Multiple sequence alignment - TraesCS1B01G444500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G444500 chr1B 100.000 3235 0 0 1 3235 665059714 665062948 0.000000e+00 5975.0
1 TraesCS1B01G444500 chr1B 85.358 922 84 38 1557 2448 665049414 665050314 0.000000e+00 907.0
2 TraesCS1B01G444500 chr1B 86.992 246 22 3 2877 3112 665050312 665050557 5.320000e-68 268.0
3 TraesCS1B01G444500 chr1B 95.455 110 5 0 1 110 532152219 532152110 3.320000e-40 176.0
4 TraesCS1B01G444500 chr1B 95.455 110 5 0 1 110 669335365 669335474 3.320000e-40 176.0
5 TraesCS1B01G444500 chr1B 93.913 115 7 0 1 115 430028523 430028637 1.190000e-39 174.0
6 TraesCS1B01G444500 chr1B 84.211 171 18 3 293 454 665047866 665048036 1.200000e-34 158.0
7 TraesCS1B01G444500 chr1D 93.114 1699 65 28 895 2545 477479435 477481129 0.000000e+00 2442.0
8 TraesCS1B01G444500 chr1D 83.316 977 84 31 1622 2545 477435596 477436546 0.000000e+00 828.0
9 TraesCS1B01G444500 chr1D 91.447 304 21 3 2831 3130 477481447 477481749 2.320000e-111 412.0
10 TraesCS1B01G444500 chr1D 74.522 628 83 47 286 889 477478816 477479390 5.470000e-48 202.0
11 TraesCS1B01G444500 chr1A 93.073 1689 76 25 895 2546 573920706 573922390 0.000000e+00 2433.0
12 TraesCS1B01G444500 chr1A 83.061 980 82 53 1622 2545 573818048 573818999 0.000000e+00 813.0
13 TraesCS1B01G444500 chr1A 91.443 596 41 6 2544 3130 573922471 573923065 0.000000e+00 809.0
14 TraesCS1B01G444500 chr1A 96.296 108 4 0 1 108 537536472 537536579 9.220000e-41 178.0
15 TraesCS1B01G444500 chr1A 77.451 306 39 17 390 676 573920183 573920477 4.320000e-34 156.0
16 TraesCS1B01G444500 chr1A 82.883 111 10 5 1557 1658 573921284 573921394 1.240000e-14 91.6
17 TraesCS1B01G444500 chr1A 89.706 68 3 3 380 445 573816627 573816692 2.070000e-12 84.2
18 TraesCS1B01G444500 chr1A 97.674 43 1 0 113 155 146970819 146970777 1.240000e-09 75.0
19 TraesCS1B01G444500 chr3A 91.518 224 19 0 1987 2210 434069274 434069051 3.130000e-80 309.0
20 TraesCS1B01G444500 chr3A 96.296 108 4 0 1 108 745854661 745854554 9.220000e-41 178.0
21 TraesCS1B01G444500 chr3A 95.455 110 5 0 1 110 710709270 710709379 3.320000e-40 176.0
22 TraesCS1B01G444500 chr3D 88.889 243 25 1 1968 2210 301414168 301414408 6.790000e-77 298.0
23 TraesCS1B01G444500 chr3B 89.732 224 23 0 1987 2210 419965937 419965714 1.470000e-73 287.0
24 TraesCS1B01G444500 chr3B 81.955 133 14 6 1828 1951 13365300 13365431 1.590000e-18 104.0
25 TraesCS1B01G444500 chr3B 95.652 46 2 0 109 154 529675678 529675723 1.240000e-09 75.0
26 TraesCS1B01G444500 chr2B 95.455 110 5 0 1 110 572683807 572683916 3.320000e-40 176.0
27 TraesCS1B01G444500 chr2B 95.455 110 5 0 1 110 697201097 697201206 3.320000e-40 176.0
28 TraesCS1B01G444500 chr2B 97.674 43 1 0 109 151 342252838 342252880 1.240000e-09 75.0
29 TraesCS1B01G444500 chr5A 93.913 115 7 0 1 115 60443776 60443890 1.190000e-39 174.0
30 TraesCS1B01G444500 chr4A 81.567 217 29 9 1984 2196 143252309 143252518 5.550000e-38 169.0
31 TraesCS1B01G444500 chr4A 92.157 51 3 1 109 158 701953108 701953158 1.610000e-08 71.3
32 TraesCS1B01G444500 chr4B 81.106 217 30 9 1984 2196 407056966 407056757 2.580000e-36 163.0
33 TraesCS1B01G444500 chr4B 95.833 48 1 1 109 156 651513990 651514036 3.460000e-10 76.8
34 TraesCS1B01G444500 chr4D 80.093 216 32 8 1984 2195 327719422 327719214 2.010000e-32 150.0
35 TraesCS1B01G444500 chr4D 88.889 54 6 0 112 165 76602234 76602181 2.080000e-07 67.6
36 TraesCS1B01G444500 chr7B 97.727 44 1 0 112 155 124131934 124131891 3.460000e-10 76.8
37 TraesCS1B01G444500 chr7B 97.727 44 1 0 112 155 739246122 739246079 3.460000e-10 76.8
38 TraesCS1B01G444500 chr2A 97.619 42 1 0 112 153 65240030 65239989 4.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G444500 chr1B 665059714 665062948 3234 False 5975.000000 5975 100.000000 1 3235 1 chr1B.!!$F2 3234
1 TraesCS1B01G444500 chr1B 665047866 665050557 2691 False 444.333333 907 85.520333 293 3112 3 chr1B.!!$F4 2819
2 TraesCS1B01G444500 chr1D 477478816 477481749 2933 False 1018.666667 2442 86.361000 286 3130 3 chr1D.!!$F2 2844
3 TraesCS1B01G444500 chr1D 477435596 477436546 950 False 828.000000 828 83.316000 1622 2545 1 chr1D.!!$F1 923
4 TraesCS1B01G444500 chr1A 573920183 573923065 2882 False 872.400000 2433 86.212500 390 3130 4 chr1A.!!$F3 2740
5 TraesCS1B01G444500 chr1A 573816627 573818999 2372 False 448.600000 813 86.383500 380 2545 2 chr1A.!!$F2 2165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.036765 TCACCCCTATGAACGCACAC 60.037 55.0 0.00 0.0 0.00 3.82 F
223 224 0.037590 AGGGCGCCTCAATTTACACA 59.962 50.0 28.56 0.0 0.00 3.72 F
226 227 0.179163 GCGCCTCAATTTACACAGGC 60.179 55.0 0.00 0.0 46.94 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 2174 2.592574 CCGCGTCATGGGCATCAT 60.593 61.111 4.92 0.0 36.31 2.45 R
2195 2772 2.836360 TAGTCGGCGGGGGTGATC 60.836 66.667 7.21 0.0 0.00 2.92 R
2339 2939 1.892209 ACGTCTCCCATTTTGGTGTC 58.108 50.000 0.00 0.0 35.17 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.636282 TCATATACACGCGCATACACT 57.364 42.857 5.73 0.00 0.00 3.55
21 22 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
22 23 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
23 24 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
24 25 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
25 26 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
26 27 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
27 28 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
28 29 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
29 30 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
30 31 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
31 32 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
32 33 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
33 34 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
34 35 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
35 36 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
36 37 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
37 38 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
38 39 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
39 40 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
41 42 2.461110 CCCCTATGAACGCACACGC 61.461 63.158 0.00 0.00 45.53 5.34
52 53 4.605967 CACACGCGCACACCCAAC 62.606 66.667 5.73 0.00 0.00 3.77
58 59 4.676951 CGCACACCCAACCCCCAT 62.677 66.667 0.00 0.00 0.00 4.00
59 60 2.996734 GCACACCCAACCCCCATG 60.997 66.667 0.00 0.00 0.00 3.66
60 61 2.850290 CACACCCAACCCCCATGA 59.150 61.111 0.00 0.00 0.00 3.07
61 62 1.304381 CACACCCAACCCCCATGAG 60.304 63.158 0.00 0.00 0.00 2.90
62 63 2.362889 CACCCAACCCCCATGAGC 60.363 66.667 0.00 0.00 0.00 4.26
63 64 2.863484 ACCCAACCCCCATGAGCA 60.863 61.111 0.00 0.00 0.00 4.26
64 65 2.248374 ACCCAACCCCCATGAGCAT 61.248 57.895 0.00 0.00 0.00 3.79
65 66 1.456331 CCCAACCCCCATGAGCATC 60.456 63.158 0.00 0.00 0.00 3.91
66 67 1.616921 CCAACCCCCATGAGCATCT 59.383 57.895 0.00 0.00 34.92 2.90
67 68 0.466922 CCAACCCCCATGAGCATCTC 60.467 60.000 0.00 0.00 34.92 2.75
68 69 0.466922 CAACCCCCATGAGCATCTCC 60.467 60.000 0.00 0.00 34.92 3.71
69 70 0.920763 AACCCCCATGAGCATCTCCA 60.921 55.000 0.00 0.00 34.92 3.86
70 71 0.920763 ACCCCCATGAGCATCTCCAA 60.921 55.000 0.00 0.00 34.92 3.53
71 72 0.178998 CCCCCATGAGCATCTCCAAG 60.179 60.000 0.00 0.00 34.92 3.61
72 73 0.841961 CCCCATGAGCATCTCCAAGA 59.158 55.000 0.00 0.00 34.92 3.02
73 74 1.202782 CCCCATGAGCATCTCCAAGAG 60.203 57.143 0.00 0.00 34.92 2.85
74 75 1.767088 CCCATGAGCATCTCCAAGAGA 59.233 52.381 0.00 0.00 43.20 3.10
75 76 2.485124 CCCATGAGCATCTCCAAGAGAC 60.485 54.545 0.00 0.00 41.76 3.36
76 77 2.435069 CCATGAGCATCTCCAAGAGACT 59.565 50.000 0.00 0.00 41.76 3.24
77 78 3.459145 CATGAGCATCTCCAAGAGACTG 58.541 50.000 0.00 0.00 41.76 3.51
78 79 2.812658 TGAGCATCTCCAAGAGACTGA 58.187 47.619 0.00 0.00 41.76 3.41
79 80 2.759535 TGAGCATCTCCAAGAGACTGAG 59.240 50.000 0.00 0.00 41.76 3.35
80 81 1.481772 AGCATCTCCAAGAGACTGAGC 59.518 52.381 0.00 0.10 41.76 4.26
81 82 1.473080 GCATCTCCAAGAGACTGAGCC 60.473 57.143 0.00 0.00 41.76 4.70
82 83 1.110442 ATCTCCAAGAGACTGAGCCG 58.890 55.000 0.00 0.00 41.76 5.52
83 84 0.967887 TCTCCAAGAGACTGAGCCGG 60.968 60.000 0.00 0.00 33.35 6.13
84 85 2.125350 CCAAGAGACTGAGCCGGC 60.125 66.667 21.89 21.89 0.00 6.13
85 86 2.659016 CAAGAGACTGAGCCGGCA 59.341 61.111 31.54 7.98 0.00 5.69
86 87 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
87 88 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
88 89 1.069823 CAAGAGACTGAGCCGGCATAT 59.930 52.381 31.54 8.11 0.00 1.78
89 90 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
90 91 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
91 92 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
92 93 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
93 94 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
94 95 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
95 96 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
96 97 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
97 98 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
98 99 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
99 100 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
100 101 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
101 102 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
102 103 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
103 104 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
104 105 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
105 106 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
106 107 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
107 108 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
108 109 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
109 110 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
110 111 4.112634 TCATCTTGAGATTTACGAAGCCG 58.887 43.478 0.00 0.00 35.64 5.52
111 112 2.268298 TCTTGAGATTTACGAAGCCGC 58.732 47.619 0.00 0.00 39.95 6.53
112 113 2.094182 TCTTGAGATTTACGAAGCCGCT 60.094 45.455 0.00 0.00 39.95 5.52
113 114 1.640428 TGAGATTTACGAAGCCGCTG 58.360 50.000 0.00 0.00 39.95 5.18
114 115 1.067142 TGAGATTTACGAAGCCGCTGT 60.067 47.619 0.00 0.00 39.95 4.40
115 116 1.588861 GAGATTTACGAAGCCGCTGTC 59.411 52.381 0.00 0.00 39.95 3.51
116 117 0.651031 GATTTACGAAGCCGCTGTCC 59.349 55.000 0.00 0.00 39.95 4.02
117 118 0.036765 ATTTACGAAGCCGCTGTCCA 60.037 50.000 0.00 0.00 39.95 4.02
118 119 0.947180 TTTACGAAGCCGCTGTCCAC 60.947 55.000 0.00 0.00 39.95 4.02
119 120 2.775032 TTACGAAGCCGCTGTCCACC 62.775 60.000 0.00 0.00 39.95 4.61
120 121 4.379243 CGAAGCCGCTGTCCACCT 62.379 66.667 0.00 0.00 0.00 4.00
121 122 2.978824 GAAGCCGCTGTCCACCTA 59.021 61.111 0.00 0.00 0.00 3.08
122 123 1.295423 GAAGCCGCTGTCCACCTAA 59.705 57.895 0.00 0.00 0.00 2.69
123 124 1.003718 AAGCCGCTGTCCACCTAAC 60.004 57.895 0.00 0.00 0.00 2.34
124 125 2.436115 GCCGCTGTCCACCTAACC 60.436 66.667 0.00 0.00 0.00 2.85
125 126 3.065306 CCGCTGTCCACCTAACCA 58.935 61.111 0.00 0.00 0.00 3.67
126 127 1.602237 CCGCTGTCCACCTAACCAT 59.398 57.895 0.00 0.00 0.00 3.55
127 128 0.462047 CCGCTGTCCACCTAACCATC 60.462 60.000 0.00 0.00 0.00 3.51
128 129 0.537188 CGCTGTCCACCTAACCATCT 59.463 55.000 0.00 0.00 0.00 2.90
129 130 1.471676 CGCTGTCCACCTAACCATCTC 60.472 57.143 0.00 0.00 0.00 2.75
130 131 1.555075 GCTGTCCACCTAACCATCTCA 59.445 52.381 0.00 0.00 0.00 3.27
131 132 2.027192 GCTGTCCACCTAACCATCTCAA 60.027 50.000 0.00 0.00 0.00 3.02
132 133 3.600388 CTGTCCACCTAACCATCTCAAC 58.400 50.000 0.00 0.00 0.00 3.18
133 134 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
134 135 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
135 136 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
136 137 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
137 138 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
138 139 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
139 140 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
149 150 3.834726 CCACAGGTTGGTTCGCAA 58.165 55.556 0.00 0.00 41.10 4.85
150 151 2.111162 CCACAGGTTGGTTCGCAAA 58.889 52.632 0.00 0.00 41.10 3.68
151 152 0.457851 CCACAGGTTGGTTCGCAAAA 59.542 50.000 0.00 0.00 41.10 2.44
152 153 1.535860 CCACAGGTTGGTTCGCAAAAG 60.536 52.381 0.00 0.00 41.10 2.27
153 154 1.403679 CACAGGTTGGTTCGCAAAAGA 59.596 47.619 0.00 0.00 0.00 2.52
154 155 2.096248 ACAGGTTGGTTCGCAAAAGAA 58.904 42.857 0.00 0.00 0.00 2.52
155 156 2.099098 ACAGGTTGGTTCGCAAAAGAAG 59.901 45.455 0.00 0.00 0.00 2.85
156 157 2.357637 CAGGTTGGTTCGCAAAAGAAGA 59.642 45.455 0.00 0.00 0.00 2.87
157 158 2.357952 AGGTTGGTTCGCAAAAGAAGAC 59.642 45.455 0.00 0.00 0.00 3.01
158 159 2.543031 GGTTGGTTCGCAAAAGAAGACC 60.543 50.000 0.00 0.00 0.00 3.85
159 160 2.045561 TGGTTCGCAAAAGAAGACCA 57.954 45.000 0.00 0.00 0.00 4.02
160 161 2.370349 TGGTTCGCAAAAGAAGACCAA 58.630 42.857 0.00 0.00 0.00 3.67
161 162 2.098443 TGGTTCGCAAAAGAAGACCAAC 59.902 45.455 0.00 0.00 0.00 3.77
162 163 2.357952 GGTTCGCAAAAGAAGACCAACT 59.642 45.455 0.00 0.00 0.00 3.16
163 164 3.181490 GGTTCGCAAAAGAAGACCAACTT 60.181 43.478 0.00 0.00 42.03 2.66
164 165 3.691049 TCGCAAAAGAAGACCAACTTG 57.309 42.857 0.00 0.00 39.13 3.16
165 166 3.275143 TCGCAAAAGAAGACCAACTTGA 58.725 40.909 0.00 0.00 39.13 3.02
166 167 3.064820 TCGCAAAAGAAGACCAACTTGAC 59.935 43.478 0.00 0.00 39.13 3.18
167 168 3.181501 CGCAAAAGAAGACCAACTTGACA 60.182 43.478 0.00 0.00 39.13 3.58
168 169 4.354587 GCAAAAGAAGACCAACTTGACAG 58.645 43.478 0.00 0.00 39.13 3.51
169 170 4.734695 GCAAAAGAAGACCAACTTGACAGG 60.735 45.833 0.00 0.00 39.13 4.00
170 171 3.933861 AAGAAGACCAACTTGACAGGT 57.066 42.857 0.00 0.00 39.13 4.00
171 172 3.933861 AGAAGACCAACTTGACAGGTT 57.066 42.857 0.00 0.00 39.13 3.50
172 173 4.236527 AGAAGACCAACTTGACAGGTTT 57.763 40.909 0.00 0.00 39.13 3.27
173 174 5.367945 AGAAGACCAACTTGACAGGTTTA 57.632 39.130 0.00 0.00 39.13 2.01
174 175 5.751586 AGAAGACCAACTTGACAGGTTTAA 58.248 37.500 0.00 0.00 39.13 1.52
175 176 5.823045 AGAAGACCAACTTGACAGGTTTAAG 59.177 40.000 0.00 0.00 39.13 1.85
176 177 3.883489 AGACCAACTTGACAGGTTTAAGC 59.117 43.478 0.00 0.00 35.36 3.09
177 178 3.883489 GACCAACTTGACAGGTTTAAGCT 59.117 43.478 0.00 0.00 35.36 3.74
178 179 5.043737 ACCAACTTGACAGGTTTAAGCTA 57.956 39.130 0.00 0.00 29.58 3.32
179 180 4.820173 ACCAACTTGACAGGTTTAAGCTAC 59.180 41.667 0.00 0.00 29.58 3.58
180 181 4.084013 CCAACTTGACAGGTTTAAGCTACG 60.084 45.833 0.00 0.00 0.00 3.51
181 182 3.660865 ACTTGACAGGTTTAAGCTACGG 58.339 45.455 0.00 0.00 0.00 4.02
182 183 3.322828 ACTTGACAGGTTTAAGCTACGGA 59.677 43.478 0.00 0.00 0.00 4.69
183 184 3.587797 TGACAGGTTTAAGCTACGGAG 57.412 47.619 0.00 0.00 0.00 4.63
184 185 3.159472 TGACAGGTTTAAGCTACGGAGA 58.841 45.455 0.00 0.00 0.00 3.71
185 186 3.575256 TGACAGGTTTAAGCTACGGAGAA 59.425 43.478 0.00 0.00 0.00 2.87
186 187 4.039488 TGACAGGTTTAAGCTACGGAGAAA 59.961 41.667 0.00 0.00 0.00 2.52
187 188 4.313282 ACAGGTTTAAGCTACGGAGAAAC 58.687 43.478 0.00 0.00 0.00 2.78
188 189 4.040095 ACAGGTTTAAGCTACGGAGAAACT 59.960 41.667 0.00 0.00 32.00 2.66
189 190 4.995487 CAGGTTTAAGCTACGGAGAAACTT 59.005 41.667 0.00 0.00 32.00 2.66
190 191 6.161381 CAGGTTTAAGCTACGGAGAAACTTA 58.839 40.000 0.00 0.00 32.00 2.24
191 192 6.090493 CAGGTTTAAGCTACGGAGAAACTTAC 59.910 42.308 0.00 0.00 32.00 2.34
192 193 5.928264 GGTTTAAGCTACGGAGAAACTTACA 59.072 40.000 0.00 0.00 32.00 2.41
193 194 6.592994 GGTTTAAGCTACGGAGAAACTTACAT 59.407 38.462 0.00 0.00 32.00 2.29
194 195 7.412672 GGTTTAAGCTACGGAGAAACTTACATG 60.413 40.741 0.00 0.00 32.00 3.21
195 196 4.803098 AGCTACGGAGAAACTTACATGT 57.197 40.909 0.00 2.69 0.00 3.21
196 197 4.495422 AGCTACGGAGAAACTTACATGTG 58.505 43.478 9.11 0.00 0.00 3.21
197 198 3.617263 GCTACGGAGAAACTTACATGTGG 59.383 47.826 9.11 3.79 0.00 4.17
198 199 3.053831 ACGGAGAAACTTACATGTGGG 57.946 47.619 9.11 3.41 0.00 4.61
199 200 2.290071 ACGGAGAAACTTACATGTGGGG 60.290 50.000 9.11 0.73 0.00 4.96
200 201 2.092323 GGAGAAACTTACATGTGGGGC 58.908 52.381 9.11 0.00 0.00 5.80
201 202 2.092323 GAGAAACTTACATGTGGGGCC 58.908 52.381 9.11 0.00 0.00 5.80
202 203 0.808755 GAAACTTACATGTGGGGCCG 59.191 55.000 9.11 0.00 0.00 6.13
203 204 0.610785 AAACTTACATGTGGGGCCGG 60.611 55.000 9.11 0.00 0.00 6.13
204 205 1.493854 AACTTACATGTGGGGCCGGA 61.494 55.000 5.05 0.00 0.00 5.14
205 206 1.153168 CTTACATGTGGGGCCGGAG 60.153 63.158 5.05 0.00 0.00 4.63
222 223 2.868253 AGGGCGCCTCAATTTACAC 58.132 52.632 28.56 4.97 0.00 2.90
223 224 0.037590 AGGGCGCCTCAATTTACACA 59.962 50.000 28.56 0.00 0.00 3.72
224 225 0.451783 GGGCGCCTCAATTTACACAG 59.548 55.000 28.56 0.00 0.00 3.66
225 226 0.451783 GGCGCCTCAATTTACACAGG 59.548 55.000 22.15 0.00 0.00 4.00
226 227 0.179163 GCGCCTCAATTTACACAGGC 60.179 55.000 0.00 0.00 46.94 4.85
228 229 0.451783 GCCTCAATTTACACAGGCCG 59.548 55.000 0.00 0.00 45.04 6.13
229 230 1.821216 CCTCAATTTACACAGGCCGT 58.179 50.000 0.00 0.00 0.00 5.68
290 291 1.377202 CGGGTTGTGGATGGTGGAG 60.377 63.158 0.00 0.00 0.00 3.86
345 351 2.505777 CTGTCCAGCGCAGAGACG 60.506 66.667 11.47 6.11 36.12 4.18
372 378 3.337889 CGCACACTGGACACACCG 61.338 66.667 0.00 0.00 42.61 4.94
388 398 3.006728 CGGCCTACCCCTGGTTCA 61.007 66.667 0.00 0.00 37.09 3.18
399 409 1.451504 CTGGTTCAGGACACTGCCA 59.548 57.895 0.00 0.00 44.54 4.92
400 410 0.886490 CTGGTTCAGGACACTGCCAC 60.886 60.000 0.00 0.00 44.54 5.01
465 490 2.935505 GTGGCCACGGTTACATTCA 58.064 52.632 22.49 0.00 0.00 2.57
467 492 0.398696 TGGCCACGGTTACATTCAGT 59.601 50.000 0.00 0.00 0.00 3.41
468 493 0.802494 GGCCACGGTTACATTCAGTG 59.198 55.000 0.00 0.00 0.00 3.66
488 513 2.352032 CCAGTGACGTCCTCCTCCC 61.352 68.421 14.12 0.00 0.00 4.30
489 514 1.304547 CAGTGACGTCCTCCTCCCT 60.305 63.158 14.12 0.00 0.00 4.20
663 747 5.402568 ACTCGATCGGTGATTGATTATTTCG 59.597 40.000 16.41 0.00 32.71 3.46
677 768 0.949105 ATTTCGGTTGCGTTCGCTCT 60.949 50.000 17.63 0.00 0.00 4.09
678 769 1.554042 TTTCGGTTGCGTTCGCTCTC 61.554 55.000 17.63 8.14 0.00 3.20
681 772 2.437343 GGTTGCGTTCGCTCTCTCG 61.437 63.158 17.63 0.00 0.00 4.04
684 775 2.403987 GCGTTCGCTCTCTCGCTA 59.596 61.111 9.99 0.00 44.28 4.26
685 776 1.652930 GCGTTCGCTCTCTCGCTAG 60.653 63.158 9.99 0.00 44.28 3.42
686 777 2.007549 CGTTCGCTCTCTCGCTAGA 58.992 57.895 0.00 0.00 0.00 2.43
688 779 1.003331 CGTTCGCTCTCTCGCTAGATT 60.003 52.381 0.00 0.00 0.00 2.40
690 781 3.120477 CGTTCGCTCTCTCGCTAGATTAT 60.120 47.826 0.00 0.00 0.00 1.28
692 783 5.216648 GTTCGCTCTCTCGCTAGATTATTT 58.783 41.667 0.00 0.00 0.00 1.40
693 784 5.037015 TCGCTCTCTCGCTAGATTATTTC 57.963 43.478 0.00 0.00 0.00 2.17
697 788 5.106634 GCTCTCTCGCTAGATTATTTCGGTA 60.107 44.000 0.00 0.00 0.00 4.02
726 818 0.950836 CGTTTCTGGGTGTGCATTGA 59.049 50.000 0.00 0.00 0.00 2.57
727 819 1.541147 CGTTTCTGGGTGTGCATTGAT 59.459 47.619 0.00 0.00 0.00 2.57
740 833 0.740868 CATTGATGCGGGTCGTGTCT 60.741 55.000 0.00 0.00 0.00 3.41
748 841 2.430921 GGTCGTGTCTGTGCTCCG 60.431 66.667 0.00 0.00 0.00 4.63
749 842 2.643272 GTCGTGTCTGTGCTCCGA 59.357 61.111 0.00 0.00 0.00 4.55
750 843 1.442857 GTCGTGTCTGTGCTCCGAG 60.443 63.158 0.00 0.00 0.00 4.63
751 844 1.599797 TCGTGTCTGTGCTCCGAGA 60.600 57.895 0.00 0.00 0.00 4.04
752 845 0.960861 TCGTGTCTGTGCTCCGAGAT 60.961 55.000 0.00 0.00 0.00 2.75
755 848 0.960861 TGTCTGTGCTCCGAGATCGT 60.961 55.000 0.00 0.00 37.74 3.73
759 853 1.136984 GTGCTCCGAGATCGTTCGT 59.863 57.895 0.00 0.00 38.88 3.85
761 855 1.136984 GCTCCGAGATCGTTCGTGT 59.863 57.895 0.00 0.00 38.88 4.49
777 871 1.002142 CGTGTCGTGTCTCTGTTGGTA 60.002 52.381 0.00 0.00 0.00 3.25
782 876 3.921021 GTCGTGTCTCTGTTGGTAGATTG 59.079 47.826 0.00 0.00 0.00 2.67
783 877 3.824443 TCGTGTCTCTGTTGGTAGATTGA 59.176 43.478 0.00 0.00 0.00 2.57
806 903 1.104577 TTCCTTTTTGTTCGCCGCCT 61.105 50.000 0.00 0.00 0.00 5.52
844 986 0.674581 TCTGATCCTGCGCTTTGGTG 60.675 55.000 9.73 2.07 0.00 4.17
845 987 0.957395 CTGATCCTGCGCTTTGGTGT 60.957 55.000 9.73 2.33 0.00 4.16
903 1154 0.243636 GGGTGGTTTATGTGCTGCAC 59.756 55.000 25.15 25.15 34.56 4.57
1565 2121 3.839432 CTCCCCGACCGAGAAGCC 61.839 72.222 0.00 0.00 0.00 4.35
1630 2186 2.832778 CCCCCGATGATGCCCATGA 61.833 63.158 0.00 0.00 35.17 3.07
1713 2269 1.592669 CGGCTACCTGAAGATGGCG 60.593 63.158 0.00 0.00 39.98 5.69
1902 2467 3.851128 TGTTCGTGGGCGTGGACA 61.851 61.111 0.00 0.00 39.49 4.02
2145 2722 3.005539 AGGTCTGCCGCATGGTCT 61.006 61.111 0.00 0.00 40.50 3.85
2195 2772 4.680237 TGCCACTTCCGCCACTCG 62.680 66.667 0.00 0.00 38.08 4.18
2215 2792 3.834799 CACCCCCGCCGACTACTC 61.835 72.222 0.00 0.00 0.00 2.59
2279 2879 0.534873 GCTTCACTCCCTCACTCCTC 59.465 60.000 0.00 0.00 0.00 3.71
2280 2880 1.930251 CTTCACTCCCTCACTCCTCA 58.070 55.000 0.00 0.00 0.00 3.86
2284 2884 0.040499 ACTCCCTCACTCCTCACTCC 59.960 60.000 0.00 0.00 0.00 3.85
2285 2885 0.334676 CTCCCTCACTCCTCACTCCT 59.665 60.000 0.00 0.00 0.00 3.69
2287 2887 1.190643 CCCTCACTCCTCACTCCTTC 58.809 60.000 0.00 0.00 0.00 3.46
2290 2890 0.252284 TCACTCCTCACTCCTTCCCC 60.252 60.000 0.00 0.00 0.00 4.81
2339 2939 4.201901 GCCACATTGGAAAACAAACCAAAG 60.202 41.667 0.00 0.00 46.87 2.77
2371 2971 4.653868 TGGGAGACGTAAATAAGGCAAAA 58.346 39.130 0.00 0.00 0.00 2.44
2375 2975 7.094631 GGGAGACGTAAATAAGGCAAAATTTT 58.905 34.615 0.00 0.00 0.00 1.82
2474 3084 5.128008 AGCTGCTTTTTGGGTTACTTTACAA 59.872 36.000 0.00 0.00 0.00 2.41
2546 3157 2.224917 GGGGTTGTTCCTTACATGGTCA 60.225 50.000 0.00 0.00 36.44 4.02
2547 3158 3.563479 GGGGTTGTTCCTTACATGGTCAT 60.563 47.826 0.00 0.00 36.44 3.06
2548 3159 3.694566 GGGTTGTTCCTTACATGGTCATC 59.305 47.826 0.00 0.00 36.44 2.92
2549 3160 4.331968 GGTTGTTCCTTACATGGTCATCA 58.668 43.478 0.00 0.00 36.44 3.07
2550 3161 4.396166 GGTTGTTCCTTACATGGTCATCAG 59.604 45.833 0.00 0.00 36.44 2.90
2698 3392 9.481340 CTATATGATTTTTGAAGGATGTCGAGA 57.519 33.333 0.00 0.00 0.00 4.04
2740 3434 3.906720 TGCCTATAGTTTCTGTGGGTC 57.093 47.619 0.00 0.00 0.00 4.46
2768 3465 3.397482 GTTGATCTGGGATTCTGGATCG 58.603 50.000 0.00 0.00 37.84 3.69
2816 3514 4.264038 GGGGGTCCTTTCTTACATGGTTTA 60.264 45.833 0.00 0.00 0.00 2.01
2817 3515 5.516044 GGGGTCCTTTCTTACATGGTTTAT 58.484 41.667 0.00 0.00 0.00 1.40
2844 3543 4.093472 AGCCATTGGTTACAGTTACACA 57.907 40.909 4.26 0.00 0.00 3.72
2859 3558 7.107542 ACAGTTACACAAACTTGTTCCTTAGA 58.892 34.615 0.00 0.00 46.61 2.10
2874 3573 3.260884 TCCTTAGATGCGTTTTGAGAGGT 59.739 43.478 0.00 0.00 0.00 3.85
2910 3609 5.892568 AGCGATGTAACTAAACCTGAGTAG 58.107 41.667 0.00 0.00 0.00 2.57
2949 3648 3.971305 TGGTACTGTCTTCTGGAAGGAAA 59.029 43.478 10.01 0.00 38.88 3.13
2973 3679 3.508012 TCAGGCTACTTCAGACTTCAGTC 59.492 47.826 0.00 0.00 41.20 3.51
2974 3680 3.256879 CAGGCTACTTCAGACTTCAGTCA 59.743 47.826 9.62 0.00 41.20 3.41
2987 3693 6.428385 GACTTCAGTCATATTGTTTCCCTG 57.572 41.667 1.86 0.00 44.18 4.45
3102 3811 5.940470 TCTGTTTTCTCCTCATCTTTAAGCC 59.060 40.000 0.00 0.00 0.00 4.35
3112 3821 4.191544 TCATCTTTAAGCCTGATGTTCCG 58.808 43.478 0.00 0.00 38.78 4.30
3113 3822 3.973206 TCTTTAAGCCTGATGTTCCGA 57.027 42.857 0.00 0.00 0.00 4.55
3114 3823 3.861840 TCTTTAAGCCTGATGTTCCGAG 58.138 45.455 0.00 0.00 0.00 4.63
3130 3839 1.133407 CCGAGTCCTAACTGCAGTCTC 59.867 57.143 21.95 19.59 35.28 3.36
3131 3840 1.813178 CGAGTCCTAACTGCAGTCTCA 59.187 52.381 21.95 7.70 35.28 3.27
3132 3841 2.229062 CGAGTCCTAACTGCAGTCTCAA 59.771 50.000 21.95 3.72 35.28 3.02
3133 3842 3.305403 CGAGTCCTAACTGCAGTCTCAAA 60.305 47.826 21.95 2.16 35.28 2.69
3134 3843 4.632153 GAGTCCTAACTGCAGTCTCAAAA 58.368 43.478 21.95 0.99 35.28 2.44
3135 3844 4.381411 AGTCCTAACTGCAGTCTCAAAAC 58.619 43.478 21.95 13.44 33.32 2.43
3136 3845 4.127171 GTCCTAACTGCAGTCTCAAAACA 58.873 43.478 21.95 0.00 0.00 2.83
3137 3846 4.757149 GTCCTAACTGCAGTCTCAAAACAT 59.243 41.667 21.95 3.19 0.00 2.71
3138 3847 5.932303 GTCCTAACTGCAGTCTCAAAACATA 59.068 40.000 21.95 4.34 0.00 2.29
3139 3848 5.932303 TCCTAACTGCAGTCTCAAAACATAC 59.068 40.000 21.95 0.00 0.00 2.39
3140 3849 5.700832 CCTAACTGCAGTCTCAAAACATACA 59.299 40.000 21.95 0.00 0.00 2.29
3141 3850 6.372659 CCTAACTGCAGTCTCAAAACATACAT 59.627 38.462 21.95 1.06 0.00 2.29
3142 3851 7.549134 CCTAACTGCAGTCTCAAAACATACATA 59.451 37.037 21.95 2.34 0.00 2.29
3143 3852 7.744087 AACTGCAGTCTCAAAACATACATAA 57.256 32.000 21.95 0.00 0.00 1.90
3144 3853 7.133891 ACTGCAGTCTCAAAACATACATAAC 57.866 36.000 15.25 0.00 0.00 1.89
3145 3854 6.710295 ACTGCAGTCTCAAAACATACATAACA 59.290 34.615 15.25 0.00 0.00 2.41
3146 3855 7.391554 ACTGCAGTCTCAAAACATACATAACAT 59.608 33.333 15.25 0.00 0.00 2.71
3147 3856 7.529158 TGCAGTCTCAAAACATACATAACATG 58.471 34.615 0.00 0.00 0.00 3.21
3148 3857 7.174772 TGCAGTCTCAAAACATACATAACATGT 59.825 33.333 0.00 0.00 46.92 3.21
3149 3858 7.693951 GCAGTCTCAAAACATACATAACATGTC 59.306 37.037 0.00 0.00 43.67 3.06
3150 3859 7.899841 CAGTCTCAAAACATACATAACATGTCG 59.100 37.037 0.00 0.00 43.67 4.35
3151 3860 7.602644 AGTCTCAAAACATACATAACATGTCGT 59.397 33.333 0.00 0.00 43.67 4.34
3152 3861 8.865978 GTCTCAAAACATACATAACATGTCGTA 58.134 33.333 0.00 1.86 43.67 3.43
3153 3862 8.865978 TCTCAAAACATACATAACATGTCGTAC 58.134 33.333 0.00 0.00 43.67 3.67
3154 3863 8.535690 TCAAAACATACATAACATGTCGTACA 57.464 30.769 0.00 0.00 43.67 2.90
3155 3864 9.157104 TCAAAACATACATAACATGTCGTACAT 57.843 29.630 0.00 0.00 43.67 2.29
3160 3869 9.974980 ACATACATAACATGTCGTACATAATGA 57.025 29.630 0.00 0.00 43.67 2.57
3163 3872 8.138365 ACATAACATGTCGTACATAATGAACC 57.862 34.615 0.00 0.00 39.92 3.62
3164 3873 5.712217 AACATGTCGTACATAATGAACCG 57.288 39.130 0.00 0.00 36.53 4.44
3165 3874 4.751060 ACATGTCGTACATAATGAACCGT 58.249 39.130 0.00 0.00 36.53 4.83
3166 3875 4.565166 ACATGTCGTACATAATGAACCGTG 59.435 41.667 0.00 0.00 36.53 4.94
3167 3876 4.437772 TGTCGTACATAATGAACCGTGA 57.562 40.909 0.00 0.00 0.00 4.35
3168 3877 4.807443 TGTCGTACATAATGAACCGTGAA 58.193 39.130 0.00 0.00 0.00 3.18
3169 3878 5.412640 TGTCGTACATAATGAACCGTGAAT 58.587 37.500 0.00 0.00 0.00 2.57
3170 3879 6.562518 TGTCGTACATAATGAACCGTGAATA 58.437 36.000 0.00 0.00 0.00 1.75
3171 3880 7.204604 TGTCGTACATAATGAACCGTGAATAT 58.795 34.615 0.00 0.00 0.00 1.28
3172 3881 7.168469 TGTCGTACATAATGAACCGTGAATATG 59.832 37.037 0.00 0.00 0.00 1.78
3173 3882 7.168637 GTCGTACATAATGAACCGTGAATATGT 59.831 37.037 0.00 0.00 37.62 2.29
3174 3883 7.168469 TCGTACATAATGAACCGTGAATATGTG 59.832 37.037 6.51 0.00 35.98 3.21
3175 3884 6.060028 ACATAATGAACCGTGAATATGTGC 57.940 37.500 0.00 0.00 33.89 4.57
3176 3885 5.822519 ACATAATGAACCGTGAATATGTGCT 59.177 36.000 0.00 0.00 33.89 4.40
3177 3886 4.621068 AATGAACCGTGAATATGTGCTG 57.379 40.909 0.00 0.00 0.00 4.41
3178 3887 3.326836 TGAACCGTGAATATGTGCTGA 57.673 42.857 0.00 0.00 0.00 4.26
3179 3888 3.872696 TGAACCGTGAATATGTGCTGAT 58.127 40.909 0.00 0.00 0.00 2.90
3180 3889 3.871006 TGAACCGTGAATATGTGCTGATC 59.129 43.478 0.00 0.00 0.00 2.92
3181 3890 3.541996 ACCGTGAATATGTGCTGATCA 57.458 42.857 0.00 0.00 0.00 2.92
3182 3891 3.872696 ACCGTGAATATGTGCTGATCAA 58.127 40.909 0.00 0.00 0.00 2.57
3183 3892 3.623060 ACCGTGAATATGTGCTGATCAAC 59.377 43.478 0.00 0.00 0.00 3.18
3184 3893 3.302675 CCGTGAATATGTGCTGATCAACG 60.303 47.826 0.00 0.00 0.00 4.10
3185 3894 3.302675 CGTGAATATGTGCTGATCAACGG 60.303 47.826 0.00 0.00 0.00 4.44
3186 3895 3.623060 GTGAATATGTGCTGATCAACGGT 59.377 43.478 0.00 0.00 0.00 4.83
3187 3896 3.622612 TGAATATGTGCTGATCAACGGTG 59.377 43.478 0.00 0.00 0.00 4.94
3188 3897 2.022764 TATGTGCTGATCAACGGTGG 57.977 50.000 0.00 0.00 0.00 4.61
3189 3898 1.308069 ATGTGCTGATCAACGGTGGC 61.308 55.000 0.00 0.00 0.00 5.01
3190 3899 1.672356 GTGCTGATCAACGGTGGCT 60.672 57.895 0.00 0.00 0.00 4.75
3191 3900 0.391130 GTGCTGATCAACGGTGGCTA 60.391 55.000 0.00 0.00 0.00 3.93
3192 3901 0.108186 TGCTGATCAACGGTGGCTAG 60.108 55.000 0.00 0.00 0.00 3.42
3193 3902 0.108138 GCTGATCAACGGTGGCTAGT 60.108 55.000 0.00 0.00 0.00 2.57
3194 3903 1.927895 CTGATCAACGGTGGCTAGTC 58.072 55.000 0.00 0.00 0.00 2.59
3195 3904 1.478510 CTGATCAACGGTGGCTAGTCT 59.521 52.381 0.00 0.00 0.00 3.24
3196 3905 1.204704 TGATCAACGGTGGCTAGTCTG 59.795 52.381 0.00 0.00 0.00 3.51
3197 3906 1.204941 GATCAACGGTGGCTAGTCTGT 59.795 52.381 0.00 0.00 0.00 3.41
3198 3907 0.601558 TCAACGGTGGCTAGTCTGTC 59.398 55.000 0.00 0.00 0.00 3.51
3199 3908 0.317160 CAACGGTGGCTAGTCTGTCA 59.683 55.000 0.00 0.00 0.00 3.58
3200 3909 0.603569 AACGGTGGCTAGTCTGTCAG 59.396 55.000 0.00 0.00 0.00 3.51
3201 3910 0.539901 ACGGTGGCTAGTCTGTCAGT 60.540 55.000 0.00 0.00 0.00 3.41
3202 3911 1.271762 ACGGTGGCTAGTCTGTCAGTA 60.272 52.381 0.00 0.00 0.00 2.74
3203 3912 1.816835 CGGTGGCTAGTCTGTCAGTAA 59.183 52.381 0.00 0.00 0.00 2.24
3204 3913 2.427453 CGGTGGCTAGTCTGTCAGTAAT 59.573 50.000 0.00 0.00 0.00 1.89
3205 3914 3.119101 CGGTGGCTAGTCTGTCAGTAATT 60.119 47.826 0.00 0.00 0.00 1.40
3206 3915 4.097437 CGGTGGCTAGTCTGTCAGTAATTA 59.903 45.833 0.00 0.00 0.00 1.40
3207 3916 5.221263 CGGTGGCTAGTCTGTCAGTAATTAT 60.221 44.000 0.00 0.00 0.00 1.28
3208 3917 6.217294 GGTGGCTAGTCTGTCAGTAATTATC 58.783 44.000 0.00 0.00 0.00 1.75
3209 3918 5.915758 GTGGCTAGTCTGTCAGTAATTATCG 59.084 44.000 0.00 0.00 0.00 2.92
3210 3919 5.593095 TGGCTAGTCTGTCAGTAATTATCGT 59.407 40.000 0.00 0.00 0.00 3.73
3211 3920 6.769341 TGGCTAGTCTGTCAGTAATTATCGTA 59.231 38.462 0.00 0.00 0.00 3.43
3212 3921 7.076983 GGCTAGTCTGTCAGTAATTATCGTAC 58.923 42.308 0.00 0.00 0.00 3.67
3213 3922 7.255035 GGCTAGTCTGTCAGTAATTATCGTACA 60.255 40.741 0.00 0.00 0.00 2.90
3214 3923 8.291032 GCTAGTCTGTCAGTAATTATCGTACAT 58.709 37.037 0.00 0.00 0.00 2.29
3218 3927 8.903723 GTCTGTCAGTAATTATCGTACATAAGC 58.096 37.037 0.00 0.00 0.00 3.09
3219 3928 8.847196 TCTGTCAGTAATTATCGTACATAAGCT 58.153 33.333 0.00 0.00 0.00 3.74
3220 3929 9.464714 CTGTCAGTAATTATCGTACATAAGCTT 57.535 33.333 3.48 3.48 0.00 3.74
3221 3930 9.244799 TGTCAGTAATTATCGTACATAAGCTTG 57.755 33.333 9.86 0.00 0.00 4.01
3222 3931 9.459640 GTCAGTAATTATCGTACATAAGCTTGA 57.540 33.333 9.86 0.00 0.00 3.02
3225 3934 9.982651 AGTAATTATCGTACATAAGCTTGATGT 57.017 29.630 9.86 15.94 40.59 3.06
3227 3936 6.525121 TTATCGTACATAAGCTTGATGTGC 57.475 37.500 21.70 19.95 38.03 4.57
3228 3937 3.194861 TCGTACATAAGCTTGATGTGCC 58.805 45.455 21.70 14.79 38.03 5.01
3229 3938 2.935849 CGTACATAAGCTTGATGTGCCA 59.064 45.455 21.70 8.05 38.03 4.92
3230 3939 3.001634 CGTACATAAGCTTGATGTGCCAG 59.998 47.826 21.70 11.37 38.03 4.85
3231 3940 3.077484 ACATAAGCTTGATGTGCCAGT 57.923 42.857 9.86 0.00 36.18 4.00
3232 3941 3.424703 ACATAAGCTTGATGTGCCAGTT 58.575 40.909 9.86 0.00 36.18 3.16
3233 3942 3.828451 ACATAAGCTTGATGTGCCAGTTT 59.172 39.130 9.86 0.00 36.18 2.66
3234 3943 4.082571 ACATAAGCTTGATGTGCCAGTTTC 60.083 41.667 9.86 0.00 36.18 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
1 2 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
2 3 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
3 4 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
4 5 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
5 6 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
6 7 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
7 8 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
8 9 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
9 10 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
10 11 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
11 12 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
12 13 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
13 14 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
14 15 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
15 16 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
16 17 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
17 18 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
18 19 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
19 20 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
20 21 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
21 22 1.358725 CGTGTGCGTTCATAGGGGTG 61.359 60.000 0.00 0.00 0.00 4.61
22 23 1.079405 CGTGTGCGTTCATAGGGGT 60.079 57.895 0.00 0.00 0.00 4.95
23 24 2.461110 GCGTGTGCGTTCATAGGGG 61.461 63.158 0.00 0.00 40.81 4.79
24 25 3.089784 GCGTGTGCGTTCATAGGG 58.910 61.111 0.00 0.00 40.81 3.53
35 36 4.605967 GTTGGGTGTGCGCGTGTG 62.606 66.667 8.43 0.00 0.00 3.82
41 42 4.676951 ATGGGGGTTGGGTGTGCG 62.677 66.667 0.00 0.00 0.00 5.34
42 43 2.996734 CATGGGGGTTGGGTGTGC 60.997 66.667 0.00 0.00 0.00 4.57
43 44 1.304381 CTCATGGGGGTTGGGTGTG 60.304 63.158 0.00 0.00 0.00 3.82
44 45 3.180282 CTCATGGGGGTTGGGTGT 58.820 61.111 0.00 0.00 0.00 4.16
45 46 2.362889 GCTCATGGGGGTTGGGTG 60.363 66.667 0.00 0.00 0.00 4.61
46 47 2.228841 GATGCTCATGGGGGTTGGGT 62.229 60.000 0.00 0.00 0.00 4.51
47 48 1.456331 GATGCTCATGGGGGTTGGG 60.456 63.158 0.00 0.00 0.00 4.12
48 49 0.466922 GAGATGCTCATGGGGGTTGG 60.467 60.000 0.00 0.00 0.00 3.77
49 50 0.466922 GGAGATGCTCATGGGGGTTG 60.467 60.000 0.00 0.00 31.08 3.77
50 51 0.920763 TGGAGATGCTCATGGGGGTT 60.921 55.000 0.00 0.00 31.08 4.11
51 52 0.920763 TTGGAGATGCTCATGGGGGT 60.921 55.000 0.00 0.00 31.08 4.95
52 53 0.178998 CTTGGAGATGCTCATGGGGG 60.179 60.000 0.00 0.00 31.08 5.40
53 54 0.841961 TCTTGGAGATGCTCATGGGG 59.158 55.000 0.00 0.00 31.08 4.96
54 55 1.767088 TCTCTTGGAGATGCTCATGGG 59.233 52.381 0.00 0.00 33.35 4.00
55 56 2.435069 AGTCTCTTGGAGATGCTCATGG 59.565 50.000 0.47 0.00 40.98 3.66
56 57 3.132467 TCAGTCTCTTGGAGATGCTCATG 59.868 47.826 0.47 0.00 40.98 3.07
57 58 3.372897 TCAGTCTCTTGGAGATGCTCAT 58.627 45.455 0.47 0.00 40.98 2.90
58 59 2.759535 CTCAGTCTCTTGGAGATGCTCA 59.240 50.000 0.47 0.00 40.98 4.26
59 60 2.481795 GCTCAGTCTCTTGGAGATGCTC 60.482 54.545 0.47 0.00 40.98 4.26
60 61 1.481772 GCTCAGTCTCTTGGAGATGCT 59.518 52.381 0.47 0.00 40.98 3.79
61 62 1.473080 GGCTCAGTCTCTTGGAGATGC 60.473 57.143 0.47 4.16 40.98 3.91
62 63 1.202394 CGGCTCAGTCTCTTGGAGATG 60.202 57.143 0.47 1.86 40.98 2.90
63 64 1.110442 CGGCTCAGTCTCTTGGAGAT 58.890 55.000 0.47 0.00 40.98 2.75
64 65 0.967887 CCGGCTCAGTCTCTTGGAGA 60.968 60.000 0.00 0.00 36.22 3.71
65 66 1.515020 CCGGCTCAGTCTCTTGGAG 59.485 63.158 0.00 0.00 0.00 3.86
66 67 2.650116 GCCGGCTCAGTCTCTTGGA 61.650 63.158 22.15 0.00 0.00 3.53
67 68 2.125350 GCCGGCTCAGTCTCTTGG 60.125 66.667 22.15 0.00 0.00 3.61
68 69 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
69 70 1.342819 GATATGCCGGCTCAGTCTCTT 59.657 52.381 29.70 1.60 0.00 2.85
70 71 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
71 72 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
72 73 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
73 74 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
74 75 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
75 76 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
76 77 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
77 78 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
78 79 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
79 80 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
80 81 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
81 82 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
82 83 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
83 84 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
84 85 7.411264 CGGCTTCGTAAATCTCAAGATGATATG 60.411 40.741 0.00 0.00 34.49 1.78
85 86 6.587990 CGGCTTCGTAAATCTCAAGATGATAT 59.412 38.462 0.00 0.00 34.49 1.63
86 87 5.920840 CGGCTTCGTAAATCTCAAGATGATA 59.079 40.000 0.00 0.00 34.49 2.15
87 88 4.747108 CGGCTTCGTAAATCTCAAGATGAT 59.253 41.667 0.00 0.00 34.49 2.45
88 89 4.112634 CGGCTTCGTAAATCTCAAGATGA 58.887 43.478 0.00 0.00 34.49 2.92
89 90 3.302740 GCGGCTTCGTAAATCTCAAGATG 60.303 47.826 0.00 0.00 33.84 2.90
90 91 2.866762 GCGGCTTCGTAAATCTCAAGAT 59.133 45.455 0.00 0.00 34.53 2.40
91 92 2.094182 AGCGGCTTCGTAAATCTCAAGA 60.094 45.455 0.00 0.00 36.07 3.02
92 93 2.029728 CAGCGGCTTCGTAAATCTCAAG 59.970 50.000 0.00 0.00 36.07 3.02
93 94 1.999735 CAGCGGCTTCGTAAATCTCAA 59.000 47.619 0.00 0.00 36.07 3.02
94 95 1.067142 ACAGCGGCTTCGTAAATCTCA 60.067 47.619 0.00 0.00 36.07 3.27
95 96 1.588861 GACAGCGGCTTCGTAAATCTC 59.411 52.381 0.00 0.00 36.07 2.75
96 97 1.641577 GACAGCGGCTTCGTAAATCT 58.358 50.000 0.00 0.00 36.07 2.40
97 98 0.651031 GGACAGCGGCTTCGTAAATC 59.349 55.000 0.00 0.00 36.07 2.17
98 99 0.036765 TGGACAGCGGCTTCGTAAAT 60.037 50.000 0.00 0.00 36.07 1.40
99 100 0.947180 GTGGACAGCGGCTTCGTAAA 60.947 55.000 0.00 0.00 36.07 2.01
100 101 1.373748 GTGGACAGCGGCTTCGTAA 60.374 57.895 0.00 0.00 36.07 3.18
101 102 2.260434 GTGGACAGCGGCTTCGTA 59.740 61.111 0.00 0.00 36.07 3.43
102 103 4.681978 GGTGGACAGCGGCTTCGT 62.682 66.667 0.00 0.00 36.07 3.85
103 104 2.501223 TTAGGTGGACAGCGGCTTCG 62.501 60.000 0.00 0.00 0.00 3.79
104 105 1.019805 GTTAGGTGGACAGCGGCTTC 61.020 60.000 0.00 1.58 0.00 3.86
105 106 1.003718 GTTAGGTGGACAGCGGCTT 60.004 57.895 0.00 0.00 0.00 4.35
106 107 2.663196 GTTAGGTGGACAGCGGCT 59.337 61.111 0.00 0.00 0.00 5.52
107 108 2.436115 GGTTAGGTGGACAGCGGC 60.436 66.667 0.00 0.00 0.00 6.53
108 109 0.462047 GATGGTTAGGTGGACAGCGG 60.462 60.000 0.00 0.00 0.00 5.52
109 110 0.537188 AGATGGTTAGGTGGACAGCG 59.463 55.000 0.00 0.00 0.00 5.18
110 111 1.555075 TGAGATGGTTAGGTGGACAGC 59.445 52.381 0.00 0.00 0.00 4.40
111 112 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
112 113 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
113 114 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
114 115 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
115 116 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
116 117 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
117 118 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
118 119 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
119 120 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
133 134 1.403679 TCTTTTGCGAACCAACCTGTG 59.596 47.619 0.00 0.00 31.97 3.66
134 135 1.757682 TCTTTTGCGAACCAACCTGT 58.242 45.000 0.00 0.00 31.97 4.00
135 136 2.357637 TCTTCTTTTGCGAACCAACCTG 59.642 45.455 0.00 0.00 31.97 4.00
136 137 2.357952 GTCTTCTTTTGCGAACCAACCT 59.642 45.455 0.00 0.00 31.97 3.50
137 138 2.543031 GGTCTTCTTTTGCGAACCAACC 60.543 50.000 0.00 0.00 31.97 3.77
138 139 2.098443 TGGTCTTCTTTTGCGAACCAAC 59.902 45.455 0.00 0.00 31.97 3.77
139 140 2.370349 TGGTCTTCTTTTGCGAACCAA 58.630 42.857 0.00 0.00 0.00 3.67
140 141 2.045561 TGGTCTTCTTTTGCGAACCA 57.954 45.000 0.00 0.00 0.00 3.67
141 142 2.357952 AGTTGGTCTTCTTTTGCGAACC 59.642 45.455 0.00 0.00 0.00 3.62
142 143 3.692791 AGTTGGTCTTCTTTTGCGAAC 57.307 42.857 0.00 0.00 0.00 3.95
143 144 3.692101 TCAAGTTGGTCTTCTTTTGCGAA 59.308 39.130 2.34 0.00 33.63 4.70
144 145 3.064820 GTCAAGTTGGTCTTCTTTTGCGA 59.935 43.478 2.34 0.00 33.63 5.10
145 146 3.181501 TGTCAAGTTGGTCTTCTTTTGCG 60.182 43.478 2.34 0.00 33.63 4.85
146 147 4.354587 CTGTCAAGTTGGTCTTCTTTTGC 58.645 43.478 2.34 0.00 33.63 3.68
147 148 4.399303 ACCTGTCAAGTTGGTCTTCTTTTG 59.601 41.667 2.34 0.00 33.63 2.44
148 149 4.600062 ACCTGTCAAGTTGGTCTTCTTTT 58.400 39.130 2.34 0.00 33.63 2.27
149 150 4.236527 ACCTGTCAAGTTGGTCTTCTTT 57.763 40.909 2.34 0.00 33.63 2.52
150 151 3.933861 ACCTGTCAAGTTGGTCTTCTT 57.066 42.857 2.34 0.00 33.63 2.52
151 152 3.933861 AACCTGTCAAGTTGGTCTTCT 57.066 42.857 2.34 0.00 33.63 2.85
152 153 5.505819 GCTTAAACCTGTCAAGTTGGTCTTC 60.506 44.000 2.34 0.00 33.63 2.87
153 154 4.338400 GCTTAAACCTGTCAAGTTGGTCTT 59.662 41.667 2.34 0.00 36.75 3.01
154 155 3.883489 GCTTAAACCTGTCAAGTTGGTCT 59.117 43.478 2.34 0.00 32.98 3.85
155 156 3.883489 AGCTTAAACCTGTCAAGTTGGTC 59.117 43.478 2.34 0.00 32.98 4.02
156 157 3.898482 AGCTTAAACCTGTCAAGTTGGT 58.102 40.909 2.34 0.00 35.29 3.67
157 158 4.084013 CGTAGCTTAAACCTGTCAAGTTGG 60.084 45.833 2.34 0.00 0.00 3.77
158 159 4.084013 CCGTAGCTTAAACCTGTCAAGTTG 60.084 45.833 0.00 0.00 0.00 3.16
159 160 4.062991 CCGTAGCTTAAACCTGTCAAGTT 58.937 43.478 0.00 0.00 0.00 2.66
160 161 3.322828 TCCGTAGCTTAAACCTGTCAAGT 59.677 43.478 0.00 0.00 0.00 3.16
161 162 3.921677 TCCGTAGCTTAAACCTGTCAAG 58.078 45.455 0.00 0.00 0.00 3.02
162 163 3.575256 TCTCCGTAGCTTAAACCTGTCAA 59.425 43.478 0.00 0.00 0.00 3.18
163 164 3.159472 TCTCCGTAGCTTAAACCTGTCA 58.841 45.455 0.00 0.00 0.00 3.58
164 165 3.863142 TCTCCGTAGCTTAAACCTGTC 57.137 47.619 0.00 0.00 0.00 3.51
165 166 4.040095 AGTTTCTCCGTAGCTTAAACCTGT 59.960 41.667 0.00 0.00 31.87 4.00
166 167 4.566987 AGTTTCTCCGTAGCTTAAACCTG 58.433 43.478 0.00 0.00 31.87 4.00
167 168 4.886496 AGTTTCTCCGTAGCTTAAACCT 57.114 40.909 0.00 0.00 31.87 3.50
168 169 5.928264 TGTAAGTTTCTCCGTAGCTTAAACC 59.072 40.000 0.00 0.00 31.87 3.27
169 170 7.117379 ACATGTAAGTTTCTCCGTAGCTTAAAC 59.883 37.037 0.00 0.00 0.00 2.01
170 171 7.117236 CACATGTAAGTTTCTCCGTAGCTTAAA 59.883 37.037 0.00 0.00 0.00 1.52
171 172 6.588756 CACATGTAAGTTTCTCCGTAGCTTAA 59.411 38.462 0.00 0.00 0.00 1.85
172 173 6.097356 CACATGTAAGTTTCTCCGTAGCTTA 58.903 40.000 0.00 0.00 0.00 3.09
173 174 4.929808 CACATGTAAGTTTCTCCGTAGCTT 59.070 41.667 0.00 0.00 0.00 3.74
174 175 4.495422 CACATGTAAGTTTCTCCGTAGCT 58.505 43.478 0.00 0.00 0.00 3.32
175 176 3.617263 CCACATGTAAGTTTCTCCGTAGC 59.383 47.826 0.00 0.00 0.00 3.58
176 177 4.181578 CCCACATGTAAGTTTCTCCGTAG 58.818 47.826 0.00 0.00 0.00 3.51
177 178 3.055675 CCCCACATGTAAGTTTCTCCGTA 60.056 47.826 0.00 0.00 0.00 4.02
178 179 2.290071 CCCCACATGTAAGTTTCTCCGT 60.290 50.000 0.00 0.00 0.00 4.69
179 180 2.356135 CCCCACATGTAAGTTTCTCCG 58.644 52.381 0.00 0.00 0.00 4.63
180 181 2.092323 GCCCCACATGTAAGTTTCTCC 58.908 52.381 0.00 0.00 0.00 3.71
181 182 2.092323 GGCCCCACATGTAAGTTTCTC 58.908 52.381 0.00 0.00 0.00 2.87
182 183 1.613255 CGGCCCCACATGTAAGTTTCT 60.613 52.381 0.00 0.00 0.00 2.52
183 184 0.808755 CGGCCCCACATGTAAGTTTC 59.191 55.000 0.00 0.00 0.00 2.78
184 185 0.610785 CCGGCCCCACATGTAAGTTT 60.611 55.000 0.00 0.00 0.00 2.66
185 186 1.001393 CCGGCCCCACATGTAAGTT 60.001 57.895 0.00 0.00 0.00 2.66
186 187 1.910580 CTCCGGCCCCACATGTAAGT 61.911 60.000 0.00 0.00 0.00 2.24
187 188 1.153168 CTCCGGCCCCACATGTAAG 60.153 63.158 0.00 0.00 0.00 2.34
188 189 2.675242 CCTCCGGCCCCACATGTAA 61.675 63.158 0.00 0.00 0.00 2.41
189 190 3.087253 CCTCCGGCCCCACATGTA 61.087 66.667 0.00 0.00 0.00 2.29
204 205 0.037590 TGTGTAAATTGAGGCGCCCT 59.962 50.000 26.15 10.99 36.03 5.19
205 206 0.451783 CTGTGTAAATTGAGGCGCCC 59.548 55.000 26.15 15.80 0.00 6.13
206 207 0.451783 CCTGTGTAAATTGAGGCGCC 59.548 55.000 21.89 21.89 0.00 6.53
207 208 0.179163 GCCTGTGTAAATTGAGGCGC 60.179 55.000 0.00 0.00 41.61 6.53
208 209 3.996825 GCCTGTGTAAATTGAGGCG 57.003 52.632 0.00 0.00 41.61 5.52
210 211 1.468520 CACGGCCTGTGTAAATTGAGG 59.531 52.381 16.51 0.00 43.88 3.86
211 212 2.900122 CACGGCCTGTGTAAATTGAG 57.100 50.000 16.51 0.00 43.88 3.02
269 270 4.715523 ACCATCCACAACCCGCGG 62.716 66.667 21.04 21.04 0.00 6.46
270 271 3.430862 CACCATCCACAACCCGCG 61.431 66.667 0.00 0.00 0.00 6.46
271 272 3.061848 CCACCATCCACAACCCGC 61.062 66.667 0.00 0.00 0.00 6.13
272 273 1.377202 CTCCACCATCCACAACCCG 60.377 63.158 0.00 0.00 0.00 5.28
273 274 1.678970 GCTCCACCATCCACAACCC 60.679 63.158 0.00 0.00 0.00 4.11
274 275 1.678970 GGCTCCACCATCCACAACC 60.679 63.158 0.00 0.00 38.86 3.77
275 276 2.040544 CGGCTCCACCATCCACAAC 61.041 63.158 0.00 0.00 39.03 3.32
276 277 2.350895 CGGCTCCACCATCCACAA 59.649 61.111 0.00 0.00 39.03 3.33
277 278 2.927856 ACGGCTCCACCATCCACA 60.928 61.111 0.00 0.00 39.03 4.17
278 279 2.436646 CACGGCTCCACCATCCAC 60.437 66.667 0.00 0.00 39.03 4.02
279 280 4.408821 GCACGGCTCCACCATCCA 62.409 66.667 0.00 0.00 39.03 3.41
280 281 4.101448 AGCACGGCTCCACCATCC 62.101 66.667 0.00 0.00 39.03 3.51
372 378 2.998949 CTGAACCAGGGGTAGGCC 59.001 66.667 0.00 0.00 33.12 5.19
462 487 1.069090 GACGTCACTGGGCACTGAA 59.931 57.895 11.55 0.00 0.00 3.02
465 490 2.524394 AGGACGTCACTGGGCACT 60.524 61.111 18.91 0.00 0.00 4.40
467 492 3.311110 GGAGGACGTCACTGGGCA 61.311 66.667 18.91 0.00 0.00 5.36
468 493 2.997897 AGGAGGACGTCACTGGGC 60.998 66.667 18.91 0.00 0.00 5.36
488 513 2.897350 GCGGATTTGGGCGGAGAG 60.897 66.667 0.00 0.00 0.00 3.20
489 514 3.711814 TGCGGATTTGGGCGGAGA 61.712 61.111 0.00 0.00 0.00 3.71
573 644 4.681978 ACCTGCGAGTTGGCCGAC 62.682 66.667 16.08 16.08 0.00 4.79
621 693 3.544834 CGAGTATTTGATCAAAGCAGCGG 60.545 47.826 24.17 9.55 33.32 5.52
622 694 3.306973 TCGAGTATTTGATCAAAGCAGCG 59.693 43.478 24.17 22.14 33.32 5.18
623 695 4.864916 TCGAGTATTTGATCAAAGCAGC 57.135 40.909 24.17 14.15 33.32 5.25
663 747 2.437343 CGAGAGAGCGAACGCAACC 61.437 63.158 20.66 9.51 44.88 3.77
677 768 6.192234 GGATACCGAAATAATCTAGCGAGA 57.808 41.667 0.00 0.00 35.71 4.04
726 818 2.048222 CACAGACACGACCCGCAT 60.048 61.111 0.00 0.00 0.00 4.73
727 819 4.961511 GCACAGACACGACCCGCA 62.962 66.667 0.00 0.00 0.00 5.69
731 824 2.430921 CGGAGCACAGACACGACC 60.431 66.667 0.00 0.00 0.00 4.79
733 826 0.960861 ATCTCGGAGCACAGACACGA 60.961 55.000 0.00 0.00 0.00 4.35
734 827 0.524392 GATCTCGGAGCACAGACACG 60.524 60.000 0.00 0.00 0.00 4.49
740 833 1.136774 CGAACGATCTCGGAGCACA 59.863 57.895 0.00 0.00 44.95 4.57
748 841 1.136029 AGACACGACACGAACGATCTC 60.136 52.381 0.14 0.00 34.70 2.75
749 842 0.873054 AGACACGACACGAACGATCT 59.127 50.000 0.14 0.00 34.70 2.75
750 843 1.136029 AGAGACACGACACGAACGATC 60.136 52.381 0.14 0.00 34.70 3.69
751 844 0.873054 AGAGACACGACACGAACGAT 59.127 50.000 0.14 0.00 34.70 3.73
752 845 0.041576 CAGAGACACGACACGAACGA 60.042 55.000 0.14 0.00 34.70 3.85
755 848 1.535226 CCAACAGAGACACGACACGAA 60.535 52.381 0.00 0.00 0.00 3.85
759 853 2.578786 TCTACCAACAGAGACACGACA 58.421 47.619 0.00 0.00 0.00 4.35
761 855 3.824443 TCAATCTACCAACAGAGACACGA 59.176 43.478 0.00 0.00 0.00 4.35
777 871 6.202762 GGCGAACAAAAAGGAAAAATCAATCT 59.797 34.615 0.00 0.00 0.00 2.40
782 876 3.362596 GCGGCGAACAAAAAGGAAAAATC 60.363 43.478 12.98 0.00 0.00 2.17
783 877 2.542178 GCGGCGAACAAAAAGGAAAAAT 59.458 40.909 12.98 0.00 0.00 1.82
806 903 0.248743 AAGTTCGTCGACAGCAACGA 60.249 50.000 17.16 3.24 45.37 3.85
868 1042 2.139917 CACCCGTCGTTTCAGAAATCA 58.860 47.619 0.00 0.00 0.00 2.57
903 1154 7.017645 CGAAAATCCCATCAATAAATCGCTAG 58.982 38.462 0.00 0.00 0.00 3.42
916 1172 7.170998 ACAAGTATATTCGACGAAAATCCCATC 59.829 37.037 15.22 0.97 0.00 3.51
1618 2174 2.592574 CCGCGTCATGGGCATCAT 60.593 61.111 4.92 0.00 36.31 2.45
1713 2269 3.093278 CGATGCTTGCCGTTCCTC 58.907 61.111 0.00 0.00 0.00 3.71
2096 2673 3.488569 GGGTGGCGGATGATGGGA 61.489 66.667 0.00 0.00 0.00 4.37
2195 2772 2.836360 TAGTCGGCGGGGGTGATC 60.836 66.667 7.21 0.00 0.00 2.92
2339 2939 1.892209 ACGTCTCCCATTTTGGTGTC 58.108 50.000 0.00 0.00 35.17 3.67
2371 2971 6.927416 TGCTTCTGTGCATCTAAATCAAAAT 58.073 32.000 0.00 0.00 38.12 1.82
2375 2975 5.617529 CGTTTGCTTCTGTGCATCTAAATCA 60.618 40.000 0.00 0.00 42.96 2.57
2406 3006 4.180057 GCATGTCCTAACTCTCTTGACTG 58.820 47.826 0.00 0.00 0.00 3.51
2474 3084 3.075582 CCAGAATCCCAGATCAATCCCAT 59.924 47.826 0.00 0.00 0.00 4.00
2534 3145 5.287674 ACAGATCTGATGACCATGTAAGG 57.712 43.478 29.27 0.00 0.00 2.69
2547 3158 8.467598 GGTGTACTCAAATACTAACAGATCTGA 58.532 37.037 29.27 6.62 0.00 3.27
2548 3159 8.251026 TGGTGTACTCAAATACTAACAGATCTG 58.749 37.037 21.37 21.37 0.00 2.90
2549 3160 8.362464 TGGTGTACTCAAATACTAACAGATCT 57.638 34.615 0.00 0.00 0.00 2.75
2550 3161 9.601217 AATGGTGTACTCAAATACTAACAGATC 57.399 33.333 0.00 0.00 0.00 2.75
2647 3341 6.655003 GGAGTAACTCATTTCTCCAATTGTCA 59.345 38.462 4.43 0.00 46.58 3.58
2698 3392 7.553334 GGCAAATCATATCATTGGCATCTATT 58.447 34.615 0.77 0.00 45.70 1.73
2740 3434 2.742428 ATCCCAGATCAACCCATGTG 57.258 50.000 0.00 0.00 0.00 3.21
2768 3465 7.119262 CCCAACATATAAATTCACCTATCCGAC 59.881 40.741 0.00 0.00 0.00 4.79
2817 3515 9.550406 GTGTAACTGTAACCAATGGCTATATAA 57.450 33.333 0.00 0.00 0.00 0.98
2844 3543 5.767816 AAACGCATCTAAGGAACAAGTTT 57.232 34.783 0.00 0.00 0.00 2.66
2859 3558 6.238484 GCTGATAATTACCTCTCAAAACGCAT 60.238 38.462 0.00 0.00 0.00 4.73
2874 3573 6.675026 AGTTACATCGCTACGCTGATAATTA 58.325 36.000 0.00 0.00 0.00 1.40
2910 3609 6.071952 ACAGTACCAAAATCACACCAATGATC 60.072 38.462 0.00 0.00 38.40 2.92
2949 3648 4.530161 ACTGAAGTCTGAAGTAGCCTGAAT 59.470 41.667 0.00 0.00 0.00 2.57
2973 3679 4.158394 CCAACTGTCCAGGGAAACAATATG 59.842 45.833 0.00 0.00 0.00 1.78
2974 3680 4.044065 TCCAACTGTCCAGGGAAACAATAT 59.956 41.667 0.00 0.00 0.00 1.28
2983 3689 2.040278 TCATTTCTCCAACTGTCCAGGG 59.960 50.000 0.00 0.00 0.00 4.45
2984 3690 3.244700 ACTCATTTCTCCAACTGTCCAGG 60.245 47.826 0.00 0.00 0.00 4.45
2987 3693 5.552178 ACTAACTCATTTCTCCAACTGTCC 58.448 41.667 0.00 0.00 0.00 4.02
3022 3731 4.891260 CATCTATGCTTGACATGCTCCTA 58.109 43.478 13.81 3.66 40.06 2.94
3059 3768 3.873952 CAGAGCAACAGAAACTATAGGCC 59.126 47.826 4.43 0.00 0.00 5.19
3102 3811 3.775202 CAGTTAGGACTCGGAACATCAG 58.225 50.000 0.00 0.00 32.54 2.90
3112 3821 3.944055 TTGAGACTGCAGTTAGGACTC 57.056 47.619 22.65 21.17 32.54 3.36
3113 3822 4.141711 TGTTTTGAGACTGCAGTTAGGACT 60.142 41.667 22.65 13.01 36.25 3.85
3114 3823 4.127171 TGTTTTGAGACTGCAGTTAGGAC 58.873 43.478 22.65 14.88 0.00 3.85
3134 3843 9.974980 TCATTATGTACGACATGTTATGTATGT 57.025 29.630 0.00 0.00 45.03 2.29
3137 3846 9.251792 GGTTCATTATGTACGACATGTTATGTA 57.748 33.333 0.00 0.98 45.03 2.29
3139 3848 7.042992 ACGGTTCATTATGTACGACATGTTATG 60.043 37.037 0.00 0.00 39.53 1.90
3140 3849 6.982141 ACGGTTCATTATGTACGACATGTTAT 59.018 34.615 0.00 0.00 39.53 1.89
3141 3850 6.253942 CACGGTTCATTATGTACGACATGTTA 59.746 38.462 0.00 0.00 39.53 2.41
3142 3851 5.062934 CACGGTTCATTATGTACGACATGTT 59.937 40.000 0.00 0.00 39.53 2.71
3143 3852 4.565166 CACGGTTCATTATGTACGACATGT 59.435 41.667 0.00 0.00 39.53 3.21
3144 3853 4.801516 TCACGGTTCATTATGTACGACATG 59.198 41.667 11.19 0.00 39.53 3.21
3145 3854 5.001237 TCACGGTTCATTATGTACGACAT 57.999 39.130 11.19 0.00 42.35 3.06
3146 3855 4.437772 TCACGGTTCATTATGTACGACA 57.562 40.909 11.19 0.00 0.00 4.35
3147 3856 5.961395 ATTCACGGTTCATTATGTACGAC 57.039 39.130 11.19 0.00 0.00 4.34
3148 3857 7.168469 CACATATTCACGGTTCATTATGTACGA 59.832 37.037 11.19 0.00 31.13 3.43
3149 3858 7.280769 CACATATTCACGGTTCATTATGTACG 58.719 38.462 0.00 0.00 31.13 3.67
3150 3859 7.042051 AGCACATATTCACGGTTCATTATGTAC 60.042 37.037 0.00 0.00 31.13 2.90
3151 3860 6.989759 AGCACATATTCACGGTTCATTATGTA 59.010 34.615 0.00 0.00 31.13 2.29
3152 3861 5.822519 AGCACATATTCACGGTTCATTATGT 59.177 36.000 0.00 0.00 32.13 2.29
3153 3862 6.018016 TCAGCACATATTCACGGTTCATTATG 60.018 38.462 0.00 0.00 0.00 1.90
3154 3863 6.054941 TCAGCACATATTCACGGTTCATTAT 58.945 36.000 0.00 0.00 0.00 1.28
3155 3864 5.423886 TCAGCACATATTCACGGTTCATTA 58.576 37.500 0.00 0.00 0.00 1.90
3156 3865 4.260985 TCAGCACATATTCACGGTTCATT 58.739 39.130 0.00 0.00 0.00 2.57
3157 3866 3.872696 TCAGCACATATTCACGGTTCAT 58.127 40.909 0.00 0.00 0.00 2.57
3158 3867 3.326836 TCAGCACATATTCACGGTTCA 57.673 42.857 0.00 0.00 0.00 3.18
3159 3868 3.871006 TGATCAGCACATATTCACGGTTC 59.129 43.478 0.00 0.00 0.00 3.62
3160 3869 3.872696 TGATCAGCACATATTCACGGTT 58.127 40.909 0.00 0.00 0.00 4.44
3161 3870 3.541996 TGATCAGCACATATTCACGGT 57.458 42.857 0.00 0.00 0.00 4.83
3162 3871 3.302675 CGTTGATCAGCACATATTCACGG 60.303 47.826 10.36 0.00 0.00 4.94
3163 3872 3.302675 CCGTTGATCAGCACATATTCACG 60.303 47.826 10.36 6.34 0.00 4.35
3164 3873 3.623060 ACCGTTGATCAGCACATATTCAC 59.377 43.478 10.36 0.00 0.00 3.18
3165 3874 3.622612 CACCGTTGATCAGCACATATTCA 59.377 43.478 10.36 0.00 0.00 2.57
3166 3875 3.002656 CCACCGTTGATCAGCACATATTC 59.997 47.826 10.36 0.00 0.00 1.75
3167 3876 2.945008 CCACCGTTGATCAGCACATATT 59.055 45.455 10.36 0.00 0.00 1.28
3168 3877 2.564771 CCACCGTTGATCAGCACATAT 58.435 47.619 10.36 0.00 0.00 1.78
3169 3878 2.011548 GCCACCGTTGATCAGCACATA 61.012 52.381 10.36 0.00 0.00 2.29
3170 3879 1.308069 GCCACCGTTGATCAGCACAT 61.308 55.000 10.36 0.00 0.00 3.21
3171 3880 1.965930 GCCACCGTTGATCAGCACA 60.966 57.895 10.36 0.00 0.00 4.57
3172 3881 0.391130 TAGCCACCGTTGATCAGCAC 60.391 55.000 10.36 0.00 0.00 4.40
3173 3882 0.108186 CTAGCCACCGTTGATCAGCA 60.108 55.000 10.36 0.00 0.00 4.41
3174 3883 0.108138 ACTAGCCACCGTTGATCAGC 60.108 55.000 0.00 0.00 0.00 4.26
3175 3884 1.478510 AGACTAGCCACCGTTGATCAG 59.521 52.381 0.00 0.00 0.00 2.90
3176 3885 1.204704 CAGACTAGCCACCGTTGATCA 59.795 52.381 0.00 0.00 0.00 2.92
3177 3886 1.204941 ACAGACTAGCCACCGTTGATC 59.795 52.381 0.00 0.00 0.00 2.92
3178 3887 1.204941 GACAGACTAGCCACCGTTGAT 59.795 52.381 0.00 0.00 0.00 2.57
3179 3888 0.601558 GACAGACTAGCCACCGTTGA 59.398 55.000 0.00 0.00 0.00 3.18
3180 3889 0.317160 TGACAGACTAGCCACCGTTG 59.683 55.000 0.00 0.00 0.00 4.10
3181 3890 0.603569 CTGACAGACTAGCCACCGTT 59.396 55.000 0.00 0.00 0.00 4.44
3182 3891 0.539901 ACTGACAGACTAGCCACCGT 60.540 55.000 10.08 0.00 0.00 4.83
3183 3892 1.460504 TACTGACAGACTAGCCACCG 58.539 55.000 10.08 0.00 0.00 4.94
3184 3893 4.473477 AATTACTGACAGACTAGCCACC 57.527 45.455 10.08 0.00 0.00 4.61
3185 3894 5.915758 CGATAATTACTGACAGACTAGCCAC 59.084 44.000 10.08 0.00 0.00 5.01
3186 3895 5.593095 ACGATAATTACTGACAGACTAGCCA 59.407 40.000 10.08 0.00 0.00 4.75
3187 3896 6.074544 ACGATAATTACTGACAGACTAGCC 57.925 41.667 10.08 0.00 0.00 3.93
3188 3897 7.637229 TGTACGATAATTACTGACAGACTAGC 58.363 38.462 10.08 0.00 0.00 3.42
3192 3901 8.903723 GCTTATGTACGATAATTACTGACAGAC 58.096 37.037 10.08 0.00 0.00 3.51
3193 3902 8.847196 AGCTTATGTACGATAATTACTGACAGA 58.153 33.333 10.08 0.00 0.00 3.41
3194 3903 9.464714 AAGCTTATGTACGATAATTACTGACAG 57.535 33.333 0.00 0.00 0.00 3.51
3195 3904 9.244799 CAAGCTTATGTACGATAATTACTGACA 57.755 33.333 0.00 0.00 0.00 3.58
3196 3905 9.459640 TCAAGCTTATGTACGATAATTACTGAC 57.540 33.333 0.00 0.00 0.00 3.51
3199 3908 9.982651 ACATCAAGCTTATGTACGATAATTACT 57.017 29.630 15.52 0.00 35.82 2.24
3201 3910 8.708742 GCACATCAAGCTTATGTACGATAATTA 58.291 33.333 16.23 0.00 35.82 1.40
3202 3911 7.307989 GGCACATCAAGCTTATGTACGATAATT 60.308 37.037 16.23 0.00 35.82 1.40
3203 3912 6.147821 GGCACATCAAGCTTATGTACGATAAT 59.852 38.462 16.23 0.00 35.82 1.28
3204 3913 5.465390 GGCACATCAAGCTTATGTACGATAA 59.535 40.000 16.23 0.00 35.82 1.75
3205 3914 4.988540 GGCACATCAAGCTTATGTACGATA 59.011 41.667 16.23 0.00 35.82 2.92
3206 3915 3.809832 GGCACATCAAGCTTATGTACGAT 59.190 43.478 16.23 5.39 35.82 3.73
3207 3916 3.194861 GGCACATCAAGCTTATGTACGA 58.805 45.455 16.23 3.47 35.82 3.43
3208 3917 2.935849 TGGCACATCAAGCTTATGTACG 59.064 45.455 16.23 9.75 35.82 3.67
3209 3918 3.941483 ACTGGCACATCAAGCTTATGTAC 59.059 43.478 16.23 12.63 38.20 2.90
3210 3919 4.220693 ACTGGCACATCAAGCTTATGTA 57.779 40.909 16.23 5.91 38.20 2.29
3211 3920 3.077484 ACTGGCACATCAAGCTTATGT 57.923 42.857 0.00 7.15 38.20 2.29
3212 3921 4.418392 GAAACTGGCACATCAAGCTTATG 58.582 43.478 0.00 6.51 38.20 1.90
3213 3922 4.708726 GAAACTGGCACATCAAGCTTAT 57.291 40.909 0.00 0.00 38.20 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.