Multiple sequence alignment - TraesCS1B01G446800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G446800 | chr1B | 100.000 | 2911 | 0 | 0 | 1 | 2911 | 666822180 | 666825090 | 0.000000e+00 | 5376.0 |
1 | TraesCS1B01G446800 | chr1B | 80.749 | 374 | 48 | 16 | 887 | 1242 | 4624367 | 4624734 | 1.330000e-68 | 270.0 |
2 | TraesCS1B01G446800 | chr1B | 91.736 | 121 | 7 | 3 | 1156 | 1276 | 644448932 | 644449049 | 6.450000e-37 | 165.0 |
3 | TraesCS1B01G446800 | chr1B | 97.059 | 34 | 1 | 0 | 88 | 121 | 622608709 | 622608742 | 1.130000e-04 | 58.4 |
4 | TraesCS1B01G446800 | chr1D | 95.192 | 1248 | 47 | 8 | 896 | 2140 | 478816064 | 478817301 | 0.000000e+00 | 1960.0 |
5 | TraesCS1B01G446800 | chr1D | 85.923 | 753 | 48 | 20 | 123 | 847 | 478815335 | 478816057 | 0.000000e+00 | 750.0 |
6 | TraesCS1B01G446800 | chr1D | 89.731 | 409 | 28 | 5 | 2510 | 2911 | 478817660 | 478818061 | 7.200000e-141 | 510.0 |
7 | TraesCS1B01G446800 | chr1D | 84.689 | 209 | 16 | 11 | 2305 | 2507 | 478817364 | 478817562 | 8.230000e-46 | 195.0 |
8 | TraesCS1B01G446800 | chr1D | 100.000 | 32 | 0 | 0 | 88 | 119 | 219735109 | 219735078 | 3.130000e-05 | 60.2 |
9 | TraesCS1B01G446800 | chr1A | 95.868 | 484 | 18 | 2 | 1658 | 2140 | 574935361 | 574935843 | 0.000000e+00 | 782.0 |
10 | TraesCS1B01G446800 | chr1A | 85.000 | 660 | 63 | 14 | 872 | 1525 | 574934460 | 574935089 | 3.160000e-179 | 638.0 |
11 | TraesCS1B01G446800 | chr1A | 91.111 | 405 | 19 | 9 | 2510 | 2904 | 574936260 | 574936657 | 1.540000e-147 | 532.0 |
12 | TraesCS1B01G446800 | chr1A | 92.647 | 204 | 11 | 3 | 2305 | 2507 | 574935962 | 574936162 | 1.020000e-74 | 291.0 |
13 | TraesCS1B01G446800 | chr1A | 82.707 | 133 | 5 | 6 | 1526 | 1658 | 574935167 | 574935281 | 5.130000e-18 | 102.0 |
14 | TraesCS1B01G446800 | chr1A | 97.059 | 34 | 1 | 0 | 88 | 121 | 547344861 | 547344894 | 1.130000e-04 | 58.4 |
15 | TraesCS1B01G446800 | chr7B | 79.661 | 649 | 74 | 33 | 887 | 1516 | 3796640 | 3796031 | 5.800000e-112 | 414.0 |
16 | TraesCS1B01G446800 | chr7B | 80.396 | 505 | 55 | 20 | 1041 | 1525 | 19119420 | 19119900 | 7.720000e-91 | 344.0 |
17 | TraesCS1B01G446800 | chr7B | 81.081 | 370 | 44 | 18 | 887 | 1239 | 78570819 | 78571179 | 3.700000e-69 | 272.0 |
18 | TraesCS1B01G446800 | chr7B | 77.433 | 483 | 70 | 25 | 1625 | 2086 | 3795768 | 3795304 | 4.820000e-63 | 252.0 |
19 | TraesCS1B01G446800 | chr7B | 84.348 | 230 | 30 | 6 | 872 | 1099 | 19119197 | 19119422 | 1.360000e-53 | 220.0 |
20 | TraesCS1B01G446800 | chr7B | 100.000 | 52 | 0 | 0 | 1 | 52 | 174744127 | 174744178 | 2.390000e-16 | 97.1 |
21 | TraesCS1B01G446800 | chr7D | 79.904 | 627 | 71 | 27 | 922 | 1525 | 63437187 | 63436593 | 2.700000e-110 | 409.0 |
22 | TraesCS1B01G446800 | chr7D | 76.832 | 423 | 50 | 25 | 1693 | 2094 | 63436254 | 63435859 | 8.230000e-46 | 195.0 |
23 | TraesCS1B01G446800 | chr7D | 97.500 | 40 | 0 | 1 | 88 | 126 | 139094253 | 139094214 | 1.870000e-07 | 67.6 |
24 | TraesCS1B01G446800 | chr4A | 79.500 | 600 | 79 | 23 | 934 | 1510 | 591505886 | 591505308 | 1.270000e-103 | 387.0 |
25 | TraesCS1B01G446800 | chr4A | 79.534 | 601 | 77 | 24 | 934 | 1510 | 592538005 | 592538583 | 1.270000e-103 | 387.0 |
26 | TraesCS1B01G446800 | chr4A | 95.789 | 95 | 4 | 0 | 2134 | 2228 | 684976198 | 684976104 | 1.400000e-33 | 154.0 |
27 | TraesCS1B01G446800 | chr4A | 90.083 | 121 | 9 | 3 | 1156 | 1276 | 742981383 | 742981500 | 1.400000e-33 | 154.0 |
28 | TraesCS1B01G446800 | chr4B | 90.943 | 265 | 16 | 4 | 2635 | 2898 | 546685106 | 546685363 | 1.660000e-92 | 350.0 |
29 | TraesCS1B01G446800 | chr4B | 100.000 | 52 | 0 | 0 | 1 | 52 | 1748712 | 1748661 | 2.390000e-16 | 97.1 |
30 | TraesCS1B01G446800 | chr4B | 100.000 | 52 | 0 | 0 | 1 | 52 | 584953082 | 584953031 | 2.390000e-16 | 97.1 |
31 | TraesCS1B01G446800 | chr4B | 100.000 | 34 | 0 | 0 | 88 | 121 | 665982630 | 665982597 | 2.420000e-06 | 63.9 |
32 | TraesCS1B01G446800 | chr7A | 78.063 | 506 | 66 | 29 | 1041 | 1525 | 34140937 | 34140456 | 7.940000e-71 | 278.0 |
33 | TraesCS1B01G446800 | chr7A | 76.471 | 493 | 63 | 29 | 1625 | 2094 | 66228295 | 66227833 | 4.880000e-53 | 219.0 |
34 | TraesCS1B01G446800 | chr7A | 100.000 | 91 | 0 | 0 | 2135 | 2225 | 332924648 | 332924558 | 4.990000e-38 | 169.0 |
35 | TraesCS1B01G446800 | chr6B | 80.811 | 370 | 45 | 18 | 887 | 1239 | 51420126 | 51419766 | 1.720000e-67 | 267.0 |
36 | TraesCS1B01G446800 | chr6B | 98.889 | 90 | 1 | 0 | 2132 | 2221 | 231315830 | 231315741 | 8.350000e-36 | 161.0 |
37 | TraesCS1B01G446800 | chr6B | 95.789 | 95 | 4 | 0 | 2130 | 2224 | 476176018 | 476176112 | 1.400000e-33 | 154.0 |
38 | TraesCS1B01G446800 | chr6B | 100.000 | 52 | 0 | 0 | 1 | 52 | 470924013 | 470924064 | 2.390000e-16 | 97.1 |
39 | TraesCS1B01G446800 | chr6B | 97.059 | 34 | 1 | 0 | 88 | 121 | 462034253 | 462034286 | 1.130000e-04 | 58.4 |
40 | TraesCS1B01G446800 | chr3B | 80.707 | 368 | 49 | 14 | 887 | 1239 | 160126856 | 160126496 | 1.720000e-67 | 267.0 |
41 | TraesCS1B01G446800 | chr3B | 100.000 | 87 | 0 | 0 | 2137 | 2223 | 459409131 | 459409045 | 8.350000e-36 | 161.0 |
42 | TraesCS1B01G446800 | chr3B | 95.789 | 95 | 4 | 0 | 2132 | 2226 | 556644793 | 556644699 | 1.400000e-33 | 154.0 |
43 | TraesCS1B01G446800 | chr3B | 100.000 | 52 | 0 | 0 | 1 | 52 | 249987058 | 249987007 | 2.390000e-16 | 97.1 |
44 | TraesCS1B01G446800 | chr6D | 91.146 | 192 | 10 | 3 | 2707 | 2898 | 445175422 | 445175238 | 1.340000e-63 | 254.0 |
45 | TraesCS1B01G446800 | chr6D | 100.000 | 37 | 0 | 0 | 88 | 124 | 392512746 | 392512710 | 5.210000e-08 | 69.4 |
46 | TraesCS1B01G446800 | chr2D | 97.895 | 95 | 1 | 1 | 2129 | 2223 | 165009229 | 165009322 | 2.320000e-36 | 163.0 |
47 | TraesCS1B01G446800 | chr2D | 98.876 | 89 | 1 | 0 | 2135 | 2223 | 188886171 | 188886083 | 3.000000e-35 | 159.0 |
48 | TraesCS1B01G446800 | chr3D | 95.050 | 101 | 4 | 1 | 2124 | 2224 | 554346213 | 554346114 | 1.080000e-34 | 158.0 |
49 | TraesCS1B01G446800 | chr3D | 100.000 | 34 | 0 | 0 | 88 | 121 | 569545612 | 569545645 | 2.420000e-06 | 63.9 |
50 | TraesCS1B01G446800 | chr3D | 93.023 | 43 | 3 | 0 | 88 | 130 | 572461819 | 572461777 | 2.420000e-06 | 63.9 |
51 | TraesCS1B01G446800 | chr2B | 90.756 | 119 | 8 | 3 | 1156 | 1274 | 465798137 | 465798252 | 3.880000e-34 | 156.0 |
52 | TraesCS1B01G446800 | chr5D | 100.000 | 52 | 0 | 0 | 1 | 52 | 378335889 | 378335838 | 2.390000e-16 | 97.1 |
53 | TraesCS1B01G446800 | chr5B | 100.000 | 52 | 0 | 0 | 1 | 52 | 115658564 | 115658513 | 2.390000e-16 | 97.1 |
54 | TraesCS1B01G446800 | chr5B | 100.000 | 52 | 0 | 0 | 1 | 52 | 115659987 | 115659936 | 2.390000e-16 | 97.1 |
55 | TraesCS1B01G446800 | chr5B | 100.000 | 52 | 0 | 0 | 1 | 52 | 166318183 | 166318234 | 2.390000e-16 | 97.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G446800 | chr1B | 666822180 | 666825090 | 2910 | False | 5376.00 | 5376 | 100.00000 | 1 | 2911 | 1 | chr1B.!!$F4 | 2910 |
1 | TraesCS1B01G446800 | chr1D | 478815335 | 478818061 | 2726 | False | 853.75 | 1960 | 88.88375 | 123 | 2911 | 4 | chr1D.!!$F1 | 2788 |
2 | TraesCS1B01G446800 | chr1A | 574934460 | 574936657 | 2197 | False | 469.00 | 782 | 89.46660 | 872 | 2904 | 5 | chr1A.!!$F2 | 2032 |
3 | TraesCS1B01G446800 | chr7B | 3795304 | 3796640 | 1336 | True | 333.00 | 414 | 78.54700 | 887 | 2086 | 2 | chr7B.!!$R1 | 1199 |
4 | TraesCS1B01G446800 | chr7B | 19119197 | 19119900 | 703 | False | 282.00 | 344 | 82.37200 | 872 | 1525 | 2 | chr7B.!!$F3 | 653 |
5 | TraesCS1B01G446800 | chr7D | 63435859 | 63437187 | 1328 | True | 302.00 | 409 | 78.36800 | 922 | 2094 | 2 | chr7D.!!$R2 | 1172 |
6 | TraesCS1B01G446800 | chr4A | 591505308 | 591505886 | 578 | True | 387.00 | 387 | 79.50000 | 934 | 1510 | 1 | chr4A.!!$R1 | 576 |
7 | TraesCS1B01G446800 | chr4A | 592538005 | 592538583 | 578 | False | 387.00 | 387 | 79.53400 | 934 | 1510 | 1 | chr4A.!!$F1 | 576 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
552 | 578 | 0.109597 | CTGTCAAACCAATCGGCTGC | 60.11 | 55.0 | 0.0 | 0.0 | 34.57 | 5.25 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2365 | 2749 | 0.118346 | TCCCTGGGCTGGTAAGAGAA | 59.882 | 55.0 | 8.22 | 0.0 | 0.0 | 2.87 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 3.360340 | GCCTGCTGCGTGCTTCTT | 61.360 | 61.111 | 6.02 | 0.00 | 43.37 | 2.52 |
41 | 42 | 2.866028 | CCTGCTGCGTGCTTCTTC | 59.134 | 61.111 | 0.00 | 0.00 | 43.37 | 2.87 |
42 | 43 | 2.684843 | CCTGCTGCGTGCTTCTTCC | 61.685 | 63.158 | 0.00 | 0.00 | 43.37 | 3.46 |
43 | 44 | 1.670406 | CTGCTGCGTGCTTCTTCCT | 60.670 | 57.895 | 0.00 | 0.00 | 43.37 | 3.36 |
44 | 45 | 1.909141 | CTGCTGCGTGCTTCTTCCTG | 61.909 | 60.000 | 0.00 | 0.00 | 43.37 | 3.86 |
45 | 46 | 2.866028 | CTGCGTGCTTCTTCCTGC | 59.134 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
46 | 47 | 1.670406 | CTGCGTGCTTCTTCCTGCT | 60.670 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
47 | 48 | 1.909141 | CTGCGTGCTTCTTCCTGCTG | 61.909 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
48 | 49 | 2.866028 | CGTGCTTCTTCCTGCTGC | 59.134 | 61.111 | 0.00 | 0.00 | 0.00 | 5.25 |
49 | 50 | 1.670406 | CGTGCTTCTTCCTGCTGCT | 60.670 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
50 | 51 | 0.390340 | CGTGCTTCTTCCTGCTGCTA | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
51 | 52 | 1.741732 | CGTGCTTCTTCCTGCTGCTAT | 60.742 | 52.381 | 0.00 | 0.00 | 0.00 | 2.97 |
52 | 53 | 2.481969 | CGTGCTTCTTCCTGCTGCTATA | 60.482 | 50.000 | 0.00 | 0.00 | 0.00 | 1.31 |
53 | 54 | 3.737850 | GTGCTTCTTCCTGCTGCTATAT | 58.262 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
54 | 55 | 3.745458 | GTGCTTCTTCCTGCTGCTATATC | 59.255 | 47.826 | 0.00 | 0.00 | 0.00 | 1.63 |
55 | 56 | 3.389002 | TGCTTCTTCCTGCTGCTATATCA | 59.611 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
56 | 57 | 4.141642 | TGCTTCTTCCTGCTGCTATATCAA | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
57 | 58 | 4.818546 | GCTTCTTCCTGCTGCTATATCAAA | 59.181 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
58 | 59 | 5.472820 | GCTTCTTCCTGCTGCTATATCAAAT | 59.527 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
59 | 60 | 6.016443 | GCTTCTTCCTGCTGCTATATCAAATT | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
60 | 61 | 7.173907 | GCTTCTTCCTGCTGCTATATCAAATTA | 59.826 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
61 | 62 | 8.978874 | TTCTTCCTGCTGCTATATCAAATTAA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
62 | 63 | 8.978874 | TCTTCCTGCTGCTATATCAAATTAAA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
63 | 64 | 9.407380 | TCTTCCTGCTGCTATATCAAATTAAAA | 57.593 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
64 | 65 | 9.674824 | CTTCCTGCTGCTATATCAAATTAAAAG | 57.325 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
65 | 66 | 8.978874 | TCCTGCTGCTATATCAAATTAAAAGA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
66 | 67 | 9.407380 | TCCTGCTGCTATATCAAATTAAAAGAA | 57.593 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
86 | 87 | 9.883142 | AAAAGAATGAAAATTACCACTTGACAA | 57.117 | 25.926 | 0.00 | 0.00 | 0.00 | 3.18 |
87 | 88 | 9.533253 | AAAGAATGAAAATTACCACTTGACAAG | 57.467 | 29.630 | 13.77 | 13.77 | 0.00 | 3.16 |
88 | 89 | 8.463930 | AGAATGAAAATTACCACTTGACAAGA | 57.536 | 30.769 | 21.95 | 0.00 | 0.00 | 3.02 |
89 | 90 | 8.352942 | AGAATGAAAATTACCACTTGACAAGAC | 58.647 | 33.333 | 21.95 | 1.45 | 0.00 | 3.01 |
90 | 91 | 7.581213 | ATGAAAATTACCACTTGACAAGACA | 57.419 | 32.000 | 21.95 | 0.95 | 0.00 | 3.41 |
91 | 92 | 7.397892 | TGAAAATTACCACTTGACAAGACAA | 57.602 | 32.000 | 21.95 | 9.47 | 0.00 | 3.18 |
93 | 94 | 7.338196 | TGAAAATTACCACTTGACAAGACAAGA | 59.662 | 33.333 | 21.95 | 5.19 | 46.85 | 3.02 |
94 | 95 | 6.867662 | AATTACCACTTGACAAGACAAGAG | 57.132 | 37.500 | 21.95 | 10.07 | 46.85 | 2.85 |
95 | 96 | 3.914426 | ACCACTTGACAAGACAAGAGT | 57.086 | 42.857 | 21.95 | 11.25 | 46.85 | 3.24 |
96 | 97 | 3.535561 | ACCACTTGACAAGACAAGAGTG | 58.464 | 45.455 | 21.95 | 8.09 | 46.85 | 3.51 |
97 | 98 | 2.874701 | CCACTTGACAAGACAAGAGTGG | 59.125 | 50.000 | 21.95 | 13.29 | 46.85 | 4.00 |
98 | 99 | 3.535561 | CACTTGACAAGACAAGAGTGGT | 58.464 | 45.455 | 21.95 | 0.00 | 46.85 | 4.16 |
99 | 100 | 4.442893 | CCACTTGACAAGACAAGAGTGGTA | 60.443 | 45.833 | 21.95 | 0.00 | 46.85 | 3.25 |
100 | 101 | 5.116180 | CACTTGACAAGACAAGAGTGGTAA | 58.884 | 41.667 | 21.95 | 0.00 | 46.85 | 2.85 |
101 | 102 | 5.235186 | CACTTGACAAGACAAGAGTGGTAAG | 59.765 | 44.000 | 21.95 | 0.00 | 46.85 | 2.34 |
102 | 103 | 3.728845 | TGACAAGACAAGAGTGGTAAGC | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
103 | 104 | 3.388024 | TGACAAGACAAGAGTGGTAAGCT | 59.612 | 43.478 | 0.00 | 0.00 | 0.00 | 3.74 |
104 | 105 | 4.587262 | TGACAAGACAAGAGTGGTAAGCTA | 59.413 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
105 | 106 | 5.246203 | TGACAAGACAAGAGTGGTAAGCTAT | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 2.97 |
106 | 107 | 6.436218 | TGACAAGACAAGAGTGGTAAGCTATA | 59.564 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
107 | 108 | 7.124298 | TGACAAGACAAGAGTGGTAAGCTATAT | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
108 | 109 | 7.493367 | ACAAGACAAGAGTGGTAAGCTATATC | 58.507 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
109 | 110 | 7.124298 | ACAAGACAAGAGTGGTAAGCTATATCA | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
110 | 111 | 7.661536 | AGACAAGAGTGGTAAGCTATATCAA | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
111 | 112 | 8.079211 | AGACAAGAGTGGTAAGCTATATCAAA | 57.921 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
112 | 113 | 8.540388 | AGACAAGAGTGGTAAGCTATATCAAAA | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
113 | 114 | 9.162764 | GACAAGAGTGGTAAGCTATATCAAAAA | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
114 | 115 | 8.947115 | ACAAGAGTGGTAAGCTATATCAAAAAC | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
115 | 116 | 8.946085 | CAAGAGTGGTAAGCTATATCAAAAACA | 58.054 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
116 | 117 | 9.686683 | AAGAGTGGTAAGCTATATCAAAAACAT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
117 | 118 | 9.686683 | AGAGTGGTAAGCTATATCAAAAACATT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
118 | 119 | 9.722056 | GAGTGGTAAGCTATATCAAAAACATTG | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
119 | 120 | 9.461312 | AGTGGTAAGCTATATCAAAAACATTGA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
165 | 166 | 1.660242 | AAGGCCCCTTGATTTTGCAT | 58.340 | 45.000 | 0.00 | 0.00 | 34.60 | 3.96 |
172 | 173 | 4.370917 | CCCCTTGATTTTGCATATTTCGG | 58.629 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
173 | 174 | 4.141959 | CCCCTTGATTTTGCATATTTCGGT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
175 | 176 | 5.291614 | CCCTTGATTTTGCATATTTCGGTTG | 59.708 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
180 | 181 | 7.995289 | TGATTTTGCATATTTCGGTTGTAGAT | 58.005 | 30.769 | 0.00 | 0.00 | 0.00 | 1.98 |
202 | 204 | 5.833406 | TGCTCAAAGTGAGTTGAAATTGA | 57.167 | 34.783 | 7.08 | 0.00 | 45.94 | 2.57 |
208 | 210 | 8.410030 | TCAAAGTGAGTTGAAATTGAAACATG | 57.590 | 30.769 | 6.35 | 0.00 | 34.59 | 3.21 |
324 | 326 | 0.546747 | AGTCGATTCCCCACCTTCCA | 60.547 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
350 | 353 | 1.544151 | GTCCCTCCCCTTTCCCCTT | 60.544 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
365 | 368 | 2.003548 | CCTTCCCCTTCCCCTCCAG | 61.004 | 68.421 | 0.00 | 0.00 | 0.00 | 3.86 |
405 | 408 | 2.974698 | CCGCCGCCTGAATCCATC | 60.975 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
448 | 470 | 2.410053 | CGTTTCTCTTCTTCCTCGCAAG | 59.590 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
478 | 504 | 0.547954 | GGTCTCCTCCCTCCCTTTGT | 60.548 | 60.000 | 0.00 | 0.00 | 0.00 | 2.83 |
498 | 524 | 4.631131 | TGTGGTATGTATGTATGAGCAGC | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 5.25 |
519 | 545 | 0.389948 | AGCTAGGTTGTTCCTTCGCG | 60.390 | 55.000 | 0.00 | 0.00 | 45.67 | 5.87 |
551 | 577 | 1.466167 | CTCTGTCAAACCAATCGGCTG | 59.534 | 52.381 | 0.00 | 0.00 | 34.57 | 4.85 |
552 | 578 | 0.109597 | CTGTCAAACCAATCGGCTGC | 60.110 | 55.000 | 0.00 | 0.00 | 34.57 | 5.25 |
553 | 579 | 0.537143 | TGTCAAACCAATCGGCTGCT | 60.537 | 50.000 | 0.00 | 0.00 | 34.57 | 4.24 |
554 | 580 | 1.271108 | TGTCAAACCAATCGGCTGCTA | 60.271 | 47.619 | 0.00 | 0.00 | 34.57 | 3.49 |
555 | 581 | 1.398390 | GTCAAACCAATCGGCTGCTAG | 59.602 | 52.381 | 0.00 | 0.00 | 34.57 | 3.42 |
556 | 582 | 1.003118 | TCAAACCAATCGGCTGCTAGT | 59.997 | 47.619 | 0.00 | 0.00 | 34.57 | 2.57 |
593 | 619 | 0.704664 | GGGACCTTCCAATTCTGGGT | 59.295 | 55.000 | 0.00 | 0.00 | 43.71 | 4.51 |
602 | 628 | 3.387962 | TCCAATTCTGGGTAGATCTGCT | 58.612 | 45.455 | 10.82 | 0.00 | 43.71 | 4.24 |
610 | 636 | 1.751563 | GTAGATCTGCTCCCCCTGC | 59.248 | 63.158 | 5.18 | 0.00 | 0.00 | 4.85 |
611 | 637 | 1.050988 | GTAGATCTGCTCCCCCTGCA | 61.051 | 60.000 | 5.18 | 0.00 | 38.81 | 4.41 |
617 | 643 | 4.416738 | GCTCCCCCTGCAGTGTCC | 62.417 | 72.222 | 13.81 | 0.00 | 0.00 | 4.02 |
618 | 644 | 2.930019 | CTCCCCCTGCAGTGTCCA | 60.930 | 66.667 | 13.81 | 0.00 | 0.00 | 4.02 |
619 | 645 | 2.204136 | TCCCCCTGCAGTGTCCAT | 60.204 | 61.111 | 13.81 | 0.00 | 0.00 | 3.41 |
620 | 646 | 2.044650 | CCCCCTGCAGTGTCCATG | 60.045 | 66.667 | 13.81 | 0.00 | 0.00 | 3.66 |
621 | 647 | 2.044650 | CCCCTGCAGTGTCCATGG | 60.045 | 66.667 | 13.81 | 4.97 | 0.00 | 3.66 |
622 | 648 | 2.753043 | CCCTGCAGTGTCCATGGC | 60.753 | 66.667 | 13.81 | 2.72 | 0.00 | 4.40 |
623 | 649 | 3.129502 | CCTGCAGTGTCCATGGCG | 61.130 | 66.667 | 13.81 | 0.00 | 0.00 | 5.69 |
624 | 650 | 3.129502 | CTGCAGTGTCCATGGCGG | 61.130 | 66.667 | 6.96 | 0.00 | 0.00 | 6.13 |
627 | 653 | 3.129502 | CAGTGTCCATGGCGGCAG | 61.130 | 66.667 | 19.29 | 9.56 | 33.14 | 4.85 |
628 | 654 | 4.415150 | AGTGTCCATGGCGGCAGG | 62.415 | 66.667 | 19.29 | 18.40 | 33.14 | 4.85 |
645 | 671 | 2.511600 | GGCGTGTTCCTGGATCCG | 60.512 | 66.667 | 7.39 | 4.44 | 0.00 | 4.18 |
664 | 693 | 3.127548 | TCCGAGTTTGTGGATACGAGTAC | 59.872 | 47.826 | 0.00 | 0.00 | 42.51 | 2.73 |
684 | 713 | 2.061773 | CGATTGGTCTGCGGATGATAC | 58.938 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
703 | 732 | 5.350640 | TGATACGATCTATATCTTGCGTCGT | 59.649 | 40.000 | 12.53 | 0.00 | 42.55 | 4.34 |
726 | 755 | 9.119329 | TCGTTACAAATTTCGGTTGATTTTATG | 57.881 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
756 | 785 | 9.974980 | TTTATTAGTACAAGATGATGCGTGATA | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
760 | 789 | 3.801698 | ACAAGATGATGCGTGATAGCTT | 58.198 | 40.909 | 0.00 | 0.00 | 38.13 | 3.74 |
831 | 860 | 3.973206 | TGGATACCCTTGTGTGTACAG | 57.027 | 47.619 | 0.00 | 0.00 | 38.23 | 2.74 |
838 | 867 | 2.806244 | CCCTTGTGTGTACAGTTACTGC | 59.194 | 50.000 | 12.80 | 0.00 | 38.23 | 4.40 |
847 | 876 | 7.170828 | TGTGTGTACAGTTACTGCATCTTTTAG | 59.829 | 37.037 | 12.80 | 0.00 | 34.37 | 1.85 |
848 | 877 | 6.649141 | TGTGTACAGTTACTGCATCTTTTAGG | 59.351 | 38.462 | 12.80 | 0.00 | 34.37 | 2.69 |
849 | 878 | 6.649557 | GTGTACAGTTACTGCATCTTTTAGGT | 59.350 | 38.462 | 12.80 | 0.00 | 34.37 | 3.08 |
852 | 881 | 9.211485 | GTACAGTTACTGCATCTTTTAGGTTAA | 57.789 | 33.333 | 12.80 | 0.00 | 34.37 | 2.01 |
853 | 882 | 8.685838 | ACAGTTACTGCATCTTTTAGGTTAAA | 57.314 | 30.769 | 12.80 | 0.00 | 34.37 | 1.52 |
854 | 883 | 9.297037 | ACAGTTACTGCATCTTTTAGGTTAAAT | 57.703 | 29.630 | 12.80 | 0.00 | 34.37 | 1.40 |
876 | 905 | 8.894768 | AAATATACTCTGCACTTGGAGTATTC | 57.105 | 34.615 | 23.58 | 0.00 | 46.98 | 1.75 |
881 | 910 | 5.246203 | ACTCTGCACTTGGAGTATTCAGTAA | 59.754 | 40.000 | 4.62 | 0.00 | 40.49 | 2.24 |
900 | 929 | 5.971792 | CAGTAATGATTTCTTCGCGACTAGA | 59.028 | 40.000 | 9.15 | 7.51 | 0.00 | 2.43 |
902 | 931 | 7.168302 | CAGTAATGATTTCTTCGCGACTAGAAT | 59.832 | 37.037 | 20.59 | 13.24 | 31.00 | 2.40 |
903 | 932 | 8.350722 | AGTAATGATTTCTTCGCGACTAGAATA | 58.649 | 33.333 | 20.59 | 13.28 | 31.00 | 1.75 |
918 | 947 | 7.133513 | CGACTAGAATATCCAGTAGTGTGTTC | 58.866 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
997 | 1033 | 3.611970 | TGAAGTAAGGAGAGAGGTCGAG | 58.388 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1101 | 1193 | 2.045926 | AACCATGGGAGCAGCGTC | 60.046 | 61.111 | 18.09 | 0.00 | 0.00 | 5.19 |
1135 | 1227 | 7.707035 | GGATGTTAGTACTATCTTCACCTGTTG | 59.293 | 40.741 | 20.21 | 0.00 | 0.00 | 3.33 |
1289 | 1406 | 7.798516 | GCAAATGGTATGTATGAATTAGACACG | 59.201 | 37.037 | 0.00 | 0.00 | 32.53 | 4.49 |
1417 | 1538 | 6.814644 | TCTCAACCAAATGATTGATTGATTGC | 59.185 | 34.615 | 0.00 | 0.00 | 45.76 | 3.56 |
1607 | 1834 | 2.719739 | ACCTGCATTCATCAGAACTGG | 58.280 | 47.619 | 1.93 | 0.00 | 36.39 | 4.00 |
1621 | 1848 | 7.290948 | TCATCAGAACTGGACCTGTATGATAAT | 59.709 | 37.037 | 21.68 | 7.91 | 30.09 | 1.28 |
1622 | 1849 | 6.820335 | TCAGAACTGGACCTGTATGATAATG | 58.180 | 40.000 | 4.21 | 0.00 | 0.00 | 1.90 |
1623 | 1850 | 6.384015 | TCAGAACTGGACCTGTATGATAATGT | 59.616 | 38.462 | 4.21 | 0.00 | 0.00 | 2.71 |
1711 | 2034 | 9.862371 | TCTCAGAATTGTACTAATTCTCTGTTC | 57.138 | 33.333 | 20.81 | 3.71 | 43.08 | 3.18 |
1950 | 2296 | 4.256920 | ACTCTATGACCTCAATGTGTTGC | 58.743 | 43.478 | 0.00 | 0.00 | 35.26 | 4.17 |
1953 | 2299 | 0.953727 | TGACCTCAATGTGTTGCTGC | 59.046 | 50.000 | 0.00 | 0.00 | 35.26 | 5.25 |
2063 | 2410 | 6.033619 | GTGCTTAATACACGACCGATGATATC | 59.966 | 42.308 | 0.00 | 0.00 | 0.00 | 1.63 |
2129 | 2476 | 3.262405 | ACCTAATCTCGGTACCTGCAAAA | 59.738 | 43.478 | 10.90 | 0.00 | 31.69 | 2.44 |
2151 | 2498 | 6.564709 | AAAATTTGTACTCCCTCCGTAAAC | 57.435 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
2152 | 2499 | 4.895668 | ATTTGTACTCCCTCCGTAAACA | 57.104 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2153 | 2500 | 4.686191 | TTTGTACTCCCTCCGTAAACAA | 57.314 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2154 | 2501 | 4.686191 | TTGTACTCCCTCCGTAAACAAA | 57.314 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2155 | 2502 | 4.895668 | TGTACTCCCTCCGTAAACAAAT | 57.104 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
2156 | 2503 | 5.999205 | TGTACTCCCTCCGTAAACAAATA | 57.001 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2157 | 2504 | 6.549433 | TGTACTCCCTCCGTAAACAAATAT | 57.451 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
2158 | 2505 | 7.658525 | TGTACTCCCTCCGTAAACAAATATA | 57.341 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
2159 | 2506 | 8.076910 | TGTACTCCCTCCGTAAACAAATATAA | 57.923 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2160 | 2507 | 8.199449 | TGTACTCCCTCCGTAAACAAATATAAG | 58.801 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2161 | 2508 | 7.427989 | ACTCCCTCCGTAAACAAATATAAGA | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2162 | 2509 | 7.498443 | ACTCCCTCCGTAAACAAATATAAGAG | 58.502 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
2163 | 2510 | 6.285990 | TCCCTCCGTAAACAAATATAAGAGC | 58.714 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2164 | 2511 | 5.176958 | CCCTCCGTAAACAAATATAAGAGCG | 59.823 | 44.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2165 | 2512 | 5.751990 | CCTCCGTAAACAAATATAAGAGCGT | 59.248 | 40.000 | 0.00 | 0.00 | 0.00 | 5.07 |
2166 | 2513 | 6.257193 | CCTCCGTAAACAAATATAAGAGCGTT | 59.743 | 38.462 | 0.00 | 0.00 | 0.00 | 4.84 |
2167 | 2514 | 7.201582 | CCTCCGTAAACAAATATAAGAGCGTTT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
2168 | 2515 | 8.700722 | TCCGTAAACAAATATAAGAGCGTTTA | 57.299 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
2169 | 2516 | 8.810427 | TCCGTAAACAAATATAAGAGCGTTTAG | 58.190 | 33.333 | 0.00 | 0.00 | 31.53 | 1.85 |
2170 | 2517 | 8.810427 | CCGTAAACAAATATAAGAGCGTTTAGA | 58.190 | 33.333 | 0.00 | 0.00 | 31.53 | 2.10 |
2175 | 2522 | 9.601217 | AACAAATATAAGAGCGTTTAGATCACT | 57.399 | 29.630 | 0.00 | 0.00 | 37.82 | 3.41 |
2182 | 2529 | 9.953697 | ATAAGAGCGTTTAGATCACTACTTTAG | 57.046 | 33.333 | 0.00 | 0.00 | 37.82 | 1.85 |
2183 | 2530 | 7.393841 | AGAGCGTTTAGATCACTACTTTAGT | 57.606 | 36.000 | 0.00 | 0.00 | 37.82 | 2.24 |
2184 | 2531 | 8.503458 | AGAGCGTTTAGATCACTACTTTAGTA | 57.497 | 34.615 | 0.00 | 0.00 | 37.82 | 1.82 |
2185 | 2532 | 8.954350 | AGAGCGTTTAGATCACTACTTTAGTAA | 58.046 | 33.333 | 0.00 | 0.00 | 37.82 | 2.24 |
2186 | 2533 | 9.733219 | GAGCGTTTAGATCACTACTTTAGTAAT | 57.267 | 33.333 | 0.00 | 0.00 | 37.23 | 1.89 |
2187 | 2534 | 9.733219 | AGCGTTTAGATCACTACTTTAGTAATC | 57.267 | 33.333 | 0.00 | 0.00 | 37.23 | 1.75 |
2188 | 2535 | 9.733219 | GCGTTTAGATCACTACTTTAGTAATCT | 57.267 | 33.333 | 4.72 | 4.72 | 37.23 | 2.40 |
2217 | 2564 | 8.777578 | TGCTCTTATATTAGTTTACAGAGGGA | 57.222 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
2232 | 2579 | 2.763448 | AGAGGGAGTACTTGAGACATGC | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2233 | 2580 | 1.834263 | AGGGAGTACTTGAGACATGCC | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2239 | 2586 | 1.238439 | ACTTGAGACATGCCGTTTGG | 58.762 | 50.000 | 0.00 | 0.00 | 38.77 | 3.28 |
2244 | 2591 | 1.002624 | GACATGCCGTTTGGGAGGA | 60.003 | 57.895 | 0.00 | 0.00 | 40.16 | 3.71 |
2257 | 2604 | 2.054021 | TGGGAGGATGTTCTGTGAACA | 58.946 | 47.619 | 14.29 | 14.29 | 34.31 | 3.18 |
2260 | 2607 | 3.496870 | GGGAGGATGTTCTGTGAACAGTT | 60.497 | 47.826 | 16.50 | 3.37 | 44.12 | 3.16 |
2275 | 2622 | 9.651718 | CTGTGAACAGTTAAGTCAAGAATTTAC | 57.348 | 33.333 | 2.14 | 0.00 | 39.09 | 2.01 |
2303 | 2650 | 3.324268 | TGGTACGGTGGTTGTTTGATAGA | 59.676 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2322 | 2706 | 3.589988 | AGACCATGAACTGTGAATCGTC | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
2350 | 2734 | 2.806434 | TGCTACTTTTGGGATGTGCAT | 58.194 | 42.857 | 0.00 | 0.00 | 0.00 | 3.96 |
2387 | 2773 | 1.198759 | TCTTACCAGCCCAGGGACAC | 61.199 | 60.000 | 10.89 | 0.00 | 0.00 | 3.67 |
2388 | 2774 | 1.151899 | TTACCAGCCCAGGGACACT | 60.152 | 57.895 | 10.89 | 0.00 | 0.00 | 3.55 |
2389 | 2775 | 0.117541 | TTACCAGCCCAGGGACACTA | 59.882 | 55.000 | 10.89 | 0.00 | 0.00 | 2.74 |
2453 | 2841 | 7.656707 | AACTTCGTAAACATGTATAAACCGT | 57.343 | 32.000 | 0.00 | 0.00 | 0.00 | 4.83 |
2507 | 2897 | 7.956943 | AGCAATTTTTCAAAGAAAAACAAGACG | 59.043 | 29.630 | 16.97 | 6.38 | 32.75 | 4.18 |
2523 | 3008 | 1.195448 | AGACGATGCTTTCAAGTTGCG | 59.805 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
2583 | 3068 | 6.436261 | CAGACTTGATTTTATGCTATGCTGG | 58.564 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2633 | 3118 | 0.251165 | TTGCCTTGTAAGGGTCCTGC | 60.251 | 55.000 | 12.32 | 0.00 | 46.56 | 4.85 |
2706 | 3193 | 0.325933 | TGCAGCCACTCTAACAGCAT | 59.674 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2727 | 3214 | 1.615392 | GCTGCACTTGTTTTCCAGGAT | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
2728 | 3215 | 2.608752 | GCTGCACTTGTTTTCCAGGATG | 60.609 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2784 | 3271 | 1.023513 | GGTGTGCAGCAGAGCTTAGG | 61.024 | 60.000 | 14.27 | 0.00 | 36.40 | 2.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 2.866028 | CAGGAAGAAGCACGCAGC | 59.134 | 61.111 | 0.00 | 0.00 | 46.19 | 5.25 |
28 | 29 | 1.670406 | AGCAGGAAGAAGCACGCAG | 60.670 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
29 | 30 | 1.962822 | CAGCAGGAAGAAGCACGCA | 60.963 | 57.895 | 0.00 | 0.00 | 0.00 | 5.24 |
30 | 31 | 2.866028 | CAGCAGGAAGAAGCACGC | 59.134 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
31 | 32 | 0.390340 | TAGCAGCAGGAAGAAGCACG | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
32 | 33 | 2.035530 | ATAGCAGCAGGAAGAAGCAC | 57.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
33 | 34 | 3.389002 | TGATATAGCAGCAGGAAGAAGCA | 59.611 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
34 | 35 | 4.000331 | TGATATAGCAGCAGGAAGAAGC | 58.000 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
35 | 36 | 7.507733 | AATTTGATATAGCAGCAGGAAGAAG | 57.492 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
36 | 37 | 8.978874 | TTAATTTGATATAGCAGCAGGAAGAA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
37 | 38 | 8.978874 | TTTAATTTGATATAGCAGCAGGAAGA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
38 | 39 | 9.674824 | CTTTTAATTTGATATAGCAGCAGGAAG | 57.325 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
39 | 40 | 9.407380 | TCTTTTAATTTGATATAGCAGCAGGAA | 57.593 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
40 | 41 | 8.978874 | TCTTTTAATTTGATATAGCAGCAGGA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 3.86 |
60 | 61 | 9.883142 | TTGTCAAGTGGTAATTTTCATTCTTTT | 57.117 | 25.926 | 0.00 | 0.00 | 0.00 | 2.27 |
61 | 62 | 9.533253 | CTTGTCAAGTGGTAATTTTCATTCTTT | 57.467 | 29.630 | 4.27 | 0.00 | 0.00 | 2.52 |
62 | 63 | 8.912988 | TCTTGTCAAGTGGTAATTTTCATTCTT | 58.087 | 29.630 | 12.30 | 0.00 | 0.00 | 2.52 |
63 | 64 | 8.352942 | GTCTTGTCAAGTGGTAATTTTCATTCT | 58.647 | 33.333 | 12.30 | 0.00 | 0.00 | 2.40 |
64 | 65 | 8.134895 | TGTCTTGTCAAGTGGTAATTTTCATTC | 58.865 | 33.333 | 12.30 | 0.00 | 0.00 | 2.67 |
65 | 66 | 8.006298 | TGTCTTGTCAAGTGGTAATTTTCATT | 57.994 | 30.769 | 12.30 | 0.00 | 0.00 | 2.57 |
66 | 67 | 7.581213 | TGTCTTGTCAAGTGGTAATTTTCAT | 57.419 | 32.000 | 12.30 | 0.00 | 0.00 | 2.57 |
67 | 68 | 7.338196 | TCTTGTCTTGTCAAGTGGTAATTTTCA | 59.662 | 33.333 | 12.30 | 0.00 | 43.44 | 2.69 |
68 | 69 | 7.703328 | TCTTGTCTTGTCAAGTGGTAATTTTC | 58.297 | 34.615 | 12.30 | 0.00 | 43.44 | 2.29 |
69 | 70 | 7.339466 | ACTCTTGTCTTGTCAAGTGGTAATTTT | 59.661 | 33.333 | 12.30 | 0.00 | 43.44 | 1.82 |
70 | 71 | 6.828785 | ACTCTTGTCTTGTCAAGTGGTAATTT | 59.171 | 34.615 | 12.30 | 0.00 | 43.44 | 1.82 |
71 | 72 | 6.260936 | CACTCTTGTCTTGTCAAGTGGTAATT | 59.739 | 38.462 | 12.30 | 0.00 | 43.44 | 1.40 |
72 | 73 | 5.760253 | CACTCTTGTCTTGTCAAGTGGTAAT | 59.240 | 40.000 | 12.30 | 0.00 | 43.44 | 1.89 |
73 | 74 | 5.116180 | CACTCTTGTCTTGTCAAGTGGTAA | 58.884 | 41.667 | 12.30 | 3.68 | 43.44 | 2.85 |
74 | 75 | 4.442893 | CCACTCTTGTCTTGTCAAGTGGTA | 60.443 | 45.833 | 12.30 | 0.00 | 43.44 | 3.25 |
75 | 76 | 3.535561 | CACTCTTGTCTTGTCAAGTGGT | 58.464 | 45.455 | 12.30 | 1.93 | 43.44 | 4.16 |
76 | 77 | 2.874701 | CCACTCTTGTCTTGTCAAGTGG | 59.125 | 50.000 | 12.30 | 7.72 | 43.44 | 4.00 |
77 | 78 | 3.535561 | ACCACTCTTGTCTTGTCAAGTG | 58.464 | 45.455 | 12.30 | 2.36 | 43.44 | 3.16 |
78 | 79 | 3.914426 | ACCACTCTTGTCTTGTCAAGT | 57.086 | 42.857 | 12.30 | 0.00 | 43.44 | 3.16 |
79 | 80 | 4.212214 | GCTTACCACTCTTGTCTTGTCAAG | 59.788 | 45.833 | 6.21 | 6.21 | 44.08 | 3.02 |
80 | 81 | 4.127171 | GCTTACCACTCTTGTCTTGTCAA | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
81 | 82 | 3.388024 | AGCTTACCACTCTTGTCTTGTCA | 59.612 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
82 | 83 | 3.996480 | AGCTTACCACTCTTGTCTTGTC | 58.004 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
83 | 84 | 5.746990 | ATAGCTTACCACTCTTGTCTTGT | 57.253 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
84 | 85 | 7.492524 | TGATATAGCTTACCACTCTTGTCTTG | 58.507 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
85 | 86 | 7.661536 | TGATATAGCTTACCACTCTTGTCTT | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
86 | 87 | 7.661536 | TTGATATAGCTTACCACTCTTGTCT | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
87 | 88 | 8.718102 | TTTTGATATAGCTTACCACTCTTGTC | 57.282 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
88 | 89 | 8.947115 | GTTTTTGATATAGCTTACCACTCTTGT | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
89 | 90 | 8.946085 | TGTTTTTGATATAGCTTACCACTCTTG | 58.054 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
90 | 91 | 9.686683 | ATGTTTTTGATATAGCTTACCACTCTT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
91 | 92 | 9.686683 | AATGTTTTTGATATAGCTTACCACTCT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
92 | 93 | 9.722056 | CAATGTTTTTGATATAGCTTACCACTC | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
93 | 94 | 9.461312 | TCAATGTTTTTGATATAGCTTACCACT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
121 | 122 | 3.996363 | GCTCCGCATTTTCCATTCTTTTT | 59.004 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
124 | 125 | 1.478105 | GGCTCCGCATTTTCCATTCTT | 59.522 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
165 | 166 | 6.092122 | CACTTTGAGCATCTACAACCGAAATA | 59.908 | 38.462 | 0.00 | 0.00 | 34.92 | 1.40 |
220 | 222 | 4.027556 | CGCAATCGTCGTTGTTTATCAAAC | 59.972 | 41.667 | 8.60 | 0.00 | 41.73 | 2.93 |
301 | 303 | 1.497161 | AGGTGGGGAATCGACTAAGG | 58.503 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
302 | 304 | 2.158943 | GGAAGGTGGGGAATCGACTAAG | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.18 |
305 | 307 | 0.546747 | TGGAAGGTGGGGAATCGACT | 60.547 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
424 | 446 | 1.351153 | GAGGAAGAAGAGAAACGGCG | 58.649 | 55.000 | 4.80 | 4.80 | 0.00 | 6.46 |
433 | 455 | 0.036952 | CCTGCTTGCGAGGAAGAAGA | 60.037 | 55.000 | 13.12 | 0.00 | 30.78 | 2.87 |
448 | 470 | 1.893919 | GAGGAGACCTGGTGACCTGC | 61.894 | 65.000 | 21.13 | 10.85 | 31.76 | 4.85 |
478 | 504 | 5.336770 | GCTAGCTGCTCATACATACATACCA | 60.337 | 44.000 | 4.91 | 0.00 | 38.95 | 3.25 |
512 | 538 | 1.552348 | GAGAATCGATGCCGCGAAGG | 61.552 | 60.000 | 8.23 | 0.00 | 44.22 | 3.46 |
519 | 545 | 2.879002 | TGACAGAGAGAATCGATGCC | 57.121 | 50.000 | 0.00 | 0.00 | 42.67 | 4.40 |
551 | 577 | 0.960286 | CCTACCCTAGCGGAACTAGC | 59.040 | 60.000 | 4.45 | 0.00 | 46.17 | 3.42 |
552 | 578 | 1.144503 | TCCCTACCCTAGCGGAACTAG | 59.855 | 57.143 | 4.45 | 0.00 | 46.95 | 2.57 |
553 | 579 | 1.133668 | GTCCCTACCCTAGCGGAACTA | 60.134 | 57.143 | 4.45 | 0.00 | 34.64 | 2.24 |
554 | 580 | 0.396835 | GTCCCTACCCTAGCGGAACT | 60.397 | 60.000 | 4.45 | 0.00 | 34.64 | 3.01 |
555 | 581 | 1.732417 | CGTCCCTACCCTAGCGGAAC | 61.732 | 65.000 | 4.45 | 0.00 | 34.64 | 3.62 |
556 | 582 | 1.454479 | CGTCCCTACCCTAGCGGAA | 60.454 | 63.158 | 4.45 | 0.00 | 34.64 | 4.30 |
593 | 619 | 1.314518 | TGCAGGGGGAGCAGATCTA | 59.685 | 57.895 | 0.00 | 0.00 | 37.02 | 1.98 |
602 | 628 | 2.204136 | ATGGACACTGCAGGGGGA | 60.204 | 61.111 | 22.46 | 3.30 | 0.00 | 4.81 |
610 | 636 | 3.129502 | CTGCCGCCATGGACACTG | 61.130 | 66.667 | 18.40 | 3.34 | 42.00 | 3.66 |
611 | 637 | 4.415150 | CCTGCCGCCATGGACACT | 62.415 | 66.667 | 18.40 | 0.00 | 42.00 | 3.55 |
626 | 652 | 2.670148 | GGATCCAGGAACACGCCCT | 61.670 | 63.158 | 6.95 | 0.00 | 0.00 | 5.19 |
627 | 653 | 2.124695 | GGATCCAGGAACACGCCC | 60.125 | 66.667 | 6.95 | 0.00 | 0.00 | 6.13 |
628 | 654 | 2.511600 | CGGATCCAGGAACACGCC | 60.512 | 66.667 | 13.41 | 0.00 | 0.00 | 5.68 |
645 | 671 | 4.346734 | TCGTACTCGTATCCACAAACTC | 57.653 | 45.455 | 0.00 | 0.00 | 38.33 | 3.01 |
664 | 693 | 2.061773 | GTATCATCCGCAGACCAATCG | 58.938 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
684 | 713 | 5.379827 | TGTAACGACGCAAGATATAGATCG | 58.620 | 41.667 | 0.00 | 0.00 | 43.62 | 3.69 |
728 | 757 | 9.157104 | TCACGCATCATCTTGTACTAATAAAAA | 57.843 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
729 | 758 | 8.710835 | TCACGCATCATCTTGTACTAATAAAA | 57.289 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
730 | 759 | 8.887036 | ATCACGCATCATCTTGTACTAATAAA | 57.113 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
731 | 760 | 9.626045 | CTATCACGCATCATCTTGTACTAATAA | 57.374 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
732 | 761 | 7.755373 | GCTATCACGCATCATCTTGTACTAATA | 59.245 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
733 | 762 | 6.587990 | GCTATCACGCATCATCTTGTACTAAT | 59.412 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
734 | 763 | 5.920840 | GCTATCACGCATCATCTTGTACTAA | 59.079 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
735 | 764 | 5.241728 | AGCTATCACGCATCATCTTGTACTA | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
736 | 765 | 4.038522 | AGCTATCACGCATCATCTTGTACT | 59.961 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
737 | 766 | 4.302455 | AGCTATCACGCATCATCTTGTAC | 58.698 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
738 | 767 | 4.590850 | AGCTATCACGCATCATCTTGTA | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
739 | 768 | 3.465742 | AGCTATCACGCATCATCTTGT | 57.534 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
740 | 769 | 3.805971 | TCAAGCTATCACGCATCATCTTG | 59.194 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
741 | 770 | 4.063998 | TCAAGCTATCACGCATCATCTT | 57.936 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
742 | 771 | 3.740631 | TCAAGCTATCACGCATCATCT | 57.259 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
799 | 828 | 2.766828 | AGGGTATCCAAGTGCAGAGTAC | 59.233 | 50.000 | 0.00 | 0.00 | 34.83 | 2.73 |
810 | 839 | 3.649023 | ACTGTACACACAAGGGTATCCAA | 59.351 | 43.478 | 0.00 | 0.00 | 33.22 | 3.53 |
847 | 876 | 7.048512 | ACTCCAAGTGCAGAGTATATTTAACC | 58.951 | 38.462 | 4.62 | 0.00 | 41.51 | 2.85 |
856 | 885 | 4.772624 | ACTGAATACTCCAAGTGCAGAGTA | 59.227 | 41.667 | 13.95 | 13.95 | 46.61 | 2.59 |
857 | 886 | 3.580458 | ACTGAATACTCCAAGTGCAGAGT | 59.420 | 43.478 | 10.74 | 10.74 | 45.20 | 3.24 |
858 | 887 | 4.199432 | ACTGAATACTCCAAGTGCAGAG | 57.801 | 45.455 | 0.00 | 0.00 | 36.16 | 3.35 |
859 | 888 | 5.738619 | TTACTGAATACTCCAAGTGCAGA | 57.261 | 39.130 | 0.00 | 0.00 | 31.88 | 4.26 |
860 | 889 | 6.108687 | TCATTACTGAATACTCCAAGTGCAG | 58.891 | 40.000 | 0.00 | 0.00 | 32.91 | 4.41 |
861 | 890 | 6.048732 | TCATTACTGAATACTCCAAGTGCA | 57.951 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
862 | 891 | 7.559590 | AATCATTACTGAATACTCCAAGTGC | 57.440 | 36.000 | 0.00 | 0.00 | 34.37 | 4.40 |
863 | 892 | 9.388506 | AGAAATCATTACTGAATACTCCAAGTG | 57.611 | 33.333 | 0.00 | 0.00 | 34.37 | 3.16 |
867 | 896 | 7.224753 | GCGAAGAAATCATTACTGAATACTCCA | 59.775 | 37.037 | 0.00 | 0.00 | 34.37 | 3.86 |
876 | 905 | 5.971792 | TCTAGTCGCGAAGAAATCATTACTG | 59.028 | 40.000 | 12.06 | 0.00 | 0.00 | 2.74 |
881 | 910 | 6.809196 | GGATATTCTAGTCGCGAAGAAATCAT | 59.191 | 38.462 | 22.96 | 16.81 | 35.47 | 2.45 |
900 | 929 | 8.540507 | AGACATAGAACACACTACTGGATATT | 57.459 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
902 | 931 | 7.956328 | AAGACATAGAACACACTACTGGATA | 57.044 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
903 | 932 | 6.859112 | AAGACATAGAACACACTACTGGAT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
997 | 1033 | 1.228510 | CCTTCCTCTTCCCCATGGC | 59.771 | 63.158 | 6.09 | 0.00 | 0.00 | 4.40 |
1101 | 1193 | 3.093717 | AGTACTAACATCCGGCATTCG | 57.906 | 47.619 | 0.00 | 0.00 | 38.88 | 3.34 |
1135 | 1227 | 7.285401 | TGGATAGCCATTCCAAATTAAGAAGAC | 59.715 | 37.037 | 0.00 | 0.00 | 40.29 | 3.01 |
1289 | 1406 | 2.550487 | TGGTACAATCTGCGGTTGC | 58.450 | 52.632 | 0.00 | 0.00 | 37.11 | 4.17 |
1358 | 1476 | 4.074259 | CAATGAGATGTCTGGTGTGGAAA | 58.926 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
1417 | 1538 | 3.679389 | ACCATGTTCCTAGAGTTGCAAG | 58.321 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
1711 | 2034 | 1.962822 | TCAGCGCTGCACCAAAGAG | 60.963 | 57.895 | 32.44 | 5.01 | 0.00 | 2.85 |
1953 | 2299 | 1.086696 | CTGACGGTGGCAGTAAATGG | 58.913 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2063 | 2410 | 6.424509 | TCAAGGTTTACAAATACAGGTACACG | 59.575 | 38.462 | 0.00 | 0.00 | 0.00 | 4.49 |
2129 | 2476 | 5.623169 | TGTTTACGGAGGGAGTACAAATTT | 58.377 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2133 | 2480 | 4.686191 | TTTGTTTACGGAGGGAGTACAA | 57.314 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
2135 | 2482 | 8.416329 | TCTTATATTTGTTTACGGAGGGAGTAC | 58.584 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2136 | 2483 | 8.537728 | TCTTATATTTGTTTACGGAGGGAGTA | 57.462 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2137 | 2484 | 7.427989 | TCTTATATTTGTTTACGGAGGGAGT | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2138 | 2485 | 6.424207 | GCTCTTATATTTGTTTACGGAGGGAG | 59.576 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2139 | 2486 | 6.285990 | GCTCTTATATTTGTTTACGGAGGGA | 58.714 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2140 | 2487 | 5.176958 | CGCTCTTATATTTGTTTACGGAGGG | 59.823 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2141 | 2488 | 5.751990 | ACGCTCTTATATTTGTTTACGGAGG | 59.248 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2142 | 2489 | 6.823678 | ACGCTCTTATATTTGTTTACGGAG | 57.176 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
2143 | 2490 | 7.599630 | AAACGCTCTTATATTTGTTTACGGA | 57.400 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2144 | 2491 | 8.810427 | TCTAAACGCTCTTATATTTGTTTACGG | 58.190 | 33.333 | 0.00 | 0.00 | 32.41 | 4.02 |
2149 | 2496 | 9.601217 | AGTGATCTAAACGCTCTTATATTTGTT | 57.399 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2156 | 2503 | 9.953697 | CTAAAGTAGTGATCTAAACGCTCTTAT | 57.046 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2157 | 2504 | 8.954350 | ACTAAAGTAGTGATCTAAACGCTCTTA | 58.046 | 33.333 | 0.00 | 0.00 | 37.69 | 2.10 |
2158 | 2505 | 7.828712 | ACTAAAGTAGTGATCTAAACGCTCTT | 58.171 | 34.615 | 0.00 | 0.00 | 37.69 | 2.85 |
2159 | 2506 | 7.393841 | ACTAAAGTAGTGATCTAAACGCTCT | 57.606 | 36.000 | 0.00 | 0.00 | 37.69 | 4.09 |
2160 | 2507 | 9.733219 | ATTACTAAAGTAGTGATCTAAACGCTC | 57.267 | 33.333 | 0.00 | 0.00 | 39.81 | 5.03 |
2161 | 2508 | 9.733219 | GATTACTAAAGTAGTGATCTAAACGCT | 57.267 | 33.333 | 11.11 | 0.00 | 44.10 | 5.07 |
2191 | 2538 | 9.381038 | TCCCTCTGTAAACTAATATAAGAGCAT | 57.619 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
2192 | 2539 | 8.777578 | TCCCTCTGTAAACTAATATAAGAGCA | 57.222 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
2193 | 2540 | 8.862085 | ACTCCCTCTGTAAACTAATATAAGAGC | 58.138 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
2199 | 2546 | 9.710818 | TCAAGTACTCCCTCTGTAAACTAATAT | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2200 | 2547 | 9.186837 | CTCAAGTACTCCCTCTGTAAACTAATA | 57.813 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
2201 | 2548 | 7.894364 | TCTCAAGTACTCCCTCTGTAAACTAAT | 59.106 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2202 | 2549 | 7.176340 | GTCTCAAGTACTCCCTCTGTAAACTAA | 59.824 | 40.741 | 0.00 | 0.00 | 0.00 | 2.24 |
2203 | 2550 | 6.658391 | GTCTCAAGTACTCCCTCTGTAAACTA | 59.342 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
2204 | 2551 | 5.477637 | GTCTCAAGTACTCCCTCTGTAAACT | 59.522 | 44.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2205 | 2552 | 5.243283 | TGTCTCAAGTACTCCCTCTGTAAAC | 59.757 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2206 | 2553 | 5.391256 | TGTCTCAAGTACTCCCTCTGTAAA | 58.609 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
2207 | 2554 | 4.994282 | TGTCTCAAGTACTCCCTCTGTAA | 58.006 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
2208 | 2555 | 4.652679 | TGTCTCAAGTACTCCCTCTGTA | 57.347 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2209 | 2556 | 3.527507 | TGTCTCAAGTACTCCCTCTGT | 57.472 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2210 | 2557 | 3.430098 | GCATGTCTCAAGTACTCCCTCTG | 60.430 | 52.174 | 0.00 | 0.00 | 0.00 | 3.35 |
2211 | 2558 | 2.763448 | GCATGTCTCAAGTACTCCCTCT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2212 | 2559 | 2.159028 | GGCATGTCTCAAGTACTCCCTC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
2213 | 2560 | 1.834263 | GGCATGTCTCAAGTACTCCCT | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
2214 | 2561 | 1.471676 | CGGCATGTCTCAAGTACTCCC | 60.472 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2215 | 2562 | 1.204941 | ACGGCATGTCTCAAGTACTCC | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2216 | 2563 | 2.656560 | ACGGCATGTCTCAAGTACTC | 57.343 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2217 | 2564 | 3.067106 | CAAACGGCATGTCTCAAGTACT | 58.933 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
2232 | 2579 | 1.271379 | ACAGAACATCCTCCCAAACGG | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
2233 | 2580 | 1.806542 | CACAGAACATCCTCCCAAACG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
2239 | 2586 | 3.409026 | ACTGTTCACAGAACATCCTCC | 57.591 | 47.619 | 14.00 | 0.00 | 46.59 | 4.30 |
2244 | 2591 | 7.047891 | TCTTGACTTAACTGTTCACAGAACAT | 58.952 | 34.615 | 14.00 | 2.71 | 46.59 | 2.71 |
2275 | 2622 | 3.048337 | ACAACCACCGTACCATAAGTG | 57.952 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2286 | 2633 | 2.773487 | TGGTCTATCAAACAACCACCG | 58.227 | 47.619 | 0.00 | 0.00 | 36.88 | 4.94 |
2303 | 2650 | 2.029380 | TCGACGATTCACAGTTCATGGT | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
2322 | 2706 | 5.296780 | ACATCCCAAAAGTAGCATACATTCG | 59.703 | 40.000 | 0.00 | 0.00 | 46.26 | 3.34 |
2350 | 2734 | 5.885912 | GGTAAGAGAATTTTCCATACTGGCA | 59.114 | 40.000 | 8.52 | 0.00 | 37.47 | 4.92 |
2360 | 2744 | 3.696548 | CCTGGGCTGGTAAGAGAATTTTC | 59.303 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
2365 | 2749 | 0.118346 | TCCCTGGGCTGGTAAGAGAA | 59.882 | 55.000 | 8.22 | 0.00 | 0.00 | 2.87 |
2387 | 2773 | 8.818141 | ACCACATGACATACTTCGAAATATAG | 57.182 | 34.615 | 0.00 | 0.00 | 0.00 | 1.31 |
2388 | 2774 | 9.256477 | GAACCACATGACATACTTCGAAATATA | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2389 | 2775 | 7.768582 | TGAACCACATGACATACTTCGAAATAT | 59.231 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2453 | 2841 | 9.555727 | AGAACAGCTAACAAGTTAACAAATCTA | 57.444 | 29.630 | 8.61 | 0.00 | 0.00 | 1.98 |
2507 | 2897 | 2.686558 | TCACGCAACTTGAAAGCATC | 57.313 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2620 | 3105 | 5.636123 | TGAAATTAAAGCAGGACCCTTACA | 58.364 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
2706 | 3193 | 0.746063 | CCTGGAAAACAAGTGCAGCA | 59.254 | 50.000 | 0.00 | 0.00 | 33.43 | 4.41 |
2728 | 3215 | 9.495572 | CCTTTTGAAGTTATCTATCCAGTATCC | 57.504 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2732 | 3219 | 9.981460 | AATTCCTTTTGAAGTTATCTATCCAGT | 57.019 | 29.630 | 0.00 | 0.00 | 36.14 | 4.00 |
2743 | 3230 | 7.145323 | CACCGTGATAAATTCCTTTTGAAGTT | 58.855 | 34.615 | 0.00 | 0.00 | 43.23 | 2.66 |
2763 | 3250 | 2.099652 | TAAGCTCTGCTGCACACCGT | 62.100 | 55.000 | 0.00 | 0.00 | 39.62 | 4.83 |
2875 | 3369 | 5.567430 | ACTTCTGAAACCCCAAATACTACC | 58.433 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.