Multiple sequence alignment - TraesCS1B01G445200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G445200 chr1B 100.000 6293 0 0 1 6293 665315383 665309091 0.000000e+00 11622
1 TraesCS1B01G445200 chr1A 91.711 5453 255 91 234 5537 574341528 574336124 0.000000e+00 7384
2 TraesCS1B01G445200 chr1A 88.626 422 22 9 5632 6051 574335759 574335362 2.040000e-134 490
3 TraesCS1B01G445200 chr1A 90.000 110 11 0 5525 5634 574335915 574335806 6.580000e-30 143
4 TraesCS1B01G445200 chr1D 91.380 5429 240 82 314 5634 478126222 478120914 0.000000e+00 7223
5 TraesCS1B01G445200 chr1D 84.161 423 36 14 5640 6052 478120860 478120459 1.280000e-101 381


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G445200 chr1B 665309091 665315383 6292 True 11622.000000 11622 100.000000 1 6293 1 chr1B.!!$R1 6292
1 TraesCS1B01G445200 chr1A 574335362 574341528 6166 True 2672.333333 7384 90.112333 234 6051 3 chr1A.!!$R1 5817
2 TraesCS1B01G445200 chr1D 478120459 478126222 5763 True 3802.000000 7223 87.770500 314 6052 2 chr1D.!!$R1 5738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.034476 TCTGACAAGTGCCAGCTGAG 59.966 55.0 17.39 6.56 0.00 3.35 F
399 404 0.042281 GGGGAGGGTAGTACCACTGT 59.958 60.0 20.97 2.18 41.02 3.55 F
706 739 0.104855 ACACACGCAGCAGAAGAGAA 59.895 50.0 0.00 0.00 0.00 2.87 F
828 861 0.393077 GCTCCTGCGGGCTAAAGATA 59.607 55.0 6.73 0.00 0.00 1.98 F
2777 2892 0.326264 AGCAAGTGGAAGGCCTACAG 59.674 55.0 5.16 0.00 34.31 2.74 F
2870 2985 0.391130 GCAACTACCAGACGCCATCA 60.391 55.0 0.00 0.00 0.00 3.07 F
3464 3579 0.400594 AGAGGTTTGGTGGTGGCTAC 59.599 55.0 0.00 0.00 0.00 3.58 F
4958 5134 0.035317 TGCAGATCAAACTGGCGTCT 59.965 50.0 0.00 0.00 38.22 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1747 0.107752 CCTGCAGCTTCTTCCTCTCC 60.108 60.000 8.66 0.00 0.00 3.71 R
1974 2029 0.749649 CCATGAGGTCCCTCTTCTCG 59.250 60.000 14.20 0.00 43.12 4.04 R
2518 2574 0.888285 AAAGCACCTCAGCTGACTGC 60.888 55.000 24.99 24.99 45.89 4.40 R
2798 2913 0.391793 GCAGGTACACCAGCTCTTCC 60.392 60.000 8.41 0.00 44.12 3.46 R
4391 4507 0.107993 TGCTCTCTGGCCAATCGAAG 60.108 55.000 7.01 1.19 0.00 3.79 R
4431 4547 1.480954 GTCCTGATACTCAAAGGCGGA 59.519 52.381 0.00 0.00 0.00 5.54 R
5283 5459 0.452184 AGACTCCGCACTATGTGTCG 59.548 55.000 0.00 4.12 35.75 4.35 R
6173 6650 0.040499 GGTGGGCTGGTTTAATGGGA 59.960 55.000 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.868026 CGATAATGGGTTCGGGCA 57.132 55.556 0.00 0.00 0.00 5.36
25 26 3.088259 CGATAATGGGTTCGGGCAA 57.912 52.632 0.00 0.00 0.00 4.52
26 27 1.604604 CGATAATGGGTTCGGGCAAT 58.395 50.000 0.00 0.00 0.00 3.56
27 28 1.535462 CGATAATGGGTTCGGGCAATC 59.465 52.381 0.00 0.00 0.00 2.67
28 29 2.582052 GATAATGGGTTCGGGCAATCA 58.418 47.619 0.00 0.00 0.00 2.57
29 30 1.757682 TAATGGGTTCGGGCAATCAC 58.242 50.000 0.00 0.00 0.00 3.06
30 31 0.970427 AATGGGTTCGGGCAATCACC 60.970 55.000 0.00 0.00 0.00 4.02
37 38 2.990479 GGGCAATCACCGGAGACT 59.010 61.111 9.46 0.00 0.00 3.24
38 39 1.299976 GGGCAATCACCGGAGACTT 59.700 57.895 9.46 0.00 0.00 3.01
39 40 0.744771 GGGCAATCACCGGAGACTTC 60.745 60.000 9.46 0.00 0.00 3.01
40 41 0.036388 GGCAATCACCGGAGACTTCA 60.036 55.000 9.46 0.00 0.00 3.02
41 42 1.363744 GCAATCACCGGAGACTTCAG 58.636 55.000 9.46 0.00 0.00 3.02
42 43 2.009042 GCAATCACCGGAGACTTCAGG 61.009 57.143 9.46 0.00 43.48 3.86
43 44 0.250513 AATCACCGGAGACTTCAGGC 59.749 55.000 9.46 0.00 41.81 4.85
44 45 1.617947 ATCACCGGAGACTTCAGGCC 61.618 60.000 9.46 0.00 41.81 5.19
45 46 3.003763 ACCGGAGACTTCAGGCCC 61.004 66.667 9.46 0.00 41.81 5.80
46 47 2.685380 CCGGAGACTTCAGGCCCT 60.685 66.667 0.00 0.00 31.83 5.19
47 48 2.581354 CGGAGACTTCAGGCCCTG 59.419 66.667 3.69 3.69 0.00 4.45
48 49 2.270527 GGAGACTTCAGGCCCTGC 59.729 66.667 5.66 0.00 0.00 4.85
49 50 2.596851 GGAGACTTCAGGCCCTGCA 61.597 63.158 5.66 0.00 0.00 4.41
50 51 1.376466 GAGACTTCAGGCCCTGCAA 59.624 57.895 5.66 0.61 0.00 4.08
51 52 0.250901 GAGACTTCAGGCCCTGCAAA 60.251 55.000 5.66 0.00 0.00 3.68
52 53 0.407139 AGACTTCAGGCCCTGCAAAT 59.593 50.000 5.66 0.00 0.00 2.32
53 54 1.635487 AGACTTCAGGCCCTGCAAATA 59.365 47.619 5.66 0.00 0.00 1.40
54 55 2.243221 AGACTTCAGGCCCTGCAAATAT 59.757 45.455 5.66 0.00 0.00 1.28
55 56 3.459598 AGACTTCAGGCCCTGCAAATATA 59.540 43.478 5.66 0.00 0.00 0.86
56 57 3.555966 ACTTCAGGCCCTGCAAATATAC 58.444 45.455 5.66 0.00 0.00 1.47
57 58 3.053693 ACTTCAGGCCCTGCAAATATACA 60.054 43.478 5.66 0.00 0.00 2.29
58 59 2.930950 TCAGGCCCTGCAAATATACAC 58.069 47.619 5.66 0.00 0.00 2.90
59 60 2.509548 TCAGGCCCTGCAAATATACACT 59.490 45.455 5.66 0.00 0.00 3.55
60 61 2.620115 CAGGCCCTGCAAATATACACTG 59.380 50.000 0.00 0.00 0.00 3.66
61 62 1.956477 GGCCCTGCAAATATACACTGG 59.044 52.381 0.00 0.00 0.00 4.00
62 63 1.338020 GCCCTGCAAATATACACTGGC 59.662 52.381 0.00 0.00 0.00 4.85
63 64 2.936202 CCCTGCAAATATACACTGGCT 58.064 47.619 0.00 0.00 0.00 4.75
64 65 2.620115 CCCTGCAAATATACACTGGCTG 59.380 50.000 0.00 0.00 0.00 4.85
65 66 3.282021 CCTGCAAATATACACTGGCTGT 58.718 45.455 0.00 0.00 36.82 4.40
77 78 3.508845 ACTGGCTGTGACAGGTTAAAT 57.491 42.857 15.24 0.00 44.18 1.40
78 79 3.412386 ACTGGCTGTGACAGGTTAAATC 58.588 45.455 15.24 0.00 44.18 2.17
79 80 3.181445 ACTGGCTGTGACAGGTTAAATCA 60.181 43.478 15.24 0.00 44.18 2.57
80 81 3.411446 TGGCTGTGACAGGTTAAATCAG 58.589 45.455 15.24 0.00 31.21 2.90
81 82 3.181445 TGGCTGTGACAGGTTAAATCAGT 60.181 43.478 15.24 0.00 31.21 3.41
82 83 4.041075 TGGCTGTGACAGGTTAAATCAGTA 59.959 41.667 15.24 0.00 31.21 2.74
83 84 4.631813 GGCTGTGACAGGTTAAATCAGTAG 59.368 45.833 15.24 0.00 31.21 2.57
84 85 5.238583 GCTGTGACAGGTTAAATCAGTAGT 58.761 41.667 15.24 0.00 31.21 2.73
85 86 6.395629 GCTGTGACAGGTTAAATCAGTAGTA 58.604 40.000 15.24 0.00 31.21 1.82
86 87 6.872020 GCTGTGACAGGTTAAATCAGTAGTAA 59.128 38.462 15.24 0.00 31.21 2.24
87 88 7.063544 GCTGTGACAGGTTAAATCAGTAGTAAG 59.936 40.741 15.24 0.00 31.21 2.34
88 89 7.959175 TGTGACAGGTTAAATCAGTAGTAAGT 58.041 34.615 0.00 0.00 0.00 2.24
89 90 9.081204 TGTGACAGGTTAAATCAGTAGTAAGTA 57.919 33.333 0.00 0.00 0.00 2.24
90 91 9.570488 GTGACAGGTTAAATCAGTAGTAAGTAG 57.430 37.037 0.00 0.00 0.00 2.57
91 92 9.305555 TGACAGGTTAAATCAGTAGTAAGTAGT 57.694 33.333 0.00 0.00 0.00 2.73
102 103 8.970859 TCAGTAGTAAGTAGTAGTAATGACCC 57.029 38.462 0.00 0.00 37.64 4.46
103 104 8.551440 TCAGTAGTAAGTAGTAGTAATGACCCA 58.449 37.037 0.00 0.00 37.64 4.51
104 105 9.182214 CAGTAGTAAGTAGTAGTAATGACCCAA 57.818 37.037 0.00 0.00 36.29 4.12
105 106 9.183368 AGTAGTAAGTAGTAGTAATGACCCAAC 57.817 37.037 0.00 0.00 0.00 3.77
106 107 9.183368 GTAGTAAGTAGTAGTAATGACCCAACT 57.817 37.037 0.00 0.00 0.00 3.16
107 108 8.291191 AGTAAGTAGTAGTAATGACCCAACTC 57.709 38.462 0.00 0.00 0.00 3.01
108 109 7.892241 AGTAAGTAGTAGTAATGACCCAACTCA 59.108 37.037 0.00 0.00 0.00 3.41
109 110 7.735326 AAGTAGTAGTAATGACCCAACTCAT 57.265 36.000 0.00 0.00 31.84 2.90
110 111 7.349412 AGTAGTAGTAATGACCCAACTCATC 57.651 40.000 0.00 0.00 30.12 2.92
111 112 6.895756 AGTAGTAGTAATGACCCAACTCATCA 59.104 38.462 0.00 0.00 30.12 3.07
112 113 6.620877 AGTAGTAATGACCCAACTCATCAA 57.379 37.500 0.00 0.00 30.12 2.57
113 114 7.200434 AGTAGTAATGACCCAACTCATCAAT 57.800 36.000 0.00 0.00 30.12 2.57
114 115 7.633789 AGTAGTAATGACCCAACTCATCAATT 58.366 34.615 0.00 0.00 30.12 2.32
115 116 8.109634 AGTAGTAATGACCCAACTCATCAATTT 58.890 33.333 0.00 0.00 30.12 1.82
116 117 9.391006 GTAGTAATGACCCAACTCATCAATTTA 57.609 33.333 0.00 0.00 30.12 1.40
118 119 9.125026 AGTAATGACCCAACTCATCAATTTATC 57.875 33.333 0.00 0.00 30.12 1.75
119 120 7.959658 AATGACCCAACTCATCAATTTATCA 57.040 32.000 0.00 0.00 30.12 2.15
120 121 7.959658 ATGACCCAACTCATCAATTTATCAA 57.040 32.000 0.00 0.00 0.00 2.57
121 122 7.773489 TGACCCAACTCATCAATTTATCAAA 57.227 32.000 0.00 0.00 0.00 2.69
122 123 8.187913 TGACCCAACTCATCAATTTATCAAAA 57.812 30.769 0.00 0.00 0.00 2.44
123 124 8.306038 TGACCCAACTCATCAATTTATCAAAAG 58.694 33.333 0.00 0.00 0.00 2.27
124 125 8.421249 ACCCAACTCATCAATTTATCAAAAGA 57.579 30.769 0.00 0.00 0.00 2.52
125 126 8.869109 ACCCAACTCATCAATTTATCAAAAGAA 58.131 29.630 0.00 0.00 0.00 2.52
126 127 9.362539 CCCAACTCATCAATTTATCAAAAGAAG 57.637 33.333 0.00 0.00 0.00 2.85
127 128 9.918630 CCAACTCATCAATTTATCAAAAGAAGT 57.081 29.630 0.00 0.00 0.00 3.01
154 155 7.265673 TGAGTATCTTCAAGTACATTACAGGC 58.734 38.462 0.00 0.00 34.92 4.85
155 156 7.093509 TGAGTATCTTCAAGTACATTACAGGCA 60.094 37.037 0.00 0.00 34.92 4.75
156 157 7.620880 AGTATCTTCAAGTACATTACAGGCAA 58.379 34.615 0.00 0.00 0.00 4.52
157 158 6.992063 ATCTTCAAGTACATTACAGGCAAG 57.008 37.500 0.00 0.00 0.00 4.01
158 159 5.865085 TCTTCAAGTACATTACAGGCAAGT 58.135 37.500 0.00 0.00 0.00 3.16
159 160 6.296026 TCTTCAAGTACATTACAGGCAAGTT 58.704 36.000 0.00 0.00 0.00 2.66
160 161 6.770785 TCTTCAAGTACATTACAGGCAAGTTT 59.229 34.615 0.00 0.00 0.00 2.66
161 162 6.554334 TCAAGTACATTACAGGCAAGTTTC 57.446 37.500 0.00 0.00 0.00 2.78
162 163 5.472137 TCAAGTACATTACAGGCAAGTTTCC 59.528 40.000 0.00 0.00 0.00 3.13
163 164 5.242795 AGTACATTACAGGCAAGTTTCCT 57.757 39.130 0.00 0.00 0.00 3.36
173 174 4.530875 AGGCAAGTTTCCTGATTCATAGG 58.469 43.478 0.00 0.00 36.63 2.57
174 175 4.228210 AGGCAAGTTTCCTGATTCATAGGA 59.772 41.667 0.00 0.00 42.43 2.94
175 176 4.336713 GGCAAGTTTCCTGATTCATAGGAC 59.663 45.833 0.00 0.00 43.75 3.85
176 177 5.189180 GCAAGTTTCCTGATTCATAGGACT 58.811 41.667 0.00 0.00 43.75 3.85
177 178 5.649831 GCAAGTTTCCTGATTCATAGGACTT 59.350 40.000 0.00 0.00 43.75 3.01
178 179 6.151817 GCAAGTTTCCTGATTCATAGGACTTT 59.848 38.462 0.00 0.00 43.75 2.66
179 180 7.627300 GCAAGTTTCCTGATTCATAGGACTTTC 60.627 40.741 0.00 0.00 43.75 2.62
180 181 6.418946 AGTTTCCTGATTCATAGGACTTTCC 58.581 40.000 0.00 0.00 43.75 3.13
181 182 6.012508 AGTTTCCTGATTCATAGGACTTTCCA 60.013 38.462 0.00 0.00 43.75 3.53
182 183 6.387192 TTCCTGATTCATAGGACTTTCCAA 57.613 37.500 0.00 0.00 43.75 3.53
183 184 5.745227 TCCTGATTCATAGGACTTTCCAAC 58.255 41.667 0.00 0.00 39.36 3.77
184 185 5.250543 TCCTGATTCATAGGACTTTCCAACA 59.749 40.000 0.00 0.00 39.36 3.33
185 186 5.945784 CCTGATTCATAGGACTTTCCAACAA 59.054 40.000 0.00 0.00 39.61 2.83
186 187 6.434028 CCTGATTCATAGGACTTTCCAACAAA 59.566 38.462 0.00 0.00 39.61 2.83
187 188 7.362401 CCTGATTCATAGGACTTTCCAACAAAG 60.362 40.741 0.00 0.00 39.61 2.77
188 189 7.230747 TGATTCATAGGACTTTCCAACAAAGA 58.769 34.615 1.13 0.00 39.61 2.52
189 190 6.877611 TTCATAGGACTTTCCAACAAAGAC 57.122 37.500 1.13 0.00 39.61 3.01
190 191 5.313712 TCATAGGACTTTCCAACAAAGACC 58.686 41.667 7.30 7.30 39.61 3.85
191 192 3.662759 AGGACTTTCCAACAAAGACCA 57.337 42.857 15.01 0.00 42.03 4.02
192 193 3.976015 AGGACTTTCCAACAAAGACCAA 58.024 40.909 15.01 0.00 42.03 3.67
193 194 4.349365 AGGACTTTCCAACAAAGACCAAA 58.651 39.130 15.01 0.00 42.03 3.28
194 195 4.775253 AGGACTTTCCAACAAAGACCAAAA 59.225 37.500 15.01 0.00 42.03 2.44
195 196 5.247337 AGGACTTTCCAACAAAGACCAAAAA 59.753 36.000 15.01 0.00 42.03 1.94
196 197 5.580691 GGACTTTCCAACAAAGACCAAAAAG 59.419 40.000 9.73 0.00 40.26 2.27
197 198 6.353404 ACTTTCCAACAAAGACCAAAAAGA 57.647 33.333 1.13 0.00 0.00 2.52
198 199 6.163476 ACTTTCCAACAAAGACCAAAAAGAC 58.837 36.000 1.13 0.00 0.00 3.01
199 200 5.730296 TTCCAACAAAGACCAAAAAGACA 57.270 34.783 0.00 0.00 0.00 3.41
200 201 5.323371 TCCAACAAAGACCAAAAAGACAG 57.677 39.130 0.00 0.00 0.00 3.51
201 202 5.013547 TCCAACAAAGACCAAAAAGACAGA 58.986 37.500 0.00 0.00 0.00 3.41
202 203 5.125417 TCCAACAAAGACCAAAAAGACAGAG 59.875 40.000 0.00 0.00 0.00 3.35
203 204 5.105756 CCAACAAAGACCAAAAAGACAGAGT 60.106 40.000 0.00 0.00 0.00 3.24
204 205 6.389906 CAACAAAGACCAAAAAGACAGAGTT 58.610 36.000 0.00 0.00 0.00 3.01
205 206 6.590234 ACAAAGACCAAAAAGACAGAGTTT 57.410 33.333 0.00 0.00 0.00 2.66
206 207 6.621613 ACAAAGACCAAAAAGACAGAGTTTC 58.378 36.000 0.00 0.00 0.00 2.78
207 208 6.434340 ACAAAGACCAAAAAGACAGAGTTTCT 59.566 34.615 0.00 0.00 0.00 2.52
219 220 2.843701 AGAGTTTCTGACAAGTGCCAG 58.156 47.619 0.00 0.00 0.00 4.85
220 221 1.265365 GAGTTTCTGACAAGTGCCAGC 59.735 52.381 0.00 0.00 0.00 4.85
221 222 1.133976 AGTTTCTGACAAGTGCCAGCT 60.134 47.619 0.00 0.00 0.00 4.24
222 223 1.002033 GTTTCTGACAAGTGCCAGCTG 60.002 52.381 6.78 6.78 0.00 4.24
223 224 0.469494 TTCTGACAAGTGCCAGCTGA 59.531 50.000 17.39 0.00 0.00 4.26
224 225 0.034476 TCTGACAAGTGCCAGCTGAG 59.966 55.000 17.39 6.56 0.00 3.35
225 226 0.034476 CTGACAAGTGCCAGCTGAGA 59.966 55.000 17.39 0.00 0.00 3.27
226 227 0.689055 TGACAAGTGCCAGCTGAGAT 59.311 50.000 17.39 0.00 0.00 2.75
227 228 1.072806 TGACAAGTGCCAGCTGAGATT 59.927 47.619 17.39 1.21 0.00 2.40
228 229 1.736681 GACAAGTGCCAGCTGAGATTC 59.263 52.381 17.39 0.78 0.00 2.52
229 230 1.350351 ACAAGTGCCAGCTGAGATTCT 59.650 47.619 17.39 3.24 0.00 2.40
230 231 1.738350 CAAGTGCCAGCTGAGATTCTG 59.262 52.381 17.39 1.20 0.00 3.02
231 232 1.273759 AGTGCCAGCTGAGATTCTGA 58.726 50.000 17.39 0.00 32.26 3.27
232 233 1.627329 AGTGCCAGCTGAGATTCTGAA 59.373 47.619 17.39 0.00 32.26 3.02
238 239 4.034975 GCCAGCTGAGATTCTGAAATACAC 59.965 45.833 17.39 0.00 32.26 2.90
254 255 7.396418 TGAAATACACCTTAGGTAAAATCGGT 58.604 34.615 2.52 0.00 32.11 4.69
256 257 3.853475 ACACCTTAGGTAAAATCGGTCG 58.147 45.455 2.52 0.00 32.11 4.79
305 306 9.952188 TCAGATTAGATACAAAATCACTCGTAG 57.048 33.333 0.00 0.00 35.07 3.51
306 307 9.186323 CAGATTAGATACAAAATCACTCGTAGG 57.814 37.037 0.00 0.00 35.07 3.18
311 312 8.246430 AGATACAAAATCACTCGTAGGGATTA 57.754 34.615 11.21 0.00 46.96 1.75
314 315 7.989416 ACAAAATCACTCGTAGGGATTAAAA 57.011 32.000 11.21 0.00 46.96 1.52
344 348 4.706842 GGGATTCCCTGCTAGTATTGAA 57.293 45.455 14.98 0.00 41.34 2.69
346 350 5.635120 GGGATTCCCTGCTAGTATTGAATT 58.365 41.667 14.98 0.00 41.34 2.17
378 383 7.487822 AAATCACTTGAGATTAGAGTCCAGA 57.512 36.000 0.00 0.00 37.24 3.86
379 384 6.713762 ATCACTTGAGATTAGAGTCCAGAG 57.286 41.667 0.00 0.00 0.00 3.35
381 386 4.099266 CACTTGAGATTAGAGTCCAGAGGG 59.901 50.000 0.00 0.00 0.00 4.30
384 389 2.178106 GAGATTAGAGTCCAGAGGGGGA 59.822 54.545 0.00 0.00 37.22 4.81
385 390 2.178984 AGATTAGAGTCCAGAGGGGGAG 59.821 54.545 0.00 0.00 37.71 4.30
386 391 0.637195 TTAGAGTCCAGAGGGGGAGG 59.363 60.000 0.00 0.00 37.71 4.30
387 392 1.297409 TAGAGTCCAGAGGGGGAGGG 61.297 65.000 0.00 0.00 37.71 4.30
391 396 1.549322 TCCAGAGGGGGAGGGTAGT 60.549 63.158 0.00 0.00 37.22 2.73
392 397 0.254444 TCCAGAGGGGGAGGGTAGTA 60.254 60.000 0.00 0.00 37.22 1.82
393 398 0.105607 CCAGAGGGGGAGGGTAGTAC 60.106 65.000 0.00 0.00 0.00 2.73
394 399 0.105607 CAGAGGGGGAGGGTAGTACC 60.106 65.000 11.20 11.20 37.60 3.34
395 400 0.556888 AGAGGGGGAGGGTAGTACCA 60.557 60.000 20.97 0.00 41.02 3.25
396 401 0.398239 GAGGGGGAGGGTAGTACCAC 60.398 65.000 20.97 13.33 41.02 4.16
397 402 0.859057 AGGGGGAGGGTAGTACCACT 60.859 60.000 20.97 14.69 41.02 4.00
398 403 0.690077 GGGGGAGGGTAGTACCACTG 60.690 65.000 20.97 0.00 41.02 3.66
399 404 0.042281 GGGGAGGGTAGTACCACTGT 59.958 60.000 20.97 2.18 41.02 3.55
400 405 1.482954 GGGAGGGTAGTACCACTGTC 58.517 60.000 20.97 10.85 41.02 3.51
442 447 5.303165 TGTGAGCCTCATCATCATCATAAC 58.697 41.667 0.00 0.00 0.00 1.89
486 491 4.780021 AGATATATCACCATCACCCAGACC 59.220 45.833 15.08 0.00 0.00 3.85
491 496 0.110486 ACCATCACCCAGACCACAAC 59.890 55.000 0.00 0.00 0.00 3.32
512 517 4.760047 CCGCTTCACCCTCACCCG 62.760 72.222 0.00 0.00 0.00 5.28
537 542 0.831711 ACCAGCAACCACCCATTTCC 60.832 55.000 0.00 0.00 0.00 3.13
554 559 1.938814 CCGTGCACAGCAAACAACG 60.939 57.895 18.64 0.00 41.47 4.10
602 612 1.569493 CCTTCCGCAGTTTCGTGTG 59.431 57.895 0.00 0.00 0.00 3.82
621 631 6.093909 TCGTGTGTCATCAGCATATGAAATTT 59.906 34.615 6.97 0.00 42.53 1.82
652 675 0.833287 CCACCTCCTGGTACCATCAG 59.167 60.000 16.75 13.70 46.60 2.90
658 681 3.055530 CCTCCTGGTACCATCAGCATATC 60.056 52.174 16.75 0.00 0.00 1.63
659 682 3.580022 CTCCTGGTACCATCAGCATATCA 59.420 47.826 16.75 0.00 0.00 2.15
693 726 2.163818 ACCACACTATTGGACACACG 57.836 50.000 0.00 0.00 39.24 4.49
703 736 1.300931 GGACACACGCAGCAGAAGA 60.301 57.895 0.00 0.00 0.00 2.87
704 737 1.287730 GGACACACGCAGCAGAAGAG 61.288 60.000 0.00 0.00 0.00 2.85
705 738 0.319040 GACACACGCAGCAGAAGAGA 60.319 55.000 0.00 0.00 0.00 3.10
706 739 0.104855 ACACACGCAGCAGAAGAGAA 59.895 50.000 0.00 0.00 0.00 2.87
707 740 1.220529 CACACGCAGCAGAAGAGAAA 58.779 50.000 0.00 0.00 0.00 2.52
719 752 5.762711 AGCAGAAGAGAAAAGAAAAGAGACC 59.237 40.000 0.00 0.00 0.00 3.85
747 780 0.606604 TACACGAGCCTGTCTTTCCC 59.393 55.000 0.00 0.00 0.00 3.97
767 800 5.269991 TCCCGAGGGATAAACATAGATAGG 58.730 45.833 6.80 0.00 39.76 2.57
771 804 5.869888 CGAGGGATAAACATAGATAGGCAAC 59.130 44.000 0.00 0.00 0.00 4.17
826 859 2.584608 GCTCCTGCGGGCTAAAGA 59.415 61.111 6.73 0.00 0.00 2.52
827 860 1.147153 GCTCCTGCGGGCTAAAGAT 59.853 57.895 6.73 0.00 0.00 2.40
828 861 0.393077 GCTCCTGCGGGCTAAAGATA 59.607 55.000 6.73 0.00 0.00 1.98
829 862 1.002544 GCTCCTGCGGGCTAAAGATAT 59.997 52.381 6.73 0.00 0.00 1.63
830 863 2.693069 CTCCTGCGGGCTAAAGATATG 58.307 52.381 6.73 0.00 0.00 1.78
831 864 2.300152 CTCCTGCGGGCTAAAGATATGA 59.700 50.000 6.73 0.00 0.00 2.15
832 865 2.300152 TCCTGCGGGCTAAAGATATGAG 59.700 50.000 6.73 0.00 0.00 2.90
833 866 2.072298 CTGCGGGCTAAAGATATGAGC 58.928 52.381 0.00 0.00 35.39 4.26
835 868 1.714794 CGGGCTAAAGATATGAGCGG 58.285 55.000 0.00 0.00 37.07 5.52
836 869 1.673033 CGGGCTAAAGATATGAGCGGG 60.673 57.143 0.00 0.00 37.07 6.13
837 870 1.339151 GGGCTAAAGATATGAGCGGGG 60.339 57.143 0.00 0.00 37.07 5.73
838 871 1.348036 GGCTAAAGATATGAGCGGGGT 59.652 52.381 0.00 0.00 37.07 4.95
841 874 4.504340 GGCTAAAGATATGAGCGGGGTTTA 60.504 45.833 0.00 0.00 37.07 2.01
842 875 4.691216 GCTAAAGATATGAGCGGGGTTTAG 59.309 45.833 0.00 0.00 0.00 1.85
843 876 2.841442 AGATATGAGCGGGGTTTAGC 57.159 50.000 0.00 0.00 0.00 3.09
844 877 8.907399 GCTAAAGATATGAGCGGGGTTTAGCT 62.907 46.154 13.89 0.00 43.68 3.32
848 881 1.261938 TGAGCGGGGTTTAGCTAGCA 61.262 55.000 18.83 0.00 44.69 3.49
852 885 4.979657 GGGTTTAGCTAGCACCCC 57.020 61.111 24.91 19.03 44.16 4.95
895 931 2.069430 CCTTCCTCCTCCCAGCTCC 61.069 68.421 0.00 0.00 0.00 4.70
902 938 0.907704 TCCTCCCAGCTCCGCTTTTA 60.908 55.000 0.00 0.00 36.40 1.52
931 967 3.961009 TGATGAGCAGAGCCGGAT 58.039 55.556 5.05 0.00 0.00 4.18
932 968 1.744639 TGATGAGCAGAGCCGGATC 59.255 57.895 13.00 13.00 0.00 3.36
940 976 4.925861 GAGCCGGATCAGCTGCCC 62.926 72.222 16.44 11.74 41.75 5.36
1102 1138 2.650322 ACTCCTCTACTTCTCCACTCCA 59.350 50.000 0.00 0.00 0.00 3.86
1109 1145 5.272402 TCTACTTCTCCACTCCATCAATGA 58.728 41.667 0.00 0.00 0.00 2.57
1121 1157 6.152323 CACTCCATCAATGATTCCTTCTGTTT 59.848 38.462 0.00 0.00 0.00 2.83
1146 1188 5.255687 TCTGAATTTCAAGCTTATGCCTCA 58.744 37.500 0.00 0.00 40.80 3.86
1170 1212 1.614903 CTTTCAGACAATGGCCAAGCA 59.385 47.619 10.96 0.00 0.00 3.91
1284 1330 0.445436 CGTGTTGCTCATCCTTCTGC 59.555 55.000 0.00 0.00 0.00 4.26
1288 1334 0.679002 TTGCTCATCCTTCTGCCTGC 60.679 55.000 0.00 0.00 0.00 4.85
1293 1339 0.612732 CATCCTTCTGCCTGCCCAAA 60.613 55.000 0.00 0.00 0.00 3.28
1322 1368 3.746792 ATTTCAGGGGGAGAAAGAAGG 57.253 47.619 0.00 0.00 38.27 3.46
1496 1551 4.764336 CAACGCGCACATGGCCAG 62.764 66.667 13.05 6.08 40.31 4.85
1563 1618 2.125350 GAGCGGGAGGTGAAGCTG 60.125 66.667 0.00 0.00 43.00 4.24
1815 1870 1.303643 GGAGGCCAACCAGACCAAG 60.304 63.158 5.01 0.00 39.06 3.61
1974 2029 2.464157 AGAACAAGGAGCTGCTGTAC 57.536 50.000 9.14 1.12 0.00 2.90
2045 2100 3.886505 ACAGAGGTATAGCACTACTCTGC 59.113 47.826 17.13 0.00 40.06 4.26
2056 2111 3.923461 GCACTACTCTGCTTCTGTTACTG 59.077 47.826 0.00 0.00 34.06 2.74
2079 2134 6.791303 TGTTACTCTGCAAAGTTTGTAAAGG 58.209 36.000 16.70 7.77 0.00 3.11
2327 2383 4.530161 AGGACCTAATGATATGCACTCTCC 59.470 45.833 0.00 0.00 0.00 3.71
2342 2398 6.855836 TGCACTCTCCTTTATATTGCTTTTG 58.144 36.000 0.00 0.00 0.00 2.44
2347 2403 8.548877 ACTCTCCTTTATATTGCTTTTGTCCTA 58.451 33.333 0.00 0.00 0.00 2.94
2348 2404 8.732746 TCTCCTTTATATTGCTTTTGTCCTAC 57.267 34.615 0.00 0.00 0.00 3.18
2349 2405 8.325787 TCTCCTTTATATTGCTTTTGTCCTACA 58.674 33.333 0.00 0.00 0.00 2.74
2467 2523 6.211184 TGTTATCTGGGCAAGAAATTGAACAT 59.789 34.615 0.00 0.00 38.79 2.71
2471 2527 6.355747 TCTGGGCAAGAAATTGAACATTTTT 58.644 32.000 0.00 0.00 29.54 1.94
2474 2530 7.504403 TGGGCAAGAAATTGAACATTTTTCTA 58.496 30.769 11.06 0.00 38.42 2.10
2475 2531 7.656948 TGGGCAAGAAATTGAACATTTTTCTAG 59.343 33.333 11.06 0.00 38.42 2.43
2483 2539 6.995511 TTGAACATTTTTCTAGTATCGGGG 57.004 37.500 0.00 0.00 0.00 5.73
2541 2597 2.158696 AGTCAGCTGAGGTGCTTTTCTT 60.159 45.455 18.89 0.00 41.98 2.52
2568 2632 6.282199 TGAGAGTTAGTATTTCAGACCCAC 57.718 41.667 0.00 0.00 0.00 4.61
2594 2658 7.259290 TCACAATTCCTGAAGTTCTACAAAC 57.741 36.000 4.17 0.00 0.00 2.93
2603 2667 6.347725 CCTGAAGTTCTACAAACGAAGAATGG 60.348 42.308 4.17 0.00 34.43 3.16
2604 2668 5.049680 TGAAGTTCTACAAACGAAGAATGGC 60.050 40.000 4.17 0.00 34.43 4.40
2605 2669 4.385825 AGTTCTACAAACGAAGAATGGCA 58.614 39.130 0.00 0.00 34.43 4.92
2606 2670 4.452455 AGTTCTACAAACGAAGAATGGCAG 59.548 41.667 0.00 0.00 34.43 4.85
2610 2674 3.472652 ACAAACGAAGAATGGCAGTACA 58.527 40.909 0.00 0.00 0.00 2.90
2735 2850 3.258971 GAGGAGATCAACAACCTCAGG 57.741 52.381 0.00 0.00 45.53 3.86
2777 2892 0.326264 AGCAAGTGGAAGGCCTACAG 59.674 55.000 5.16 0.00 34.31 2.74
2864 2979 1.805945 GCTCCGCAACTACCAGACG 60.806 63.158 0.00 0.00 0.00 4.18
2870 2985 0.391130 GCAACTACCAGACGCCATCA 60.391 55.000 0.00 0.00 0.00 3.07
2914 3029 2.260869 GCACGAAGCTCAGCCCAAA 61.261 57.895 0.00 0.00 41.15 3.28
2975 3090 4.162690 GAACGAGGCCAGGGCGAT 62.163 66.667 5.01 0.00 43.06 4.58
2978 3093 4.301027 CGAGGCCAGGGCGATACC 62.301 72.222 5.01 0.00 43.06 2.73
2990 3105 1.146358 GCGATACCGACCTTGACAGC 61.146 60.000 0.00 0.00 38.22 4.40
3128 3243 1.002011 GTGGGGAAGGAGCAAGGAC 60.002 63.158 0.00 0.00 0.00 3.85
3245 3360 2.048444 TCAGAAATGCAGGAGATGGC 57.952 50.000 0.00 0.00 0.00 4.40
3260 3375 2.553962 TGGCATGTCCATCACAACG 58.446 52.632 4.93 0.00 40.72 4.10
3290 3405 0.546598 GGGACCAAGAATCCGGTGAT 59.453 55.000 0.00 0.00 37.08 3.06
3446 3561 2.389020 CGAGCAAGCCAGAGCACAG 61.389 63.158 0.00 0.00 43.56 3.66
3464 3579 0.400594 AGAGGTTTGGTGGTGGCTAC 59.599 55.000 0.00 0.00 0.00 3.58
3576 3691 3.118482 ACCTGGTGAGCAATCTAGTGATG 60.118 47.826 0.00 0.00 32.44 3.07
3632 3747 2.821969 GCTTGCCCAAATTGAGAAGAGA 59.178 45.455 0.00 0.00 0.00 3.10
3749 3864 3.721706 CCAGGTGCACCTCCTCCC 61.722 72.222 35.79 7.37 46.65 4.30
4008 4123 9.347934 CATTCCTATTAGCTGTAAGTATCTTCG 57.652 37.037 0.00 0.00 35.30 3.79
4123 4239 7.412137 TCAGCTCATTATGACGAATATTGTG 57.588 36.000 0.00 0.00 0.00 3.33
4179 4295 4.389374 TGGAGACACAAGGAGAATTTGTC 58.611 43.478 0.00 0.00 36.67 3.18
4188 4304 3.709587 AGGAGAATTTGTCGAGTCCCTA 58.290 45.455 0.00 0.00 0.00 3.53
4194 4310 1.654954 TTGTCGAGTCCCTAGCGAGC 61.655 60.000 0.00 0.00 34.41 5.03
4203 4319 3.955101 CTAGCGAGCGAGGTCCGG 61.955 72.222 0.00 0.00 39.04 5.14
4218 4334 3.880846 CGGGCAGCAAGATTCGCC 61.881 66.667 0.00 0.00 44.10 5.54
4248 4364 5.801444 CGATGATGTTGTTGCATTTGTACAT 59.199 36.000 0.00 0.00 0.00 2.29
4331 4447 3.452264 TGTACTTAGGCTGCACATGATCT 59.548 43.478 0.00 0.00 0.00 2.75
4342 4458 6.201806 GGCTGCACATGATCTACTACTAAAAG 59.798 42.308 0.00 0.00 0.00 2.27
4431 4547 5.709164 AGCAAAACTGATGCATTAAGAGAGT 59.291 36.000 15.16 2.92 46.22 3.24
4554 4670 3.390135 TCGTTGCTTGAGAAGTAAGTGG 58.610 45.455 0.00 0.00 33.71 4.00
4614 4730 9.583765 AGTTCTTCAGAGTAAATCGGTAATAAC 57.416 33.333 0.00 0.00 0.00 1.89
4616 4732 9.582431 TTCTTCAGAGTAAATCGGTAATAACTG 57.418 33.333 0.00 0.00 0.00 3.16
4847 5011 4.520492 GCATATGTTGGCAGCCTTACTTAT 59.480 41.667 14.15 14.46 0.00 1.73
4955 5131 0.109597 GGTTGCAGATCAAACTGGCG 60.110 55.000 0.00 0.00 39.29 5.69
4958 5134 0.035317 TGCAGATCAAACTGGCGTCT 59.965 50.000 0.00 0.00 38.22 4.18
5093 5269 4.202223 GCCTTCCGAGTTCATCAGGTATAA 60.202 45.833 0.00 0.00 0.00 0.98
5095 5271 6.525629 CCTTCCGAGTTCATCAGGTATAAAT 58.474 40.000 0.00 0.00 0.00 1.40
5096 5272 7.667557 CCTTCCGAGTTCATCAGGTATAAATA 58.332 38.462 0.00 0.00 0.00 1.40
5097 5273 8.148351 CCTTCCGAGTTCATCAGGTATAAATAA 58.852 37.037 0.00 0.00 0.00 1.40
5098 5274 8.882415 TTCCGAGTTCATCAGGTATAAATAAC 57.118 34.615 0.00 0.00 0.00 1.89
5100 5276 9.358406 TCCGAGTTCATCAGGTATAAATAACTA 57.642 33.333 0.00 0.00 0.00 2.24
5153 5329 9.631452 GTATATAATTACAGGTAAACCGGAGAC 57.369 37.037 9.46 1.97 42.08 3.36
5187 5363 0.321298 ACTTACCGTTCGCCATTGCT 60.321 50.000 0.00 0.00 34.43 3.91
5188 5364 0.802494 CTTACCGTTCGCCATTGCTT 59.198 50.000 0.00 0.00 34.43 3.91
5334 5513 2.896168 CGCTCCGGTCAGGTTAATTTA 58.104 47.619 0.00 0.00 41.99 1.40
5335 5514 3.463944 CGCTCCGGTCAGGTTAATTTAT 58.536 45.455 0.00 0.00 41.99 1.40
5337 5516 5.051816 CGCTCCGGTCAGGTTAATTTATAA 58.948 41.667 0.00 0.00 41.99 0.98
5426 5612 7.614192 TGTATATGTCAAGTCTACAGGTTCAGA 59.386 37.037 0.00 0.00 0.00 3.27
5427 5613 7.667575 ATATGTCAAGTCTACAGGTTCAGAT 57.332 36.000 0.00 0.00 0.00 2.90
5428 5614 5.392767 TGTCAAGTCTACAGGTTCAGATC 57.607 43.478 0.00 0.00 0.00 2.75
5498 5689 3.016736 CTGAAATTCTGTAACCGGGCAT 58.983 45.455 6.32 0.00 0.00 4.40
5500 5691 3.192422 TGAAATTCTGTAACCGGGCATTG 59.808 43.478 6.32 0.00 0.00 2.82
5510 5701 1.000394 ACCGGGCATTGTGTAAAAAGC 60.000 47.619 6.32 0.00 0.00 3.51
5630 6042 5.159209 GTCAGATTGAAATGCCTTGAACTG 58.841 41.667 0.00 0.00 0.00 3.16
5669 6130 4.576463 GGAGAGACTTGTGCTGAAGAAAAA 59.424 41.667 2.72 0.00 0.00 1.94
5705 6167 1.968540 GGTGGGCAGAACAGCAGAC 60.969 63.158 0.00 0.00 36.42 3.51
5723 6185 3.542676 ACCCAACGTGGTGAGCGA 61.543 61.111 0.00 0.00 37.20 4.93
5724 6186 2.738521 CCCAACGTGGTGAGCGAG 60.739 66.667 0.00 0.00 35.17 5.03
5725 6187 2.738521 CCAACGTGGTGAGCGAGG 60.739 66.667 0.00 0.00 31.35 4.63
5726 6188 3.414700 CAACGTGGTGAGCGAGGC 61.415 66.667 0.00 0.00 0.00 4.70
5727 6189 3.616721 AACGTGGTGAGCGAGGCT 61.617 61.111 0.00 0.00 43.88 4.58
5787 6249 0.798776 CCCTGCGAACAACAGATGAC 59.201 55.000 0.00 0.00 37.32 3.06
5788 6250 0.439985 CCTGCGAACAACAGATGACG 59.560 55.000 0.00 0.00 37.32 4.35
5800 6262 0.900182 AGATGACGGTGAGCCAGTGA 60.900 55.000 0.00 0.00 34.09 3.41
5894 6370 1.027255 CGTCTGAAGGCCGAGAGAGA 61.027 60.000 0.00 0.00 0.00 3.10
5895 6371 0.738389 GTCTGAAGGCCGAGAGAGAG 59.262 60.000 0.00 0.00 0.00 3.20
5896 6372 0.395036 TCTGAAGGCCGAGAGAGAGG 60.395 60.000 0.00 0.00 0.00 3.69
5897 6373 1.380515 TGAAGGCCGAGAGAGAGGG 60.381 63.158 0.00 0.00 0.00 4.30
5898 6374 1.076632 GAAGGCCGAGAGAGAGGGA 60.077 63.158 0.00 0.00 0.00 4.20
5899 6375 1.076339 AAGGCCGAGAGAGAGGGAG 60.076 63.158 0.00 0.00 0.00 4.30
5908 6384 2.447047 GAGAGAGAGGGAGGGAGAAGAT 59.553 54.545 0.00 0.00 0.00 2.40
6007 6483 3.791586 GCCAGGGAGGAGTCAGGC 61.792 72.222 0.00 0.00 41.22 4.85
6056 6533 2.746277 GGCGACAATGGCCGTCTT 60.746 61.111 0.00 0.00 41.39 3.01
6057 6534 2.332654 GGCGACAATGGCCGTCTTT 61.333 57.895 0.00 0.00 41.39 2.52
6058 6535 1.579429 GCGACAATGGCCGTCTTTT 59.421 52.632 0.00 0.00 0.00 2.27
6059 6536 0.039527 GCGACAATGGCCGTCTTTTT 60.040 50.000 0.00 0.00 0.00 1.94
6079 6556 2.943036 TTTTAGGGAAAGGCGACACT 57.057 45.000 0.00 0.00 0.00 3.55
6080 6557 2.178912 TTTAGGGAAAGGCGACACTG 57.821 50.000 0.00 0.00 0.00 3.66
6081 6558 0.323629 TTAGGGAAAGGCGACACTGG 59.676 55.000 0.00 0.00 0.00 4.00
6082 6559 2.180159 TAGGGAAAGGCGACACTGGC 62.180 60.000 0.00 0.00 0.00 4.85
6089 6566 2.183300 GCGACACTGGCCATCGTA 59.817 61.111 24.06 0.00 38.13 3.43
6090 6567 2.165301 GCGACACTGGCCATCGTAC 61.165 63.158 24.06 8.65 38.13 3.67
6091 6568 1.511305 CGACACTGGCCATCGTACT 59.489 57.895 17.26 0.00 0.00 2.73
6092 6569 0.736636 CGACACTGGCCATCGTACTA 59.263 55.000 17.26 0.00 0.00 1.82
6093 6570 1.268589 CGACACTGGCCATCGTACTAG 60.269 57.143 17.26 1.01 0.00 2.57
6094 6571 1.749634 GACACTGGCCATCGTACTAGT 59.250 52.381 5.51 0.00 0.00 2.57
6095 6572 1.749634 ACACTGGCCATCGTACTAGTC 59.250 52.381 5.51 0.00 0.00 2.59
6096 6573 1.022735 ACTGGCCATCGTACTAGTCG 58.977 55.000 5.51 3.38 0.00 4.18
6097 6574 1.022735 CTGGCCATCGTACTAGTCGT 58.977 55.000 5.51 0.00 0.00 4.34
6098 6575 0.736636 TGGCCATCGTACTAGTCGTG 59.263 55.000 0.00 4.87 0.00 4.35
6099 6576 1.019673 GGCCATCGTACTAGTCGTGA 58.980 55.000 0.00 0.00 0.00 4.35
6100 6577 1.402968 GGCCATCGTACTAGTCGTGAA 59.597 52.381 0.00 0.00 0.00 3.18
6101 6578 2.448219 GCCATCGTACTAGTCGTGAAC 58.552 52.381 0.00 0.00 0.00 3.18
6102 6579 2.097142 GCCATCGTACTAGTCGTGAACT 59.903 50.000 0.00 0.00 42.33 3.01
6103 6580 3.788135 GCCATCGTACTAGTCGTGAACTC 60.788 52.174 0.00 0.00 39.55 3.01
6104 6581 3.543656 CCATCGTACTAGTCGTGAACTCG 60.544 52.174 0.00 0.00 39.55 4.18
6105 6582 2.677199 TCGTACTAGTCGTGAACTCGT 58.323 47.619 0.00 0.00 39.55 4.18
6106 6583 2.409715 TCGTACTAGTCGTGAACTCGTG 59.590 50.000 0.00 0.00 39.55 4.35
6107 6584 2.409715 CGTACTAGTCGTGAACTCGTGA 59.590 50.000 0.00 0.00 39.55 4.35
6108 6585 3.061831 CGTACTAGTCGTGAACTCGTGAT 59.938 47.826 0.00 0.00 39.55 3.06
6109 6586 3.743567 ACTAGTCGTGAACTCGTGATC 57.256 47.619 0.00 0.00 39.55 2.92
6110 6587 3.072211 ACTAGTCGTGAACTCGTGATCA 58.928 45.455 0.00 0.00 39.55 2.92
6111 6588 2.333389 AGTCGTGAACTCGTGATCAC 57.667 50.000 16.21 16.21 40.95 3.06
6112 6589 1.880675 AGTCGTGAACTCGTGATCACT 59.119 47.619 22.95 4.58 41.80 3.41
6113 6590 2.095668 AGTCGTGAACTCGTGATCACTC 60.096 50.000 22.95 14.04 41.80 3.51
6114 6591 1.136057 TCGTGAACTCGTGATCACTCG 60.136 52.381 22.95 15.39 41.80 4.18
6115 6592 1.618861 GTGAACTCGTGATCACTCGG 58.381 55.000 22.95 14.40 41.10 4.63
6116 6593 0.109272 TGAACTCGTGATCACTCGGC 60.109 55.000 22.95 9.42 34.43 5.54
6117 6594 1.134530 GAACTCGTGATCACTCGGCG 61.135 60.000 22.95 10.12 34.43 6.46
6118 6595 2.278206 CTCGTGATCACTCGGCGG 60.278 66.667 22.95 7.03 34.43 6.13
6119 6596 4.492160 TCGTGATCACTCGGCGGC 62.492 66.667 22.95 0.00 34.43 6.53
6121 6598 4.796231 GTGATCACTCGGCGGCGT 62.796 66.667 31.06 11.70 0.00 5.68
6122 6599 4.794439 TGATCACTCGGCGGCGTG 62.794 66.667 31.06 29.64 0.00 5.34
6133 6610 4.807039 CGGCGTGGACGGGGTTAG 62.807 72.222 0.00 0.00 40.23 2.34
6134 6611 4.462280 GGCGTGGACGGGGTTAGG 62.462 72.222 0.71 0.00 40.23 2.69
6135 6612 3.698820 GCGTGGACGGGGTTAGGT 61.699 66.667 0.71 0.00 40.23 3.08
6136 6613 2.350458 GCGTGGACGGGGTTAGGTA 61.350 63.158 0.71 0.00 40.23 3.08
6137 6614 1.679559 GCGTGGACGGGGTTAGGTAT 61.680 60.000 0.71 0.00 40.23 2.73
6138 6615 0.103572 CGTGGACGGGGTTAGGTATG 59.896 60.000 0.00 0.00 35.37 2.39
6139 6616 0.466963 GTGGACGGGGTTAGGTATGG 59.533 60.000 0.00 0.00 0.00 2.74
6140 6617 0.691748 TGGACGGGGTTAGGTATGGG 60.692 60.000 0.00 0.00 0.00 4.00
6141 6618 1.448924 GACGGGGTTAGGTATGGGC 59.551 63.158 0.00 0.00 0.00 5.36
6142 6619 2.048419 GACGGGGTTAGGTATGGGCC 62.048 65.000 0.00 0.00 0.00 5.80
6143 6620 1.768888 CGGGGTTAGGTATGGGCCT 60.769 63.158 4.53 0.00 42.43 5.19
6144 6621 1.350310 CGGGGTTAGGTATGGGCCTT 61.350 60.000 4.53 0.00 39.94 4.35
6145 6622 0.477204 GGGGTTAGGTATGGGCCTTC 59.523 60.000 4.53 0.00 39.94 3.46
6146 6623 1.519498 GGGTTAGGTATGGGCCTTCT 58.481 55.000 4.53 0.00 39.94 2.85
6147 6624 1.143073 GGGTTAGGTATGGGCCTTCTG 59.857 57.143 4.53 0.00 39.94 3.02
6148 6625 1.143073 GGTTAGGTATGGGCCTTCTGG 59.857 57.143 4.53 0.00 39.94 3.86
6149 6626 1.143073 GTTAGGTATGGGCCTTCTGGG 59.857 57.143 4.53 0.00 39.94 4.45
6150 6627 0.401395 TAGGTATGGGCCTTCTGGGG 60.401 60.000 4.53 0.00 39.94 4.96
6185 6662 2.802719 GGAGCAACTCCCATTAAACCA 58.197 47.619 1.98 0.00 44.36 3.67
6186 6663 2.755103 GGAGCAACTCCCATTAAACCAG 59.245 50.000 1.98 0.00 44.36 4.00
6187 6664 2.164422 GAGCAACTCCCATTAAACCAGC 59.836 50.000 0.00 0.00 0.00 4.85
6188 6665 1.204704 GCAACTCCCATTAAACCAGCC 59.795 52.381 0.00 0.00 0.00 4.85
6189 6666 1.824852 CAACTCCCATTAAACCAGCCC 59.175 52.381 0.00 0.00 0.00 5.19
6190 6667 1.080638 ACTCCCATTAAACCAGCCCA 58.919 50.000 0.00 0.00 0.00 5.36
6191 6668 1.272480 ACTCCCATTAAACCAGCCCAC 60.272 52.381 0.00 0.00 0.00 4.61
6192 6669 0.040499 TCCCATTAAACCAGCCCACC 59.960 55.000 0.00 0.00 0.00 4.61
6193 6670 0.041090 CCCATTAAACCAGCCCACCT 59.959 55.000 0.00 0.00 0.00 4.00
6194 6671 1.552254 CCCATTAAACCAGCCCACCTT 60.552 52.381 0.00 0.00 0.00 3.50
6195 6672 2.291930 CCCATTAAACCAGCCCACCTTA 60.292 50.000 0.00 0.00 0.00 2.69
6196 6673 3.629796 CCCATTAAACCAGCCCACCTTAT 60.630 47.826 0.00 0.00 0.00 1.73
6197 6674 4.030216 CCATTAAACCAGCCCACCTTATT 58.970 43.478 0.00 0.00 0.00 1.40
6198 6675 4.469586 CCATTAAACCAGCCCACCTTATTT 59.530 41.667 0.00 0.00 0.00 1.40
6199 6676 5.418676 CATTAAACCAGCCCACCTTATTTG 58.581 41.667 0.00 0.00 0.00 2.32
6200 6677 2.694616 AACCAGCCCACCTTATTTGT 57.305 45.000 0.00 0.00 0.00 2.83
6201 6678 3.818295 AACCAGCCCACCTTATTTGTA 57.182 42.857 0.00 0.00 0.00 2.41
6202 6679 3.818295 ACCAGCCCACCTTATTTGTAA 57.182 42.857 0.00 0.00 0.00 2.41
6203 6680 4.331159 ACCAGCCCACCTTATTTGTAAT 57.669 40.909 0.00 0.00 0.00 1.89
6204 6681 4.278310 ACCAGCCCACCTTATTTGTAATC 58.722 43.478 0.00 0.00 0.00 1.75
6205 6682 3.636764 CCAGCCCACCTTATTTGTAATCC 59.363 47.826 0.00 0.00 0.00 3.01
6206 6683 4.536765 CAGCCCACCTTATTTGTAATCCT 58.463 43.478 0.00 0.00 0.00 3.24
6207 6684 5.398581 CCAGCCCACCTTATTTGTAATCCTA 60.399 44.000 0.00 0.00 0.00 2.94
6208 6685 6.306987 CAGCCCACCTTATTTGTAATCCTAT 58.693 40.000 0.00 0.00 0.00 2.57
6209 6686 7.458397 CAGCCCACCTTATTTGTAATCCTATA 58.542 38.462 0.00 0.00 0.00 1.31
6210 6687 8.109634 CAGCCCACCTTATTTGTAATCCTATAT 58.890 37.037 0.00 0.00 0.00 0.86
6211 6688 9.346515 AGCCCACCTTATTTGTAATCCTATATA 57.653 33.333 0.00 0.00 0.00 0.86
6212 6689 9.392259 GCCCACCTTATTTGTAATCCTATATAC 57.608 37.037 0.00 0.00 0.00 1.47
6213 6690 9.901172 CCCACCTTATTTGTAATCCTATATACC 57.099 37.037 0.00 0.00 0.00 2.73
6228 6705 9.845214 ATCCTATATACCTACAAAGTTGATCCT 57.155 33.333 0.00 0.00 0.00 3.24
6229 6706 9.310449 TCCTATATACCTACAAAGTTGATCCTC 57.690 37.037 0.00 0.00 0.00 3.71
6230 6707 9.090103 CCTATATACCTACAAAGTTGATCCTCA 57.910 37.037 0.00 0.00 0.00 3.86
6231 6708 9.915629 CTATATACCTACAAAGTTGATCCTCAC 57.084 37.037 0.00 0.00 0.00 3.51
6232 6709 6.875972 ATACCTACAAAGTTGATCCTCACT 57.124 37.500 0.00 0.00 0.00 3.41
6233 6710 7.973048 ATACCTACAAAGTTGATCCTCACTA 57.027 36.000 0.00 0.00 0.00 2.74
6234 6711 6.038997 ACCTACAAAGTTGATCCTCACTAC 57.961 41.667 0.00 0.00 0.00 2.73
6235 6712 5.542635 ACCTACAAAGTTGATCCTCACTACA 59.457 40.000 0.00 0.00 0.00 2.74
6236 6713 6.102663 CCTACAAAGTTGATCCTCACTACAG 58.897 44.000 0.00 0.00 0.00 2.74
6237 6714 5.552870 ACAAAGTTGATCCTCACTACAGT 57.447 39.130 0.00 0.00 0.00 3.55
6238 6715 5.930135 ACAAAGTTGATCCTCACTACAGTT 58.070 37.500 0.00 0.00 0.00 3.16
6239 6716 7.062749 ACAAAGTTGATCCTCACTACAGTTA 57.937 36.000 0.00 0.00 0.00 2.24
6240 6717 6.929606 ACAAAGTTGATCCTCACTACAGTTAC 59.070 38.462 0.00 0.00 0.00 2.50
6241 6718 6.919775 AAGTTGATCCTCACTACAGTTACT 57.080 37.500 0.00 0.00 0.00 2.24
6242 6719 6.518208 AGTTGATCCTCACTACAGTTACTC 57.482 41.667 0.00 0.00 0.00 2.59
6243 6720 6.010850 AGTTGATCCTCACTACAGTTACTCA 58.989 40.000 0.00 0.00 0.00 3.41
6244 6721 6.151985 AGTTGATCCTCACTACAGTTACTCAG 59.848 42.308 0.00 0.00 0.00 3.35
6245 6722 5.816682 TGATCCTCACTACAGTTACTCAGA 58.183 41.667 0.00 0.00 0.00 3.27
6246 6723 6.246163 TGATCCTCACTACAGTTACTCAGAA 58.754 40.000 0.00 0.00 0.00 3.02
6247 6724 6.375736 TGATCCTCACTACAGTTACTCAGAAG 59.624 42.308 0.00 0.00 0.00 2.85
6248 6725 5.877491 TCCTCACTACAGTTACTCAGAAGA 58.123 41.667 0.00 0.00 0.00 2.87
6249 6726 6.304624 TCCTCACTACAGTTACTCAGAAGAA 58.695 40.000 0.00 0.00 0.00 2.52
6250 6727 6.776116 TCCTCACTACAGTTACTCAGAAGAAA 59.224 38.462 0.00 0.00 0.00 2.52
6251 6728 7.287005 TCCTCACTACAGTTACTCAGAAGAAAA 59.713 37.037 0.00 0.00 0.00 2.29
6252 6729 7.926555 CCTCACTACAGTTACTCAGAAGAAAAA 59.073 37.037 0.00 0.00 0.00 1.94
6281 6758 9.875708 AGTTGATCCTCACTACTTCTATTATCT 57.124 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.535462 GATTGCCCGAACCCATTATCG 59.465 52.381 0.00 0.00 38.74 2.92
8 9 2.293399 GTGATTGCCCGAACCCATTATC 59.707 50.000 0.00 0.00 0.00 1.75
9 10 2.306847 GTGATTGCCCGAACCCATTAT 58.693 47.619 0.00 0.00 0.00 1.28
10 11 1.683629 GGTGATTGCCCGAACCCATTA 60.684 52.381 0.00 0.00 0.00 1.90
11 12 0.970427 GGTGATTGCCCGAACCCATT 60.970 55.000 0.00 0.00 0.00 3.16
12 13 1.379843 GGTGATTGCCCGAACCCAT 60.380 57.895 0.00 0.00 0.00 4.00
13 14 2.034999 GGTGATTGCCCGAACCCA 59.965 61.111 0.00 0.00 0.00 4.51
19 20 2.511600 GTCTCCGGTGATTGCCCG 60.512 66.667 9.83 0.00 45.07 6.13
20 21 0.744771 GAAGTCTCCGGTGATTGCCC 60.745 60.000 9.83 0.00 0.00 5.36
21 22 0.036388 TGAAGTCTCCGGTGATTGCC 60.036 55.000 9.83 2.56 0.00 4.52
22 23 1.363744 CTGAAGTCTCCGGTGATTGC 58.636 55.000 9.83 4.69 0.00 3.56
23 24 2.009042 GCCTGAAGTCTCCGGTGATTG 61.009 57.143 9.83 0.00 0.00 2.67
24 25 0.250513 GCCTGAAGTCTCCGGTGATT 59.749 55.000 9.83 2.10 0.00 2.57
25 26 1.617947 GGCCTGAAGTCTCCGGTGAT 61.618 60.000 9.83 0.00 0.00 3.06
26 27 2.283529 GGCCTGAAGTCTCCGGTGA 61.284 63.158 0.00 0.06 0.00 4.02
27 28 2.266055 GGCCTGAAGTCTCCGGTG 59.734 66.667 0.00 0.00 0.00 4.94
28 29 3.003763 GGGCCTGAAGTCTCCGGT 61.004 66.667 0.84 0.00 0.00 5.28
29 30 2.685380 AGGGCCTGAAGTCTCCGG 60.685 66.667 4.50 0.00 0.00 5.14
30 31 2.581354 CAGGGCCTGAAGTCTCCG 59.419 66.667 29.96 0.00 32.44 4.63
31 32 2.129555 TTGCAGGGCCTGAAGTCTCC 62.130 60.000 37.07 17.31 32.44 3.71
32 33 0.250901 TTTGCAGGGCCTGAAGTCTC 60.251 55.000 37.07 18.05 32.44 3.36
33 34 0.407139 ATTTGCAGGGCCTGAAGTCT 59.593 50.000 37.07 12.14 32.44 3.24
34 35 2.128771 TATTTGCAGGGCCTGAAGTC 57.871 50.000 37.07 19.19 32.44 3.01
35 36 2.834638 ATATTTGCAGGGCCTGAAGT 57.165 45.000 37.07 23.54 32.44 3.01
36 37 3.316308 GTGTATATTTGCAGGGCCTGAAG 59.684 47.826 37.07 11.76 32.44 3.02
37 38 3.053693 AGTGTATATTTGCAGGGCCTGAA 60.054 43.478 37.07 26.01 32.44 3.02
38 39 2.509548 AGTGTATATTTGCAGGGCCTGA 59.490 45.455 37.07 17.17 32.44 3.86
39 40 2.620115 CAGTGTATATTTGCAGGGCCTG 59.380 50.000 29.44 29.44 34.12 4.85
40 41 2.423373 CCAGTGTATATTTGCAGGGCCT 60.423 50.000 0.00 0.00 0.00 5.19
41 42 1.956477 CCAGTGTATATTTGCAGGGCC 59.044 52.381 0.00 0.00 0.00 5.80
42 43 1.338020 GCCAGTGTATATTTGCAGGGC 59.662 52.381 0.00 0.00 33.87 5.19
43 44 2.620115 CAGCCAGTGTATATTTGCAGGG 59.380 50.000 0.00 0.00 0.00 4.45
44 45 3.065786 CACAGCCAGTGTATATTTGCAGG 59.934 47.826 0.00 0.00 43.40 4.85
45 46 4.282950 CACAGCCAGTGTATATTTGCAG 57.717 45.455 0.00 0.00 43.40 4.41
57 58 3.181445 TGATTTAACCTGTCACAGCCAGT 60.181 43.478 0.00 0.00 0.00 4.00
58 59 3.411446 TGATTTAACCTGTCACAGCCAG 58.589 45.455 0.00 0.00 0.00 4.85
59 60 3.181445 ACTGATTTAACCTGTCACAGCCA 60.181 43.478 0.00 0.00 0.00 4.75
60 61 3.412386 ACTGATTTAACCTGTCACAGCC 58.588 45.455 0.00 0.00 0.00 4.85
61 62 5.238583 ACTACTGATTTAACCTGTCACAGC 58.761 41.667 0.00 0.00 0.00 4.40
62 63 8.088981 ACTTACTACTGATTTAACCTGTCACAG 58.911 37.037 0.00 0.00 0.00 3.66
63 64 7.959175 ACTTACTACTGATTTAACCTGTCACA 58.041 34.615 0.00 0.00 0.00 3.58
64 65 9.570488 CTACTTACTACTGATTTAACCTGTCAC 57.430 37.037 0.00 0.00 0.00 3.67
65 66 9.305555 ACTACTTACTACTGATTTAACCTGTCA 57.694 33.333 0.00 0.00 0.00 3.58
76 77 9.571816 GGGTCATTACTACTACTTACTACTGAT 57.428 37.037 0.00 0.00 0.00 2.90
77 78 8.551440 TGGGTCATTACTACTACTTACTACTGA 58.449 37.037 0.00 0.00 0.00 3.41
78 79 8.743085 TGGGTCATTACTACTACTTACTACTG 57.257 38.462 0.00 0.00 0.00 2.74
79 80 9.183368 GTTGGGTCATTACTACTACTTACTACT 57.817 37.037 0.00 0.00 0.00 2.57
80 81 9.183368 AGTTGGGTCATTACTACTACTTACTAC 57.817 37.037 0.00 0.00 0.00 2.73
81 82 9.401058 GAGTTGGGTCATTACTACTACTTACTA 57.599 37.037 0.00 0.00 0.00 1.82
82 83 7.892241 TGAGTTGGGTCATTACTACTACTTACT 59.108 37.037 0.00 0.00 0.00 2.24
83 84 8.059798 TGAGTTGGGTCATTACTACTACTTAC 57.940 38.462 0.00 0.00 0.00 2.34
84 85 8.834004 ATGAGTTGGGTCATTACTACTACTTA 57.166 34.615 0.00 0.00 33.07 2.24
85 86 7.399191 TGATGAGTTGGGTCATTACTACTACTT 59.601 37.037 0.00 0.00 37.29 2.24
86 87 6.895756 TGATGAGTTGGGTCATTACTACTACT 59.104 38.462 0.00 0.00 37.29 2.57
87 88 7.108841 TGATGAGTTGGGTCATTACTACTAC 57.891 40.000 0.00 0.00 37.29 2.73
88 89 7.727578 TTGATGAGTTGGGTCATTACTACTA 57.272 36.000 0.00 0.00 37.29 1.82
89 90 6.620877 TTGATGAGTTGGGTCATTACTACT 57.379 37.500 0.00 0.00 37.29 2.57
90 91 7.865706 AATTGATGAGTTGGGTCATTACTAC 57.134 36.000 0.00 0.00 37.29 2.73
92 93 9.125026 GATAAATTGATGAGTTGGGTCATTACT 57.875 33.333 0.00 0.00 37.29 2.24
93 94 8.902806 TGATAAATTGATGAGTTGGGTCATTAC 58.097 33.333 0.00 0.00 37.29 1.89
94 95 9.473007 TTGATAAATTGATGAGTTGGGTCATTA 57.527 29.630 0.00 0.00 37.29 1.90
95 96 7.959658 TGATAAATTGATGAGTTGGGTCATT 57.040 32.000 0.00 0.00 37.29 2.57
96 97 7.959658 TTGATAAATTGATGAGTTGGGTCAT 57.040 32.000 0.00 0.00 40.00 3.06
97 98 7.773489 TTTGATAAATTGATGAGTTGGGTCA 57.227 32.000 0.00 0.00 0.00 4.02
98 99 8.522830 TCTTTTGATAAATTGATGAGTTGGGTC 58.477 33.333 0.00 0.00 0.00 4.46
99 100 8.421249 TCTTTTGATAAATTGATGAGTTGGGT 57.579 30.769 0.00 0.00 0.00 4.51
100 101 9.362539 CTTCTTTTGATAAATTGATGAGTTGGG 57.637 33.333 0.00 0.00 0.00 4.12
101 102 9.918630 ACTTCTTTTGATAAATTGATGAGTTGG 57.081 29.630 0.00 0.00 0.00 3.77
128 129 7.928706 GCCTGTAATGTACTTGAAGATACTCAT 59.071 37.037 0.00 0.00 0.00 2.90
129 130 7.093509 TGCCTGTAATGTACTTGAAGATACTCA 60.094 37.037 0.00 0.00 0.00 3.41
130 131 7.265673 TGCCTGTAATGTACTTGAAGATACTC 58.734 38.462 0.00 0.00 0.00 2.59
131 132 7.182817 TGCCTGTAATGTACTTGAAGATACT 57.817 36.000 0.00 0.00 0.00 2.12
132 133 7.549488 ACTTGCCTGTAATGTACTTGAAGATAC 59.451 37.037 0.00 0.00 0.00 2.24
133 134 7.620880 ACTTGCCTGTAATGTACTTGAAGATA 58.379 34.615 0.00 0.00 0.00 1.98
134 135 6.476378 ACTTGCCTGTAATGTACTTGAAGAT 58.524 36.000 0.00 0.00 0.00 2.40
135 136 5.865085 ACTTGCCTGTAATGTACTTGAAGA 58.135 37.500 0.00 0.00 0.00 2.87
136 137 6.560253 AACTTGCCTGTAATGTACTTGAAG 57.440 37.500 0.00 0.00 0.00 3.02
137 138 6.016610 GGAAACTTGCCTGTAATGTACTTGAA 60.017 38.462 0.00 0.00 0.00 2.69
138 139 5.472137 GGAAACTTGCCTGTAATGTACTTGA 59.528 40.000 0.00 0.00 0.00 3.02
139 140 5.473504 AGGAAACTTGCCTGTAATGTACTTG 59.526 40.000 0.00 0.00 37.44 3.16
140 141 5.473504 CAGGAAACTTGCCTGTAATGTACTT 59.526 40.000 7.61 0.00 46.19 2.24
141 142 5.003804 CAGGAAACTTGCCTGTAATGTACT 58.996 41.667 7.61 0.00 46.19 2.73
142 143 5.296813 CAGGAAACTTGCCTGTAATGTAC 57.703 43.478 7.61 0.00 46.19 2.90
151 152 4.228210 TCCTATGAATCAGGAAACTTGCCT 59.772 41.667 0.00 0.00 39.28 4.75
152 153 4.336713 GTCCTATGAATCAGGAAACTTGCC 59.663 45.833 0.00 0.00 43.78 4.52
153 154 5.189180 AGTCCTATGAATCAGGAAACTTGC 58.811 41.667 0.00 0.00 43.78 4.01
154 155 7.148171 GGAAAGTCCTATGAATCAGGAAACTTG 60.148 40.741 5.17 0.00 43.78 3.16
155 156 6.887002 GGAAAGTCCTATGAATCAGGAAACTT 59.113 38.462 0.00 0.00 43.78 2.66
156 157 6.012508 TGGAAAGTCCTATGAATCAGGAAACT 60.013 38.462 0.00 0.00 43.78 2.66
157 158 6.180472 TGGAAAGTCCTATGAATCAGGAAAC 58.820 40.000 0.00 0.00 43.78 2.78
158 159 6.387192 TGGAAAGTCCTATGAATCAGGAAA 57.613 37.500 0.00 0.00 43.78 3.13
159 160 6.180472 GTTGGAAAGTCCTATGAATCAGGAA 58.820 40.000 0.00 0.00 43.78 3.36
160 161 5.250543 TGTTGGAAAGTCCTATGAATCAGGA 59.749 40.000 0.00 0.00 39.95 3.86
161 162 5.500234 TGTTGGAAAGTCCTATGAATCAGG 58.500 41.667 0.00 0.00 37.46 3.86
162 163 7.391554 TCTTTGTTGGAAAGTCCTATGAATCAG 59.608 37.037 0.00 0.00 37.46 2.90
163 164 7.174946 GTCTTTGTTGGAAAGTCCTATGAATCA 59.825 37.037 0.00 0.00 37.46 2.57
164 165 7.362142 GGTCTTTGTTGGAAAGTCCTATGAATC 60.362 40.741 0.00 0.00 37.46 2.52
165 166 6.434340 GGTCTTTGTTGGAAAGTCCTATGAAT 59.566 38.462 0.00 0.00 37.46 2.57
166 167 5.768164 GGTCTTTGTTGGAAAGTCCTATGAA 59.232 40.000 0.00 0.00 37.46 2.57
167 168 5.163141 TGGTCTTTGTTGGAAAGTCCTATGA 60.163 40.000 10.44 0.00 37.46 2.15
168 169 5.070001 TGGTCTTTGTTGGAAAGTCCTATG 58.930 41.667 10.44 0.00 37.46 2.23
169 170 5.319043 TGGTCTTTGTTGGAAAGTCCTAT 57.681 39.130 10.44 0.00 37.46 2.57
170 171 4.781775 TGGTCTTTGTTGGAAAGTCCTA 57.218 40.909 10.44 0.00 37.46 2.94
171 172 3.662759 TGGTCTTTGTTGGAAAGTCCT 57.337 42.857 10.44 0.00 37.46 3.85
172 173 4.729227 TTTGGTCTTTGTTGGAAAGTCC 57.271 40.909 0.00 0.00 36.46 3.85
173 174 6.310467 GTCTTTTTGGTCTTTGTTGGAAAGTC 59.690 38.462 0.00 0.00 0.00 3.01
174 175 6.163476 GTCTTTTTGGTCTTTGTTGGAAAGT 58.837 36.000 0.00 0.00 0.00 2.66
175 176 6.162777 TGTCTTTTTGGTCTTTGTTGGAAAG 58.837 36.000 0.00 0.00 0.00 2.62
176 177 6.015010 TCTGTCTTTTTGGTCTTTGTTGGAAA 60.015 34.615 0.00 0.00 0.00 3.13
177 178 5.478679 TCTGTCTTTTTGGTCTTTGTTGGAA 59.521 36.000 0.00 0.00 0.00 3.53
178 179 5.013547 TCTGTCTTTTTGGTCTTTGTTGGA 58.986 37.500 0.00 0.00 0.00 3.53
179 180 5.105756 ACTCTGTCTTTTTGGTCTTTGTTGG 60.106 40.000 0.00 0.00 0.00 3.77
180 181 5.954335 ACTCTGTCTTTTTGGTCTTTGTTG 58.046 37.500 0.00 0.00 0.00 3.33
181 182 6.590234 AACTCTGTCTTTTTGGTCTTTGTT 57.410 33.333 0.00 0.00 0.00 2.83
182 183 6.434340 AGAAACTCTGTCTTTTTGGTCTTTGT 59.566 34.615 0.00 0.00 0.00 2.83
183 184 6.749118 CAGAAACTCTGTCTTTTTGGTCTTTG 59.251 38.462 0.00 0.00 39.58 2.77
184 185 6.659242 TCAGAAACTCTGTCTTTTTGGTCTTT 59.341 34.615 3.71 0.00 44.58 2.52
185 186 6.094186 GTCAGAAACTCTGTCTTTTTGGTCTT 59.906 38.462 3.71 0.00 44.58 3.01
186 187 5.586643 GTCAGAAACTCTGTCTTTTTGGTCT 59.413 40.000 3.71 0.00 44.58 3.85
187 188 5.354234 TGTCAGAAACTCTGTCTTTTTGGTC 59.646 40.000 3.71 0.00 44.58 4.02
188 189 5.253330 TGTCAGAAACTCTGTCTTTTTGGT 58.747 37.500 3.71 0.00 44.58 3.67
189 190 5.818136 TGTCAGAAACTCTGTCTTTTTGG 57.182 39.130 3.71 0.00 44.58 3.28
190 191 6.744537 CACTTGTCAGAAACTCTGTCTTTTTG 59.255 38.462 3.71 0.00 44.58 2.44
191 192 6.623767 GCACTTGTCAGAAACTCTGTCTTTTT 60.624 38.462 3.71 0.00 44.58 1.94
192 193 5.163713 GCACTTGTCAGAAACTCTGTCTTTT 60.164 40.000 3.71 0.00 44.58 2.27
193 194 4.333926 GCACTTGTCAGAAACTCTGTCTTT 59.666 41.667 3.71 0.00 44.58 2.52
194 195 3.873952 GCACTTGTCAGAAACTCTGTCTT 59.126 43.478 3.71 0.00 44.58 3.01
195 196 3.462021 GCACTTGTCAGAAACTCTGTCT 58.538 45.455 3.71 0.00 44.58 3.41
196 197 2.545946 GGCACTTGTCAGAAACTCTGTC 59.454 50.000 3.71 0.00 44.58 3.51
197 198 2.092968 TGGCACTTGTCAGAAACTCTGT 60.093 45.455 3.71 0.00 44.58 3.41
198 199 2.564771 TGGCACTTGTCAGAAACTCTG 58.435 47.619 0.00 0.00 45.59 3.35
207 208 0.689055 ATCTCAGCTGGCACTTGTCA 59.311 50.000 15.13 0.00 0.00 3.58
208 209 1.736681 GAATCTCAGCTGGCACTTGTC 59.263 52.381 15.13 0.00 0.00 3.18
209 210 1.350351 AGAATCTCAGCTGGCACTTGT 59.650 47.619 15.13 0.00 0.00 3.16
210 211 1.738350 CAGAATCTCAGCTGGCACTTG 59.262 52.381 15.13 2.42 0.00 3.16
211 212 1.627329 TCAGAATCTCAGCTGGCACTT 59.373 47.619 15.13 2.65 33.05 3.16
212 213 1.273759 TCAGAATCTCAGCTGGCACT 58.726 50.000 15.13 4.09 33.05 4.40
213 214 2.105006 TTCAGAATCTCAGCTGGCAC 57.895 50.000 15.13 1.73 33.05 5.01
214 215 2.865119 TTTCAGAATCTCAGCTGGCA 57.135 45.000 15.13 0.20 33.05 4.92
215 216 4.034975 GTGTATTTCAGAATCTCAGCTGGC 59.965 45.833 15.13 0.00 33.05 4.85
216 217 4.574013 GGTGTATTTCAGAATCTCAGCTGG 59.426 45.833 15.13 4.77 33.05 4.85
217 218 5.426504 AGGTGTATTTCAGAATCTCAGCTG 58.573 41.667 7.63 7.63 37.04 4.24
218 219 5.690464 AGGTGTATTTCAGAATCTCAGCT 57.310 39.130 7.44 7.44 35.39 4.24
219 220 6.481644 CCTAAGGTGTATTTCAGAATCTCAGC 59.518 42.308 0.00 0.00 32.76 4.26
220 221 7.560368 ACCTAAGGTGTATTTCAGAATCTCAG 58.440 38.462 0.00 0.00 32.98 3.35
221 222 7.496346 ACCTAAGGTGTATTTCAGAATCTCA 57.504 36.000 0.00 0.00 32.98 3.27
222 223 9.886132 TTTACCTAAGGTGTATTTCAGAATCTC 57.114 33.333 0.00 0.00 36.19 2.75
226 227 9.158233 CGATTTTACCTAAGGTGTATTTCAGAA 57.842 33.333 0.00 0.00 36.19 3.02
227 228 7.767198 CCGATTTTACCTAAGGTGTATTTCAGA 59.233 37.037 0.00 0.00 36.19 3.27
228 229 7.551617 ACCGATTTTACCTAAGGTGTATTTCAG 59.448 37.037 0.00 0.00 36.19 3.02
229 230 7.396418 ACCGATTTTACCTAAGGTGTATTTCA 58.604 34.615 0.00 0.00 36.19 2.69
230 231 7.254218 CGACCGATTTTACCTAAGGTGTATTTC 60.254 40.741 0.00 0.00 36.19 2.17
231 232 6.536224 CGACCGATTTTACCTAAGGTGTATTT 59.464 38.462 0.00 0.00 36.19 1.40
232 233 6.044682 CGACCGATTTTACCTAAGGTGTATT 58.955 40.000 0.00 0.00 36.19 1.89
238 239 3.175109 AGCGACCGATTTTACCTAAGG 57.825 47.619 0.00 0.00 0.00 2.69
266 267 9.286170 TGTATCTAATCTGAATTCTACTAGCGT 57.714 33.333 7.05 0.00 0.00 5.07
279 280 9.952188 CTACGAGTGATTTTGTATCTAATCTGA 57.048 33.333 0.00 0.00 33.08 3.27
323 327 4.706842 TTCAATACTAGCAGGGAATCCC 57.293 45.455 11.16 11.16 45.90 3.85
357 362 4.952957 CCTCTGGACTCTAATCTCAAGTGA 59.047 45.833 0.00 0.00 0.00 3.41
378 383 0.859057 AGTGGTACTACCCTCCCCCT 60.859 60.000 5.65 0.00 37.50 4.79
379 384 0.690077 CAGTGGTACTACCCTCCCCC 60.690 65.000 5.65 0.00 37.50 5.40
381 386 1.482954 GACAGTGGTACTACCCTCCC 58.517 60.000 5.65 0.00 37.50 4.30
384 389 1.432024 AGTGGACAGTGGTACTACCCT 59.568 52.381 5.65 0.00 37.50 4.34
385 390 1.549170 CAGTGGACAGTGGTACTACCC 59.451 57.143 5.65 1.05 37.50 3.69
386 391 1.067071 GCAGTGGACAGTGGTACTACC 60.067 57.143 5.65 0.00 39.22 3.18
387 392 1.067071 GGCAGTGGACAGTGGTACTAC 60.067 57.143 0.19 0.19 32.50 2.73
391 396 0.324614 CATGGCAGTGGACAGTGGTA 59.675 55.000 9.03 0.00 33.72 3.25
392 397 1.073722 CATGGCAGTGGACAGTGGT 59.926 57.895 9.03 0.00 33.72 4.16
393 398 2.338015 GCATGGCAGTGGACAGTGG 61.338 63.158 9.03 0.00 33.72 4.00
394 399 1.303074 AGCATGGCAGTGGACAGTG 60.303 57.895 2.80 2.80 33.72 3.66
395 400 1.002868 GAGCATGGCAGTGGACAGT 60.003 57.895 0.00 0.00 33.72 3.55
396 401 1.748122 GGAGCATGGCAGTGGACAG 60.748 63.158 0.00 0.00 33.72 3.51
397 402 1.855441 ATGGAGCATGGCAGTGGACA 61.855 55.000 0.00 0.00 35.65 4.02
398 403 1.077212 ATGGAGCATGGCAGTGGAC 60.077 57.895 0.00 0.00 0.00 4.02
399 404 1.225426 GATGGAGCATGGCAGTGGA 59.775 57.895 0.00 0.00 0.00 4.02
400 405 1.826921 GGATGGAGCATGGCAGTGG 60.827 63.158 0.00 0.00 0.00 4.00
512 517 2.193536 GGTGGTTGCTGGTGTGTCC 61.194 63.158 0.00 0.00 0.00 4.02
537 542 1.938814 CCGTTGTTTGCTGTGCACG 60.939 57.895 13.13 8.32 38.71 5.34
554 559 1.276622 TTGGAAGAGAGTGGTAGGCC 58.723 55.000 0.00 0.00 0.00 5.19
621 631 0.467290 GGAGGTGGTGGCTGACAAAA 60.467 55.000 0.00 0.00 0.00 2.44
664 687 4.534500 TCCAATAGTGTGGTACCTGACAAT 59.466 41.667 14.36 11.75 39.88 2.71
665 688 3.904965 TCCAATAGTGTGGTACCTGACAA 59.095 43.478 14.36 0.00 39.88 3.18
672 695 2.991190 CGTGTGTCCAATAGTGTGGTAC 59.009 50.000 0.00 0.00 39.88 3.34
693 726 5.238214 TCTCTTTTCTTTTCTCTTCTGCTGC 59.762 40.000 0.00 0.00 0.00 5.25
703 736 5.372373 CACAGGAGGTCTCTTTTCTTTTCT 58.628 41.667 0.00 0.00 0.00 2.52
704 737 4.023622 GCACAGGAGGTCTCTTTTCTTTTC 60.024 45.833 0.00 0.00 0.00 2.29
705 738 3.885901 GCACAGGAGGTCTCTTTTCTTTT 59.114 43.478 0.00 0.00 0.00 2.27
706 739 3.137360 AGCACAGGAGGTCTCTTTTCTTT 59.863 43.478 0.00 0.00 0.00 2.52
707 740 2.708325 AGCACAGGAGGTCTCTTTTCTT 59.292 45.455 0.00 0.00 0.00 2.52
747 780 5.661056 TGCCTATCTATGTTTATCCCTCG 57.339 43.478 0.00 0.00 0.00 4.63
767 800 1.066929 GGAACATGTGGATTGGGTTGC 60.067 52.381 0.00 0.00 0.00 4.17
771 804 1.767759 GGAGGAACATGTGGATTGGG 58.232 55.000 0.00 0.00 0.00 4.12
817 850 1.339151 CCCCGCTCATATCTTTAGCCC 60.339 57.143 0.00 0.00 32.50 5.19
821 854 4.347000 AGCTAAACCCCGCTCATATCTTTA 59.653 41.667 0.00 0.00 0.00 1.85
825 858 2.841442 AGCTAAACCCCGCTCATATC 57.159 50.000 0.00 0.00 0.00 1.63
826 859 2.028020 GCTAGCTAAACCCCGCTCATAT 60.028 50.000 7.70 0.00 37.68 1.78
827 860 1.343465 GCTAGCTAAACCCCGCTCATA 59.657 52.381 7.70 0.00 37.68 2.15
828 861 0.106894 GCTAGCTAAACCCCGCTCAT 59.893 55.000 7.70 0.00 37.68 2.90
829 862 1.261938 TGCTAGCTAAACCCCGCTCA 61.262 55.000 17.23 0.00 37.68 4.26
830 863 0.810426 GTGCTAGCTAAACCCCGCTC 60.810 60.000 17.23 0.00 37.68 5.03
831 864 1.221021 GTGCTAGCTAAACCCCGCT 59.779 57.895 17.23 0.00 40.15 5.52
832 865 1.818363 GGTGCTAGCTAAACCCCGC 60.818 63.158 17.23 4.10 0.00 6.13
833 866 1.153229 GGGTGCTAGCTAAACCCCG 60.153 63.158 24.91 2.57 46.77 5.73
836 869 1.153229 CGGGGGTGCTAGCTAAACC 60.153 63.158 17.23 14.93 0.00 3.27
837 870 1.153229 CCGGGGGTGCTAGCTAAAC 60.153 63.158 17.23 5.66 0.00 2.01
838 871 3.038945 GCCGGGGGTGCTAGCTAAA 62.039 63.158 17.23 0.00 0.00 1.85
1102 1138 9.690913 TTCAGATAAACAGAAGGAATCATTGAT 57.309 29.630 0.00 0.00 0.00 2.57
1121 1157 7.012704 GTGAGGCATAAGCTTGAAATTCAGATA 59.987 37.037 9.86 0.00 41.70 1.98
1170 1212 1.210885 CCTTCTCCTTCCCCTTGCCT 61.211 60.000 0.00 0.00 0.00 4.75
1177 1219 2.904131 CCGAGCCTTCTCCTTCCC 59.096 66.667 0.00 0.00 35.94 3.97
1255 1301 0.865639 GAGCAACACGCACAACCAAC 60.866 55.000 0.00 0.00 46.13 3.77
1284 1330 5.732633 TGAAATAATCAACATTTGGGCAGG 58.267 37.500 0.00 0.00 34.30 4.85
1288 1334 5.396660 CCCCCTGAAATAATCAACATTTGGG 60.397 44.000 0.00 0.00 37.67 4.12
1293 1339 5.732331 TCTCCCCCTGAAATAATCAACAT 57.268 39.130 0.00 0.00 37.67 2.71
1322 1368 2.100989 TCTTAACCTCTTCCTCCTCGC 58.899 52.381 0.00 0.00 0.00 5.03
1463 1509 4.720902 TGTACCGGGACCGCTCGA 62.721 66.667 16.09 0.00 41.67 4.04
1692 1747 0.107752 CCTGCAGCTTCTTCCTCTCC 60.108 60.000 8.66 0.00 0.00 3.71
1729 1784 4.394712 CTCCTTCTTGGCGGCCGT 62.395 66.667 28.70 0.00 35.26 5.68
1833 1888 1.880819 GCCCCATCACCTGTTGCTTG 61.881 60.000 0.00 0.00 0.00 4.01
1974 2029 0.749649 CCATGAGGTCCCTCTTCTCG 59.250 60.000 14.20 0.00 43.12 4.04
2013 2068 7.054751 AGTGCTATACCTCTGTTATTTTTCCC 58.945 38.462 0.00 0.00 0.00 3.97
2045 2100 6.480320 ACTTTGCAGAGTAACAGTAACAGAAG 59.520 38.462 8.37 0.00 0.00 2.85
2056 2111 5.685954 GCCTTTACAAACTTTGCAGAGTAAC 59.314 40.000 10.74 0.00 0.00 2.50
2079 2134 6.640499 TGTGTCATGTACTAAAATGCAAAAGC 59.360 34.615 0.00 0.00 0.00 3.51
2129 2184 5.893255 ACCATGCAAATGATTAGGCTAGAAA 59.107 36.000 0.00 0.00 0.00 2.52
2130 2185 5.448654 ACCATGCAAATGATTAGGCTAGAA 58.551 37.500 0.00 0.00 0.00 2.10
2131 2186 5.052693 ACCATGCAAATGATTAGGCTAGA 57.947 39.130 0.00 0.00 0.00 2.43
2342 2398 8.713271 TGATTTGTTTGTTTGTTTTTGTAGGAC 58.287 29.630 0.00 0.00 0.00 3.85
2384 2440 2.052782 AAGTCAAAACTTGCGGTCCT 57.947 45.000 0.00 0.00 44.13 3.85
2431 2487 4.080072 TGCCCAGATAACAATGTCATGGTA 60.080 41.667 0.00 0.00 0.00 3.25
2437 2493 5.643379 TTTCTTGCCCAGATAACAATGTC 57.357 39.130 0.00 0.00 0.00 3.06
2467 2523 6.416415 TGCATTTACCCCGATACTAGAAAAA 58.584 36.000 0.00 0.00 0.00 1.94
2471 2527 5.818678 ATTGCATTTACCCCGATACTAGA 57.181 39.130 0.00 0.00 0.00 2.43
2474 2530 5.891551 AGAAAATTGCATTTACCCCGATACT 59.108 36.000 0.00 0.00 0.00 2.12
2475 2531 6.144078 AGAAAATTGCATTTACCCCGATAC 57.856 37.500 0.00 0.00 0.00 2.24
2480 2536 4.225042 AGGGAAGAAAATTGCATTTACCCC 59.775 41.667 13.70 10.89 34.81 4.95
2483 2539 6.928492 TGAACAGGGAAGAAAATTGCATTTAC 59.072 34.615 0.00 0.00 0.00 2.01
2518 2574 0.888285 AAAGCACCTCAGCTGACTGC 60.888 55.000 24.99 24.99 45.89 4.40
2541 2597 9.042450 TGGGTCTGAAATACTAACTCTCAATAA 57.958 33.333 0.00 0.00 0.00 1.40
2568 2632 7.439157 TTGTAGAACTTCAGGAATTGTGATG 57.561 36.000 0.00 0.00 0.00 3.07
2594 2658 7.715265 AATTACTATGTACTGCCATTCTTCG 57.285 36.000 0.00 0.00 0.00 3.79
2621 2685 9.255304 TGTCATGAAAAAGTATTTGGCTAAAAC 57.745 29.630 0.00 0.00 39.02 2.43
2735 2850 0.531974 TCAGGTCCTCGTTTGTGTGC 60.532 55.000 0.00 0.00 0.00 4.57
2777 2892 5.240891 TCCACTTCACTGAATCTGTTCATC 58.759 41.667 0.00 0.00 43.08 2.92
2798 2913 0.391793 GCAGGTACACCAGCTCTTCC 60.392 60.000 8.41 0.00 44.12 3.46
2873 2988 1.425428 GTCGCGGGCAGAGATTTTG 59.575 57.895 6.13 0.00 0.00 2.44
2876 2991 3.077556 AGGTCGCGGGCAGAGATT 61.078 61.111 6.13 0.00 0.00 2.40
2914 3029 4.704103 TGGCCCTCTCCTGCGACT 62.704 66.667 0.00 0.00 0.00 4.18
2975 3090 0.390124 AAACGCTGTCAAGGTCGGTA 59.610 50.000 0.00 0.00 0.00 4.02
2978 3093 0.600255 AGGAAACGCTGTCAAGGTCG 60.600 55.000 0.00 0.00 0.00 4.79
2990 3105 0.602905 AAGAAGGTGCGGAGGAAACG 60.603 55.000 0.00 0.00 0.00 3.60
3128 3243 0.031314 ATGACAGATAGCTGCCGTCG 59.969 55.000 8.16 0.00 46.26 5.12
3245 3360 2.551887 TCCAAACGTTGTGATGGACATG 59.448 45.455 14.08 0.00 37.05 3.21
3254 3369 3.183754 GTCCCTTTTTCCAAACGTTGTG 58.816 45.455 0.00 2.46 0.00 3.33
3260 3375 4.746535 TTCTTGGTCCCTTTTTCCAAAC 57.253 40.909 0.00 0.00 40.11 2.93
3446 3561 0.109723 TGTAGCCACCACCAAACCTC 59.890 55.000 0.00 0.00 0.00 3.85
3576 3691 2.033602 CAGGGGGTTGTTCGGGAC 59.966 66.667 0.00 0.00 0.00 4.46
3632 3747 2.685380 CGGGGGACTCTTGGAGCT 60.685 66.667 0.00 0.00 32.04 4.09
3749 3864 3.011517 CTCCCTGGAGGTGGTGGG 61.012 72.222 5.22 0.00 40.95 4.61
3830 3945 4.012895 GCACGGTGCACCTTGTCG 62.013 66.667 34.80 23.45 44.26 4.35
4020 4135 2.292103 TTGGCAGGATTTTTATGCGC 57.708 45.000 0.00 0.00 40.90 6.09
4179 4295 2.887889 CTCGCTCGCTAGGGACTCG 61.888 68.421 16.00 16.00 39.58 4.18
4218 4334 7.221259 ACAAATGCAACAACATCATCGATATTG 59.779 33.333 0.00 1.07 33.28 1.90
4248 4364 1.003580 GACAACTCCTCATCCAGCCAA 59.996 52.381 0.00 0.00 0.00 4.52
4391 4507 0.107993 TGCTCTCTGGCCAATCGAAG 60.108 55.000 7.01 1.19 0.00 3.79
4431 4547 1.480954 GTCCTGATACTCAAAGGCGGA 59.519 52.381 0.00 0.00 0.00 5.54
4576 4692 9.944376 TTACTCTGAAGAACTATGCTATTTTGT 57.056 29.630 0.00 0.00 0.00 2.83
4642 4760 7.695055 TCTTAGGGTAAACATCTTGGAATTCA 58.305 34.615 7.93 0.00 0.00 2.57
4932 5108 2.029649 CCAGTTTGATCTGCAACCAAGG 60.030 50.000 0.00 0.00 35.91 3.61
4933 5109 2.608752 GCCAGTTTGATCTGCAACCAAG 60.609 50.000 0.00 0.00 35.91 3.61
4955 5131 1.597742 TCTTTGCCAGCTGAACAGAC 58.402 50.000 17.39 0.00 0.00 3.51
4958 5134 2.057137 ACTTCTTTGCCAGCTGAACA 57.943 45.000 17.39 10.51 0.00 3.18
5051 5227 1.144936 GAATCTGACGCCCTGGAGG 59.855 63.158 0.00 0.00 39.47 4.30
5095 5271 9.226606 CTGTGGAAATGTAAGTTTGGATAGTTA 57.773 33.333 0.00 0.00 0.00 2.24
5096 5272 7.724061 ACTGTGGAAATGTAAGTTTGGATAGTT 59.276 33.333 0.00 0.00 0.00 2.24
5097 5273 7.231467 ACTGTGGAAATGTAAGTTTGGATAGT 58.769 34.615 0.00 0.00 0.00 2.12
5098 5274 7.687941 ACTGTGGAAATGTAAGTTTGGATAG 57.312 36.000 0.00 0.00 0.00 2.08
5100 5276 7.888021 TCATACTGTGGAAATGTAAGTTTGGAT 59.112 33.333 0.00 0.00 0.00 3.41
5101 5277 7.227873 TCATACTGTGGAAATGTAAGTTTGGA 58.772 34.615 0.00 0.00 0.00 3.53
5102 5278 7.174946 ACTCATACTGTGGAAATGTAAGTTTGG 59.825 37.037 0.00 0.00 0.00 3.28
5103 5279 8.099364 ACTCATACTGTGGAAATGTAAGTTTG 57.901 34.615 0.00 0.00 0.00 2.93
5147 5323 6.246420 AGTTCTTGATTTGAAATGTCTCCG 57.754 37.500 0.00 0.00 0.00 4.63
5283 5459 0.452184 AGACTCCGCACTATGTGTCG 59.548 55.000 0.00 4.12 35.75 4.35
5334 5513 7.184067 ACAGTTTAGCTAGCCAACTACTTAT 57.816 36.000 23.11 9.24 0.00 1.73
5335 5514 6.600882 ACAGTTTAGCTAGCCAACTACTTA 57.399 37.500 23.11 1.40 0.00 2.24
5337 5516 5.479375 TGTACAGTTTAGCTAGCCAACTACT 59.521 40.000 23.11 15.88 0.00 2.57
5462 5653 3.577649 TTTCAGCCGAACAAACAAACA 57.422 38.095 0.00 0.00 0.00 2.83
5498 5689 3.440872 ACTGTGGTTCGCTTTTTACACAA 59.559 39.130 0.00 0.00 38.23 3.33
5500 5691 3.685836 ACTGTGGTTCGCTTTTTACAC 57.314 42.857 0.00 0.00 0.00 2.90
5510 5701 6.039493 AGGTAGTATCTCATTACTGTGGTTCG 59.961 42.308 0.00 0.00 34.35 3.95
5544 5956 6.222389 CAACAGATTGCCAAATTGGAAGTAA 58.778 36.000 17.47 5.15 40.96 2.24
5615 6027 5.860716 GTCTGAATTCAGTTCAAGGCATTTC 59.139 40.000 29.80 6.83 45.74 2.17
5630 6042 4.568760 GTCTCTCCGGATTTGTCTGAATTC 59.431 45.833 3.57 0.00 0.00 2.17
5669 6130 2.951642 CACCGATGCCATGTAAAATCCT 59.048 45.455 0.00 0.00 0.00 3.24
5754 6216 4.755507 AGGGTCGGTCCGGTCTCC 62.756 72.222 12.29 9.02 37.00 3.71
5755 6217 3.450115 CAGGGTCGGTCCGGTCTC 61.450 72.222 12.29 5.29 37.00 3.36
5787 6249 1.363744 GATTCTTCACTGGCTCACCG 58.636 55.000 0.00 0.00 39.70 4.94
5788 6250 1.003580 TGGATTCTTCACTGGCTCACC 59.996 52.381 0.00 0.00 0.00 4.02
5800 6262 4.327680 GCACCTAACTCACTTGGATTCTT 58.672 43.478 0.00 0.00 0.00 2.52
5894 6370 1.657162 TGGGTTATCTTCTCCCTCCCT 59.343 52.381 0.00 0.00 41.58 4.20
5895 6371 1.769465 GTGGGTTATCTTCTCCCTCCC 59.231 57.143 0.00 0.00 41.58 4.30
5896 6372 1.769465 GGTGGGTTATCTTCTCCCTCC 59.231 57.143 5.08 5.08 44.29 4.30
5897 6373 1.413077 CGGTGGGTTATCTTCTCCCTC 59.587 57.143 0.00 0.00 41.58 4.30
5898 6374 1.497161 CGGTGGGTTATCTTCTCCCT 58.503 55.000 0.00 0.00 41.58 4.20
5899 6375 0.179054 GCGGTGGGTTATCTTCTCCC 60.179 60.000 0.00 0.00 41.41 4.30
6059 6536 2.882137 CAGTGTCGCCTTTCCCTAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
6060 6537 2.500229 CAGTGTCGCCTTTCCCTAAAA 58.500 47.619 0.00 0.00 0.00 1.52
6061 6538 1.271163 CCAGTGTCGCCTTTCCCTAAA 60.271 52.381 0.00 0.00 0.00 1.85
6062 6539 0.323629 CCAGTGTCGCCTTTCCCTAA 59.676 55.000 0.00 0.00 0.00 2.69
6063 6540 1.980052 CCAGTGTCGCCTTTCCCTA 59.020 57.895 0.00 0.00 0.00 3.53
6064 6541 2.750350 CCAGTGTCGCCTTTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
6065 6542 3.056328 GCCAGTGTCGCCTTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
6066 6543 3.056328 GGCCAGTGTCGCCTTTCC 61.056 66.667 0.00 0.00 43.48 3.13
6072 6549 2.165301 GTACGATGGCCAGTGTCGC 61.165 63.158 23.65 11.58 38.85 5.19
6073 6550 0.736636 TAGTACGATGGCCAGTGTCG 59.263 55.000 22.45 22.45 40.91 4.35
6074 6551 1.749634 ACTAGTACGATGGCCAGTGTC 59.250 52.381 13.05 2.56 0.00 3.67
6075 6552 1.749634 GACTAGTACGATGGCCAGTGT 59.250 52.381 13.05 14.88 0.00 3.55
6076 6553 1.268589 CGACTAGTACGATGGCCAGTG 60.269 57.143 13.05 8.73 0.00 3.66
6077 6554 1.022735 CGACTAGTACGATGGCCAGT 58.977 55.000 13.05 7.31 0.00 4.00
6078 6555 1.022735 ACGACTAGTACGATGGCCAG 58.977 55.000 13.05 0.00 34.70 4.85
6079 6556 0.736636 CACGACTAGTACGATGGCCA 59.263 55.000 8.56 8.56 34.70 5.36
6080 6557 1.019673 TCACGACTAGTACGATGGCC 58.980 55.000 17.67 0.00 34.70 5.36
6081 6558 2.097142 AGTTCACGACTAGTACGATGGC 59.903 50.000 17.67 8.06 36.65 4.40
6082 6559 3.543656 CGAGTTCACGACTAGTACGATGG 60.544 52.174 17.67 9.23 39.19 3.51
6083 6560 3.061831 ACGAGTTCACGACTAGTACGATG 59.938 47.826 17.67 12.79 41.64 3.84
6084 6561 3.061831 CACGAGTTCACGACTAGTACGAT 59.938 47.826 17.67 3.93 41.53 3.73
6085 6562 2.409715 CACGAGTTCACGACTAGTACGA 59.590 50.000 17.67 3.55 41.53 3.43
6086 6563 2.409715 TCACGAGTTCACGACTAGTACG 59.590 50.000 0.00 4.23 41.53 3.67
6087 6564 4.092529 TGATCACGAGTTCACGACTAGTAC 59.907 45.833 0.00 0.00 41.53 2.73
6088 6565 4.092529 GTGATCACGAGTTCACGACTAGTA 59.907 45.833 10.69 0.00 41.53 1.82
6089 6566 3.072211 TGATCACGAGTTCACGACTAGT 58.928 45.455 0.00 0.00 43.85 2.57
6090 6567 3.125487 AGTGATCACGAGTTCACGACTAG 59.875 47.826 19.85 0.00 45.07 2.57
6091 6568 3.072211 AGTGATCACGAGTTCACGACTA 58.928 45.455 19.85 0.00 45.07 2.59
6092 6569 1.880675 AGTGATCACGAGTTCACGACT 59.119 47.619 19.85 0.00 45.07 4.18
6093 6570 2.243407 GAGTGATCACGAGTTCACGAC 58.757 52.381 19.85 11.27 45.07 4.34
6094 6571 1.136057 CGAGTGATCACGAGTTCACGA 60.136 52.381 19.85 0.00 45.07 4.35
6095 6572 1.251355 CGAGTGATCACGAGTTCACG 58.749 55.000 19.85 13.23 45.07 4.35
6096 6573 1.618861 CCGAGTGATCACGAGTTCAC 58.381 55.000 19.85 14.02 42.26 3.18
6097 6574 0.109272 GCCGAGTGATCACGAGTTCA 60.109 55.000 19.85 0.00 36.20 3.18
6098 6575 1.134530 CGCCGAGTGATCACGAGTTC 61.135 60.000 19.85 11.02 36.20 3.01
6099 6576 1.154016 CGCCGAGTGATCACGAGTT 60.154 57.895 19.85 2.34 36.20 3.01
6100 6577 2.485582 CGCCGAGTGATCACGAGT 59.514 61.111 19.85 2.74 36.20 4.18
6101 6578 2.278206 CCGCCGAGTGATCACGAG 60.278 66.667 19.85 16.64 36.20 4.18
6102 6579 4.492160 GCCGCCGAGTGATCACGA 62.492 66.667 19.85 0.00 36.20 4.35
6104 6581 4.796231 ACGCCGCCGAGTGATCAC 62.796 66.667 18.47 18.47 38.29 3.06
6105 6582 4.794439 CACGCCGCCGAGTGATCA 62.794 66.667 2.95 0.00 41.89 2.92
6116 6593 4.807039 CTAACCCCGTCCACGCCG 62.807 72.222 0.00 0.00 38.18 6.46
6117 6594 4.462280 CCTAACCCCGTCCACGCC 62.462 72.222 0.00 0.00 38.18 5.68
6118 6595 1.679559 ATACCTAACCCCGTCCACGC 61.680 60.000 0.00 0.00 38.18 5.34
6119 6596 0.103572 CATACCTAACCCCGTCCACG 59.896 60.000 0.00 0.00 39.44 4.94
6120 6597 0.466963 CCATACCTAACCCCGTCCAC 59.533 60.000 0.00 0.00 0.00 4.02
6121 6598 0.691748 CCCATACCTAACCCCGTCCA 60.692 60.000 0.00 0.00 0.00 4.02
6122 6599 2.048419 GCCCATACCTAACCCCGTCC 62.048 65.000 0.00 0.00 0.00 4.79
6123 6600 1.448924 GCCCATACCTAACCCCGTC 59.551 63.158 0.00 0.00 0.00 4.79
6124 6601 2.074332 GGCCCATACCTAACCCCGT 61.074 63.158 0.00 0.00 0.00 5.28
6125 6602 1.350310 AAGGCCCATACCTAACCCCG 61.350 60.000 0.00 0.00 39.93 5.73
6126 6603 0.477204 GAAGGCCCATACCTAACCCC 59.523 60.000 0.00 0.00 39.93 4.95
6127 6604 1.143073 CAGAAGGCCCATACCTAACCC 59.857 57.143 0.00 0.00 39.93 4.11
6128 6605 1.143073 CCAGAAGGCCCATACCTAACC 59.857 57.143 0.00 0.00 39.93 2.85
6129 6606 1.143073 CCCAGAAGGCCCATACCTAAC 59.857 57.143 0.00 0.00 39.93 2.34
6130 6607 1.518367 CCCAGAAGGCCCATACCTAA 58.482 55.000 0.00 0.00 39.93 2.69
6131 6608 0.401395 CCCCAGAAGGCCCATACCTA 60.401 60.000 0.00 0.00 39.93 3.08
6132 6609 1.697754 CCCCAGAAGGCCCATACCT 60.698 63.158 0.00 0.00 43.91 3.08
6133 6610 2.927056 CCCCAGAAGGCCCATACC 59.073 66.667 0.00 0.00 0.00 2.73
6153 6630 3.567579 TTGCTCCTTCCGGGCCTTG 62.568 63.158 0.84 0.00 34.39 3.61
6154 6631 3.256960 TTGCTCCTTCCGGGCCTT 61.257 61.111 0.84 0.00 34.39 4.35
6155 6632 4.035102 GTTGCTCCTTCCGGGCCT 62.035 66.667 0.84 0.00 34.39 5.19
6156 6633 3.978571 GAGTTGCTCCTTCCGGGCC 62.979 68.421 0.00 0.00 34.39 5.80
6157 6634 2.436824 GAGTTGCTCCTTCCGGGC 60.437 66.667 0.00 0.00 34.39 6.13
6158 6635 2.269241 GGAGTTGCTCCTTCCGGG 59.731 66.667 0.00 0.00 46.41 5.73
6166 6643 2.164422 GCTGGTTTAATGGGAGTTGCTC 59.836 50.000 0.00 0.00 0.00 4.26
6167 6644 2.171003 GCTGGTTTAATGGGAGTTGCT 58.829 47.619 0.00 0.00 0.00 3.91
6168 6645 1.204704 GGCTGGTTTAATGGGAGTTGC 59.795 52.381 0.00 0.00 0.00 4.17
6169 6646 1.824852 GGGCTGGTTTAATGGGAGTTG 59.175 52.381 0.00 0.00 0.00 3.16
6170 6647 1.431243 TGGGCTGGTTTAATGGGAGTT 59.569 47.619 0.00 0.00 0.00 3.01
6171 6648 1.080638 TGGGCTGGTTTAATGGGAGT 58.919 50.000 0.00 0.00 0.00 3.85
6172 6649 1.474330 GTGGGCTGGTTTAATGGGAG 58.526 55.000 0.00 0.00 0.00 4.30
6173 6650 0.040499 GGTGGGCTGGTTTAATGGGA 59.960 55.000 0.00 0.00 0.00 4.37
6174 6651 0.041090 AGGTGGGCTGGTTTAATGGG 59.959 55.000 0.00 0.00 0.00 4.00
6175 6652 1.937191 AAGGTGGGCTGGTTTAATGG 58.063 50.000 0.00 0.00 0.00 3.16
6176 6653 5.046663 ACAAATAAGGTGGGCTGGTTTAATG 60.047 40.000 0.00 0.00 0.00 1.90
6177 6654 5.090845 ACAAATAAGGTGGGCTGGTTTAAT 58.909 37.500 0.00 0.00 0.00 1.40
6178 6655 4.484912 ACAAATAAGGTGGGCTGGTTTAA 58.515 39.130 0.00 0.00 0.00 1.52
6179 6656 4.120946 ACAAATAAGGTGGGCTGGTTTA 57.879 40.909 0.00 0.00 0.00 2.01
6180 6657 2.970987 ACAAATAAGGTGGGCTGGTTT 58.029 42.857 0.00 0.00 0.00 3.27
6181 6658 2.694616 ACAAATAAGGTGGGCTGGTT 57.305 45.000 0.00 0.00 0.00 3.67
6182 6659 3.818295 TTACAAATAAGGTGGGCTGGT 57.182 42.857 0.00 0.00 0.00 4.00
6183 6660 3.636764 GGATTACAAATAAGGTGGGCTGG 59.363 47.826 0.00 0.00 0.00 4.85
6184 6661 4.536765 AGGATTACAAATAAGGTGGGCTG 58.463 43.478 0.00 0.00 0.00 4.85
6185 6662 4.881157 AGGATTACAAATAAGGTGGGCT 57.119 40.909 0.00 0.00 0.00 5.19
6186 6663 9.392259 GTATATAGGATTACAAATAAGGTGGGC 57.608 37.037 0.00 0.00 0.00 5.36
6187 6664 9.901172 GGTATATAGGATTACAAATAAGGTGGG 57.099 37.037 0.00 0.00 0.00 4.61
6202 6679 9.845214 AGGATCAACTTTGTAGGTATATAGGAT 57.155 33.333 0.00 0.00 0.00 3.24
6203 6680 9.310449 GAGGATCAACTTTGTAGGTATATAGGA 57.690 37.037 0.00 0.00 33.17 2.94
6204 6681 9.090103 TGAGGATCAACTTTGTAGGTATATAGG 57.910 37.037 0.00 0.00 45.97 2.57
6223 6700 6.600032 TCTTCTGAGTAACTGTAGTGAGGATC 59.400 42.308 0.00 0.00 0.00 3.36
6224 6701 6.486056 TCTTCTGAGTAACTGTAGTGAGGAT 58.514 40.000 0.00 0.00 0.00 3.24
6225 6702 5.877491 TCTTCTGAGTAACTGTAGTGAGGA 58.123 41.667 0.00 0.00 0.00 3.71
6226 6703 6.576662 TTCTTCTGAGTAACTGTAGTGAGG 57.423 41.667 0.00 0.00 0.00 3.86
6227 6704 8.873215 TTTTTCTTCTGAGTAACTGTAGTGAG 57.127 34.615 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.