Multiple sequence alignment - TraesCS1B01G447600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G447600 chr1B 100.000 6776 0 0 1 6776 667223751 667230526 0.000000e+00 12514.0
1 TraesCS1B01G447600 chr1B 93.785 354 21 1 2977 3329 121768910 121769263 1.290000e-146 531.0
2 TraesCS1B01G447600 chr1B 91.286 241 15 4 1991 2227 121768243 121768481 2.360000e-84 324.0
3 TraesCS1B01G447600 chr1B 95.370 108 5 0 4631 4738 106905208 106905101 9.030000e-39 172.0
4 TraesCS1B01G447600 chr1B 94.444 54 3 0 6723 6776 388762317 388762370 4.350000e-12 84.2
5 TraesCS1B01G447600 chr1A 96.411 4542 127 24 107 4632 575362491 575367012 0.000000e+00 7452.0
6 TraesCS1B01G447600 chr1A 91.358 1863 122 24 4736 6588 575367010 575368843 0.000000e+00 2512.0
7 TraesCS1B01G447600 chr1A 96.364 110 3 1 6626 6735 575369002 575369110 5.400000e-41 180.0
8 TraesCS1B01G447600 chr1A 96.296 54 2 0 6723 6776 357769289 357769342 9.360000e-14 89.8
9 TraesCS1B01G447600 chr1A 85.542 83 4 2 1 83 575362412 575362486 5.630000e-11 80.5
10 TraesCS1B01G447600 chr1D 95.415 4537 133 38 147 4632 479048971 479053483 0.000000e+00 7156.0
11 TraesCS1B01G447600 chr1D 91.395 1197 70 13 4736 5927 479053481 479054649 0.000000e+00 1609.0
12 TraesCS1B01G447600 chr1D 93.990 599 18 9 5995 6588 479054649 479055234 0.000000e+00 891.0
13 TraesCS1B01G447600 chr1D 94.709 189 10 0 6588 6776 479055360 479055548 1.850000e-75 294.0
14 TraesCS1B01G447600 chr1D 85.542 83 4 2 1 83 479048866 479048940 5.630000e-11 80.5
15 TraesCS1B01G447600 chr3B 89.126 515 50 5 645 1158 34547527 34547018 2.670000e-178 636.0
16 TraesCS1B01G447600 chr3B 88.889 513 49 7 642 1152 35541541 35542047 5.770000e-175 625.0
17 TraesCS1B01G447600 chr3B 88.544 515 53 4 642 1155 35725582 35726091 2.680000e-173 619.0
18 TraesCS1B01G447600 chr3B 88.350 515 54 5 642 1155 35513552 35514061 1.250000e-171 614.0
19 TraesCS1B01G447600 chr3B 88.350 515 54 4 642 1155 35797272 35797781 1.250000e-171 614.0
20 TraesCS1B01G447600 chr3B 90.594 202 18 1 1832 2032 35514082 35514283 4.030000e-67 267.0
21 TraesCS1B01G447600 chr3B 90.547 201 18 1 1833 2032 34492878 34492678 1.450000e-66 265.0
22 TraesCS1B01G447600 chr3B 94.118 51 2 1 6720 6770 94499315 94499364 7.290000e-10 76.8
23 TraesCS1B01G447600 chrUn 88.544 515 53 5 645 1158 286898238 286897729 2.680000e-173 619.0
24 TraesCS1B01G447600 chrUn 88.544 515 53 5 642 1155 378043938 378044447 2.680000e-173 619.0
25 TraesCS1B01G447600 chr4B 94.633 354 18 1 2977 3329 409740397 409740750 1.280000e-151 547.0
26 TraesCS1B01G447600 chr4B 94.215 242 12 2 1991 2230 409740103 409740344 1.070000e-97 368.0
27 TraesCS1B01G447600 chr4B 97.222 108 3 0 4631 4738 278513804 278513697 4.170000e-42 183.0
28 TraesCS1B01G447600 chr4B 94.118 51 3 0 6726 6776 146469366 146469316 2.030000e-10 78.7
29 TraesCS1B01G447600 chr2D 88.811 286 26 4 1834 2117 29450266 29449985 5.030000e-91 346.0
30 TraesCS1B01G447600 chr2D 87.413 286 31 4 1832 2114 613466868 613467151 2.360000e-84 324.0
31 TraesCS1B01G447600 chr5D 88.462 286 28 5 1832 2114 52597510 52597793 2.340000e-89 340.0
32 TraesCS1B01G447600 chr6D 87.762 286 30 4 1835 2117 54632 54349 5.070000e-86 329.0
33 TraesCS1B01G447600 chr7D 87.279 283 32 3 1832 2112 41331126 41331406 3.050000e-83 320.0
34 TraesCS1B01G447600 chr7B 96.296 108 4 0 4631 4738 634288930 634288823 1.940000e-40 178.0
35 TraesCS1B01G447600 chr7B 96.296 108 4 0 4631 4738 727599772 727599879 1.940000e-40 178.0
36 TraesCS1B01G447600 chr5A 96.296 108 4 0 4631 4738 547813305 547813198 1.940000e-40 178.0
37 TraesCS1B01G447600 chr5A 88.235 85 6 4 4899 4982 33780389 33780470 1.560000e-16 99.0
38 TraesCS1B01G447600 chr5A 100.000 50 0 0 6727 6776 239530063 239530014 7.240000e-15 93.5
39 TraesCS1B01G447600 chr4A 96.296 108 4 0 4631 4738 274596181 274596288 1.940000e-40 178.0
40 TraesCS1B01G447600 chr4A 93.548 62 3 1 6715 6776 514080004 514080064 2.600000e-14 91.6
41 TraesCS1B01G447600 chr2A 96.296 108 4 0 4631 4738 316164200 316164307 1.940000e-40 178.0
42 TraesCS1B01G447600 chr2A 92.453 53 4 0 6724 6776 15900399 15900347 7.290000e-10 76.8
43 TraesCS1B01G447600 chr6B 90.083 121 11 1 4630 4750 506127982 506128101 9.100000e-34 156.0
44 TraesCS1B01G447600 chr3A 90.678 118 9 2 4631 4747 362337545 362337429 9.100000e-34 156.0
45 TraesCS1B01G447600 chr2B 90.909 55 4 1 6721 6774 730612357 730612411 9.430000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G447600 chr1B 667223751 667230526 6775 False 12514.000 12514 100.00000 1 6776 1 chr1B.!!$F2 6775
1 TraesCS1B01G447600 chr1B 121768243 121769263 1020 False 427.500 531 92.53550 1991 3329 2 chr1B.!!$F3 1338
2 TraesCS1B01G447600 chr1A 575362412 575369110 6698 False 2556.125 7452 92.41875 1 6735 4 chr1A.!!$F2 6734
3 TraesCS1B01G447600 chr1D 479048866 479055548 6682 False 2006.100 7156 92.21020 1 6776 5 chr1D.!!$F1 6775
4 TraesCS1B01G447600 chr3B 34547018 34547527 509 True 636.000 636 89.12600 645 1158 1 chr3B.!!$R2 513
5 TraesCS1B01G447600 chr3B 35541541 35542047 506 False 625.000 625 88.88900 642 1152 1 chr3B.!!$F1 510
6 TraesCS1B01G447600 chr3B 35725582 35726091 509 False 619.000 619 88.54400 642 1155 1 chr3B.!!$F2 513
7 TraesCS1B01G447600 chr3B 35797272 35797781 509 False 614.000 614 88.35000 642 1155 1 chr3B.!!$F3 513
8 TraesCS1B01G447600 chr3B 35513552 35514283 731 False 440.500 614 89.47200 642 2032 2 chr3B.!!$F5 1390
9 TraesCS1B01G447600 chrUn 286897729 286898238 509 True 619.000 619 88.54400 645 1158 1 chrUn.!!$R1 513
10 TraesCS1B01G447600 chrUn 378043938 378044447 509 False 619.000 619 88.54400 642 1155 1 chrUn.!!$F1 513
11 TraesCS1B01G447600 chr4B 409740103 409740750 647 False 457.500 547 94.42400 1991 3329 2 chr4B.!!$F1 1338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.034477 ATGTTTTAGGCTCACCCCGG 60.034 55.000 0.00 0.00 36.11 5.73 F
570 584 0.038166 TTTGACCCCACTGCTCCATC 59.962 55.000 0.00 0.00 0.00 3.51 F
593 607 0.107752 TTGCCGCTAGATGTGCATGA 60.108 50.000 0.00 0.00 33.08 3.07 F
1692 1725 0.463295 ATCTTGGCATGCCTCGTCAG 60.463 55.000 35.53 22.07 36.94 3.51 F
1918 1951 1.219773 ATCATGAGGACCACTGCCAT 58.780 50.000 0.09 0.00 0.00 4.40 F
2513 2935 1.561542 CCAAATGCTCCAGGACTAGGT 59.438 52.381 0.00 0.00 0.00 3.08 F
3467 3893 1.732941 TGCCTGCCAACAGTATTACG 58.267 50.000 0.00 0.00 42.81 3.18 F
4636 5062 0.179054 GGCGAATCCTTGGTACTCCC 60.179 60.000 0.00 0.00 0.00 4.30 F
4844 5270 0.261696 ACCTGCCCACCAAGTTTTCT 59.738 50.000 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 1978 2.037772 ACAGCACTTAGAGGACACCTTG 59.962 50.000 0.00 0.0 31.76 3.61 R
2373 2794 0.749649 TTGGCCACAAAAACATCGCT 59.250 45.000 3.88 0.0 32.66 4.93 R
2556 2978 1.750022 ACACCTTTACTGCCCCCTAA 58.250 50.000 0.00 0.0 0.00 2.69 R
3467 3893 0.470341 GAGCAGGGGGAGGTATTGAC 59.530 60.000 0.00 0.0 0.00 3.18 R
3769 4195 1.903404 GCCCACTTTCCCCACAGTG 60.903 63.158 0.00 0.0 40.23 3.66 R
3935 4361 0.396811 GGTGGTGCTAACAGAGGTGT 59.603 55.000 0.00 0.0 39.19 4.16 R
5171 5628 0.961019 GCACATCAGCACAAAAGGGA 59.039 50.000 0.00 0.0 0.00 4.20 R
5597 6054 2.634815 ATGAGGAATGGCTGCTGTAG 57.365 50.000 0.00 0.0 0.00 2.74 R
5988 6448 3.198068 ACCAGTGCTATGCTAAATCACG 58.802 45.455 0.00 0.0 33.28 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.935203 TCTCTTTGATCGAGAAATGTGGC 59.065 43.478 0.00 0.00 34.77 5.01
35 36 2.951457 TGATCGAGAAATGTGGCGTA 57.049 45.000 0.00 0.00 0.00 4.42
40 41 2.165641 TCGAGAAATGTGGCGTATCTGT 59.834 45.455 0.00 0.00 0.00 3.41
41 42 2.930040 CGAGAAATGTGGCGTATCTGTT 59.070 45.455 0.00 0.00 0.00 3.16
42 43 3.370978 CGAGAAATGTGGCGTATCTGTTT 59.629 43.478 0.00 0.00 0.00 2.83
43 44 4.492570 CGAGAAATGTGGCGTATCTGTTTC 60.493 45.833 0.00 0.00 0.00 2.78
44 45 4.323417 AGAAATGTGGCGTATCTGTTTCA 58.677 39.130 0.00 0.00 0.00 2.69
45 46 4.943705 AGAAATGTGGCGTATCTGTTTCAT 59.056 37.500 0.00 0.00 0.00 2.57
46 47 6.112734 AGAAATGTGGCGTATCTGTTTCATA 58.887 36.000 0.00 0.00 0.00 2.15
47 48 6.597672 AGAAATGTGGCGTATCTGTTTCATAA 59.402 34.615 0.00 0.00 0.00 1.90
54 55 7.915397 GTGGCGTATCTGTTTCATAATTTCATT 59.085 33.333 0.00 0.00 0.00 2.57
83 84 2.033424 GCCGGATTCATGTTTTAGGCTC 59.967 50.000 5.05 0.00 40.12 4.70
86 87 3.065371 CGGATTCATGTTTTAGGCTCACC 59.935 47.826 0.00 0.00 0.00 4.02
87 88 3.381590 GGATTCATGTTTTAGGCTCACCC 59.618 47.826 0.00 0.00 36.11 4.61
88 89 2.507407 TCATGTTTTAGGCTCACCCC 57.493 50.000 0.00 0.00 36.11 4.95
89 90 1.094785 CATGTTTTAGGCTCACCCCG 58.905 55.000 0.00 0.00 36.11 5.73
90 91 0.034477 ATGTTTTAGGCTCACCCCGG 60.034 55.000 0.00 0.00 36.11 5.73
91 92 1.377612 GTTTTAGGCTCACCCCGGT 59.622 57.895 0.00 0.00 36.11 5.28
92 93 0.675837 GTTTTAGGCTCACCCCGGTC 60.676 60.000 0.00 0.00 36.11 4.79
93 94 0.838987 TTTTAGGCTCACCCCGGTCT 60.839 55.000 0.00 0.00 36.11 3.85
94 95 1.550130 TTTAGGCTCACCCCGGTCTG 61.550 60.000 0.00 0.00 36.11 3.51
95 96 2.741878 TTAGGCTCACCCCGGTCTGT 62.742 60.000 0.00 0.00 36.11 3.41
96 97 2.741878 TAGGCTCACCCCGGTCTGTT 62.742 60.000 0.00 0.00 36.11 3.16
97 98 2.430367 GCTCACCCCGGTCTGTTT 59.570 61.111 0.00 0.00 0.00 2.83
98 99 1.966451 GCTCACCCCGGTCTGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
99 100 1.450211 CTCACCCCGGTCTGTTTGT 59.550 57.895 0.00 0.00 0.00 2.83
100 101 0.179029 CTCACCCCGGTCTGTTTGTT 60.179 55.000 0.00 0.00 0.00 2.83
101 102 0.179040 TCACCCCGGTCTGTTTGTTC 60.179 55.000 0.00 0.00 0.00 3.18
102 103 1.227734 ACCCCGGTCTGTTTGTTCG 60.228 57.895 0.00 0.00 0.00 3.95
103 104 1.227734 CCCCGGTCTGTTTGTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
104 105 0.816421 CCCCGGTCTGTTTGTTCGTT 60.816 55.000 0.00 0.00 0.00 3.85
105 106 0.306533 CCCGGTCTGTTTGTTCGTTG 59.693 55.000 0.00 0.00 0.00 4.10
112 113 1.063488 GTTTGTTCGTTGCGGTGCT 59.937 52.632 0.00 0.00 0.00 4.40
156 157 2.290960 ACTGTTATGGGCTCTTTGACCC 60.291 50.000 0.00 0.00 45.70 4.46
186 187 4.090138 TGTATGTTTTAATGGCGTGCAG 57.910 40.909 0.00 0.00 0.00 4.41
200 201 2.688507 CGTGCAGTCATAGTTGGAACT 58.311 47.619 0.00 0.00 42.91 3.01
240 249 2.749076 GTGCACATTACCTGCTTGATCA 59.251 45.455 13.17 0.00 35.53 2.92
304 317 6.151648 TGTTGGATTGGATTGAACTGAGATTC 59.848 38.462 0.00 0.00 0.00 2.52
366 379 4.846779 TGTTTCTGTTGTCAAATAGCCC 57.153 40.909 0.00 0.00 0.00 5.19
501 515 4.826733 TGGCTGAGAAATGAAAGCTTGTTA 59.173 37.500 0.00 0.00 35.93 2.41
553 567 6.702716 TCGTGACCAAAATTAGGAAAGTTT 57.297 33.333 4.01 0.00 33.39 2.66
554 568 6.500041 TCGTGACCAAAATTAGGAAAGTTTG 58.500 36.000 0.00 4.54 45.61 2.93
570 584 0.038166 TTTGACCCCACTGCTCCATC 59.962 55.000 0.00 0.00 0.00 3.51
578 592 0.109597 CACTGCTCCATCGTTTTGCC 60.110 55.000 0.00 0.00 0.00 4.52
593 607 0.107752 TTGCCGCTAGATGTGCATGA 60.108 50.000 0.00 0.00 33.08 3.07
594 608 0.811219 TGCCGCTAGATGTGCATGAC 60.811 55.000 0.00 0.00 0.00 3.06
595 609 0.811219 GCCGCTAGATGTGCATGACA 60.811 55.000 0.00 0.00 39.53 3.58
648 679 9.620259 ATCTGAAGTATCTTAAATGTTCCCTTC 57.380 33.333 0.00 0.00 0.00 3.46
685 716 8.629158 TGGCATGTTTTACATAATCCTGTTATC 58.371 33.333 0.00 0.00 36.53 1.75
693 724 9.537192 TTTACATAATCCTGTTATCGTTCGAAT 57.463 29.630 0.00 0.00 0.00 3.34
860 892 8.809468 ATTCTGCTCATATGATATTGCTCATT 57.191 30.769 5.72 0.00 37.13 2.57
1692 1725 0.463295 ATCTTGGCATGCCTCGTCAG 60.463 55.000 35.53 22.07 36.94 3.51
1918 1951 1.219773 ATCATGAGGACCACTGCCAT 58.780 50.000 0.09 0.00 0.00 4.40
1933 1967 5.452216 CCACTGCCATGTTGTGCAATATAAT 60.452 40.000 0.00 0.00 36.98 1.28
1936 1970 3.670055 GCCATGTTGTGCAATATAATCGC 59.330 43.478 0.00 0.00 0.00 4.58
2005 2040 5.510671 AGTTGCAATTAACGTTCTTCACAG 58.489 37.500 2.82 0.00 35.73 3.66
2230 2268 6.276832 TCCTGTGGACAAGTATTACTGTAC 57.723 41.667 0.00 0.22 0.00 2.90
2231 2269 5.776208 TCCTGTGGACAAGTATTACTGTACA 59.224 40.000 0.00 0.00 0.00 2.90
2239 2660 8.248945 GGACAAGTATTACTGTACACATACTGT 58.751 37.037 14.29 13.70 43.56 3.55
2513 2935 1.561542 CCAAATGCTCCAGGACTAGGT 59.438 52.381 0.00 0.00 0.00 3.08
2531 2953 2.840651 AGGTATCCAAAGTGAGACAGGG 59.159 50.000 0.00 0.00 0.00 4.45
2894 3316 6.110707 GCCTGGTAAAACAGCTAATACTACA 58.889 40.000 0.00 0.00 37.16 2.74
3467 3893 1.732941 TGCCTGCCAACAGTATTACG 58.267 50.000 0.00 0.00 42.81 3.18
3769 4195 3.930229 GTGGAAAAACAGTTGGGTCAAAC 59.070 43.478 0.00 0.00 0.00 2.93
3770 4196 3.578716 TGGAAAAACAGTTGGGTCAAACA 59.421 39.130 0.00 0.00 32.21 2.83
4030 4456 1.035923 TGCCACCTGAAATCGCAAAA 58.964 45.000 0.00 0.00 0.00 2.44
4037 4463 5.147162 CACCTGAAATCGCAAAAGTAAGTC 58.853 41.667 0.00 0.00 0.00 3.01
4068 4494 2.372172 ACCTCTTGTCCTTCCGTCATTT 59.628 45.455 0.00 0.00 0.00 2.32
4071 4497 5.424252 ACCTCTTGTCCTTCCGTCATTTATA 59.576 40.000 0.00 0.00 0.00 0.98
4230 4656 7.362401 CCATTTAATGAAAGCTACTCTTGCACT 60.362 37.037 6.50 0.00 42.95 4.40
4231 4657 7.510549 TTTAATGAAAGCTACTCTTGCACTT 57.489 32.000 0.00 0.00 42.95 3.16
4266 4692 0.674581 CTTTGCATCTCGACCCTGCA 60.675 55.000 7.50 7.50 43.69 4.41
4291 4717 4.780021 AGGTGTTGAGGTTAGATCATCTGT 59.220 41.667 0.00 0.00 0.00 3.41
4294 4720 5.578727 GTGTTGAGGTTAGATCATCTGTGTC 59.421 44.000 0.00 0.00 0.00 3.67
4328 4754 5.637006 TTCCATCTTGAAAATACGGGTTG 57.363 39.130 0.00 0.00 0.00 3.77
4383 4809 4.025145 ACGCTACTGCAGTTTCTTTGTTAC 60.025 41.667 27.06 1.87 39.64 2.50
4387 4813 6.090358 GCTACTGCAGTTTCTTTGTTACGATA 59.910 38.462 27.06 0.00 39.41 2.92
4427 4853 6.382869 ACAGTGGATCTTATTTTGCTATGC 57.617 37.500 0.00 0.00 0.00 3.14
4450 4876 1.202348 GTTGCCAGGGTTCAGTTATGC 59.798 52.381 0.00 0.00 0.00 3.14
4592 5018 5.329035 AGTGTGTTTGTCATTTCTGCTTT 57.671 34.783 0.00 0.00 0.00 3.51
4632 5058 2.639065 TCATTGGCGAATCCTTGGTAC 58.361 47.619 0.00 0.00 35.26 3.34
4633 5059 2.238646 TCATTGGCGAATCCTTGGTACT 59.761 45.455 0.00 0.00 35.26 2.73
4634 5060 2.396590 TTGGCGAATCCTTGGTACTC 57.603 50.000 0.00 0.00 35.26 2.59
4635 5061 0.539986 TGGCGAATCCTTGGTACTCC 59.460 55.000 0.00 0.00 35.26 3.85
4636 5062 0.179054 GGCGAATCCTTGGTACTCCC 60.179 60.000 0.00 0.00 0.00 4.30
4637 5063 0.831307 GCGAATCCTTGGTACTCCCT 59.169 55.000 0.00 0.00 0.00 4.20
4638 5064 1.202545 GCGAATCCTTGGTACTCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
4639 5065 2.389715 CGAATCCTTGGTACTCCCTCT 58.610 52.381 0.00 0.00 0.00 3.69
4640 5066 2.101582 CGAATCCTTGGTACTCCCTCTG 59.898 54.545 0.00 0.00 0.00 3.35
4641 5067 2.950990 ATCCTTGGTACTCCCTCTGT 57.049 50.000 0.00 0.00 0.00 3.41
4642 5068 2.715763 TCCTTGGTACTCCCTCTGTT 57.284 50.000 0.00 0.00 0.00 3.16
4643 5069 2.537143 TCCTTGGTACTCCCTCTGTTC 58.463 52.381 0.00 0.00 0.00 3.18
4644 5070 2.158219 TCCTTGGTACTCCCTCTGTTCA 60.158 50.000 0.00 0.00 0.00 3.18
4645 5071 2.028020 CCTTGGTACTCCCTCTGTTCAC 60.028 54.545 0.00 0.00 0.00 3.18
4646 5072 2.696526 TGGTACTCCCTCTGTTCACT 57.303 50.000 0.00 0.00 0.00 3.41
4647 5073 2.972348 TGGTACTCCCTCTGTTCACTT 58.028 47.619 0.00 0.00 0.00 3.16
4648 5074 2.897969 TGGTACTCCCTCTGTTCACTTC 59.102 50.000 0.00 0.00 0.00 3.01
4649 5075 3.166679 GGTACTCCCTCTGTTCACTTCT 58.833 50.000 0.00 0.00 0.00 2.85
4650 5076 3.056465 GGTACTCCCTCTGTTCACTTCTG 60.056 52.174 0.00 0.00 0.00 3.02
4651 5077 2.683768 ACTCCCTCTGTTCACTTCTGT 58.316 47.619 0.00 0.00 0.00 3.41
4652 5078 3.845860 ACTCCCTCTGTTCACTTCTGTA 58.154 45.455 0.00 0.00 0.00 2.74
4653 5079 4.223953 ACTCCCTCTGTTCACTTCTGTAA 58.776 43.478 0.00 0.00 0.00 2.41
4654 5080 4.282195 ACTCCCTCTGTTCACTTCTGTAAG 59.718 45.833 0.00 0.00 38.77 2.34
4656 5082 4.281182 TCCCTCTGTTCACTTCTGTAAGTC 59.719 45.833 0.00 0.00 44.28 3.01
4657 5083 4.561105 CCTCTGTTCACTTCTGTAAGTCC 58.439 47.826 0.00 0.00 44.28 3.85
4658 5084 4.282195 CCTCTGTTCACTTCTGTAAGTCCT 59.718 45.833 0.00 0.00 44.28 3.85
4659 5085 5.221541 CCTCTGTTCACTTCTGTAAGTCCTT 60.222 44.000 0.00 0.00 44.28 3.36
4660 5086 5.601662 TCTGTTCACTTCTGTAAGTCCTTG 58.398 41.667 0.00 0.00 44.28 3.61
4661 5087 5.362717 TCTGTTCACTTCTGTAAGTCCTTGA 59.637 40.000 0.00 0.00 44.28 3.02
4662 5088 5.984725 TGTTCACTTCTGTAAGTCCTTGAA 58.015 37.500 0.00 0.00 44.28 2.69
4663 5089 6.049149 TGTTCACTTCTGTAAGTCCTTGAAG 58.951 40.000 0.00 0.00 44.28 3.02
4664 5090 6.127168 TGTTCACTTCTGTAAGTCCTTGAAGA 60.127 38.462 10.74 2.44 44.28 2.87
4665 5091 5.844004 TCACTTCTGTAAGTCCTTGAAGAC 58.156 41.667 10.74 0.00 44.28 3.01
4666 5092 5.362717 TCACTTCTGTAAGTCCTTGAAGACA 59.637 40.000 10.74 0.00 44.28 3.41
4667 5093 6.042093 TCACTTCTGTAAGTCCTTGAAGACAT 59.958 38.462 10.74 0.00 44.28 3.06
4668 5094 6.708054 CACTTCTGTAAGTCCTTGAAGACATT 59.292 38.462 10.74 0.00 44.28 2.71
4669 5095 7.227512 CACTTCTGTAAGTCCTTGAAGACATTT 59.772 37.037 10.74 0.00 44.28 2.32
4670 5096 7.442666 ACTTCTGTAAGTCCTTGAAGACATTTC 59.557 37.037 10.74 0.00 42.42 2.17
4671 5097 6.826668 TCTGTAAGTCCTTGAAGACATTTCA 58.173 36.000 0.00 0.00 39.34 2.69
4672 5098 6.931281 TCTGTAAGTCCTTGAAGACATTTCAG 59.069 38.462 0.00 0.00 39.34 3.02
4673 5099 6.826668 TGTAAGTCCTTGAAGACATTTCAGA 58.173 36.000 0.00 0.00 39.34 3.27
4674 5100 6.706270 TGTAAGTCCTTGAAGACATTTCAGAC 59.294 38.462 0.00 2.75 39.34 3.51
4675 5101 5.296151 AGTCCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 39.34 3.41
4676 5102 5.684704 AGTCCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 39.34 3.18
4677 5103 5.529060 AGTCCTTGAAGACATTTCAGACAAC 59.471 40.000 0.00 1.46 39.34 3.32
4678 5104 5.296780 GTCCTTGAAGACATTTCAGACAACA 59.703 40.000 0.00 0.00 36.73 3.33
4679 5105 6.016777 GTCCTTGAAGACATTTCAGACAACAT 60.017 38.462 0.00 0.00 36.73 2.71
4680 5106 6.016860 TCCTTGAAGACATTTCAGACAACATG 60.017 38.462 0.00 0.00 0.00 3.21
4681 5107 5.112220 TGAAGACATTTCAGACAACATGC 57.888 39.130 0.00 0.00 0.00 4.06
4682 5108 4.579753 TGAAGACATTTCAGACAACATGCA 59.420 37.500 0.00 0.00 0.00 3.96
4683 5109 5.067544 TGAAGACATTTCAGACAACATGCAA 59.932 36.000 0.00 0.00 0.00 4.08
4684 5110 5.518848 AGACATTTCAGACAACATGCAAA 57.481 34.783 0.00 0.00 0.00 3.68
4685 5111 6.092955 AGACATTTCAGACAACATGCAAAT 57.907 33.333 0.00 0.00 0.00 2.32
4686 5112 6.518493 AGACATTTCAGACAACATGCAAATT 58.482 32.000 0.00 0.00 0.00 1.82
4687 5113 7.660112 AGACATTTCAGACAACATGCAAATTA 58.340 30.769 0.00 0.00 0.00 1.40
4688 5114 7.811236 AGACATTTCAGACAACATGCAAATTAG 59.189 33.333 0.00 0.00 0.00 1.73
4689 5115 7.436118 ACATTTCAGACAACATGCAAATTAGT 58.564 30.769 0.00 0.00 0.00 2.24
4690 5116 7.927629 ACATTTCAGACAACATGCAAATTAGTT 59.072 29.630 0.00 0.00 0.00 2.24
4691 5117 7.928908 TTTCAGACAACATGCAAATTAGTTC 57.071 32.000 0.00 0.00 0.00 3.01
4692 5118 6.631971 TCAGACAACATGCAAATTAGTTCA 57.368 33.333 0.00 0.00 0.00 3.18
4693 5119 7.218228 TCAGACAACATGCAAATTAGTTCAT 57.782 32.000 0.00 0.00 0.00 2.57
4694 5120 7.660112 TCAGACAACATGCAAATTAGTTCATT 58.340 30.769 0.00 0.00 0.00 2.57
4695 5121 8.143193 TCAGACAACATGCAAATTAGTTCATTT 58.857 29.630 0.00 0.00 0.00 2.32
4696 5122 8.767085 CAGACAACATGCAAATTAGTTCATTTT 58.233 29.630 0.00 0.00 0.00 1.82
4697 5123 8.981647 AGACAACATGCAAATTAGTTCATTTTC 58.018 29.630 0.00 0.00 0.00 2.29
4698 5124 8.659925 ACAACATGCAAATTAGTTCATTTTCA 57.340 26.923 0.00 0.00 0.00 2.69
4699 5125 8.767085 ACAACATGCAAATTAGTTCATTTTCAG 58.233 29.630 0.00 0.00 0.00 3.02
4700 5126 7.355332 ACATGCAAATTAGTTCATTTTCAGC 57.645 32.000 0.00 0.00 0.00 4.26
4701 5127 7.156673 ACATGCAAATTAGTTCATTTTCAGCT 58.843 30.769 0.00 0.00 0.00 4.24
4702 5128 7.117236 ACATGCAAATTAGTTCATTTTCAGCTG 59.883 33.333 7.63 7.63 0.00 4.24
4703 5129 6.514947 TGCAAATTAGTTCATTTTCAGCTGT 58.485 32.000 14.67 0.00 0.00 4.40
4704 5130 6.642131 TGCAAATTAGTTCATTTTCAGCTGTC 59.358 34.615 14.67 0.00 0.00 3.51
4705 5131 6.865205 GCAAATTAGTTCATTTTCAGCTGTCT 59.135 34.615 14.67 3.70 0.00 3.41
4706 5132 7.148853 GCAAATTAGTTCATTTTCAGCTGTCTG 60.149 37.037 14.67 7.35 41.67 3.51
4707 5133 7.750229 AATTAGTTCATTTTCAGCTGTCTGA 57.250 32.000 14.67 9.54 46.90 3.27
4715 5141 2.890808 TCAGCTGTCTGAAACGACTT 57.109 45.000 14.67 0.00 45.69 3.01
4717 5143 4.521130 TCAGCTGTCTGAAACGACTTAT 57.479 40.909 14.67 0.00 45.69 1.73
4718 5144 5.638596 TCAGCTGTCTGAAACGACTTATA 57.361 39.130 14.67 0.00 45.69 0.98
4719 5145 6.020971 TCAGCTGTCTGAAACGACTTATAA 57.979 37.500 14.67 0.00 45.69 0.98
4720 5146 6.452242 TCAGCTGTCTGAAACGACTTATAAA 58.548 36.000 14.67 0.00 45.69 1.40
4721 5147 6.926826 TCAGCTGTCTGAAACGACTTATAAAA 59.073 34.615 14.67 0.00 45.69 1.52
4722 5148 7.116376 TCAGCTGTCTGAAACGACTTATAAAAG 59.884 37.037 14.67 0.00 45.69 2.27
4723 5149 7.095607 CAGCTGTCTGAAACGACTTATAAAAGT 60.096 37.037 5.25 0.00 44.58 2.66
4724 5150 7.010023 GCTGTCTGAAACGACTTATAAAAGTG 58.990 38.462 0.00 0.00 46.09 3.16
4725 5151 7.095774 GCTGTCTGAAACGACTTATAAAAGTGA 60.096 37.037 0.00 0.00 46.09 3.41
4726 5152 8.651391 TGTCTGAAACGACTTATAAAAGTGAA 57.349 30.769 0.00 0.00 46.09 3.18
4727 5153 8.545420 TGTCTGAAACGACTTATAAAAGTGAAC 58.455 33.333 0.00 0.00 46.09 3.18
4728 5154 7.734726 GTCTGAAACGACTTATAAAAGTGAACG 59.265 37.037 0.00 0.00 46.09 3.95
4729 5155 6.879962 TGAAACGACTTATAAAAGTGAACGG 58.120 36.000 0.00 0.00 46.09 4.44
4730 5156 6.700960 TGAAACGACTTATAAAAGTGAACGGA 59.299 34.615 0.00 0.00 46.09 4.69
4731 5157 6.701432 AACGACTTATAAAAGTGAACGGAG 57.299 37.500 0.00 0.00 46.09 4.63
4732 5158 5.166398 ACGACTTATAAAAGTGAACGGAGG 58.834 41.667 0.00 0.00 46.09 4.30
4733 5159 4.565564 CGACTTATAAAAGTGAACGGAGGG 59.434 45.833 0.00 0.00 46.09 4.30
4734 5160 5.622914 CGACTTATAAAAGTGAACGGAGGGA 60.623 44.000 0.00 0.00 46.09 4.20
4735 5161 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
4736 5162 5.247792 ACTTATAAAAGTGAACGGAGGGAGT 59.752 40.000 0.00 0.00 44.40 3.85
4737 5163 6.438425 ACTTATAAAAGTGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 44.40 2.59
4844 5270 0.261696 ACCTGCCCACCAAGTTTTCT 59.738 50.000 0.00 0.00 0.00 2.52
5000 5428 3.305676 CCAACATAACCGATGCCAAACAA 60.306 43.478 0.00 0.00 39.39 2.83
5081 5538 7.911651 TCTCCATTCAGAAGAGTAAGATGTTT 58.088 34.615 0.58 0.00 0.00 2.83
5082 5539 8.378565 TCTCCATTCAGAAGAGTAAGATGTTTT 58.621 33.333 0.58 0.00 0.00 2.43
5083 5540 8.924511 TCCATTCAGAAGAGTAAGATGTTTTT 57.075 30.769 0.00 0.00 0.00 1.94
5107 5564 6.808008 TTTTGAAGGCAGAAGAGTAAGATG 57.192 37.500 0.00 0.00 0.00 2.90
5108 5565 5.489792 TTGAAGGCAGAAGAGTAAGATGT 57.510 39.130 0.00 0.00 0.00 3.06
5109 5566 5.489792 TGAAGGCAGAAGAGTAAGATGTT 57.510 39.130 0.00 0.00 0.00 2.71
5117 5574 7.120432 GGCAGAAGAGTAAGATGTTGAAGAAAT 59.880 37.037 0.00 0.00 0.00 2.17
5166 5623 4.150627 ACTTTGACTGATCGTTCATGTTCG 59.849 41.667 0.00 0.00 0.00 3.95
5167 5624 2.606108 TGACTGATCGTTCATGTTCGG 58.394 47.619 10.93 2.52 0.00 4.30
5168 5625 2.029380 TGACTGATCGTTCATGTTCGGT 60.029 45.455 10.93 5.39 31.49 4.69
5169 5626 2.337583 ACTGATCGTTCATGTTCGGTG 58.662 47.619 10.93 0.00 0.00 4.94
5170 5627 2.288825 ACTGATCGTTCATGTTCGGTGT 60.289 45.455 10.93 0.00 0.00 4.16
5171 5628 2.736721 CTGATCGTTCATGTTCGGTGTT 59.263 45.455 10.93 0.00 0.00 3.32
5172 5629 2.734606 TGATCGTTCATGTTCGGTGTTC 59.265 45.455 10.93 5.89 0.00 3.18
5194 5651 1.790623 CTTTTGTGCTGATGTGCTTGC 59.209 47.619 0.00 0.00 0.00 4.01
5310 5767 4.588951 TCATCTGTTGTACTGGAAGACACT 59.411 41.667 0.00 0.00 37.43 3.55
5529 5986 3.731547 CCCACTGGCATCTCAGGA 58.268 61.111 0.00 0.00 38.98 3.86
5597 6054 0.746923 TCATCTGCTGCCACATCTGC 60.747 55.000 0.00 0.00 0.00 4.26
5633 6090 3.871594 CCTCATAGTGAATCCGTTCCAAC 59.128 47.826 0.00 0.00 33.26 3.77
5651 6108 4.889409 TCCAACTGCAGAAAGTTCAAAGAT 59.111 37.500 23.35 0.00 38.34 2.40
5652 6109 5.360714 TCCAACTGCAGAAAGTTCAAAGATT 59.639 36.000 23.35 0.00 38.34 2.40
5762 6219 1.880819 GCCGTCTTTACAGACCCGGA 61.881 60.000 0.73 0.00 46.19 5.14
5786 6243 0.251354 CCACAGTGAGGTATGCTGCT 59.749 55.000 0.62 0.00 33.87 4.24
5802 6259 4.768583 TGCTGCTCTTTTTGTTGGAAAAT 58.231 34.783 0.00 0.00 0.00 1.82
5817 6274 8.458573 TGTTGGAAAATAGTTGTAGTTCATGT 57.541 30.769 0.00 0.00 0.00 3.21
5835 6292 9.480053 AGTTCATGTCAAGGTTTGAAATATTTG 57.520 29.630 5.17 0.00 42.15 2.32
5893 6352 2.223433 ACTATCGTGTTACGCTGCTACC 60.223 50.000 0.00 0.00 42.21 3.18
5927 6386 9.350357 CTGTTGAATAGTTTGAAGGAAATCATG 57.650 33.333 0.00 0.00 0.00 3.07
5985 6445 5.931294 TGGCGGGATTAAGTATGACATAAA 58.069 37.500 0.00 0.00 0.00 1.40
5986 6446 6.358178 TGGCGGGATTAAGTATGACATAAAA 58.642 36.000 0.00 0.00 0.00 1.52
5988 6448 7.174253 TGGCGGGATTAAGTATGACATAAAATC 59.826 37.037 13.27 13.27 0.00 2.17
6040 6501 1.021202 TGTGCAGGGTCTGAAAAACG 58.979 50.000 0.00 0.00 32.44 3.60
6073 6534 5.514834 CCAACTGGTTCCCTCAGATTTCTAA 60.515 44.000 0.00 0.00 36.22 2.10
6074 6535 5.843019 ACTGGTTCCCTCAGATTTCTAAA 57.157 39.130 0.00 0.00 36.22 1.85
6161 6622 6.039717 AGTTTGATGAACAGTTGTTATGTGCT 59.960 34.615 0.00 0.00 40.84 4.40
6174 6635 6.149129 TGTTATGTGCTACATGGAGTCTAG 57.851 41.667 6.84 0.00 39.53 2.43
6182 6643 5.658634 TGCTACATGGAGTCTAGTTCAGATT 59.341 40.000 6.84 0.00 35.17 2.40
6263 6730 2.747855 CCGGTTCCAGCTGCCTTC 60.748 66.667 8.66 0.00 0.00 3.46
6273 6740 6.183360 GGTTCCAGCTGCCTTCATTTATTTAT 60.183 38.462 8.66 0.00 0.00 1.40
6274 6741 6.395426 TCCAGCTGCCTTCATTTATTTATG 57.605 37.500 8.66 0.00 0.00 1.90
6275 6742 5.893255 TCCAGCTGCCTTCATTTATTTATGT 59.107 36.000 8.66 0.00 0.00 2.29
6276 6743 7.059788 TCCAGCTGCCTTCATTTATTTATGTA 58.940 34.615 8.66 0.00 0.00 2.29
6277 6744 7.725397 TCCAGCTGCCTTCATTTATTTATGTAT 59.275 33.333 8.66 0.00 0.00 2.29
6340 6807 5.986135 GTCTATCAGCTATCATGGAACGTTT 59.014 40.000 0.46 0.00 0.00 3.60
6383 6850 4.792521 AACAGTGAAGCTCAGTAGGTAG 57.207 45.455 0.00 0.00 31.75 3.18
6385 6852 3.093057 CAGTGAAGCTCAGTAGGTAGGT 58.907 50.000 0.00 0.00 31.75 3.08
6386 6853 4.263816 ACAGTGAAGCTCAGTAGGTAGGTA 60.264 45.833 0.00 0.00 31.75 3.08
6387 6854 4.096682 CAGTGAAGCTCAGTAGGTAGGTAC 59.903 50.000 0.00 0.00 31.75 3.34
6388 6855 4.015084 GTGAAGCTCAGTAGGTAGGTACA 58.985 47.826 0.00 0.00 31.75 2.90
6480 6949 8.043113 AGAAATATTGTGTAAGTGAGCTGATGA 58.957 33.333 0.00 0.00 0.00 2.92
6597 7194 5.817816 AGTTCTTGAGTAGTTCACCAACAAG 59.182 40.000 0.00 0.00 34.94 3.16
6599 7196 3.485463 TGAGTAGTTCACCAACAAGGG 57.515 47.619 0.00 0.00 43.89 3.95
6608 7205 6.790319 AGTTCACCAACAAGGGTCTTTATAT 58.210 36.000 0.00 0.00 43.89 0.86
6610 7207 7.728532 AGTTCACCAACAAGGGTCTTTATATTT 59.271 33.333 0.00 0.00 43.89 1.40
6753 7370 7.254795 CCCTCCGTTCACAAATATAAGATGTTC 60.255 40.741 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.540515 ACAGATACGCCACATTTCTCG 58.459 47.619 0.00 0.00 0.00 4.04
40 41 6.585702 CGGCACACTCAAATGAAATTATGAAA 59.414 34.615 0.00 0.00 33.67 2.69
41 42 6.092092 CGGCACACTCAAATGAAATTATGAA 58.908 36.000 0.00 0.00 33.67 2.57
42 43 5.392919 CCGGCACACTCAAATGAAATTATGA 60.393 40.000 0.00 0.00 33.67 2.15
43 44 4.799949 CCGGCACACTCAAATGAAATTATG 59.200 41.667 0.00 0.00 33.67 1.90
44 45 4.704540 TCCGGCACACTCAAATGAAATTAT 59.295 37.500 0.00 0.00 33.67 1.28
45 46 4.075682 TCCGGCACACTCAAATGAAATTA 58.924 39.130 0.00 0.00 33.67 1.40
46 47 2.890311 TCCGGCACACTCAAATGAAATT 59.110 40.909 0.00 0.00 38.98 1.82
47 48 2.513753 TCCGGCACACTCAAATGAAAT 58.486 42.857 0.00 0.00 0.00 2.17
54 55 1.271325 ACATGAATCCGGCACACTCAA 60.271 47.619 0.00 0.00 0.00 3.02
83 84 1.503818 CGAACAAACAGACCGGGGTG 61.504 60.000 6.32 4.86 0.00 4.61
86 87 0.306533 CAACGAACAAACAGACCGGG 59.693 55.000 6.32 0.00 0.00 5.73
87 88 0.316689 GCAACGAACAAACAGACCGG 60.317 55.000 0.00 0.00 0.00 5.28
88 89 0.653323 CGCAACGAACAAACAGACCG 60.653 55.000 0.00 0.00 0.00 4.79
89 90 0.316689 CCGCAACGAACAAACAGACC 60.317 55.000 0.00 0.00 0.00 3.85
90 91 0.375803 ACCGCAACGAACAAACAGAC 59.624 50.000 0.00 0.00 0.00 3.51
91 92 0.375454 CACCGCAACGAACAAACAGA 59.625 50.000 0.00 0.00 0.00 3.41
92 93 1.199852 GCACCGCAACGAACAAACAG 61.200 55.000 0.00 0.00 0.00 3.16
93 94 1.226435 GCACCGCAACGAACAAACA 60.226 52.632 0.00 0.00 0.00 2.83
94 95 1.063488 AGCACCGCAACGAACAAAC 59.937 52.632 0.00 0.00 0.00 2.93
95 96 1.063327 CAGCACCGCAACGAACAAA 59.937 52.632 0.00 0.00 0.00 2.83
96 97 2.109739 ACAGCACCGCAACGAACAA 61.110 52.632 0.00 0.00 0.00 2.83
97 98 2.512745 ACAGCACCGCAACGAACA 60.513 55.556 0.00 0.00 0.00 3.18
98 99 2.052237 CACAGCACCGCAACGAAC 60.052 61.111 0.00 0.00 0.00 3.95
99 100 2.202946 TCACAGCACCGCAACGAA 60.203 55.556 0.00 0.00 0.00 3.85
100 101 2.636778 TTCTCACAGCACCGCAACGA 62.637 55.000 0.00 0.00 0.00 3.85
101 102 1.568612 ATTCTCACAGCACCGCAACG 61.569 55.000 0.00 0.00 0.00 4.10
102 103 0.110056 CATTCTCACAGCACCGCAAC 60.110 55.000 0.00 0.00 0.00 4.17
103 104 0.534877 ACATTCTCACAGCACCGCAA 60.535 50.000 0.00 0.00 0.00 4.85
104 105 0.950555 GACATTCTCACAGCACCGCA 60.951 55.000 0.00 0.00 0.00 5.69
105 106 1.639298 GGACATTCTCACAGCACCGC 61.639 60.000 0.00 0.00 0.00 5.68
112 113 2.700371 ACACTGACTGGACATTCTCACA 59.300 45.455 0.00 0.00 0.00 3.58
148 149 1.101049 ACAGTGGCAACGGGTCAAAG 61.101 55.000 0.00 0.00 42.51 2.77
156 157 4.856487 CCATTAAAACATACAGTGGCAACG 59.144 41.667 0.00 0.00 42.51 4.10
180 181 2.413112 CAGTTCCAACTATGACTGCACG 59.587 50.000 0.00 0.00 37.08 5.34
186 187 8.443937 GTTACTCATTTCAGTTCCAACTATGAC 58.556 37.037 0.00 0.00 37.08 3.06
200 201 4.642437 TGCACAAAGTGGTTACTCATTTCA 59.358 37.500 0.00 0.00 35.69 2.69
240 249 9.224267 CCATATTTCCAAGAACGAGAATATCAT 57.776 33.333 0.00 0.00 0.00 2.45
304 317 7.668492 TCTCATCCTGATTATGACATTCTCAG 58.332 38.462 15.20 15.20 34.48 3.35
491 505 6.591750 TCTAGAGTAGCACTAACAAGCTTT 57.408 37.500 0.00 0.00 42.05 3.51
501 515 7.889873 ATTTGTAGACATCTAGAGTAGCACT 57.110 36.000 0.00 0.00 0.00 4.40
534 548 6.220930 GGGTCAAACTTTCCTAATTTTGGTC 58.779 40.000 0.00 0.00 35.67 4.02
553 567 2.659063 CGATGGAGCAGTGGGGTCA 61.659 63.158 0.00 0.00 45.90 4.02
554 568 2.185310 AACGATGGAGCAGTGGGGTC 62.185 60.000 0.00 0.00 43.35 4.46
556 570 0.609131 AAAACGATGGAGCAGTGGGG 60.609 55.000 0.00 0.00 0.00 4.96
570 584 0.521242 GCACATCTAGCGGCAAAACG 60.521 55.000 1.45 0.00 0.00 3.60
578 592 2.476821 TCATGTCATGCACATCTAGCG 58.523 47.619 8.03 0.00 44.60 4.26
593 607 6.139679 TCCCTACTCCATTTTCTTTCATGT 57.860 37.500 0.00 0.00 0.00 3.21
594 608 6.604795 ACATCCCTACTCCATTTTCTTTCATG 59.395 38.462 0.00 0.00 0.00 3.07
595 609 6.735556 ACATCCCTACTCCATTTTCTTTCAT 58.264 36.000 0.00 0.00 0.00 2.57
648 679 8.083014 ATGTAAAACATGCCAGTCCATGGATG 62.083 42.308 19.62 13.43 44.18 3.51
685 716 0.724549 TTCGATGCCCAATTCGAACG 59.275 50.000 0.00 0.00 46.17 3.95
693 724 3.197766 AGACTGAACTATTCGATGCCCAA 59.802 43.478 0.00 0.00 0.00 4.12
771 803 1.082690 GCTCTAACAACAGCAGGAGC 58.917 55.000 0.00 0.00 39.14 4.70
860 892 6.493115 TGAGGCATCAGGACAGAAAATAAAAA 59.507 34.615 0.00 0.00 0.00 1.94
865 897 3.726557 TGAGGCATCAGGACAGAAAAT 57.273 42.857 0.00 0.00 0.00 1.82
1692 1725 3.246619 CTCCTCAAAGTCTCTACAACGC 58.753 50.000 0.00 0.00 0.00 4.84
1884 1917 7.121168 GGTCCTCATGATACAGAAAATGTGAAA 59.879 37.037 0.00 0.00 43.80 2.69
1918 1951 3.243035 GGCTGCGATTATATTGCACAACA 60.243 43.478 0.00 0.00 44.46 3.33
1944 1978 2.037772 ACAGCACTTAGAGGACACCTTG 59.962 50.000 0.00 0.00 31.76 3.61
2005 2040 4.941873 CAGTTAGGATTTTGGACAGGGTAC 59.058 45.833 0.00 0.00 0.00 3.34
2269 2690 9.638239 GAAGAATAAATTACTCCAAAACATGCA 57.362 29.630 0.00 0.00 0.00 3.96
2373 2794 0.749649 TTGGCCACAAAAACATCGCT 59.250 45.000 3.88 0.00 32.66 4.93
2513 2935 3.515502 CAGTCCCTGTCTCACTTTGGATA 59.484 47.826 0.00 0.00 0.00 2.59
2531 2953 7.639945 AGTTTGTTAAGTTAACATGAGCAGTC 58.360 34.615 25.14 11.67 46.89 3.51
2556 2978 1.750022 ACACCTTTACTGCCCCCTAA 58.250 50.000 0.00 0.00 0.00 2.69
2894 3316 2.254546 TTCCAGTTGCACTTGTCGAT 57.745 45.000 0.00 0.00 0.00 3.59
3464 3890 1.784358 CAGGGGGAGGTATTGACGTA 58.216 55.000 0.00 0.00 0.00 3.57
3467 3893 0.470341 GAGCAGGGGGAGGTATTGAC 59.530 60.000 0.00 0.00 0.00 3.18
3769 4195 1.903404 GCCCACTTTCCCCACAGTG 60.903 63.158 0.00 0.00 40.23 3.66
3770 4196 2.520968 GCCCACTTTCCCCACAGT 59.479 61.111 0.00 0.00 0.00 3.55
3925 4351 2.938956 ACAGAGGTGTTAGCTGCTTT 57.061 45.000 7.79 0.00 30.30 3.51
3935 4361 0.396811 GGTGGTGCTAACAGAGGTGT 59.603 55.000 0.00 0.00 39.19 4.16
3937 4363 1.671742 CGGTGGTGCTAACAGAGGT 59.328 57.895 0.00 0.00 0.00 3.85
4030 4456 5.434182 AGAGGTTAGGTAGTCGACTTACT 57.566 43.478 25.44 22.54 0.00 2.24
4037 4463 3.354467 AGGACAAGAGGTTAGGTAGTCG 58.646 50.000 0.00 0.00 0.00 4.18
4068 4494 8.808092 CACCCTTTTTGGTTGGTTAAGAATATA 58.192 33.333 0.00 0.00 36.12 0.86
4071 4497 5.663556 TCACCCTTTTTGGTTGGTTAAGAAT 59.336 36.000 0.00 0.00 36.12 2.40
4189 4615 7.327214 TCATTAAATGGTAAGGATGCCAAAAC 58.673 34.615 0.00 0.00 45.01 2.43
4238 4664 5.297547 GGTCGAGATGCAAAGGATAACATA 58.702 41.667 0.00 0.00 0.00 2.29
4252 4678 3.902515 CCTATGCAGGGTCGAGATG 57.097 57.895 0.00 0.00 38.41 2.90
4266 4692 6.613271 ACAGATGATCTAACCTCAACACCTAT 59.387 38.462 0.00 0.00 0.00 2.57
4291 4717 2.636647 TGGAATGTGCTTGTGAGACA 57.363 45.000 0.00 0.00 0.00 3.41
4294 4720 3.754850 TCAAGATGGAATGTGCTTGTGAG 59.245 43.478 0.00 0.00 38.95 3.51
4383 4809 9.689075 CACTGTTGTGTAACTGAATAAATATCG 57.311 33.333 0.00 0.00 39.24 2.92
4387 4813 8.635765 ATCCACTGTTGTGTAACTGAATAAAT 57.364 30.769 0.00 0.00 42.34 1.40
4555 4981 5.964958 AACACACTAGCACAGCAAAATAT 57.035 34.783 0.00 0.00 0.00 1.28
4632 5058 4.282195 ACTTACAGAAGTGAACAGAGGGAG 59.718 45.833 0.00 0.00 44.50 4.30
4633 5059 4.223953 ACTTACAGAAGTGAACAGAGGGA 58.776 43.478 0.00 0.00 44.50 4.20
4634 5060 4.561105 GACTTACAGAAGTGAACAGAGGG 58.439 47.826 0.00 0.00 46.23 4.30
4635 5061 4.282195 AGGACTTACAGAAGTGAACAGAGG 59.718 45.833 0.00 0.00 46.23 3.69
4636 5062 5.461032 AGGACTTACAGAAGTGAACAGAG 57.539 43.478 0.00 0.00 46.23 3.35
4637 5063 5.362717 TCAAGGACTTACAGAAGTGAACAGA 59.637 40.000 0.00 0.00 46.23 3.41
4638 5064 5.601662 TCAAGGACTTACAGAAGTGAACAG 58.398 41.667 0.00 0.00 46.23 3.16
4639 5065 5.607939 TCAAGGACTTACAGAAGTGAACA 57.392 39.130 0.00 0.00 46.23 3.18
4640 5066 6.201234 GTCTTCAAGGACTTACAGAAGTGAAC 59.799 42.308 9.20 0.86 46.23 3.18
4641 5067 6.127168 TGTCTTCAAGGACTTACAGAAGTGAA 60.127 38.462 9.20 0.00 46.23 3.18
4642 5068 5.362717 TGTCTTCAAGGACTTACAGAAGTGA 59.637 40.000 9.20 0.00 46.23 3.41
4643 5069 5.601662 TGTCTTCAAGGACTTACAGAAGTG 58.398 41.667 9.20 0.00 46.23 3.16
4645 5071 7.442364 TGAAATGTCTTCAAGGACTTACAGAAG 59.558 37.037 0.00 0.00 37.60 2.85
4646 5072 7.279615 TGAAATGTCTTCAAGGACTTACAGAA 58.720 34.615 0.00 0.00 37.16 3.02
4647 5073 6.826668 TGAAATGTCTTCAAGGACTTACAGA 58.173 36.000 0.00 0.00 37.16 3.41
4648 5074 6.931281 TCTGAAATGTCTTCAAGGACTTACAG 59.069 38.462 0.00 0.00 37.16 2.74
4649 5075 6.706270 GTCTGAAATGTCTTCAAGGACTTACA 59.294 38.462 0.00 0.00 37.16 2.41
4650 5076 6.706270 TGTCTGAAATGTCTTCAAGGACTTAC 59.294 38.462 7.80 0.00 37.16 2.34
4651 5077 6.826668 TGTCTGAAATGTCTTCAAGGACTTA 58.173 36.000 7.80 0.00 37.16 2.24
4652 5078 5.684704 TGTCTGAAATGTCTTCAAGGACTT 58.315 37.500 7.80 0.00 37.16 3.01
4653 5079 5.296151 TGTCTGAAATGTCTTCAAGGACT 57.704 39.130 7.80 0.00 37.16 3.85
4654 5080 5.296780 TGTTGTCTGAAATGTCTTCAAGGAC 59.703 40.000 0.00 0.00 36.81 3.85
4655 5081 5.436175 TGTTGTCTGAAATGTCTTCAAGGA 58.564 37.500 0.00 0.00 0.00 3.36
4656 5082 5.756195 TGTTGTCTGAAATGTCTTCAAGG 57.244 39.130 0.00 0.00 0.00 3.61
4657 5083 5.628193 GCATGTTGTCTGAAATGTCTTCAAG 59.372 40.000 0.00 0.00 0.00 3.02
4658 5084 5.067544 TGCATGTTGTCTGAAATGTCTTCAA 59.932 36.000 0.00 0.00 0.00 2.69
4659 5085 4.579753 TGCATGTTGTCTGAAATGTCTTCA 59.420 37.500 0.00 0.00 0.00 3.02
4660 5086 5.112220 TGCATGTTGTCTGAAATGTCTTC 57.888 39.130 0.00 0.00 0.00 2.87
4661 5087 5.518848 TTGCATGTTGTCTGAAATGTCTT 57.481 34.783 0.00 0.00 0.00 3.01
4662 5088 5.518848 TTTGCATGTTGTCTGAAATGTCT 57.481 34.783 0.00 0.00 0.00 3.41
4663 5089 6.774354 AATTTGCATGTTGTCTGAAATGTC 57.226 33.333 0.00 0.00 0.00 3.06
4664 5090 7.436118 ACTAATTTGCATGTTGTCTGAAATGT 58.564 30.769 0.00 0.00 0.00 2.71
4665 5091 7.878477 ACTAATTTGCATGTTGTCTGAAATG 57.122 32.000 0.00 0.00 0.00 2.32
4666 5092 8.143193 TGAACTAATTTGCATGTTGTCTGAAAT 58.857 29.630 0.00 0.00 0.00 2.17
4667 5093 7.487484 TGAACTAATTTGCATGTTGTCTGAAA 58.513 30.769 0.00 0.00 0.00 2.69
4668 5094 7.036996 TGAACTAATTTGCATGTTGTCTGAA 57.963 32.000 0.00 0.00 0.00 3.02
4669 5095 6.631971 TGAACTAATTTGCATGTTGTCTGA 57.368 33.333 0.00 0.00 0.00 3.27
4670 5096 7.878477 AATGAACTAATTTGCATGTTGTCTG 57.122 32.000 0.00 0.00 0.00 3.51
4671 5097 8.891671 AAAATGAACTAATTTGCATGTTGTCT 57.108 26.923 0.00 0.00 30.21 3.41
4672 5098 8.763356 TGAAAATGAACTAATTTGCATGTTGTC 58.237 29.630 0.00 0.00 31.37 3.18
4673 5099 8.659925 TGAAAATGAACTAATTTGCATGTTGT 57.340 26.923 0.00 0.00 31.37 3.32
4674 5100 7.742963 GCTGAAAATGAACTAATTTGCATGTTG 59.257 33.333 0.00 0.00 35.09 3.33
4675 5101 7.658575 AGCTGAAAATGAACTAATTTGCATGTT 59.341 29.630 0.00 0.00 35.09 2.71
4676 5102 7.117236 CAGCTGAAAATGAACTAATTTGCATGT 59.883 33.333 8.42 0.00 35.09 3.21
4677 5103 7.117236 ACAGCTGAAAATGAACTAATTTGCATG 59.883 33.333 23.35 0.00 35.09 4.06
4678 5104 7.156673 ACAGCTGAAAATGAACTAATTTGCAT 58.843 30.769 23.35 0.00 35.09 3.96
4679 5105 6.514947 ACAGCTGAAAATGAACTAATTTGCA 58.485 32.000 23.35 0.00 33.49 4.08
4680 5106 6.865205 AGACAGCTGAAAATGAACTAATTTGC 59.135 34.615 23.35 0.00 30.21 3.68
4681 5107 8.224169 CAGACAGCTGAAAATGAACTAATTTG 57.776 34.615 23.35 0.00 45.17 2.32
4697 5123 6.706055 TTTATAAGTCGTTTCAGACAGCTG 57.294 37.500 13.48 13.48 43.24 4.24
4698 5124 6.929606 ACTTTTATAAGTCGTTTCAGACAGCT 59.070 34.615 0.00 0.00 40.60 4.24
4699 5125 7.010023 CACTTTTATAAGTCGTTTCAGACAGC 58.990 38.462 0.00 0.00 42.67 4.40
4700 5126 8.294341 TCACTTTTATAAGTCGTTTCAGACAG 57.706 34.615 0.00 0.00 42.67 3.51
4701 5127 8.545420 GTTCACTTTTATAAGTCGTTTCAGACA 58.455 33.333 0.00 0.00 42.67 3.41
4702 5128 7.734726 CGTTCACTTTTATAAGTCGTTTCAGAC 59.265 37.037 0.00 0.00 42.67 3.51
4703 5129 7.095940 CCGTTCACTTTTATAAGTCGTTTCAGA 60.096 37.037 0.00 0.00 42.67 3.27
4704 5130 7.007697 CCGTTCACTTTTATAAGTCGTTTCAG 58.992 38.462 0.00 0.00 42.67 3.02
4705 5131 6.700960 TCCGTTCACTTTTATAAGTCGTTTCA 59.299 34.615 0.00 0.00 42.67 2.69
4706 5132 7.109006 TCCGTTCACTTTTATAAGTCGTTTC 57.891 36.000 0.00 0.00 42.67 2.78
4707 5133 6.146673 CCTCCGTTCACTTTTATAAGTCGTTT 59.853 38.462 0.00 0.00 42.67 3.60
4708 5134 5.636543 CCTCCGTTCACTTTTATAAGTCGTT 59.363 40.000 0.00 0.00 42.67 3.85
4709 5135 5.166398 CCTCCGTTCACTTTTATAAGTCGT 58.834 41.667 0.00 0.00 42.67 4.34
4710 5136 4.565564 CCCTCCGTTCACTTTTATAAGTCG 59.434 45.833 0.00 0.00 42.67 4.18
4711 5137 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
4712 5138 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
4713 5139 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
4714 5140 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
4715 5141 7.781693 ACTATACTCCCTCCGTTCACTTTTATA 59.218 37.037 0.00 0.00 0.00 0.98
4716 5142 5.952347 ATACTCCCTCCGTTCACTTTTAT 57.048 39.130 0.00 0.00 0.00 1.40
4717 5143 5.954150 ACTATACTCCCTCCGTTCACTTTTA 59.046 40.000 0.00 0.00 0.00 1.52
4718 5144 4.776308 ACTATACTCCCTCCGTTCACTTTT 59.224 41.667 0.00 0.00 0.00 2.27
4719 5145 4.159879 CACTATACTCCCTCCGTTCACTTT 59.840 45.833 0.00 0.00 0.00 2.66
4720 5146 3.700038 CACTATACTCCCTCCGTTCACTT 59.300 47.826 0.00 0.00 0.00 3.16
4721 5147 3.288964 CACTATACTCCCTCCGTTCACT 58.711 50.000 0.00 0.00 0.00 3.41
4722 5148 3.022406 ACACTATACTCCCTCCGTTCAC 58.978 50.000 0.00 0.00 0.00 3.18
4723 5149 3.377253 ACACTATACTCCCTCCGTTCA 57.623 47.619 0.00 0.00 0.00 3.18
4724 5150 4.732672 AAACACTATACTCCCTCCGTTC 57.267 45.455 0.00 0.00 0.00 3.95
4725 5151 4.285260 ACAAAACACTATACTCCCTCCGTT 59.715 41.667 0.00 0.00 0.00 4.44
4726 5152 3.836562 ACAAAACACTATACTCCCTCCGT 59.163 43.478 0.00 0.00 0.00 4.69
4727 5153 4.159879 AGACAAAACACTATACTCCCTCCG 59.840 45.833 0.00 0.00 0.00 4.63
4728 5154 5.395435 GGAGACAAAACACTATACTCCCTCC 60.395 48.000 0.00 0.00 37.17 4.30
4729 5155 5.187186 TGGAGACAAAACACTATACTCCCTC 59.813 44.000 0.00 0.00 40.86 4.30
4730 5156 5.091552 TGGAGACAAAACACTATACTCCCT 58.908 41.667 0.00 0.00 40.86 4.20
4731 5157 5.046520 ACTGGAGACAAAACACTATACTCCC 60.047 44.000 0.00 0.00 42.06 4.30
4732 5158 6.038997 ACTGGAGACAAAACACTATACTCC 57.961 41.667 0.00 0.00 42.06 3.85
4733 5159 7.656137 TGAAACTGGAGACAAAACACTATACTC 59.344 37.037 0.00 0.00 42.06 2.59
4734 5160 7.506114 TGAAACTGGAGACAAAACACTATACT 58.494 34.615 0.00 0.00 42.06 2.12
4735 5161 7.724305 TGAAACTGGAGACAAAACACTATAC 57.276 36.000 0.00 0.00 42.06 1.47
4736 5162 8.154203 TCATGAAACTGGAGACAAAACACTATA 58.846 33.333 0.00 0.00 42.06 1.31
4737 5163 6.998074 TCATGAAACTGGAGACAAAACACTAT 59.002 34.615 0.00 0.00 42.06 2.12
4789 5215 2.812358 ACAATACTCGCAGTCACACA 57.188 45.000 0.00 0.00 0.00 3.72
5000 5428 8.677148 AGACAAGTTACATTGTGTACAGATTT 57.323 30.769 0.00 0.00 43.32 2.17
5083 5540 6.772716 ACATCTTACTCTTCTGCCTTCAAAAA 59.227 34.615 0.00 0.00 0.00 1.94
5084 5541 6.299141 ACATCTTACTCTTCTGCCTTCAAAA 58.701 36.000 0.00 0.00 0.00 2.44
5085 5542 5.869579 ACATCTTACTCTTCTGCCTTCAAA 58.130 37.500 0.00 0.00 0.00 2.69
5086 5543 5.489792 ACATCTTACTCTTCTGCCTTCAA 57.510 39.130 0.00 0.00 0.00 2.69
5087 5544 5.012046 TCAACATCTTACTCTTCTGCCTTCA 59.988 40.000 0.00 0.00 0.00 3.02
5088 5545 5.482908 TCAACATCTTACTCTTCTGCCTTC 58.517 41.667 0.00 0.00 0.00 3.46
5089 5546 5.489792 TCAACATCTTACTCTTCTGCCTT 57.510 39.130 0.00 0.00 0.00 4.35
5090 5547 5.247110 TCTTCAACATCTTACTCTTCTGCCT 59.753 40.000 0.00 0.00 0.00 4.75
5091 5548 5.482908 TCTTCAACATCTTACTCTTCTGCC 58.517 41.667 0.00 0.00 0.00 4.85
5092 5549 7.426929 TTTCTTCAACATCTTACTCTTCTGC 57.573 36.000 0.00 0.00 0.00 4.26
5100 5557 9.124807 CGGGTTTTAATTTCTTCAACATCTTAC 57.875 33.333 0.00 0.00 0.00 2.34
5101 5558 9.069082 TCGGGTTTTAATTTCTTCAACATCTTA 57.931 29.630 0.00 0.00 0.00 2.10
5102 5559 7.947282 TCGGGTTTTAATTTCTTCAACATCTT 58.053 30.769 0.00 0.00 0.00 2.40
5103 5560 7.519032 TCGGGTTTTAATTTCTTCAACATCT 57.481 32.000 0.00 0.00 0.00 2.90
5104 5561 7.812669 ACATCGGGTTTTAATTTCTTCAACATC 59.187 33.333 0.00 0.00 0.00 3.06
5105 5562 7.666623 ACATCGGGTTTTAATTTCTTCAACAT 58.333 30.769 0.00 0.00 0.00 2.71
5106 5563 7.045126 ACATCGGGTTTTAATTTCTTCAACA 57.955 32.000 0.00 0.00 0.00 3.33
5109 5566 9.675464 AGTATACATCGGGTTTTAATTTCTTCA 57.325 29.630 5.50 0.00 0.00 3.02
5117 5574 6.174760 AGCACAAGTATACATCGGGTTTTAA 58.825 36.000 5.50 0.00 0.00 1.52
5122 5579 4.404715 AGTTAGCACAAGTATACATCGGGT 59.595 41.667 5.50 0.58 0.00 5.28
5166 5623 1.398692 TCAGCACAAAAGGGAACACC 58.601 50.000 0.00 0.00 40.67 4.16
5167 5624 2.362077 ACATCAGCACAAAAGGGAACAC 59.638 45.455 0.00 0.00 0.00 3.32
5168 5625 2.361757 CACATCAGCACAAAAGGGAACA 59.638 45.455 0.00 0.00 0.00 3.18
5169 5626 2.863704 GCACATCAGCACAAAAGGGAAC 60.864 50.000 0.00 0.00 0.00 3.62
5170 5627 1.340889 GCACATCAGCACAAAAGGGAA 59.659 47.619 0.00 0.00 0.00 3.97
5171 5628 0.961019 GCACATCAGCACAAAAGGGA 59.039 50.000 0.00 0.00 0.00 4.20
5172 5629 0.963962 AGCACATCAGCACAAAAGGG 59.036 50.000 0.00 0.00 36.85 3.95
5194 5651 9.376075 TCAGAATTAGAAGAAACAGCTCATAAG 57.624 33.333 0.00 0.00 0.00 1.73
5214 5671 8.682936 AACAAAGTAGTCAAAGACATCAGAAT 57.317 30.769 0.00 0.00 34.60 2.40
5310 5767 2.040947 TGTATCATGGTTGTGGGCTTCA 59.959 45.455 0.00 0.00 0.00 3.02
5529 5986 3.005050 CAGATGTCATGTTGCCAGTTTGT 59.995 43.478 0.00 0.00 0.00 2.83
5597 6054 2.634815 ATGAGGAATGGCTGCTGTAG 57.365 50.000 0.00 0.00 0.00 2.74
5633 6090 6.982724 AGGAAAAATCTTTGAACTTTCTGCAG 59.017 34.615 7.63 7.63 0.00 4.41
5683 6140 6.157645 ACATTTGATGATAGAGAGGAACTGGT 59.842 38.462 0.00 0.00 41.55 4.00
5802 6259 7.276658 TCAAACCTTGACATGAACTACAACTA 58.723 34.615 0.00 0.00 34.08 2.24
5893 6352 5.245531 TCAAACTATTCAACAGGTAGGCAG 58.754 41.667 0.00 0.00 0.00 4.85
5927 6386 6.456501 CAACTAGTGGTATAAGCTGGTATCC 58.543 44.000 0.00 0.00 0.00 2.59
5966 6425 9.268268 TCACGATTTTATGTCATACTTAATCCC 57.732 33.333 0.00 0.00 0.00 3.85
5985 6445 4.512944 CCAGTGCTATGCTAAATCACGATT 59.487 41.667 0.00 0.00 33.28 3.34
5986 6446 4.060900 CCAGTGCTATGCTAAATCACGAT 58.939 43.478 0.00 0.00 33.28 3.73
5988 6448 3.198068 ACCAGTGCTATGCTAAATCACG 58.802 45.455 0.00 0.00 33.28 4.35
6073 6534 5.994668 TGTTACGTTACCGGGTCTTAAAATT 59.005 36.000 6.32 0.00 38.78 1.82
6074 6535 5.546526 TGTTACGTTACCGGGTCTTAAAAT 58.453 37.500 6.32 0.00 38.78 1.82
6161 6622 6.437477 ACACAATCTGAACTAGACTCCATGTA 59.563 38.462 0.00 0.00 38.49 2.29
6383 6850 7.707104 AGCTATTTTGTGATAAATGCTGTACC 58.293 34.615 0.00 0.00 34.09 3.34
6385 6852 8.955388 TGAAGCTATTTTGTGATAAATGCTGTA 58.045 29.630 0.00 0.00 34.81 2.74
6386 6853 7.756722 GTGAAGCTATTTTGTGATAAATGCTGT 59.243 33.333 0.00 0.00 34.81 4.40
6387 6854 7.756272 TGTGAAGCTATTTTGTGATAAATGCTG 59.244 33.333 0.00 0.00 34.81 4.41
6388 6855 7.829725 TGTGAAGCTATTTTGTGATAAATGCT 58.170 30.769 0.00 0.00 35.43 3.79
6454 6923 8.043113 TCATCAGCTCACTTACACAATATTTCT 58.957 33.333 0.00 0.00 0.00 2.52
6469 6938 8.774890 AGATAACATATCAATCATCAGCTCAC 57.225 34.615 0.67 0.00 0.00 3.51
6480 6949 7.442364 CGACACCCAAAGAGATAACATATCAAT 59.558 37.037 0.67 0.00 0.00 2.57
6492 6961 4.204012 ACAAAAATCGACACCCAAAGAGA 58.796 39.130 0.00 0.00 0.00 3.10
6610 7207 9.273016 GCAGGCATGAACTTATCTTTATACTAA 57.727 33.333 0.62 0.00 0.00 2.24
6725 7342 6.494666 TCTTATATTTGTGAACGGAGGGAT 57.505 37.500 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.