Multiple sequence alignment - TraesCS1B01G446200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G446200 chr1B 100.000 6104 0 0 1 6104 666251730 666257833 0.000000e+00 11273.0
1 TraesCS1B01G446200 chr1B 93.370 181 9 3 5107 5285 663564994 663565173 1.300000e-66 265.0
2 TraesCS1B01G446200 chr1B 78.659 164 26 6 2590 2750 562512460 562512303 3.890000e-17 100.0
3 TraesCS1B01G446200 chr1B 76.596 188 33 10 2377 2560 416774084 416773904 6.510000e-15 93.5
4 TraesCS1B01G446200 chr1B 100.000 28 0 0 2001 2028 369225400 369225427 1.100000e-02 52.8
5 TraesCS1B01G446200 chr1A 87.804 2017 130 55 1 1950 574634858 574636825 0.000000e+00 2255.0
6 TraesCS1B01G446200 chr1A 91.354 1145 67 24 2021 3161 574636943 574638059 0.000000e+00 1537.0
7 TraesCS1B01G446200 chr1A 92.105 1102 44 13 3262 4362 574638058 574639117 0.000000e+00 1513.0
8 TraesCS1B01G446200 chr1A 93.075 982 51 9 5133 6104 574640768 574641742 0.000000e+00 1421.0
9 TraesCS1B01G446200 chr1A 81.834 578 81 19 3862 4424 520119018 520118450 1.200000e-126 464.0
10 TraesCS1B01G446200 chr1A 94.660 206 11 0 4750 4955 574639943 574640148 2.750000e-83 320.0
11 TraesCS1B01G446200 chr1A 82.639 144 19 6 2577 2718 506367630 506367491 8.310000e-24 122.0
12 TraesCS1B01G446200 chr1A 94.521 73 3 1 4964 5036 574640699 574640770 1.800000e-20 111.0
13 TraesCS1B01G446200 chr1D 93.303 1105 40 14 5002 6104 478358480 478359552 0.000000e+00 1600.0
14 TraesCS1B01G446200 chr1D 90.870 1172 85 17 3262 4424 478354869 478356027 0.000000e+00 1552.0
15 TraesCS1B01G446200 chr1D 88.928 1147 93 23 2021 3161 478353752 478354870 0.000000e+00 1384.0
16 TraesCS1B01G446200 chr1D 93.987 898 45 6 1059 1950 478352739 478353633 0.000000e+00 1351.0
17 TraesCS1B01G446200 chr1D 88.757 925 56 19 1 918 478351597 478352480 0.000000e+00 1088.0
18 TraesCS1B01G446200 chr1D 90.792 467 40 1 4489 4955 478357188 478357651 6.720000e-174 621.0
19 TraesCS1B01G446200 chr1D 80.982 163 20 8 2644 2804 483967567 483967720 1.070000e-22 119.0
20 TraesCS1B01G446200 chr1D 94.000 50 3 0 2667 2716 46460361 46460410 6.560000e-10 76.8
21 TraesCS1B01G446200 chr1D 82.609 69 9 3 2313 2380 398247982 398247916 2.380000e-04 58.4
22 TraesCS1B01G446200 chr5A 79.833 1200 170 44 3262 4424 29168775 29169939 0.000000e+00 809.0
23 TraesCS1B01G446200 chr5A 82.258 186 25 8 2620 2804 458496240 458496418 2.950000e-33 154.0
24 TraesCS1B01G446200 chr5A 75.983 229 38 12 2308 2528 437397249 437397468 1.080000e-17 102.0
25 TraesCS1B01G446200 chr5A 74.818 274 42 14 5680 5950 705737714 705737465 1.400000e-16 99.0
26 TraesCS1B01G446200 chr5A 74.818 274 42 14 5680 5950 705744147 705743898 1.400000e-16 99.0
27 TraesCS1B01G446200 chr5A 90.909 44 3 1 3853 3896 290111919 290111877 2.380000e-04 58.4
28 TraesCS1B01G446200 chr5A 85.185 54 6 1 2389 2442 667940130 667940079 3.000000e-03 54.7
29 TraesCS1B01G446200 chr5B 79.276 1216 160 55 3263 4424 34778073 34779250 0.000000e+00 765.0
30 TraesCS1B01G446200 chr5B 81.410 468 68 10 4489 4945 670522001 670522460 1.250000e-96 364.0
31 TraesCS1B01G446200 chr5B 81.333 75 8 5 2287 2355 438802718 438802792 8.550000e-04 56.5
32 TraesCS1B01G446200 chr2A 94.077 287 13 2 5107 5393 606237235 606237517 3.380000e-117 433.0
33 TraesCS1B01G446200 chr2A 78.058 278 46 12 2674 2943 694809019 694808749 1.760000e-35 161.0
34 TraesCS1B01G446200 chr2A 77.061 279 44 15 2674 2943 694808051 694807784 6.380000e-30 143.0
35 TraesCS1B01G446200 chr2A 89.362 47 5 0 2233 2279 68883094 68883140 6.610000e-05 60.2
36 TraesCS1B01G446200 chr2A 100.000 29 0 0 3797 3825 767993295 767993323 3.000000e-03 54.7
37 TraesCS1B01G446200 chr2D 80.298 604 77 26 3859 4455 621945038 621945606 9.460000e-113 418.0
38 TraesCS1B01G446200 chr2D 79.487 156 20 9 2981 3130 398112888 398112739 3.890000e-17 100.0
39 TraesCS1B01G446200 chr2D 90.323 62 6 0 3868 3929 618285521 618285582 1.410000e-11 82.4
40 TraesCS1B01G446200 chr2D 85.185 54 6 2 2328 2380 613311599 613311651 3.000000e-03 54.7
41 TraesCS1B01G446200 chr2D 84.746 59 4 5 3085 3138 621944562 621944620 3.000000e-03 54.7
42 TraesCS1B01G446200 chr7A 91.694 301 21 2 5107 5407 623775801 623776097 1.220000e-111 414.0
43 TraesCS1B01G446200 chr7A 89.968 309 22 5 5107 5407 623741755 623742062 2.060000e-104 390.0
44 TraesCS1B01G446200 chr7A 88.172 186 21 1 4763 4947 102096680 102096865 2.860000e-53 220.0
45 TraesCS1B01G446200 chr7A 82.517 143 22 2 3452 3594 644005364 644005503 8.310000e-24 122.0
46 TraesCS1B01G446200 chr7A 82.727 110 15 4 5488 5597 623742201 623742306 1.810000e-15 95.3
47 TraesCS1B01G446200 chr7A 100.000 29 0 0 2001 2029 61435918 61435946 3.000000e-03 54.7
48 TraesCS1B01G446200 chr3B 91.694 301 21 2 5107 5407 483421681 483421385 1.220000e-111 414.0
49 TraesCS1B01G446200 chr3B 91.713 181 12 3 5107 5285 26977430 26977251 1.310000e-61 248.0
50 TraesCS1B01G446200 chr3B 81.481 162 21 4 1769 1929 4184205 4184358 2.310000e-24 124.0
51 TraesCS1B01G446200 chr3B 80.864 162 22 4 1769 1929 5040982 5041135 1.070000e-22 119.0
52 TraesCS1B01G446200 chr3B 86.364 110 11 2 5488 5597 483421245 483421140 3.870000e-22 117.0
53 TraesCS1B01G446200 chr3B 77.698 139 21 10 2290 2425 598999721 598999852 6.560000e-10 76.8
54 TraesCS1B01G446200 chr4B 80.721 555 83 17 3881 4424 9076760 9077301 1.580000e-110 411.0
55 TraesCS1B01G446200 chr4B 85.047 107 9 1 3157 3263 262872505 262872604 1.080000e-17 102.0
56 TraesCS1B01G446200 chr4B 85.294 102 11 4 2673 2772 540728321 540728222 1.080000e-17 102.0
57 TraesCS1B01G446200 chr4B 81.633 98 13 5 5532 5628 665780690 665780597 6.560000e-10 76.8
58 TraesCS1B01G446200 chr4B 84.286 70 6 5 3064 3128 575761103 575761034 5.110000e-06 63.9
59 TraesCS1B01G446200 chr4B 100.000 28 0 0 1777 1804 20086462 20086435 1.100000e-02 52.8
60 TraesCS1B01G446200 chr3A 90.033 301 26 2 5107 5407 243663776 243663480 2.670000e-103 387.0
61 TraesCS1B01G446200 chr3A 82.073 463 62 13 4489 4948 11811446 11811002 5.780000e-100 375.0
62 TraesCS1B01G446200 chr3A 82.308 130 16 6 5488 5617 243663341 243663219 8.370000e-19 106.0
63 TraesCS1B01G446200 chr3A 96.875 32 1 0 1776 1807 729307158 729307189 3.000000e-03 54.7
64 TraesCS1B01G446200 chr3A 100.000 28 0 0 2001 2028 293558401 293558374 1.100000e-02 52.8
65 TraesCS1B01G446200 chrUn 81.316 471 69 10 4489 4948 35128473 35128011 1.250000e-96 364.0
66 TraesCS1B01G446200 chr3D 81.304 460 65 13 4489 4945 9314508 9314949 2.710000e-93 353.0
67 TraesCS1B01G446200 chr3D 73.860 329 61 12 2291 2614 560872003 560871695 2.330000e-19 108.0
68 TraesCS1B01G446200 chr3D 85.321 109 8 5 3157 3265 84326573 84326673 8.370000e-19 106.0
69 TraesCS1B01G446200 chr3D 86.316 95 11 2 2672 2766 455725195 455725287 1.080000e-17 102.0
70 TraesCS1B01G446200 chr3D 85.714 77 9 2 3855 3929 487114297 487114221 5.070000e-11 80.5
71 TraesCS1B01G446200 chr7B 88.172 186 21 1 4763 4947 54904560 54904375 2.860000e-53 220.0
72 TraesCS1B01G446200 chr7B 87.611 113 12 2 3159 3271 442376162 442376272 4.970000e-26 130.0
73 TraesCS1B01G446200 chr7B 86.607 112 9 4 3160 3266 6079438 6079548 1.070000e-22 119.0
74 TraesCS1B01G446200 chr7B 85.841 113 9 5 3160 3266 665103331 665103220 5.000000e-21 113.0
75 TraesCS1B01G446200 chr7B 78.698 169 27 5 2590 2750 154177319 154177486 3.010000e-18 104.0
76 TraesCS1B01G446200 chr7B 76.761 142 25 6 2812 2947 705331523 705331662 8.490000e-09 73.1
77 TraesCS1B01G446200 chr7B 100.000 29 0 0 2327 2355 134309497 134309469 3.000000e-03 54.7
78 TraesCS1B01G446200 chr7D 89.412 170 18 0 4763 4932 99792665 99792496 1.330000e-51 215.0
79 TraesCS1B01G446200 chr7D 82.317 164 25 3 2590 2750 184580828 184580990 8.250000e-29 139.0
80 TraesCS1B01G446200 chr7D 86.290 124 17 0 3467 3590 167247589 167247712 1.070000e-27 135.0
81 TraesCS1B01G446200 chr7D 85.156 128 17 1 3467 3594 89483244 89483119 4.970000e-26 130.0
82 TraesCS1B01G446200 chr7D 85.841 113 9 4 3156 3267 74416693 74416587 5.000000e-21 113.0
83 TraesCS1B01G446200 chr7D 76.923 143 27 5 3790 3928 482240083 482239943 6.560000e-10 76.8
84 TraesCS1B01G446200 chr7D 100.000 28 0 0 2328 2355 63974374 63974347 1.100000e-02 52.8
85 TraesCS1B01G446200 chr6D 84.028 144 20 2 3453 3596 426479838 426479698 1.070000e-27 135.0
86 TraesCS1B01G446200 chr6D 76.471 255 38 13 2230 2467 4366056 4365807 1.070000e-22 119.0
87 TraesCS1B01G446200 chr6D 76.522 115 22 4 3015 3127 26818499 26818610 2.380000e-04 58.4
88 TraesCS1B01G446200 chr6D 76.316 114 24 3 3015 3127 26862247 26862358 2.380000e-04 58.4
89 TraesCS1B01G446200 chr6D 76.522 115 22 4 3015 3127 26898585 26898696 2.380000e-04 58.4
90 TraesCS1B01G446200 chr2B 83.571 140 20 3 3455 3594 48804918 48804782 1.790000e-25 128.0
91 TraesCS1B01G446200 chr2B 85.437 103 11 2 3160 3262 116260082 116259984 3.010000e-18 104.0
92 TraesCS1B01G446200 chr2B 77.622 143 24 6 2811 2947 728928085 728928225 5.070000e-11 80.5
93 TraesCS1B01G446200 chr6A 84.000 125 10 5 3151 3271 412367519 412367401 1.800000e-20 111.0
94 TraesCS1B01G446200 chr6A 77.778 117 23 3 302 416 16240020 16239905 1.100000e-07 69.4
95 TraesCS1B01G446200 chr5D 85.088 114 9 3 3152 3265 242627036 242626931 6.470000e-20 110.0
96 TraesCS1B01G446200 chr5D 75.439 228 42 9 2308 2528 336261165 336261385 1.400000e-16 99.0
97 TraesCS1B01G446200 chr5D 75.439 228 42 9 2308 2528 336311339 336311119 1.400000e-16 99.0
98 TraesCS1B01G446200 chr5D 88.158 76 9 0 1088 1163 436980995 436981070 2.340000e-14 91.6
99 TraesCS1B01G446200 chr5D 78.740 127 18 9 3022 3143 1798110 1798232 6.560000e-10 76.8
100 TraesCS1B01G446200 chr5D 76.282 156 28 7 2882 3035 476752167 476752315 2.360000e-09 75.0
101 TraesCS1B01G446200 chr5D 97.500 40 1 0 1767 1806 21149937 21149898 1.100000e-07 69.4
102 TraesCS1B01G446200 chr5D 88.462 52 4 2 2797 2846 110812041 110811990 1.840000e-05 62.1
103 TraesCS1B01G446200 chr5D 90.244 41 4 0 1771 1811 476779941 476779981 3.000000e-03 54.7
104 TraesCS1B01G446200 chr4D 73.373 338 68 21 2812 3137 502049010 502048683 8.370000e-19 106.0
105 TraesCS1B01G446200 chr4D 100.000 28 0 0 2328 2355 498011910 498011883 1.100000e-02 52.8
106 TraesCS1B01G446200 chr6B 77.586 174 30 7 3269 3441 76200694 76200859 5.040000e-16 97.1
107 TraesCS1B01G446200 chr4A 82.653 98 12 5 5532 5628 26074075 26073982 1.410000e-11 82.4
108 TraesCS1B01G446200 chr4A 96.970 33 1 0 1775 1807 583439405 583439373 8.550000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G446200 chr1B 666251730 666257833 6103 False 11273.000000 11273 100.000000 1 6104 1 chr1B.!!$F3 6103
1 TraesCS1B01G446200 chr1A 574634858 574641742 6884 False 1192.833333 2255 92.253167 1 6104 6 chr1A.!!$F1 6103
2 TraesCS1B01G446200 chr1A 520118450 520119018 568 True 464.000000 464 81.834000 3862 4424 1 chr1A.!!$R2 562
3 TraesCS1B01G446200 chr1D 478351597 478359552 7955 False 1266.000000 1600 91.106167 1 6104 6 chr1D.!!$F3 6103
4 TraesCS1B01G446200 chr5A 29168775 29169939 1164 False 809.000000 809 79.833000 3262 4424 1 chr5A.!!$F1 1162
5 TraesCS1B01G446200 chr5B 34778073 34779250 1177 False 765.000000 765 79.276000 3263 4424 1 chr5B.!!$F1 1161
6 TraesCS1B01G446200 chr2D 621944562 621945606 1044 False 236.350000 418 82.522000 3085 4455 2 chr2D.!!$F3 1370
7 TraesCS1B01G446200 chr7A 623741755 623742306 551 False 242.650000 390 86.347500 5107 5597 2 chr7A.!!$F5 490
8 TraesCS1B01G446200 chr3B 483421140 483421681 541 True 265.500000 414 89.029000 5107 5597 2 chr3B.!!$R2 490
9 TraesCS1B01G446200 chr4B 9076760 9077301 541 False 411.000000 411 80.721000 3881 4424 1 chr4B.!!$F1 543
10 TraesCS1B01G446200 chr3A 243663219 243663776 557 True 246.500000 387 86.170500 5107 5617 2 chr3A.!!$R3 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 523 0.174617 TGCATTATGACGACTCCGCA 59.825 50.0 0.00 0.00 39.95 5.69 F
1117 1264 0.251564 AATGGTGGGACGATTGGCAA 60.252 50.0 0.68 0.68 0.00 4.52 F
1562 1714 0.244178 GGTCGCGGTTCTTCTCTTCT 59.756 55.0 6.13 0.00 0.00 2.85 F
3183 3432 0.515564 CCTCCGTACCAAAACAAGCG 59.484 55.0 0.00 0.00 0.00 4.68 F
3258 3507 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.0 0.00 0.00 0.00 4.30 F
3259 3508 0.257616 CTTATTTTGGGGCGGAGGGA 59.742 55.0 0.00 0.00 0.00 4.20 F
4560 6015 0.319727 GGCAGCATCTCATCTCCGAG 60.320 60.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1668 0.035739 GCTTTGGGTCGTTGGGTCTA 59.964 55.000 0.00 0.0 0.00 2.59 R
3013 3262 0.742505 ATGAATCAGCGGCATTGGTG 59.257 50.000 1.45 0.0 38.68 4.17 R
3245 3494 0.030909 TATACTCCCTCCGCCCCAAA 60.031 55.000 0.00 0.0 0.00 3.28 R
4650 6105 0.321122 CTGACTTGTGCTCACCCTCC 60.321 60.000 0.00 0.0 0.00 4.30 R
4659 6114 0.524862 CTCCATTGGCTGACTTGTGC 59.475 55.000 0.00 0.0 0.00 4.57 R
4767 6222 0.532862 CCCGGTACATGAGCATCCAC 60.533 60.000 0.00 0.0 0.00 4.02 R
5621 7997 1.944709 CATGCATGCTAACTGCTGCTA 59.055 47.619 20.33 0.0 42.28 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.669619 TGCAGCCACATGAACACAAG 59.330 50.000 0.00 0.00 0.00 3.16
55 56 3.012722 GATCCCCGACCCCAACCA 61.013 66.667 0.00 0.00 0.00 3.67
75 76 3.495100 CCACAACCAGCATAGTATCCTCC 60.495 52.174 0.00 0.00 0.00 4.30
77 78 3.643792 ACAACCAGCATAGTATCCTCCTC 59.356 47.826 0.00 0.00 0.00 3.71
79 80 4.139162 ACCAGCATAGTATCCTCCTCAT 57.861 45.455 0.00 0.00 0.00 2.90
81 82 3.197333 CCAGCATAGTATCCTCCTCATGG 59.803 52.174 0.00 0.00 0.00 3.66
173 176 0.397941 CACTGAGCTGAAACCCCTCA 59.602 55.000 0.00 0.00 34.68 3.86
232 238 2.571206 GTCGAAGTTTGCGTTGAATCC 58.429 47.619 0.00 0.00 0.00 3.01
233 239 2.032377 GTCGAAGTTTGCGTTGAATCCA 60.032 45.455 0.00 0.00 0.00 3.41
234 240 2.811431 TCGAAGTTTGCGTTGAATCCAT 59.189 40.909 0.00 0.00 0.00 3.41
235 241 2.910482 CGAAGTTTGCGTTGAATCCATG 59.090 45.455 0.00 0.00 0.00 3.66
242 248 1.268896 GCGTTGAATCCATGCATCTGG 60.269 52.381 0.00 0.00 37.66 3.86
244 250 2.381911 GTTGAATCCATGCATCTGGGT 58.618 47.619 6.50 0.00 36.89 4.51
278 284 3.950794 ATTGTGGACGCGGCGTGAT 62.951 57.895 34.44 14.79 41.37 3.06
288 294 0.940126 GCGGCGTGATCAAATCTGAT 59.060 50.000 9.37 0.00 45.34 2.90
409 415 0.815213 GAGCGTGCTCCATATGGCAA 60.815 55.000 17.58 0.00 40.26 4.52
469 475 2.792674 TGTGCGAAAACGATATCCGATC 59.207 45.455 0.00 0.00 41.76 3.69
514 520 1.202580 AGGCTGCATTATGACGACTCC 60.203 52.381 0.50 0.00 0.00 3.85
517 523 0.174617 TGCATTATGACGACTCCGCA 59.825 50.000 0.00 0.00 39.95 5.69
549 555 8.034058 ACAGTTTTCTATGTTAGTGATCAAGC 57.966 34.615 0.00 0.00 0.00 4.01
567 573 4.156190 TCAAGCGTAGTGGAGTAAGAAGAG 59.844 45.833 0.00 0.00 0.00 2.85
666 672 1.952990 TGGCGCAGAAATCAAGTCAAA 59.047 42.857 10.83 0.00 0.00 2.69
667 673 2.030893 TGGCGCAGAAATCAAGTCAAAG 60.031 45.455 10.83 0.00 0.00 2.77
668 674 2.030805 GGCGCAGAAATCAAGTCAAAGT 60.031 45.455 10.83 0.00 0.00 2.66
670 676 3.814945 CGCAGAAATCAAGTCAAAGTCC 58.185 45.455 0.00 0.00 0.00 3.85
672 678 4.023707 CGCAGAAATCAAGTCAAAGTCCTT 60.024 41.667 0.00 0.00 0.00 3.36
674 680 6.293407 CGCAGAAATCAAGTCAAAGTCCTTAA 60.293 38.462 0.00 0.00 0.00 1.85
675 681 7.573843 CGCAGAAATCAAGTCAAAGTCCTTAAT 60.574 37.037 0.00 0.00 0.00 1.40
676 682 8.730680 GCAGAAATCAAGTCAAAGTCCTTAATA 58.269 33.333 0.00 0.00 0.00 0.98
729 735 6.183360 GCGTGTGGACTTGGAATATATTATCG 60.183 42.308 0.00 0.00 0.00 2.92
779 791 1.517832 GCAGCAGGGACGACATAGT 59.482 57.895 0.00 0.00 0.00 2.12
792 804 8.330247 AGGGACGACATAGTAGTATATCATTCT 58.670 37.037 0.00 0.00 0.00 2.40
854 866 1.826385 AGCTAGCGCATTCCAAAGTT 58.174 45.000 11.47 0.00 39.10 2.66
855 867 1.470098 AGCTAGCGCATTCCAAAGTTG 59.530 47.619 11.47 0.00 39.10 3.16
856 868 1.468520 GCTAGCGCATTCCAAAGTTGA 59.531 47.619 11.47 0.00 35.78 3.18
857 869 2.476854 GCTAGCGCATTCCAAAGTTGAG 60.477 50.000 11.47 0.00 35.78 3.02
858 870 1.896220 AGCGCATTCCAAAGTTGAGA 58.104 45.000 11.47 0.00 0.00 3.27
876 897 3.578716 TGAGAGGCTGTAAAGTTGTAGCT 59.421 43.478 0.00 0.00 36.45 3.32
877 898 4.770531 TGAGAGGCTGTAAAGTTGTAGCTA 59.229 41.667 0.00 0.00 36.45 3.32
878 899 5.422331 TGAGAGGCTGTAAAGTTGTAGCTAT 59.578 40.000 0.00 0.00 36.45 2.97
879 900 5.908341 AGAGGCTGTAAAGTTGTAGCTATC 58.092 41.667 0.00 0.00 36.45 2.08
880 901 5.024785 AGGCTGTAAAGTTGTAGCTATCC 57.975 43.478 0.00 0.00 36.45 2.59
881 902 4.717280 AGGCTGTAAAGTTGTAGCTATCCT 59.283 41.667 0.00 0.00 36.45 3.24
882 903 5.897824 AGGCTGTAAAGTTGTAGCTATCCTA 59.102 40.000 0.00 0.00 36.45 2.94
891 912 4.440839 TGTAGCTATCCTATGCATGTCG 57.559 45.455 10.16 0.00 0.00 4.35
893 914 3.584406 AGCTATCCTATGCATGTCGAC 57.416 47.619 10.16 9.11 0.00 4.20
918 939 3.096489 TCTTTGGCTTTGACAACATGC 57.904 42.857 0.00 0.00 26.20 4.06
919 940 2.429971 TCTTTGGCTTTGACAACATGCA 59.570 40.909 0.00 0.00 26.20 3.96
920 941 3.069872 TCTTTGGCTTTGACAACATGCAT 59.930 39.130 0.00 0.00 26.20 3.96
921 942 2.442212 TGGCTTTGACAACATGCATG 57.558 45.000 25.09 25.09 0.00 4.06
922 943 1.962100 TGGCTTTGACAACATGCATGA 59.038 42.857 32.75 7.36 0.00 3.07
923 944 2.029739 TGGCTTTGACAACATGCATGAG 60.030 45.455 32.75 24.30 0.00 2.90
924 945 1.990563 GCTTTGACAACATGCATGAGC 59.009 47.619 32.75 23.29 42.57 4.26
935 956 1.933005 GCATGAGCATGACGAGAGC 59.067 57.895 14.27 0.00 41.20 4.09
938 1046 2.392821 CATGAGCATGACGAGAGCTAC 58.607 52.381 4.47 0.00 41.20 3.58
949 1057 2.761208 ACGAGAGCTACATTTGGCTACT 59.239 45.455 0.00 0.00 39.05 2.57
951 1059 2.869192 GAGAGCTACATTTGGCTACTGC 59.131 50.000 0.00 0.00 39.05 4.40
959 1067 1.795768 TTTGGCTACTGCGAGACTTG 58.204 50.000 0.00 0.00 40.82 3.16
970 1078 3.515630 TGCGAGACTTGATTCATCACTC 58.484 45.455 0.00 0.00 36.36 3.51
992 1101 3.655810 CTGCTCGCAGGGTCTCCAC 62.656 68.421 10.98 0.00 40.17 4.02
993 1102 3.386237 GCTCGCAGGGTCTCCACT 61.386 66.667 0.00 0.00 34.83 4.00
994 1103 2.888863 CTCGCAGGGTCTCCACTC 59.111 66.667 0.00 0.00 34.83 3.51
995 1104 2.680352 TCGCAGGGTCTCCACTCC 60.680 66.667 0.00 0.00 34.83 3.85
996 1105 2.997315 CGCAGGGTCTCCACTCCA 60.997 66.667 0.00 0.00 34.83 3.86
997 1106 2.362369 CGCAGGGTCTCCACTCCAT 61.362 63.158 0.00 0.00 34.83 3.41
998 1107 1.524482 GCAGGGTCTCCACTCCATC 59.476 63.158 0.00 0.00 34.83 3.51
999 1108 1.977293 GCAGGGTCTCCACTCCATCC 61.977 65.000 0.00 0.00 34.83 3.51
1004 1113 1.280457 GTCTCCACTCCATCCACCTT 58.720 55.000 0.00 0.00 0.00 3.50
1049 1161 7.125053 TGTGATAAACATAGATAGGGACACACA 59.875 37.037 0.00 0.00 32.36 3.72
1052 1164 5.344743 AACATAGATAGGGACACACACAG 57.655 43.478 0.00 0.00 0.00 3.66
1054 1166 5.211973 ACATAGATAGGGACACACACAGAT 58.788 41.667 0.00 0.00 0.00 2.90
1056 1168 7.013220 ACATAGATAGGGACACACACAGATAT 58.987 38.462 0.00 0.00 0.00 1.63
1058 1170 8.681806 CATAGATAGGGACACACACAGATATAG 58.318 40.741 0.00 0.00 0.00 1.31
1059 1171 6.853490 AGATAGGGACACACACAGATATAGA 58.147 40.000 0.00 0.00 0.00 1.98
1060 1172 6.945435 AGATAGGGACACACACAGATATAGAG 59.055 42.308 0.00 0.00 0.00 2.43
1062 1174 5.136828 AGGGACACACACAGATATAGAGAG 58.863 45.833 0.00 0.00 0.00 3.20
1064 1176 5.240623 GGGACACACACAGATATAGAGAGAG 59.759 48.000 0.00 0.00 0.00 3.20
1065 1177 5.240623 GGACACACACAGATATAGAGAGAGG 59.759 48.000 0.00 0.00 0.00 3.69
1071 1218 5.555542 ACACAGATATAGAGAGAGGGGAGAT 59.444 44.000 0.00 0.00 0.00 2.75
1080 1227 3.634910 GAGAGAGGGGAGATGTCTTACAC 59.365 52.174 0.00 0.00 0.00 2.90
1117 1264 0.251564 AATGGTGGGACGATTGGCAA 60.252 50.000 0.68 0.68 0.00 4.52
1123 1270 2.325082 GGACGATTGGCAACTGCGT 61.325 57.895 19.84 19.84 43.26 5.24
1126 1273 1.154413 CGATTGGCAACTGCGTGTC 60.154 57.895 0.00 0.00 43.26 3.67
1260 1407 1.338337 CGATCCTCTGGCAATCTACGT 59.662 52.381 0.00 0.00 0.00 3.57
1264 1411 1.565305 CTCTGGCAATCTACGTGCTC 58.435 55.000 0.00 0.00 41.88 4.26
1315 1467 1.358759 CAACTTTGGCGGTGACACC 59.641 57.895 15.13 15.13 34.05 4.16
1453 1605 1.352622 ACAACAAGCTGTGGGGGAGA 61.353 55.000 0.00 0.00 0.00 3.71
1516 1668 0.608640 CCTTCTACAAGTCGTGGCCT 59.391 55.000 3.32 0.00 0.00 5.19
1520 1672 2.089980 TCTACAAGTCGTGGCCTAGAC 58.910 52.381 19.17 19.17 37.63 2.59
1562 1714 0.244178 GGTCGCGGTTCTTCTCTTCT 59.756 55.000 6.13 0.00 0.00 2.85
1650 1802 1.985662 TATCGTCCGGGGTGCAAGT 60.986 57.895 0.00 0.00 0.00 3.16
1666 1818 2.884639 GCAAGTACCAAAGAAGCCTTCA 59.115 45.455 7.29 0.00 0.00 3.02
1784 1942 6.030228 GCTATGTGTAAGTTGCCTGAAAATC 58.970 40.000 0.00 0.00 0.00 2.17
1883 2042 2.028876 ACTACTGTTGTGTTTTGGGCC 58.971 47.619 0.00 0.00 0.00 5.80
1893 2052 3.906846 TGTGTTTTGGGCCCAAATATTCT 59.093 39.130 42.99 0.00 44.14 2.40
1919 2078 1.227734 ACGGTTTTGGGTCAGTCGG 60.228 57.895 0.00 0.00 0.00 4.79
1929 2088 6.746745 TTTGGGTCAGTCGGTTTATTATTC 57.253 37.500 0.00 0.00 0.00 1.75
1931 2090 4.472108 TGGGTCAGTCGGTTTATTATTCCT 59.528 41.667 0.00 0.00 0.00 3.36
1932 2091 5.045432 TGGGTCAGTCGGTTTATTATTCCTT 60.045 40.000 0.00 0.00 0.00 3.36
1954 2138 1.377202 GGCCGATGTTGCTTCCTCA 60.377 57.895 0.00 0.00 0.00 3.86
1995 2238 8.907222 ATGACTCAACATGTGTATATATGCAA 57.093 30.769 4.96 0.00 0.00 4.08
1999 2242 9.830975 ACTCAACATGTGTATATATGCAAGTAA 57.169 29.630 4.96 0.00 0.00 2.24
2017 2260 8.859090 TGCAAGTAATATATTTTGGAATGGAGG 58.141 33.333 2.68 0.00 0.00 4.30
2018 2261 8.306761 GCAAGTAATATATTTTGGAATGGAGGG 58.693 37.037 2.68 0.00 0.00 4.30
2019 2262 9.586732 CAAGTAATATATTTTGGAATGGAGGGA 57.413 33.333 2.68 0.00 0.00 4.20
2020 2263 9.813826 AAGTAATATATTTTGGAATGGAGGGAG 57.186 33.333 2.68 0.00 0.00 4.30
2021 2264 8.960064 AGTAATATATTTTGGAATGGAGGGAGT 58.040 33.333 2.68 0.00 0.00 3.85
2029 2272 5.957771 TGGAATGGAGGGAGTATATATGC 57.042 43.478 0.00 0.00 0.00 3.14
2030 2273 5.349690 TGGAATGGAGGGAGTATATATGCA 58.650 41.667 3.52 0.00 0.00 3.96
2031 2274 5.790096 TGGAATGGAGGGAGTATATATGCAA 59.210 40.000 3.52 0.00 0.00 4.08
2032 2275 6.070021 TGGAATGGAGGGAGTATATATGCAAG 60.070 42.308 3.52 0.00 0.00 4.01
2033 2276 6.069963 GGAATGGAGGGAGTATATATGCAAGT 60.070 42.308 3.52 0.00 0.00 3.16
2034 2277 7.125811 GGAATGGAGGGAGTATATATGCAAGTA 59.874 40.741 3.52 0.00 0.00 2.24
2035 2278 8.449423 AATGGAGGGAGTATATATGCAAGTAA 57.551 34.615 3.52 0.00 0.00 2.24
2036 2279 8.629821 ATGGAGGGAGTATATATGCAAGTAAT 57.370 34.615 3.52 0.00 0.00 1.89
2085 2328 9.787435 ACTATTTCCGTATCAAAATATAAGGCA 57.213 29.630 0.00 0.00 32.76 4.75
2091 2334 9.959749 TCCGTATCAAAATATAAGGCATTTTTC 57.040 29.630 0.00 0.00 34.22 2.29
2275 2520 5.009610 CGGGTAATAGCAATGCCACTAATTT 59.990 40.000 0.00 0.00 0.00 1.82
2524 2769 7.616528 AATGGTAATAGCAATGCCCTAATTT 57.383 32.000 0.00 0.00 0.00 1.82
2623 2868 3.270027 TCAATGGCACTAATCCGTTCTG 58.730 45.455 0.00 0.00 30.79 3.02
2844 3091 9.928236 TTGTTCTTGCATATTTTTAAAAAGTGC 57.072 25.926 28.94 28.94 40.68 4.40
2942 3191 9.614792 GAGTAATACCAATGACACTAATTCCTT 57.385 33.333 0.00 0.00 0.00 3.36
2953 3202 9.883142 ATGACACTAATTCCTTCTTTCTAAGAG 57.117 33.333 0.00 0.00 39.03 2.85
3046 3295 5.175673 CGCTGATTCATTCTTACGCATAAGA 59.824 40.000 0.00 0.00 44.17 2.10
3149 3398 9.393249 CCTTTTTGAAACTTCTTTTTCCAAAAC 57.607 29.630 0.00 0.00 36.19 2.43
3167 3416 9.901172 TTCCAAAACTTTATCTATTACTCCCTC 57.099 33.333 0.00 0.00 0.00 4.30
3168 3417 8.491958 TCCAAAACTTTATCTATTACTCCCTCC 58.508 37.037 0.00 0.00 0.00 4.30
3169 3418 7.441458 CCAAAACTTTATCTATTACTCCCTCCG 59.559 40.741 0.00 0.00 0.00 4.63
3170 3419 7.672122 AAACTTTATCTATTACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
3171 3420 8.773033 AAACTTTATCTATTACTCCCTCCGTA 57.227 34.615 0.00 0.00 0.00 4.02
3172 3421 7.757941 ACTTTATCTATTACTCCCTCCGTAC 57.242 40.000 0.00 0.00 0.00 3.67
3173 3422 6.718912 ACTTTATCTATTACTCCCTCCGTACC 59.281 42.308 0.00 0.00 0.00 3.34
3174 3423 4.736611 ATCTATTACTCCCTCCGTACCA 57.263 45.455 0.00 0.00 0.00 3.25
3175 3424 4.524802 TCTATTACTCCCTCCGTACCAA 57.475 45.455 0.00 0.00 0.00 3.67
3176 3425 4.870636 TCTATTACTCCCTCCGTACCAAA 58.129 43.478 0.00 0.00 0.00 3.28
3177 3426 5.271598 TCTATTACTCCCTCCGTACCAAAA 58.728 41.667 0.00 0.00 0.00 2.44
3178 3427 3.683365 TTACTCCCTCCGTACCAAAAC 57.317 47.619 0.00 0.00 0.00 2.43
3179 3428 1.426751 ACTCCCTCCGTACCAAAACA 58.573 50.000 0.00 0.00 0.00 2.83
3180 3429 1.770061 ACTCCCTCCGTACCAAAACAA 59.230 47.619 0.00 0.00 0.00 2.83
3181 3430 2.224450 ACTCCCTCCGTACCAAAACAAG 60.224 50.000 0.00 0.00 0.00 3.16
3182 3431 0.879090 CCCTCCGTACCAAAACAAGC 59.121 55.000 0.00 0.00 0.00 4.01
3183 3432 0.515564 CCTCCGTACCAAAACAAGCG 59.484 55.000 0.00 0.00 0.00 4.68
3184 3433 1.504359 CTCCGTACCAAAACAAGCGA 58.496 50.000 0.00 0.00 0.00 4.93
3185 3434 1.193874 CTCCGTACCAAAACAAGCGAC 59.806 52.381 0.00 0.00 0.00 5.19
3186 3435 1.202557 TCCGTACCAAAACAAGCGACT 60.203 47.619 0.00 0.00 0.00 4.18
3187 3436 1.193874 CCGTACCAAAACAAGCGACTC 59.806 52.381 0.00 0.00 0.00 3.36
3188 3437 1.136721 CGTACCAAAACAAGCGACTCG 60.137 52.381 0.00 0.00 0.00 4.18
3189 3438 2.129607 GTACCAAAACAAGCGACTCGA 58.870 47.619 1.63 0.00 0.00 4.04
3190 3439 0.935196 ACCAAAACAAGCGACTCGAC 59.065 50.000 1.63 0.00 0.00 4.20
3191 3440 0.934496 CCAAAACAAGCGACTCGACA 59.066 50.000 1.63 0.00 0.00 4.35
3192 3441 1.531149 CCAAAACAAGCGACTCGACAT 59.469 47.619 1.63 0.00 0.00 3.06
3193 3442 2.032030 CCAAAACAAGCGACTCGACATT 60.032 45.455 1.63 0.00 0.00 2.71
3194 3443 2.949714 AAACAAGCGACTCGACATTG 57.050 45.000 1.63 6.31 0.00 2.82
3195 3444 1.865865 AACAAGCGACTCGACATTGT 58.134 45.000 1.63 6.92 35.70 2.71
3196 3445 2.717580 ACAAGCGACTCGACATTGTA 57.282 45.000 12.64 0.00 32.58 2.41
3197 3446 2.325761 ACAAGCGACTCGACATTGTAC 58.674 47.619 12.64 0.00 32.58 2.90
3198 3447 2.030185 ACAAGCGACTCGACATTGTACT 60.030 45.455 12.64 0.00 32.58 2.73
3199 3448 3.189910 ACAAGCGACTCGACATTGTACTA 59.810 43.478 12.64 0.00 32.58 1.82
3200 3449 4.163552 CAAGCGACTCGACATTGTACTAA 58.836 43.478 1.63 0.00 0.00 2.24
3201 3450 3.756069 AGCGACTCGACATTGTACTAAC 58.244 45.455 1.63 0.00 0.00 2.34
3202 3451 3.439476 AGCGACTCGACATTGTACTAACT 59.561 43.478 1.63 0.00 0.00 2.24
3203 3452 4.082895 AGCGACTCGACATTGTACTAACTT 60.083 41.667 1.63 0.00 0.00 2.66
3204 3453 4.620184 GCGACTCGACATTGTACTAACTTT 59.380 41.667 1.63 0.00 0.00 2.66
3205 3454 5.442909 GCGACTCGACATTGTACTAACTTTG 60.443 44.000 1.63 0.00 0.00 2.77
3206 3455 5.628193 CGACTCGACATTGTACTAACTTTGT 59.372 40.000 0.00 0.00 0.00 2.83
3207 3456 6.798476 CGACTCGACATTGTACTAACTTTGTA 59.202 38.462 0.00 0.00 0.00 2.41
3208 3457 7.201215 CGACTCGACATTGTACTAACTTTGTAC 60.201 40.741 6.58 6.58 40.27 2.90
3209 3458 7.655490 ACTCGACATTGTACTAACTTTGTACT 58.345 34.615 12.73 0.00 40.44 2.73
3210 3459 8.786898 ACTCGACATTGTACTAACTTTGTACTA 58.213 33.333 12.73 7.35 40.44 1.82
3211 3460 9.616634 CTCGACATTGTACTAACTTTGTACTAA 57.383 33.333 12.73 7.51 40.44 2.24
3212 3461 9.964303 TCGACATTGTACTAACTTTGTACTAAA 57.036 29.630 12.73 3.20 40.44 1.85
3237 3486 9.662947 AAGTTAGTACAAAGTACAAAGTTGAGT 57.337 29.630 9.68 0.00 0.00 3.41
3238 3487 9.310716 AGTTAGTACAAAGTACAAAGTTGAGTC 57.689 33.333 9.68 0.00 0.00 3.36
3239 3488 9.090692 GTTAGTACAAAGTACAAAGTTGAGTCA 57.909 33.333 9.68 0.00 0.00 3.41
3240 3489 7.535489 AGTACAAAGTACAAAGTTGAGTCAC 57.465 36.000 9.68 0.00 0.00 3.67
3241 3490 7.328737 AGTACAAAGTACAAAGTTGAGTCACT 58.671 34.615 9.68 0.00 0.00 3.41
3242 3491 7.822822 AGTACAAAGTACAAAGTTGAGTCACTT 59.177 33.333 9.68 0.00 38.74 3.16
3243 3492 9.090692 GTACAAAGTACAAAGTTGAGTCACTTA 57.909 33.333 0.00 0.00 35.87 2.24
3244 3493 8.732746 ACAAAGTACAAAGTTGAGTCACTTAT 57.267 30.769 0.00 0.00 35.87 1.73
3245 3494 9.174166 ACAAAGTACAAAGTTGAGTCACTTATT 57.826 29.630 0.00 0.00 35.87 1.40
3249 3498 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
3250 3499 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
3251 3500 6.183360 ACAAAGTTGAGTCACTTATTTTGGGG 60.183 38.462 12.94 0.00 35.87 4.96
3252 3501 3.826729 AGTTGAGTCACTTATTTTGGGGC 59.173 43.478 0.00 0.00 0.00 5.80
3253 3502 2.432444 TGAGTCACTTATTTTGGGGCG 58.568 47.619 0.00 0.00 0.00 6.13
3254 3503 1.743394 GAGTCACTTATTTTGGGGCGG 59.257 52.381 0.00 0.00 0.00 6.13
3255 3504 1.353022 AGTCACTTATTTTGGGGCGGA 59.647 47.619 0.00 0.00 0.00 5.54
3256 3505 1.743394 GTCACTTATTTTGGGGCGGAG 59.257 52.381 0.00 0.00 0.00 4.63
3257 3506 1.102978 CACTTATTTTGGGGCGGAGG 58.897 55.000 0.00 0.00 0.00 4.30
3258 3507 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30
3259 3508 0.257616 CTTATTTTGGGGCGGAGGGA 59.742 55.000 0.00 0.00 0.00 4.20
3260 3509 0.257616 TTATTTTGGGGCGGAGGGAG 59.742 55.000 0.00 0.00 0.00 4.30
3261 3510 0.917333 TATTTTGGGGCGGAGGGAGT 60.917 55.000 0.00 0.00 0.00 3.85
3262 3511 0.917333 ATTTTGGGGCGGAGGGAGTA 60.917 55.000 0.00 0.00 0.00 2.59
3512 3767 9.146984 GTGTGTAAGTATACAAGCAACTATTGA 57.853 33.333 5.50 0.00 43.41 2.57
3961 4296 7.672983 TTTTTGTTTGTTTTATTCAGCCACA 57.327 28.000 0.00 0.00 0.00 4.17
3962 4297 7.672983 TTTTGTTTGTTTTATTCAGCCACAA 57.327 28.000 0.00 0.00 0.00 3.33
3963 4298 7.856145 TTTGTTTGTTTTATTCAGCCACAAT 57.144 28.000 0.00 0.00 0.00 2.71
3964 4299 7.856145 TTGTTTGTTTTATTCAGCCACAATT 57.144 28.000 0.00 0.00 0.00 2.32
3965 4300 7.856145 TGTTTGTTTTATTCAGCCACAATTT 57.144 28.000 0.00 0.00 0.00 1.82
3966 4301 7.914465 TGTTTGTTTTATTCAGCCACAATTTC 58.086 30.769 0.00 0.00 0.00 2.17
4207 4550 3.287312 TCGGTTTGGTAGTTGACGTAG 57.713 47.619 0.00 0.00 0.00 3.51
4248 4594 3.630769 TGTGGTTTGCGGTTATTGTAACA 59.369 39.130 2.68 0.00 0.00 2.41
4254 4600 7.040617 TGGTTTGCGGTTATTGTAACATTTCTA 60.041 33.333 2.68 0.00 0.00 2.10
4379 4729 7.383572 GTGTGGAATATGAGCTCTATGTTAGTG 59.616 40.741 16.19 0.00 0.00 2.74
4425 4775 8.479689 TGCATCACAAAATGGATATTCTGATTT 58.520 29.630 0.00 0.00 0.00 2.17
4462 4812 9.636789 TGAGAATCACAAAATGGATATTCTGAT 57.363 29.630 0.00 0.00 42.56 2.90
4474 4824 7.275888 TGGATATTCTGATTTTTCAATCCCG 57.724 36.000 0.00 0.00 38.50 5.14
4475 4825 7.059788 TGGATATTCTGATTTTTCAATCCCGA 58.940 34.615 0.00 0.00 38.50 5.14
4476 4826 7.229306 TGGATATTCTGATTTTTCAATCCCGAG 59.771 37.037 0.00 0.00 38.50 4.63
4477 4827 7.445402 GGATATTCTGATTTTTCAATCCCGAGA 59.555 37.037 0.00 0.00 38.50 4.04
4478 4828 8.930846 ATATTCTGATTTTTCAATCCCGAGAT 57.069 30.769 0.00 0.00 38.50 2.75
4479 4829 6.683974 TTCTGATTTTTCAATCCCGAGATC 57.316 37.500 0.00 0.00 38.50 2.75
4480 4830 5.744171 TCTGATTTTTCAATCCCGAGATCA 58.256 37.500 0.00 0.00 38.50 2.92
4481 4831 6.179756 TCTGATTTTTCAATCCCGAGATCAA 58.820 36.000 0.00 0.00 38.50 2.57
4486 5941 2.752030 TCAATCCCGAGATCAAGTCCT 58.248 47.619 0.00 0.00 0.00 3.85
4487 5942 2.695666 TCAATCCCGAGATCAAGTCCTC 59.304 50.000 0.00 0.00 0.00 3.71
4497 5952 0.824109 TCAAGTCCTCCTACATGGCG 59.176 55.000 0.00 0.00 35.26 5.69
4506 5961 2.436469 TACATGGCGCACCTGCTG 60.436 61.111 10.83 0.00 39.32 4.41
4515 5970 1.403249 GCGCACCTGCTGAATTTCAAT 60.403 47.619 0.30 0.00 39.32 2.57
4531 5986 1.833630 TCAATCCCGAGATGCTTCTGT 59.166 47.619 6.88 0.00 31.29 3.41
4533 5988 0.755686 ATCCCGAGATGCTTCTGTCC 59.244 55.000 6.88 0.00 30.30 4.02
4560 6015 0.319727 GGCAGCATCTCATCTCCGAG 60.320 60.000 0.00 0.00 0.00 4.63
4572 6027 2.444706 TCCGAGGCCATGGAGGAG 60.445 66.667 18.40 3.16 41.22 3.69
4591 6046 4.657013 GGAGATCAAGTCCTCCTTTTTGT 58.343 43.478 0.00 0.00 44.23 2.83
4593 6048 4.319177 AGATCAAGTCCTCCTTTTTGTCG 58.681 43.478 0.00 0.00 0.00 4.35
4596 6051 3.875134 TCAAGTCCTCCTTTTTGTCGAAC 59.125 43.478 0.00 0.00 0.00 3.95
4597 6052 2.480845 AGTCCTCCTTTTTGTCGAACG 58.519 47.619 0.00 0.00 0.00 3.95
4599 6054 2.475487 GTCCTCCTTTTTGTCGAACGAG 59.525 50.000 0.00 0.00 0.00 4.18
4600 6055 1.194772 CCTCCTTTTTGTCGAACGAGC 59.805 52.381 0.00 0.00 0.00 5.03
4603 6058 2.223144 TCCTTTTTGTCGAACGAGCATG 59.777 45.455 0.00 0.00 0.00 4.06
4605 6060 3.473367 CTTTTTGTCGAACGAGCATGAG 58.527 45.455 0.00 0.00 0.00 2.90
4625 6080 2.101415 AGTTGAGCCAAAAAGAGCAACC 59.899 45.455 0.00 0.00 37.04 3.77
4631 6086 1.070601 CCAAAAAGAGCAACCCAAGGG 59.929 52.381 2.91 2.91 42.03 3.95
4659 6114 4.864334 GCCATGGCGGAGGGTGAG 62.864 72.222 23.48 0.00 36.56 3.51
4670 6125 0.952984 GAGGGTGAGCACAAGTCAGC 60.953 60.000 2.75 0.00 40.91 4.26
4671 6126 3.660621 GGTGAGCACAAGTCAGCC 58.339 61.111 2.75 0.00 36.60 4.85
4678 6133 0.524862 GCACAAGTCAGCCAATGGAG 59.475 55.000 2.05 0.00 0.00 3.86
4728 6183 0.958876 TCACAGAGGCATGCAAGCTG 60.959 55.000 21.36 22.76 34.17 4.24
4731 6186 3.834799 GAGGCATGCAAGCTGGCC 61.835 66.667 21.36 16.24 46.77 5.36
4767 6222 4.203076 CCGGACCCTAAGACGCGG 62.203 72.222 12.47 0.00 0.00 6.46
4863 6318 1.973812 GAGCTTGGGTGAAGGTGGC 60.974 63.158 0.00 0.00 42.62 5.01
4880 6335 1.077089 GGCGAGTTCCTCACTTACGC 61.077 60.000 0.00 0.00 44.30 4.42
4932 6387 4.569279 TTGGCCGACAAGCTTCAA 57.431 50.000 0.00 0.00 33.18 2.69
4934 6389 0.383949 TTGGCCGACAAGCTTCAAAC 59.616 50.000 0.00 0.00 33.18 2.93
4955 6410 2.097038 CGCCGGAGACTCAAGCTTG 61.097 63.158 20.81 20.81 0.00 4.01
4956 6411 1.004440 GCCGGAGACTCAAGCTTGT 60.004 57.895 25.19 7.87 0.00 3.16
4959 6414 1.066573 CCGGAGACTCAAGCTTGTGAT 60.067 52.381 29.78 19.24 0.00 3.06
4960 6415 2.613977 CCGGAGACTCAAGCTTGTGATT 60.614 50.000 29.78 18.55 0.00 2.57
4961 6416 3.070018 CGGAGACTCAAGCTTGTGATTT 58.930 45.455 29.78 16.45 0.00 2.17
4965 6982 5.334724 GGAGACTCAAGCTTGTGATTTTCTG 60.335 44.000 29.78 11.62 0.00 3.02
5048 7315 7.279758 AGAGTATTCTGTTCTTTCAGCAATAGC 59.720 37.037 0.00 0.00 35.63 2.97
5050 7317 5.618056 TTCTGTTCTTTCAGCAATAGCAG 57.382 39.130 0.00 0.00 45.49 4.24
5051 7318 4.005650 TCTGTTCTTTCAGCAATAGCAGG 58.994 43.478 0.00 0.00 45.49 4.85
5064 7331 4.272991 GCAATAGCAGGTGATGAAGAAGAG 59.727 45.833 0.00 0.00 41.58 2.85
5068 7335 4.978099 AGCAGGTGATGAAGAAGAGAAAA 58.022 39.130 0.00 0.00 0.00 2.29
5070 7337 4.155644 GCAGGTGATGAAGAAGAGAAAAGG 59.844 45.833 0.00 0.00 0.00 3.11
5071 7338 5.312079 CAGGTGATGAAGAAGAGAAAAGGT 58.688 41.667 0.00 0.00 0.00 3.50
5113 7380 2.761208 GCACTTCCTCTACCAAGCTAGA 59.239 50.000 0.00 0.00 0.00 2.43
5137 7404 4.579340 AGATCGATGCAGCTTCAATTCAAT 59.421 37.500 0.54 0.00 0.00 2.57
5234 7501 1.133513 ACAACATGGCCTTCTGGTTCA 60.134 47.619 3.32 0.00 35.27 3.18
5321 7599 2.166664 GTCCTTGTACTTCTCCGAGCAT 59.833 50.000 0.00 0.00 0.00 3.79
5586 7958 2.066262 CCTACACGCAACGACAAAGAT 58.934 47.619 0.00 0.00 0.00 2.40
5665 8041 3.088923 TCCCAAGAGACAAGGGGAG 57.911 57.895 0.00 0.00 44.54 4.30
5677 8053 2.450886 ACAAGGGGAGATCCAAGGTTTT 59.549 45.455 0.47 0.00 37.91 2.43
5678 8054 3.116746 ACAAGGGGAGATCCAAGGTTTTT 60.117 43.478 0.47 0.00 37.91 1.94
5685 8061 6.455647 GGGAGATCCAAGGTTTTTAAAACTG 58.544 40.000 18.31 10.68 35.78 3.16
5759 8135 3.932710 TCTGTCGTGAACATCATTTAGGC 59.067 43.478 0.00 0.00 37.23 3.93
5821 8197 6.671614 TTGTGTTGACTGTTTACCTACTTG 57.328 37.500 0.00 0.00 0.00 3.16
5827 8203 6.022163 TGACTGTTTACCTACTTGCTACTC 57.978 41.667 0.00 0.00 0.00 2.59
5846 8222 1.985159 TCACCTACATGTGCTTCCCTT 59.015 47.619 9.11 0.00 36.17 3.95
5862 8238 5.568223 GCTTCCCTTGCATTTTTCTTCATCT 60.568 40.000 0.00 0.00 0.00 2.90
5875 8251 8.924511 TTTTTCTTCATCTGACTAAACAGGAT 57.075 30.769 0.00 0.00 38.31 3.24
5959 8335 3.567478 AACAGAAAGAGACCACTTGCT 57.433 42.857 0.00 0.00 36.31 3.91
6026 8402 8.654230 AACAAGATGTGCATAGATAACTAGTG 57.346 34.615 0.00 0.00 31.78 2.74
6047 8423 4.265320 GTGGACAAAGAAGAAAAACAAGCG 59.735 41.667 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.815615 GGTCGGGGATCATGCTGAAC 60.816 60.000 0.00 0.00 0.00 3.18
41 42 3.892162 TTGTGGTTGGGGTCGGGG 61.892 66.667 0.00 0.00 0.00 5.73
42 43 2.596338 GTTGTGGTTGGGGTCGGG 60.596 66.667 0.00 0.00 0.00 5.14
43 44 2.596338 GGTTGTGGTTGGGGTCGG 60.596 66.667 0.00 0.00 0.00 4.79
44 45 1.896660 CTGGTTGTGGTTGGGGTCG 60.897 63.158 0.00 0.00 0.00 4.79
45 46 2.200337 GCTGGTTGTGGTTGGGGTC 61.200 63.158 0.00 0.00 0.00 4.46
79 80 0.672889 ATTTTGTGTGCATGCGACCA 59.327 45.000 14.09 6.82 0.00 4.02
81 82 1.980844 CAGATTTTGTGTGCATGCGAC 59.019 47.619 14.09 12.74 0.00 5.19
173 176 1.284111 TTGGGCTCCTCATCCATGCT 61.284 55.000 0.00 0.00 0.00 3.79
232 238 4.202172 TGCAATGAAATACCCAGATGCATG 60.202 41.667 2.46 0.00 36.24 4.06
233 239 3.962063 TGCAATGAAATACCCAGATGCAT 59.038 39.130 0.00 0.00 36.24 3.96
234 240 3.363627 TGCAATGAAATACCCAGATGCA 58.636 40.909 0.00 0.00 37.71 3.96
235 241 4.389890 TTGCAATGAAATACCCAGATGC 57.610 40.909 0.00 0.00 33.56 3.91
242 248 6.873076 TCCACAATTCTTTGCAATGAAATACC 59.127 34.615 25.89 0.00 36.22 2.73
244 250 6.585702 CGTCCACAATTCTTTGCAATGAAATA 59.414 34.615 25.89 9.25 36.22 1.40
278 284 4.707563 CAACGTTAACGCATCAGATTTGA 58.292 39.130 27.07 0.00 44.43 2.69
288 294 0.663688 AACATGGCAACGTTAACGCA 59.336 45.000 27.07 16.99 44.43 5.24
409 415 6.053005 CCCGCCATATGGAATTATACGTAAT 58.947 40.000 26.47 0.00 37.39 1.89
452 458 4.266739 TGTGTTGATCGGATATCGTTTTCG 59.733 41.667 0.00 0.00 45.64 3.46
469 475 2.099141 ATCGTGAGACCCATGTGTTG 57.901 50.000 0.00 0.00 46.97 3.33
514 520 4.798907 ACATAGAAAACTGTCGTAGATGCG 59.201 41.667 0.00 0.00 40.67 4.73
517 523 8.737175 TCACTAACATAGAAAACTGTCGTAGAT 58.263 33.333 0.00 0.00 40.67 1.98
549 555 5.818336 TCAGATCTCTTCTTACTCCACTACG 59.182 44.000 0.00 0.00 29.93 3.51
567 573 7.913674 AACTATTTTCACTCCTTGTCAGATC 57.086 36.000 0.00 0.00 0.00 2.75
607 613 1.583054 ACTTGAAAGTGCACTCGGTC 58.417 50.000 21.95 17.64 37.98 4.79
629 635 3.427503 GCGCCAAACATATTTGTGCTACT 60.428 43.478 0.00 0.00 43.23 2.57
630 636 2.851824 GCGCCAAACATATTTGTGCTAC 59.148 45.455 0.00 0.00 43.23 3.58
649 655 3.499918 AGGACTTTGACTTGATTTCTGCG 59.500 43.478 0.00 0.00 0.00 5.18
667 673 9.609950 CGTACTCTATGCTTTAGTATTAAGGAC 57.390 37.037 0.00 0.00 0.00 3.85
668 674 9.347240 ACGTACTCTATGCTTTAGTATTAAGGA 57.653 33.333 0.00 0.00 0.00 3.36
674 680 9.775854 TTCTCTACGTACTCTATGCTTTAGTAT 57.224 33.333 0.00 0.00 0.00 2.12
675 681 9.039870 GTTCTCTACGTACTCTATGCTTTAGTA 57.960 37.037 0.00 0.00 0.00 1.82
676 682 7.254387 CGTTCTCTACGTACTCTATGCTTTAGT 60.254 40.741 0.00 0.00 45.14 2.24
677 683 7.064674 CGTTCTCTACGTACTCTATGCTTTAG 58.935 42.308 0.00 0.00 45.14 1.85
678 684 6.941802 CGTTCTCTACGTACTCTATGCTTTA 58.058 40.000 0.00 0.00 45.14 1.85
729 735 1.611592 GCTTTGCGTGCTGTGAATGC 61.612 55.000 0.00 0.00 0.00 3.56
792 804 6.882610 TTCTACTACGTCCTCACAAGTTTA 57.117 37.500 0.00 0.00 0.00 2.01
854 866 3.578716 AGCTACAACTTTACAGCCTCTCA 59.421 43.478 0.00 0.00 34.49 3.27
855 867 4.195225 AGCTACAACTTTACAGCCTCTC 57.805 45.455 0.00 0.00 34.49 3.20
856 868 5.163395 GGATAGCTACAACTTTACAGCCTCT 60.163 44.000 0.00 0.00 34.49 3.69
857 869 5.051153 GGATAGCTACAACTTTACAGCCTC 58.949 45.833 0.00 0.00 34.49 4.70
858 870 4.717280 AGGATAGCTACAACTTTACAGCCT 59.283 41.667 0.00 0.00 34.49 4.58
876 897 7.468141 AGATAAAGTCGACATGCATAGGATA 57.532 36.000 19.50 0.00 0.00 2.59
877 898 6.352016 AGATAAAGTCGACATGCATAGGAT 57.648 37.500 19.50 0.00 0.00 3.24
878 899 5.791336 AGATAAAGTCGACATGCATAGGA 57.209 39.130 19.50 0.00 0.00 2.94
879 900 6.293081 CCAAAGATAAAGTCGACATGCATAGG 60.293 42.308 19.50 5.26 0.00 2.57
880 901 6.653183 CCAAAGATAAAGTCGACATGCATAG 58.347 40.000 19.50 0.00 0.00 2.23
881 902 5.007626 GCCAAAGATAAAGTCGACATGCATA 59.992 40.000 19.50 3.45 0.00 3.14
882 903 4.201950 GCCAAAGATAAAGTCGACATGCAT 60.202 41.667 19.50 5.00 0.00 3.96
891 912 6.503524 TGTTGTCAAAGCCAAAGATAAAGTC 58.496 36.000 0.00 0.00 0.00 3.01
893 914 6.128742 GCATGTTGTCAAAGCCAAAGATAAAG 60.129 38.462 0.00 0.00 0.00 1.85
918 939 2.223665 TGTAGCTCTCGTCATGCTCATG 60.224 50.000 3.55 3.55 38.15 3.07
919 940 2.027385 TGTAGCTCTCGTCATGCTCAT 58.973 47.619 0.00 0.00 38.15 2.90
920 941 1.463674 TGTAGCTCTCGTCATGCTCA 58.536 50.000 0.00 0.00 38.15 4.26
921 942 2.791383 ATGTAGCTCTCGTCATGCTC 57.209 50.000 0.00 0.00 38.15 4.26
922 943 3.193263 CAAATGTAGCTCTCGTCATGCT 58.807 45.455 0.00 0.00 40.43 3.79
923 944 2.286294 CCAAATGTAGCTCTCGTCATGC 59.714 50.000 0.00 0.00 0.00 4.06
924 945 2.286294 GCCAAATGTAGCTCTCGTCATG 59.714 50.000 0.00 0.00 0.00 3.07
925 946 2.169352 AGCCAAATGTAGCTCTCGTCAT 59.831 45.455 0.00 0.00 32.71 3.06
926 947 1.550524 AGCCAAATGTAGCTCTCGTCA 59.449 47.619 0.00 0.00 32.71 4.35
927 948 2.301577 AGCCAAATGTAGCTCTCGTC 57.698 50.000 0.00 0.00 32.71 4.20
928 949 2.761208 AGTAGCCAAATGTAGCTCTCGT 59.239 45.455 0.00 0.00 40.56 4.18
930 951 2.869192 GCAGTAGCCAAATGTAGCTCTC 59.131 50.000 0.00 0.00 40.56 3.20
933 954 1.207089 TCGCAGTAGCCAAATGTAGCT 59.793 47.619 0.00 0.00 43.20 3.32
934 955 1.594862 CTCGCAGTAGCCAAATGTAGC 59.405 52.381 0.00 0.00 37.52 3.58
935 956 2.860735 GTCTCGCAGTAGCCAAATGTAG 59.139 50.000 0.00 0.00 37.52 2.74
938 1046 2.015736 AGTCTCGCAGTAGCCAAATG 57.984 50.000 0.00 0.00 37.52 2.32
949 1057 3.515630 GAGTGATGAATCAAGTCTCGCA 58.484 45.455 0.00 0.00 38.75 5.10
951 1059 3.131933 AGGGAGTGATGAATCAAGTCTCG 59.868 47.826 0.00 0.00 38.75 4.04
959 1067 2.545532 CGAGCAGAGGGAGTGATGAATC 60.546 54.545 0.00 0.00 0.00 2.52
970 1078 4.154347 GACCCTGCGAGCAGAGGG 62.154 72.222 24.93 20.99 46.30 4.30
992 1101 3.276857 CAATCACTCAAGGTGGATGGAG 58.723 50.000 0.00 0.00 45.38 3.86
993 1102 2.644299 ACAATCACTCAAGGTGGATGGA 59.356 45.455 0.00 0.00 45.38 3.41
994 1103 3.077484 ACAATCACTCAAGGTGGATGG 57.923 47.619 0.00 0.00 45.38 3.51
995 1104 5.248640 AGTAACAATCACTCAAGGTGGATG 58.751 41.667 0.00 0.00 45.38 3.51
996 1105 5.505181 AGTAACAATCACTCAAGGTGGAT 57.495 39.130 0.00 0.00 45.38 3.41
997 1106 4.974645 AGTAACAATCACTCAAGGTGGA 57.025 40.909 0.00 0.00 45.38 4.02
998 1107 6.231211 AGTAAGTAACAATCACTCAAGGTGG 58.769 40.000 0.00 0.00 45.38 4.61
999 1108 7.226720 ACAAGTAAGTAACAATCACTCAAGGTG 59.773 37.037 0.00 0.00 46.60 4.00
1004 1113 9.990360 TTATCACAAGTAAGTAACAATCACTCA 57.010 29.630 0.00 0.00 0.00 3.41
1040 1152 5.133941 TCTCTCTATATCTGTGTGTGTCCC 58.866 45.833 0.00 0.00 0.00 4.46
1044 1156 4.522405 CCCCTCTCTCTATATCTGTGTGTG 59.478 50.000 0.00 0.00 0.00 3.82
1049 1161 5.555542 ACATCTCCCCTCTCTCTATATCTGT 59.444 44.000 0.00 0.00 0.00 3.41
1052 1164 6.327386 AGACATCTCCCCTCTCTCTATATC 57.673 45.833 0.00 0.00 0.00 1.63
1054 1166 6.562993 TGTAAGACATCTCCCCTCTCTCTATA 59.437 42.308 0.00 0.00 0.00 1.31
1056 1168 4.727332 TGTAAGACATCTCCCCTCTCTCTA 59.273 45.833 0.00 0.00 0.00 2.43
1058 1170 3.634910 GTGTAAGACATCTCCCCTCTCTC 59.365 52.174 0.00 0.00 0.00 3.20
1059 1171 3.270960 AGTGTAAGACATCTCCCCTCTCT 59.729 47.826 0.00 0.00 0.00 3.10
1060 1172 3.637769 AGTGTAAGACATCTCCCCTCTC 58.362 50.000 0.00 0.00 0.00 3.20
1062 1174 3.118592 CCAAGTGTAAGACATCTCCCCTC 60.119 52.174 0.00 0.00 0.00 4.30
1064 1176 2.838202 TCCAAGTGTAAGACATCTCCCC 59.162 50.000 0.00 0.00 0.00 4.81
1065 1177 3.769844 TCTCCAAGTGTAAGACATCTCCC 59.230 47.826 0.00 0.00 0.00 4.30
1071 1218 2.563179 GCTCCTCTCCAAGTGTAAGACA 59.437 50.000 0.00 0.00 0.00 3.41
1080 1227 0.612229 TTGCAGAGCTCCTCTCCAAG 59.388 55.000 10.93 0.00 42.90 3.61
1123 1270 2.997315 CTGCCCAGGACGAGGACA 60.997 66.667 0.00 0.00 0.00 4.02
1260 1407 1.841302 ATTGAAGAGGGTGGCGAGCA 61.841 55.000 0.00 0.00 0.00 4.26
1264 1411 2.464459 GCGATTGAAGAGGGTGGCG 61.464 63.158 0.00 0.00 0.00 5.69
1453 1605 1.153249 CACCAAGGTCACGGTGTGT 60.153 57.895 8.17 0.00 46.31 3.72
1516 1668 0.035739 GCTTTGGGTCGTTGGGTCTA 59.964 55.000 0.00 0.00 0.00 2.59
1520 1672 1.472480 CAATAGCTTTGGGTCGTTGGG 59.528 52.381 0.00 0.00 0.00 4.12
1562 1714 1.541310 AAGCTGATGACCCCGACGAA 61.541 55.000 0.00 0.00 0.00 3.85
1617 1769 1.729470 CGATACAGCCGCCAGTCTCT 61.729 60.000 0.00 0.00 0.00 3.10
1650 1802 3.888930 CCAGTTTGAAGGCTTCTTTGGTA 59.111 43.478 26.26 3.70 0.00 3.25
1666 1818 1.377725 CATGCGCTCCCTCCAGTTT 60.378 57.895 9.73 0.00 0.00 2.66
1770 1928 4.505390 CCCAAATTGGATTTTCAGGCAACT 60.505 41.667 14.62 0.00 46.45 3.16
1784 1942 4.519540 AAAATCGACTGACCCAAATTGG 57.480 40.909 4.74 4.74 37.25 3.16
1809 1967 3.827876 TCTTGAAGCAGAAATCAATGGCA 59.172 39.130 0.00 0.00 35.20 4.92
1883 2042 4.766375 ACCGTGGTCAGTAGAATATTTGG 58.234 43.478 0.00 0.00 0.00 3.28
1893 2052 0.838608 ACCCAAAACCGTGGTCAGTA 59.161 50.000 0.00 0.00 36.90 2.74
1919 2078 8.788325 ACATCGGCCTATAAGGAATAATAAAC 57.212 34.615 0.00 0.00 37.67 2.01
1929 2088 2.550830 AGCAACATCGGCCTATAAGG 57.449 50.000 0.00 0.00 38.80 2.69
1931 2090 2.438021 AGGAAGCAACATCGGCCTATAA 59.562 45.455 0.00 0.00 0.00 0.98
1932 2091 2.037251 GAGGAAGCAACATCGGCCTATA 59.963 50.000 0.00 0.00 0.00 1.31
1968 2153 8.370182 TGCATATATACACATGTTGAGTCATCT 58.630 33.333 0.00 0.00 0.00 2.90
1969 2154 8.538409 TGCATATATACACATGTTGAGTCATC 57.462 34.615 0.00 0.00 0.00 2.92
1973 2158 9.830975 TTACTTGCATATATACACATGTTGAGT 57.169 29.630 0.00 0.00 0.00 3.41
1995 2238 8.960064 ACTCCCTCCATTCCAAAATATATTACT 58.040 33.333 0.00 0.00 0.00 2.24
2003 2246 7.836183 GCATATATACTCCCTCCATTCCAAAAT 59.164 37.037 0.00 0.00 0.00 1.82
2004 2247 7.175104 GCATATATACTCCCTCCATTCCAAAA 58.825 38.462 0.00 0.00 0.00 2.44
2005 2248 6.274436 TGCATATATACTCCCTCCATTCCAAA 59.726 38.462 0.00 0.00 0.00 3.28
2006 2249 5.790096 TGCATATATACTCCCTCCATTCCAA 59.210 40.000 0.00 0.00 0.00 3.53
2007 2250 5.349690 TGCATATATACTCCCTCCATTCCA 58.650 41.667 0.00 0.00 0.00 3.53
2008 2251 5.957771 TGCATATATACTCCCTCCATTCC 57.042 43.478 0.00 0.00 0.00 3.01
2009 2252 6.951971 ACTTGCATATATACTCCCTCCATTC 58.048 40.000 0.00 0.00 0.00 2.67
2010 2253 6.959606 ACTTGCATATATACTCCCTCCATT 57.040 37.500 0.00 0.00 0.00 3.16
2011 2254 8.489489 CATTACTTGCATATATACTCCCTCCAT 58.511 37.037 0.00 0.00 0.00 3.41
2012 2255 7.457852 ACATTACTTGCATATATACTCCCTCCA 59.542 37.037 0.00 0.00 0.00 3.86
2013 2256 7.852263 ACATTACTTGCATATATACTCCCTCC 58.148 38.462 0.00 0.00 0.00 4.30
2114 2357 7.074653 ACCTCGGTACCAAAATATCATATGT 57.925 36.000 13.54 0.00 0.00 2.29
2115 2358 8.311836 ACTACCTCGGTACCAAAATATCATATG 58.688 37.037 13.54 0.00 0.00 1.78
2116 2359 8.431910 ACTACCTCGGTACCAAAATATCATAT 57.568 34.615 13.54 0.00 0.00 1.78
2117 2360 7.844493 ACTACCTCGGTACCAAAATATCATA 57.156 36.000 13.54 0.00 0.00 2.15
2118 2361 6.742559 ACTACCTCGGTACCAAAATATCAT 57.257 37.500 13.54 0.00 0.00 2.45
2133 2376 4.959596 TTTGCACTCTAGTACTACCTCG 57.040 45.455 0.00 0.00 0.00 4.63
2251 2494 1.967319 AGTGGCATTGCTATTACCCG 58.033 50.000 8.82 0.00 0.00 5.28
2424 2669 8.310382 TGCACATAGTTTGCATAAAAATTAGGT 58.690 29.630 0.00 0.00 45.06 3.08
2496 2741 6.655078 AGGGCATTGCTATTACCATTTAAG 57.345 37.500 8.82 0.00 0.00 1.85
2757 3002 9.987272 CCATTGAAGAGGAAAGAAAATAAAACT 57.013 29.630 0.00 0.00 0.00 2.66
2818 3065 9.928236 GCACTTTTTAAAAATATGCAAGAACAA 57.072 25.926 28.25 3.27 38.62 2.83
3013 3262 0.742505 ATGAATCAGCGGCATTGGTG 59.257 50.000 1.45 0.00 38.68 4.17
3099 3348 7.448469 AGGATGAATTAGTGGCATTGGTATTAC 59.552 37.037 0.00 0.00 0.00 1.89
3149 3398 6.718454 TGGTACGGAGGGAGTAATAGATAAAG 59.282 42.308 0.00 0.00 0.00 1.85
3161 3410 2.423577 CTTGTTTTGGTACGGAGGGAG 58.576 52.381 0.00 0.00 0.00 4.30
3162 3411 1.543871 GCTTGTTTTGGTACGGAGGGA 60.544 52.381 0.00 0.00 0.00 4.20
3163 3412 0.879090 GCTTGTTTTGGTACGGAGGG 59.121 55.000 0.00 0.00 0.00 4.30
3164 3413 0.515564 CGCTTGTTTTGGTACGGAGG 59.484 55.000 0.00 0.00 0.00 4.30
3165 3414 1.193874 GTCGCTTGTTTTGGTACGGAG 59.806 52.381 0.00 0.00 0.00 4.63
3166 3415 1.202557 AGTCGCTTGTTTTGGTACGGA 60.203 47.619 0.00 0.00 0.00 4.69
3167 3416 1.193874 GAGTCGCTTGTTTTGGTACGG 59.806 52.381 0.00 0.00 0.00 4.02
3168 3417 1.136721 CGAGTCGCTTGTTTTGGTACG 60.137 52.381 0.00 0.00 0.00 3.67
3169 3418 2.097056 GTCGAGTCGCTTGTTTTGGTAC 60.097 50.000 7.92 0.00 0.00 3.34
3170 3419 2.129607 GTCGAGTCGCTTGTTTTGGTA 58.870 47.619 7.92 0.00 0.00 3.25
3171 3420 0.935196 GTCGAGTCGCTTGTTTTGGT 59.065 50.000 7.92 0.00 0.00 3.67
3172 3421 0.934496 TGTCGAGTCGCTTGTTTTGG 59.066 50.000 7.92 0.00 0.00 3.28
3173 3422 2.949714 ATGTCGAGTCGCTTGTTTTG 57.050 45.000 7.92 0.00 0.00 2.44
3174 3423 2.612212 ACAATGTCGAGTCGCTTGTTTT 59.388 40.909 16.91 1.39 0.00 2.43
3175 3424 2.210116 ACAATGTCGAGTCGCTTGTTT 58.790 42.857 16.91 2.52 0.00 2.83
3176 3425 1.865865 ACAATGTCGAGTCGCTTGTT 58.134 45.000 16.91 4.88 0.00 2.83
3177 3426 2.030185 AGTACAATGTCGAGTCGCTTGT 60.030 45.455 22.47 22.47 34.63 3.16
3178 3427 2.596452 AGTACAATGTCGAGTCGCTTG 58.404 47.619 7.92 13.17 0.00 4.01
3179 3428 4.082895 AGTTAGTACAATGTCGAGTCGCTT 60.083 41.667 7.92 0.00 0.00 4.68
3180 3429 3.439476 AGTTAGTACAATGTCGAGTCGCT 59.561 43.478 7.92 0.00 0.00 4.93
3181 3430 3.756069 AGTTAGTACAATGTCGAGTCGC 58.244 45.455 7.92 3.74 0.00 5.19
3182 3431 5.628193 ACAAAGTTAGTACAATGTCGAGTCG 59.372 40.000 6.09 6.09 0.00 4.18
3183 3432 7.806960 AGTACAAAGTTAGTACAATGTCGAGTC 59.193 37.037 6.30 0.00 43.24 3.36
3184 3433 7.655490 AGTACAAAGTTAGTACAATGTCGAGT 58.345 34.615 6.30 0.00 43.24 4.18
3185 3434 9.616634 TTAGTACAAAGTTAGTACAATGTCGAG 57.383 33.333 6.30 0.00 43.24 4.04
3186 3435 9.964303 TTTAGTACAAAGTTAGTACAATGTCGA 57.036 29.630 6.30 0.00 43.24 4.20
3211 3460 9.662947 ACTCAACTTTGTACTTTGTACTAACTT 57.337 29.630 8.94 1.96 0.00 2.66
3212 3461 9.310716 GACTCAACTTTGTACTTTGTACTAACT 57.689 33.333 8.94 0.00 0.00 2.24
3213 3462 9.090692 TGACTCAACTTTGTACTTTGTACTAAC 57.909 33.333 8.94 0.00 0.00 2.34
3214 3463 9.090692 GTGACTCAACTTTGTACTTTGTACTAA 57.909 33.333 8.94 6.91 0.00 2.24
3215 3464 8.472413 AGTGACTCAACTTTGTACTTTGTACTA 58.528 33.333 8.94 0.00 0.00 1.82
3216 3465 7.328737 AGTGACTCAACTTTGTACTTTGTACT 58.671 34.615 8.94 0.00 0.00 2.73
3217 3466 7.535489 AGTGACTCAACTTTGTACTTTGTAC 57.465 36.000 0.00 1.33 0.00 2.90
3218 3467 9.826574 ATAAGTGACTCAACTTTGTACTTTGTA 57.173 29.630 0.00 0.00 40.77 2.41
3219 3468 8.732746 ATAAGTGACTCAACTTTGTACTTTGT 57.267 30.769 0.00 0.00 40.77 2.83
3223 3472 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3224 3473 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3225 3474 7.013846 CCCCAAAATAAGTGACTCAACTTTGTA 59.986 37.037 0.00 0.00 40.77 2.41
3226 3475 6.183360 CCCCAAAATAAGTGACTCAACTTTGT 60.183 38.462 0.00 0.00 40.77 2.83
3227 3476 6.215845 CCCCAAAATAAGTGACTCAACTTTG 58.784 40.000 0.00 0.00 40.77 2.77
3228 3477 5.221441 GCCCCAAAATAAGTGACTCAACTTT 60.221 40.000 0.00 0.00 40.77 2.66
3229 3478 4.280929 GCCCCAAAATAAGTGACTCAACTT 59.719 41.667 0.00 0.00 42.89 2.66
3230 3479 3.826729 GCCCCAAAATAAGTGACTCAACT 59.173 43.478 0.00 0.00 0.00 3.16
3231 3480 3.365969 CGCCCCAAAATAAGTGACTCAAC 60.366 47.826 0.00 0.00 0.00 3.18
3232 3481 2.817258 CGCCCCAAAATAAGTGACTCAA 59.183 45.455 0.00 0.00 0.00 3.02
3233 3482 2.432444 CGCCCCAAAATAAGTGACTCA 58.568 47.619 0.00 0.00 0.00 3.41
3234 3483 1.743394 CCGCCCCAAAATAAGTGACTC 59.257 52.381 0.00 0.00 0.00 3.36
3235 3484 1.353022 TCCGCCCCAAAATAAGTGACT 59.647 47.619 0.00 0.00 0.00 3.41
3236 3485 1.743394 CTCCGCCCCAAAATAAGTGAC 59.257 52.381 0.00 0.00 0.00 3.67
3237 3486 1.340600 CCTCCGCCCCAAAATAAGTGA 60.341 52.381 0.00 0.00 0.00 3.41
3238 3487 1.102978 CCTCCGCCCCAAAATAAGTG 58.897 55.000 0.00 0.00 0.00 3.16
3239 3488 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.000 0.00 0.00 0.00 2.24
3240 3489 0.257616 TCCCTCCGCCCCAAAATAAG 59.742 55.000 0.00 0.00 0.00 1.73
3241 3490 0.257616 CTCCCTCCGCCCCAAAATAA 59.742 55.000 0.00 0.00 0.00 1.40
3242 3491 0.917333 ACTCCCTCCGCCCCAAAATA 60.917 55.000 0.00 0.00 0.00 1.40
3243 3492 0.917333 TACTCCCTCCGCCCCAAAAT 60.917 55.000 0.00 0.00 0.00 1.82
3244 3493 0.917333 ATACTCCCTCCGCCCCAAAA 60.917 55.000 0.00 0.00 0.00 2.44
3245 3494 0.030909 TATACTCCCTCCGCCCCAAA 60.031 55.000 0.00 0.00 0.00 3.28
3246 3495 0.192566 ATATACTCCCTCCGCCCCAA 59.807 55.000 0.00 0.00 0.00 4.12
3247 3496 0.192566 AATATACTCCCTCCGCCCCA 59.807 55.000 0.00 0.00 0.00 4.96
3248 3497 0.903236 GAATATACTCCCTCCGCCCC 59.097 60.000 0.00 0.00 0.00 5.80
3249 3498 1.939980 AGAATATACTCCCTCCGCCC 58.060 55.000 0.00 0.00 0.00 6.13
3250 3499 4.087907 AGTAAGAATATACTCCCTCCGCC 58.912 47.826 0.00 0.00 30.26 6.13
3251 3500 5.313520 GAGTAAGAATATACTCCCTCCGC 57.686 47.826 3.62 0.00 43.88 5.54
3292 3542 7.089770 TGCACACAGTTTACACAGAAATTAA 57.910 32.000 0.00 0.00 0.00 1.40
3442 3693 9.893305 AGTTTTCATAATAAAGAAGTTTCCACG 57.107 29.630 0.00 0.00 0.00 4.94
3832 4124 5.012328 AGTCTCGCAAGGACTTAATTAGG 57.988 43.478 0.00 0.00 42.59 2.69
3946 4281 9.860898 AGAATAGAAATTGTGGCTGAATAAAAC 57.139 29.630 0.00 0.00 0.00 2.43
3953 4288 7.707624 ATGAAAGAATAGAAATTGTGGCTGA 57.292 32.000 0.00 0.00 0.00 4.26
4176 4515 8.215050 TCAACTACCAAACCGATATATCCAAAT 58.785 33.333 7.15 0.00 0.00 2.32
4218 4562 6.959671 ATAACCGCAAACCACAAATAATTG 57.040 33.333 0.00 0.00 42.46 2.32
4248 4594 9.370930 TGAATGAATGCAAAGGGATATAGAAAT 57.629 29.630 0.00 0.00 0.00 2.17
4379 4729 4.755123 TGCAACTAGCCAAAAACTACTCTC 59.245 41.667 0.00 0.00 44.83 3.20
4450 4800 7.059788 TCGGGATTGAAAAATCAGAATATCCA 58.940 34.615 0.00 0.00 33.58 3.41
4455 4805 6.830324 TGATCTCGGGATTGAAAAATCAGAAT 59.170 34.615 0.00 0.00 31.46 2.40
4458 4808 6.094603 ACTTGATCTCGGGATTGAAAAATCAG 59.905 38.462 0.00 0.00 31.46 2.90
4459 4809 5.945784 ACTTGATCTCGGGATTGAAAAATCA 59.054 36.000 0.00 0.00 31.46 2.57
4460 4810 6.442513 ACTTGATCTCGGGATTGAAAAATC 57.557 37.500 0.00 0.00 31.46 2.17
4461 4811 5.358160 GGACTTGATCTCGGGATTGAAAAAT 59.642 40.000 0.00 0.00 31.46 1.82
4462 4812 4.700213 GGACTTGATCTCGGGATTGAAAAA 59.300 41.667 0.00 0.00 31.46 1.94
4463 4813 4.019321 AGGACTTGATCTCGGGATTGAAAA 60.019 41.667 0.00 0.00 31.46 2.29
4464 4814 3.519510 AGGACTTGATCTCGGGATTGAAA 59.480 43.478 0.00 0.00 31.46 2.69
4465 4815 3.107601 AGGACTTGATCTCGGGATTGAA 58.892 45.455 0.00 0.00 31.46 2.69
4466 4816 2.695666 GAGGACTTGATCTCGGGATTGA 59.304 50.000 0.00 0.00 31.46 2.57
4467 4817 2.224161 GGAGGACTTGATCTCGGGATTG 60.224 54.545 0.00 0.00 31.46 2.67
4468 4818 2.043227 GGAGGACTTGATCTCGGGATT 58.957 52.381 0.00 0.00 31.46 3.01
4469 4819 1.219213 AGGAGGACTTGATCTCGGGAT 59.781 52.381 0.00 0.00 34.45 3.85
4470 4820 0.631753 AGGAGGACTTGATCTCGGGA 59.368 55.000 0.00 0.00 0.00 5.14
4471 4821 1.957877 GTAGGAGGACTTGATCTCGGG 59.042 57.143 0.00 0.00 0.00 5.14
4472 4822 2.656002 TGTAGGAGGACTTGATCTCGG 58.344 52.381 0.00 0.00 0.00 4.63
4473 4823 3.005261 CCATGTAGGAGGACTTGATCTCG 59.995 52.174 0.00 0.00 41.22 4.04
4474 4824 3.244044 GCCATGTAGGAGGACTTGATCTC 60.244 52.174 0.00 0.00 41.22 2.75
4475 4825 2.703007 GCCATGTAGGAGGACTTGATCT 59.297 50.000 0.00 0.00 41.22 2.75
4476 4826 2.546795 CGCCATGTAGGAGGACTTGATC 60.547 54.545 0.00 0.00 41.22 2.92
4477 4827 1.414181 CGCCATGTAGGAGGACTTGAT 59.586 52.381 0.00 0.00 41.22 2.57
4478 4828 0.824109 CGCCATGTAGGAGGACTTGA 59.176 55.000 0.00 0.00 41.22 3.02
4479 4829 0.811616 GCGCCATGTAGGAGGACTTG 60.812 60.000 0.00 0.00 41.22 3.16
4480 4830 1.264749 TGCGCCATGTAGGAGGACTT 61.265 55.000 4.18 0.00 41.22 3.01
4481 4831 1.685765 TGCGCCATGTAGGAGGACT 60.686 57.895 4.18 0.00 41.22 3.85
4486 5941 2.584064 CAGGTGCGCCATGTAGGA 59.416 61.111 20.59 0.00 41.22 2.94
4487 5942 3.204827 GCAGGTGCGCCATGTAGG 61.205 66.667 20.59 1.46 41.84 3.18
4497 5952 2.417787 GGGATTGAAATTCAGCAGGTGC 60.418 50.000 0.00 0.00 42.49 5.01
4506 5961 4.578105 AGAAGCATCTCGGGATTGAAATTC 59.422 41.667 0.00 0.00 0.00 2.17
4515 5970 1.667154 CGGACAGAAGCATCTCGGGA 61.667 60.000 0.00 0.00 32.03 5.14
4545 6000 1.005156 GGCCTCGGAGATGAGATGC 60.005 63.158 6.58 0.00 38.28 3.91
4551 6006 3.554716 TCCATGGCCTCGGAGATG 58.445 61.111 6.96 2.45 33.89 2.90
4560 6015 0.842635 ACTTGATCTCCTCCATGGCC 59.157 55.000 6.96 0.00 35.26 5.36
4572 6027 4.315803 TCGACAAAAAGGAGGACTTGATC 58.684 43.478 0.00 0.00 39.96 2.92
4588 6043 1.792367 CAACTCATGCTCGTTCGACAA 59.208 47.619 0.00 0.00 0.00 3.18
4589 6044 1.000717 TCAACTCATGCTCGTTCGACA 60.001 47.619 0.00 0.00 0.00 4.35
4591 6046 1.982612 CTCAACTCATGCTCGTTCGA 58.017 50.000 0.00 0.00 0.00 3.71
4593 6048 0.723981 GGCTCAACTCATGCTCGTTC 59.276 55.000 0.00 0.00 0.00 3.95
4596 6051 1.159285 TTTGGCTCAACTCATGCTCG 58.841 50.000 0.00 0.00 0.00 5.03
4597 6052 3.254166 TCTTTTTGGCTCAACTCATGCTC 59.746 43.478 0.00 0.00 0.00 4.26
4599 6054 3.572584 CTCTTTTTGGCTCAACTCATGC 58.427 45.455 0.00 0.00 0.00 4.06
4600 6055 3.005050 TGCTCTTTTTGGCTCAACTCATG 59.995 43.478 0.00 0.00 0.00 3.07
4603 6058 3.375642 GTTGCTCTTTTTGGCTCAACTC 58.624 45.455 0.00 0.00 33.21 3.01
4605 6060 2.473816 GGTTGCTCTTTTTGGCTCAAC 58.526 47.619 0.00 0.00 34.68 3.18
4650 6105 0.321122 CTGACTTGTGCTCACCCTCC 60.321 60.000 0.00 0.00 0.00 4.30
4659 6114 0.524862 CTCCATTGGCTGACTTGTGC 59.475 55.000 0.00 0.00 0.00 4.57
4670 6125 3.066342 GCTTGTGTCATCATCTCCATTGG 59.934 47.826 0.00 0.00 0.00 3.16
4671 6126 3.066342 GGCTTGTGTCATCATCTCCATTG 59.934 47.826 0.00 0.00 0.00 2.82
4678 6133 2.440409 ACCTTGGCTTGTGTCATCATC 58.560 47.619 0.00 0.00 0.00 2.92
4728 6183 1.871126 GCTCCAACAGCTCTTTGGCC 61.871 60.000 16.14 0.00 45.83 5.36
4757 6212 0.872021 GAGCATCCACCGCGTCTTAG 60.872 60.000 4.92 0.00 0.00 2.18
4767 6222 0.532862 CCCGGTACATGAGCATCCAC 60.533 60.000 0.00 0.00 0.00 4.02
4807 6262 3.807538 GCACATGCTGGCGGAGTG 61.808 66.667 0.00 3.48 38.21 3.51
4880 6335 3.200593 GCATGAGCACGAGCCAGG 61.201 66.667 0.00 2.52 43.56 4.45
4919 6374 1.082104 GGCGTTTGAAGCTTGTCGG 60.082 57.895 2.10 0.00 34.52 4.79
4955 6410 5.873179 TGGTCGAATTACCAGAAAATCAC 57.127 39.130 0.00 0.00 44.68 3.06
4965 6982 2.812011 AGCACACTTTGGTCGAATTACC 59.188 45.455 0.00 0.00 40.19 2.85
4977 6994 4.020662 TGGTTTCTTTTTCCAGCACACTTT 60.021 37.500 0.00 0.00 0.00 2.66
5048 7315 5.312079 ACCTTTTCTCTTCTTCATCACCTG 58.688 41.667 0.00 0.00 0.00 4.00
5050 7317 5.352846 GCTACCTTTTCTCTTCTTCATCACC 59.647 44.000 0.00 0.00 0.00 4.02
5051 7318 6.169800 AGCTACCTTTTCTCTTCTTCATCAC 58.830 40.000 0.00 0.00 0.00 3.06
5068 7335 7.039784 TGCTGTTAATTTTCATTTGAGCTACCT 60.040 33.333 0.00 0.00 0.00 3.08
5070 7337 7.809806 AGTGCTGTTAATTTTCATTTGAGCTAC 59.190 33.333 0.00 0.00 0.00 3.58
5071 7338 7.885297 AGTGCTGTTAATTTTCATTTGAGCTA 58.115 30.769 0.00 0.00 0.00 3.32
5089 7356 1.002544 GCTTGGTAGAGGAAGTGCTGT 59.997 52.381 0.00 0.00 0.00 4.40
5113 7380 3.943381 TGAATTGAAGCTGCATCGATCTT 59.057 39.130 7.97 0.00 0.00 2.40
5137 7404 6.814644 CGTACATTGTTCTTTGATACCCAGTA 59.185 38.462 0.00 0.00 0.00 2.74
5234 7501 7.344095 ACCTTACGTGTACTGATTAGCTAAT 57.656 36.000 18.92 18.92 0.00 1.73
5321 7599 0.250793 AGAGAAGAGACGAGGCGAGA 59.749 55.000 0.00 0.00 0.00 4.04
5465 7837 4.721776 AGAGATACCCTTTCTGTGGCATAA 59.278 41.667 0.00 0.00 0.00 1.90
5466 7838 4.298626 AGAGATACCCTTTCTGTGGCATA 58.701 43.478 0.00 0.00 0.00 3.14
5621 7997 1.944709 CATGCATGCTAACTGCTGCTA 59.055 47.619 20.33 0.00 42.28 3.49
5665 8041 8.764287 CATGTTCAGTTTTAAAAACCTTGGATC 58.236 33.333 1.31 0.00 0.00 3.36
5685 8061 6.647067 ACAGCAGTAGTTTTCTAGACATGTTC 59.353 38.462 0.00 0.00 32.55 3.18
5821 8197 2.969628 AGCACATGTAGGTGAGTAGC 57.030 50.000 0.00 0.00 41.32 3.58
5827 8203 2.086869 CAAGGGAAGCACATGTAGGTG 58.913 52.381 0.00 0.00 41.72 4.00
5846 8222 7.939782 TGTTTAGTCAGATGAAGAAAAATGCA 58.060 30.769 0.00 0.00 0.00 3.96
5862 8238 4.811969 TTTAGCCGATCCTGTTTAGTCA 57.188 40.909 0.00 0.00 0.00 3.41
5875 8251 8.786826 TTTTCTTCTTCTGAATATTTAGCCGA 57.213 30.769 2.39 0.00 0.00 5.54
5903 8279 4.585879 ACAAAATAGAACCCGCATACACT 58.414 39.130 0.00 0.00 0.00 3.55
5951 8327 2.541346 CAGCATCGTGTATAGCAAGTGG 59.459 50.000 0.00 0.00 0.00 4.00
6026 8402 3.242944 GCGCTTGTTTTTCTTCTTTGTCC 59.757 43.478 0.00 0.00 0.00 4.02
6047 8423 3.285484 ACATTCATCTCATGGAACCTGC 58.715 45.455 0.00 0.00 0.00 4.85
6057 8433 7.482169 ACTGGTAAGTTCTACATTCATCTCA 57.518 36.000 0.00 0.00 30.14 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.