4696 6.377327 ACATATTTGTTTCTATGGCCGAAG 57.623 37.500 0.00 0.00 29.55 3.79
3977 4699 5.163561 ACCAACATATTTGTTTCTATGGCCG 60.164 40.000 0.00 0.00 43.57 6.13
3978 4700 6.042143 CACCAACATATTTGTTTCTATGGCC 58.958 40.000 0.00 0.00 43.57 5.36
3979 4701 6.042143 CCACCAACATATTTGTTTCTATGGC 58.958 40.000 0.00 0.00 43.57 4.40
3980 4702 6.042143 GCCACCAACATATTTGTTTCTATGG 58.958 40.000 0.00 6.15 43.57 2.74
3985 4707 5.348451 GTGATGCCACCAACATATTTGTTTC 59.652 40.000 0.00 0.00 38.86 2.78
4007 4730 3.152341 AGCAAAGATGGTGAAGAAGGTG 58.848 45.455 0.00 0.00 35.55 4.00
4017 4740 4.406648 TCGATATGACAGCAAAGATGGT 57.593 40.909 0.00 0.00 37.91 3.55
4036 4759 9.720769 ACTACCCATCATTATAAAAACCTATCG 57.279 33.333 0.00 0.00 0.00 2.92
4039 4762 7.658575 GCGACTACCCATCATTATAAAAACCTA 59.341 37.037 0.00 0.00 0.00 3.08
4042 4765 6.261381 TGGCGACTACCCATCATTATAAAAAC 59.739 38.462 0.00 0.00 0.00 2.43
4044 4767 5.931294 TGGCGACTACCCATCATTATAAAA 58.069 37.500 0.00 0.00 0.00 1.52
4045 4768 5.554437 TGGCGACTACCCATCATTATAAA 57.446 39.130 0.00 0.00 0.00 1.40
4048 4771 5.957771 ATATGGCGACTACCCATCATTAT 57.042 39.130 0.00 0.00 41.97 1.28
4049 4772 5.755409 AATATGGCGACTACCCATCATTA 57.245 39.130 0.00 0.00 41.97 1.90
4050 4773 4.640771 AATATGGCGACTACCCATCATT 57.359 40.909 0.00 0.00 41.97 2.57
4052 4775 5.755409 ATAAATATGGCGACTACCCATCA 57.245 39.130 0.00 0.00 41.97 3.07
4054 4777 9.174166 GAAATTATAAATATGGCGACTACCCAT 57.826 33.333 0.00 0.00 44.85 4.00
4055 4778 8.158132 TGAAATTATAAATATGGCGACTACCCA 58.842 33.333 0.00 0.00 36.66 4.51
4056 4779 8.556213 TGAAATTATAAATATGGCGACTACCC 57.444 34.615 0.00 0.00 0.00 3.69
4069 4792 9.524496 TGAGAGCAGCCATATGAAATTATAAAT 57.476 29.630 3.65 0.00 0.00 1.40
4073 4796 8.546322 TCTATGAGAGCAGCCATATGAAATTAT 58.454 33.333 3.65 0.00 0.00 1.28
4074 4797 7.910584 TCTATGAGAGCAGCCATATGAAATTA 58.089 34.615 3.65 0.00 0.00 1.40
4077 4800 5.813513 TCTATGAGAGCAGCCATATGAAA 57.186 39.130 3.65 0.00 0.00 2.69
4078 4801 6.013984 TCAATCTATGAGAGCAGCCATATGAA 60.014 38.462 3.65 0.00 33.04 2.57
4081 4804 6.156429 TGATCAATCTATGAGAGCAGCCATAT 59.844 38.462 0.00 0.00 42.53 1.78
4083 4806 4.286291 TGATCAATCTATGAGAGCAGCCAT 59.714 41.667 0.00 0.00 42.53 4.40
4084 4807 3.644738 TGATCAATCTATGAGAGCAGCCA 59.355 43.478 0.00 0.00 42.53 4.75
4085 4808 3.995705 GTGATCAATCTATGAGAGCAGCC 59.004 47.826 0.00 0.00 42.53 4.85
4086 4809 4.448395 GTGTGATCAATCTATGAGAGCAGC 59.552 45.833 0.00 0.00 42.53 5.25
4088 4811 5.866159 AGTGTGATCAATCTATGAGAGCA 57.134 39.130 0.00 0.00 42.53 4.26
4089 4812 7.331440 CCATTAGTGTGATCAATCTATGAGAGC 59.669 40.741 0.00 0.00 42.53 4.09
4091 4814 7.157347 GCCATTAGTGTGATCAATCTATGAGA 58.843 38.462 0.00 0.00 42.53 3.27
4092 4815 6.370994 GGCCATTAGTGTGATCAATCTATGAG 59.629 42.308 0.00 0.00 42.53 2.90
4093 4816 6.043590 AGGCCATTAGTGTGATCAATCTATGA 59.956 38.462 5.01 0.00 43.67 2.15
4094 4817 6.236409 AGGCCATTAGTGTGATCAATCTATG 58.764 40.000 5.01 0.00 0.00 2.23
4095 4818 6.445451 AGGCCATTAGTGTGATCAATCTAT 57.555 37.500 5.01 0.00 0.00 1.98
4097 4820 4.785346 AGGCCATTAGTGTGATCAATCT 57.215 40.909 5.01 1.32 0.00 2.40
4098 4821 4.498682 GCAAGGCCATTAGTGTGATCAATC 60.499 45.833 5.01 0.00 0.00 2.67
4100 4823 2.754552 GCAAGGCCATTAGTGTGATCAA 59.245 45.455 5.01 0.00 0.00 2.57
4101 4824 2.368439 GCAAGGCCATTAGTGTGATCA 58.632 47.619 5.01 0.00 0.00 2.92
4102 4825 1.331756 CGCAAGGCCATTAGTGTGATC 59.668 52.381 5.01 0.00 0.00 2.92
4103 4826 1.340017 ACGCAAGGCCATTAGTGTGAT 60.340 47.619 5.01 0.00 46.39 3.06
4105 4828 0.881118 AACGCAAGGCCATTAGTGTG 59.119 50.000 5.01 3.93 46.39 3.82
4109 4832 2.749621 AGAAGAAACGCAAGGCCATTAG 59.250 45.455 5.01 0.00 46.39 1.73
4111 4834 1.541588 GAGAAGAAACGCAAGGCCATT 59.458 47.619 5.01 0.00 46.39 3.16
4112 4835 1.168714 GAGAAGAAACGCAAGGCCAT 58.831 50.000 5.01 0.00 46.39 4.40
4113 4836 0.179032 TGAGAAGAAACGCAAGGCCA 60.179 50.000 5.01 0.00 46.39 5.36
4115 4838 1.230324 AGTGAGAAGAAACGCAAGGC 58.770 50.000 0.00 0.00 46.39 4.35
4116 4839 3.971032 AAAGTGAGAAGAAACGCAAGG 57.029 42.857 0.00 0.00 46.39 3.61
4118 4841 4.201910 CCTGAAAAGTGAGAAGAAACGCAA 60.202 41.667 0.00 0.00 0.00 4.85
4121 5375 6.647067 AGATACCTGAAAAGTGAGAAGAAACG 59.353 38.462 0.00 0.00 0.00 3.60
4141 5395 5.578005 TGCAGTGTAGTTGTAGGAGATAC 57.422 43.478 0.00 0.00 34.72 2.24
4153 5407 6.071334 AGTGTTGTAGTATGATGCAGTGTAGT 60.071 38.462 0.00 0.00 0.00 2.73
4154 5408 6.254373 CAGTGTTGTAGTATGATGCAGTGTAG 59.746 42.308 0.00 0.00 0.00 2.74
4156 5410 4.931601 CAGTGTTGTAGTATGATGCAGTGT 59.068 41.667 0.00 0.00 0.00 3.55
4159 5413 3.934579 TGCAGTGTTGTAGTATGATGCAG 59.065 43.478 0.00 0.00 37.50 4.41
4160 5414 3.934579 CTGCAGTGTTGTAGTATGATGCA 59.065 43.478 5.25 0.00 39.89 3.96
4161 5415 4.183865 TCTGCAGTGTTGTAGTATGATGC 58.816 43.478 14.67 0.00 38.12 3.91
4162 5416 5.277202 GCATCTGCAGTGTTGTAGTATGATG 60.277 44.000 14.67 6.49 41.59 3.07
4164 5418 4.081476 AGCATCTGCAGTGTTGTAGTATGA 60.081 41.667 14.67 0.00 45.16 2.15
4165 5419 4.033702 CAGCATCTGCAGTGTTGTAGTATG 59.966 45.833 14.67 7.70 45.16 2.39
4166 5420 4.186926 CAGCATCTGCAGTGTTGTAGTAT 58.813 43.478 14.67 0.00 45.16 2.12
4167 5421 3.588955 CAGCATCTGCAGTGTTGTAGTA 58.411 45.455 14.67 0.00 45.16 1.82
4188 5442 7.306213 TGATAAGTATAGAATAGTGCTCGTGC 58.694 38.462 1.71 1.71 40.20 5.34
4217 5471 4.282957 TGTCATGGCATGTACCACATTTTT 59.717 37.500 25.62 0.00 44.17 1.94
4218 5472 3.831333 TGTCATGGCATGTACCACATTTT 59.169 39.130 25.62 0.00 44.17 1.82
4219 5473 3.429492 TGTCATGGCATGTACCACATTT 58.571 40.909 25.62 0.00 44.17 2.32
4220 5474 3.084536 TGTCATGGCATGTACCACATT 57.915 42.857 25.62 0.00 44.17 2.71
4221 5475 2.804986 TGTCATGGCATGTACCACAT 57.195 45.000 25.62 0.00 44.17 3.21
4222 5476 2.642427 GATGTCATGGCATGTACCACA 58.358 47.619 25.62 21.66 44.17 4.17
4223 5477 1.949525 GGATGTCATGGCATGTACCAC 59.050 52.381 25.62 17.02 44.17 4.16
4224 5478 1.563410 TGGATGTCATGGCATGTACCA 59.437 47.619 25.62 23.62 45.82 3.25
4225 5479 1.949525 GTGGATGTCATGGCATGTACC 59.050 52.381 25.62 21.77 0.00 3.34
4226 5480 2.642427 TGTGGATGTCATGGCATGTAC 58.358 47.619 25.62 20.96 0.00 2.90
4227 5481 3.479489 GATGTGGATGTCATGGCATGTA 58.521 45.455 25.62 16.71 0.00 2.29
4228 5482 2.304092 GATGTGGATGTCATGGCATGT 58.696 47.619 25.62 8.10 0.00 3.21
4229 5483 1.611977 GGATGTGGATGTCATGGCATG 59.388 52.381 19.48 21.42 0.00 4.06
4241 5495 4.098914 ACAGCTTTTGTTAGGATGTGGA 57.901 40.909 0.00 0.00 36.31 4.02
4265 5519 1.628846 ACTCTTGGGTGGTGTGGATAC 59.371 52.381 0.00 0.00 0.00 2.24
4269 5523 1.133792 AGAAACTCTTGGGTGGTGTGG 60.134 52.381 0.00 0.00 0.00 4.17
4270 5524 1.949525 CAGAAACTCTTGGGTGGTGTG 59.050 52.381 0.00 0.00 0.00 3.82
4271 5525 1.133792 CCAGAAACTCTTGGGTGGTGT 60.134 52.381 0.00 0.00 0.00 4.16
4275 5529 2.289694 ACGATCCAGAAACTCTTGGGTG 60.290 50.000 0.00 0.00 0.00 4.61
4276 5530 1.978580 ACGATCCAGAAACTCTTGGGT 59.021 47.619 0.00 0.00 0.00 4.51
4278 5532 3.601443 AGACGATCCAGAAACTCTTGG 57.399 47.619 0.00 0.00 0.00 3.61
4279 5533 5.124776 ACTCTAGACGATCCAGAAACTCTTG 59.875 44.000 0.00 0.00 0.00 3.02
4280 5534 5.124776 CACTCTAGACGATCCAGAAACTCTT 59.875 44.000 0.00 0.00 0.00 2.85
4281 5535 4.638421 CACTCTAGACGATCCAGAAACTCT 59.362 45.833 0.00 0.00 0.00 3.24
4282 5536 4.396790 ACACTCTAGACGATCCAGAAACTC 59.603 45.833 0.00 0.00 0.00 3.01
4283 5537 4.337145 ACACTCTAGACGATCCAGAAACT 58.663 43.478 0.00 0.00 0.00 2.66
4284 5538 4.705337 ACACTCTAGACGATCCAGAAAC 57.295 45.455 0.00 0.00 0.00 2.78
4285 5539 5.243060 TGAAACACTCTAGACGATCCAGAAA 59.757 40.000 0.00 0.00 0.00 2.52
4286 5540 4.765339 TGAAACACTCTAGACGATCCAGAA 59.235 41.667 0.00 0.00 0.00 3.02
4287 5541 4.332828 TGAAACACTCTAGACGATCCAGA 58.667 43.478 0.00 0.00 0.00 3.86
4288 5542 4.667262 CTGAAACACTCTAGACGATCCAG 58.333 47.826 0.00 0.00 0.00 3.86
4290 5544 3.119459 TGCTGAAACACTCTAGACGATCC 60.119 47.826 0.00 0.00 0.00 3.36
4453 5712 1.486726 GGATACAACTGAGACCCCTGG 59.513 57.143 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.