Multiple sequence alignment - TraesCS1B01G443700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G443700 chr1B 100.000 8041 0 0 1 8041 664798886 664806926 0.000000e+00 14850.0
1 TraesCS1B01G443700 chr1B 88.525 244 22 6 6840 7078 232329953 232330195 2.840000e-74 291.0
2 TraesCS1B01G443700 chr1B 89.381 226 23 1 6853 7077 665424302 665424077 4.750000e-72 283.0
3 TraesCS1B01G443700 chr1A 91.821 3411 142 54 4212 7531 573330868 573334232 0.000000e+00 4626.0
4 TraesCS1B01G443700 chr1A 87.961 3771 223 101 12 3698 573326814 573330437 0.000000e+00 4235.0
5 TraesCS1B01G443700 chr1A 92.202 436 29 2 3725 4160 573330430 573330860 5.330000e-171 612.0
6 TraesCS1B01G443700 chr1A 94.479 326 16 1 7710 8033 573440223 573440548 1.200000e-137 501.0
7 TraesCS1B01G443700 chr1A 87.500 264 31 2 7775 8037 573443625 573443887 3.650000e-78 303.0
8 TraesCS1B01G443700 chr1A 90.741 162 15 0 7531 7692 573334739 573334900 4.890000e-52 217.0
9 TraesCS1B01G443700 chr1D 93.463 2876 120 32 4871 7692 477217121 477219982 0.000000e+00 4207.0
10 TraesCS1B01G443700 chr1D 93.135 2695 142 21 2205 4882 477214436 477217104 0.000000e+00 3912.0
11 TraesCS1B01G443700 chr1D 88.142 1695 104 43 100 1749 477212499 477214141 0.000000e+00 1927.0
12 TraesCS1B01G443700 chr1D 94.864 331 17 0 7710 8040 477239349 477239679 1.200000e-142 518.0
13 TraesCS1B01G443700 chr1D 94.688 320 14 1 1763 2082 477214122 477214438 2.020000e-135 494.0
14 TraesCS1B01G443700 chr1D 92.308 104 6 1 12 115 477212380 477212481 6.500000e-31 147.0
15 TraesCS1B01G443700 chr3B 87.332 671 50 9 1253 1918 169823466 169824106 0.000000e+00 736.0
16 TraesCS1B01G443700 chr3B 77.513 378 42 11 6951 7317 276880632 276880977 3.830000e-43 187.0
17 TraesCS1B01G443700 chr3B 76.471 323 34 10 7005 7317 276907303 276907593 3.910000e-28 137.0
18 TraesCS1B01G443700 chr3D 83.421 380 45 14 6951 7319 184661558 184661930 3.600000e-88 337.0
19 TraesCS1B01G443700 chr7D 90.749 227 20 1 6853 7078 41752140 41751914 1.310000e-77 302.0
20 TraesCS1B01G443700 chr7D 89.823 226 22 1 6853 7077 486202284 486202059 1.020000e-73 289.0
21 TraesCS1B01G443700 chr7D 83.612 299 31 8 1672 1969 511116721 511117002 1.720000e-66 265.0
22 TraesCS1B01G443700 chr3A 89.868 227 22 1 6853 7078 629106762 629106988 2.840000e-74 291.0
23 TraesCS1B01G443700 chr2D 89.868 227 22 1 6853 7078 645429756 645429982 2.840000e-74 291.0
24 TraesCS1B01G443700 chr7B 88.106 227 25 2 6853 7078 515592169 515592394 1.330000e-67 268.0
25 TraesCS1B01G443700 chr7B 79.319 382 45 19 1234 1604 687663834 687664192 3.750000e-58 237.0
26 TraesCS1B01G443700 chr4D 91.463 164 12 1 4259 4420 87574438 87574601 2.920000e-54 224.0
27 TraesCS1B01G443700 chr4D 88.596 114 11 2 1261 1373 144877974 144877862 3.910000e-28 137.0
28 TraesCS1B01G443700 chr4A 92.157 153 12 0 4268 4420 500148610 500148762 4.890000e-52 217.0
29 TraesCS1B01G443700 chr4A 81.690 71 11 2 2125 2193 692562759 692562829 3.130000e-04 58.4
30 TraesCS1B01G443700 chr6D 92.308 52 4 0 1333 1384 4693139 4693190 3.110000e-09 75.0
31 TraesCS1B01G443700 chr2A 93.333 45 1 2 2219 2263 766641995 766642037 1.870000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G443700 chr1B 664798886 664806926 8040 False 14850.0 14850 100.00000 1 8041 1 chr1B.!!$F2 8040
1 TraesCS1B01G443700 chr1A 573326814 573334900 8086 False 2422.5 4626 90.68125 12 7692 4 chr1A.!!$F1 7680
2 TraesCS1B01G443700 chr1A 573440223 573443887 3664 False 402.0 501 90.98950 7710 8037 2 chr1A.!!$F2 327
3 TraesCS1B01G443700 chr1D 477212380 477219982 7602 False 2137.4 4207 92.34720 12 7692 5 chr1D.!!$F2 7680
4 TraesCS1B01G443700 chr3B 169823466 169824106 640 False 736.0 736 87.33200 1253 1918 1 chr3B.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 484 0.031994 ATCCACAAGGCAACGCAAAC 59.968 50.000 0.00 0.00 46.39 2.93 F
588 634 0.034896 GACCCGACTTGACACCACAT 59.965 55.000 0.00 0.00 0.00 3.21 F
617 663 0.391263 GGGCCGACTAGTCAAACCAG 60.391 60.000 22.37 5.06 0.00 4.00 F
2180 2303 0.614979 ACACCCGTCCTCTGCATAGT 60.615 55.000 0.00 0.00 0.00 2.12 F
2600 2727 0.167908 TTTCACACGGCGCATCAATC 59.832 50.000 10.83 0.00 0.00 2.67 F
2603 2730 0.316442 CACACGGCGCATCAATCATC 60.316 55.000 10.83 0.00 0.00 2.92 F
3874 4043 0.400213 CCTGCTTGGACTGGGTGTAA 59.600 55.000 0.00 0.00 38.35 2.41 F
3892 4061 1.039856 AACTTTTTGCGTGCTCCCAT 58.960 45.000 0.00 0.00 0.00 4.00 F
4082 4252 1.135373 TGAAAGACGAGATCGACTGCC 60.135 52.381 9.58 4.76 42.84 4.85 F
4736 4914 1.198867 CCATCGCCGTTGTGAAATCAA 59.801 47.619 0.00 0.00 34.04 2.57 F
5199 5421 0.320697 AAGGTAACGAGTGCCTCCAC 59.679 55.000 0.00 0.00 46.39 4.02 F
5202 5424 0.389948 GTAACGAGTGCCTCCACCAG 60.390 60.000 0.00 0.00 43.09 4.00 F
5431 5658 0.744281 CTTCAAGTTTGCCGGTGGTT 59.256 50.000 1.90 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1531 0.034767 ACATGCATGTGGAGGTGAGG 60.035 55.000 30.92 0.83 40.03 3.86 R
2300 2427 0.035056 ACAGTTCACTAGCCATGGCC 60.035 55.000 33.14 15.76 43.17 5.36 R
2336 2463 0.534412 TAAGAGAGTGCAGGCTCAGC 59.466 55.000 15.78 0.00 37.94 4.26 R
3804 3973 0.106217 AGAACAAACCCACCACCCTG 60.106 55.000 0.00 0.00 0.00 4.45 R
4458 4636 0.834612 CGAGGCATGGGGGTTAGTTA 59.165 55.000 0.00 0.00 0.00 2.24 R
4459 4637 1.205460 ACGAGGCATGGGGGTTAGTT 61.205 55.000 0.00 0.00 0.00 2.24 R
4706 4884 0.314302 ACGGCGATGGTAGATAGTGC 59.686 55.000 16.62 0.00 0.00 4.40 R
5193 5415 0.321122 GTCTGCTTGACTGGTGGAGG 60.321 60.000 3.72 0.00 42.21 4.30 R
5194 5416 0.394192 TGTCTGCTTGACTGGTGGAG 59.606 55.000 10.73 0.00 45.54 3.86 R
5638 5866 1.002033 CAAGTCAGTTCAGCCACAAGC 60.002 52.381 0.00 0.00 44.25 4.01 R
6658 6916 1.571215 CCAACGTAAAGCCACGGGAC 61.571 60.000 7.84 0.00 46.12 4.46 R
6997 7270 4.777896 AGAGATGGGCTACACTTTTACTGA 59.222 41.667 0.00 0.00 0.00 3.41 R
7215 7518 1.742761 AGATGGTCGCCAAACATCTG 58.257 50.000 12.29 0.00 46.85 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 295 3.529634 TTTATGGCGTTTGAAGTGACG 57.470 42.857 0.00 0.00 41.89 4.35
266 302 1.843753 CGTTTGAAGTGACGCCAAAAC 59.156 47.619 6.92 2.75 32.44 2.43
287 324 6.581171 AACTGAGTTCATTCCTTGAATTCC 57.419 37.500 2.27 0.00 45.62 3.01
294 331 5.420725 TCATTCCTTGAATTCCTCGAGAA 57.579 39.130 15.71 6.89 37.74 2.87
307 344 5.995565 TCCTCGAGAAGTTTATTTCCTGA 57.004 39.130 15.71 0.00 0.00 3.86
314 351 9.893305 TCGAGAAGTTTATTTCCTGAAAATTTC 57.107 29.630 0.00 0.00 38.53 2.17
327 364 7.142680 TCCTGAAAATTTCCGTTAACACATTC 58.857 34.615 6.39 1.30 0.00 2.67
336 374 6.932901 TCCGTTAACACATTCTTTAGTACG 57.067 37.500 6.39 0.00 0.00 3.67
358 396 3.072211 TCTGCAAGAAAGAGTGATGCTG 58.928 45.455 0.00 0.00 42.31 4.41
384 426 7.470841 GCCAGGTTAAGAAAACAAACATAAGGA 60.471 37.037 0.00 0.00 0.00 3.36
440 482 0.821301 TGATCCACAAGGCAACGCAA 60.821 50.000 0.00 0.00 46.39 4.85
441 483 0.313672 GATCCACAAGGCAACGCAAA 59.686 50.000 0.00 0.00 46.39 3.68
442 484 0.031994 ATCCACAAGGCAACGCAAAC 59.968 50.000 0.00 0.00 46.39 2.93
530 572 4.041815 ACAAGAGGAAAAGTAAGAGGGGAC 59.958 45.833 0.00 0.00 0.00 4.46
571 617 2.388232 CCGTAGCAGCAAACCCGAC 61.388 63.158 0.00 0.00 0.00 4.79
579 625 2.613506 GCAAACCCGACCCGACTTG 61.614 63.158 0.00 0.00 0.00 3.16
588 634 0.034896 GACCCGACTTGACACCACAT 59.965 55.000 0.00 0.00 0.00 3.21
593 639 1.577328 GACTTGACACCACATGCCCG 61.577 60.000 0.00 0.00 0.00 6.13
612 658 3.766691 GCCGGGCCGACTAGTCAA 61.767 66.667 30.79 0.00 0.00 3.18
613 659 2.975536 CCGGGCCGACTAGTCAAA 59.024 61.111 30.79 0.00 0.00 2.69
615 661 1.447314 CGGGCCGACTAGTCAAACC 60.447 63.158 24.41 18.04 0.00 3.27
616 662 1.675219 GGGCCGACTAGTCAAACCA 59.325 57.895 22.37 0.00 0.00 3.67
617 663 0.391263 GGGCCGACTAGTCAAACCAG 60.391 60.000 22.37 5.06 0.00 4.00
625 671 1.204941 CTAGTCAAACCAGTCCTCCCG 59.795 57.143 0.00 0.00 0.00 5.14
647 693 2.005350 TCCTACTCTGACCCTACCCAA 58.995 52.381 0.00 0.00 0.00 4.12
649 695 2.500504 CCTACTCTGACCCTACCCAAAC 59.499 54.545 0.00 0.00 0.00 2.93
650 696 2.417719 ACTCTGACCCTACCCAAACT 57.582 50.000 0.00 0.00 0.00 2.66
680 726 4.266070 CGCAGGAGCCATGCATGC 62.266 66.667 21.69 11.82 44.05 4.06
699 745 1.386772 TCCACCCTCCAACCACCTT 60.387 57.895 0.00 0.00 0.00 3.50
707 753 2.132996 CCAACCACCTTGCCTTGCA 61.133 57.895 0.00 0.00 36.47 4.08
713 759 1.607467 ACCTTGCCTTGCATCCCAC 60.607 57.895 0.00 0.00 38.76 4.61
823 877 1.073768 GAGGACTCGCTTTCACTCGC 61.074 60.000 0.00 0.00 0.00 5.03
824 878 1.080434 GGACTCGCTTTCACTCGCT 60.080 57.895 0.00 0.00 0.00 4.93
825 879 1.073768 GGACTCGCTTTCACTCGCTC 61.074 60.000 0.00 0.00 0.00 5.03
826 880 1.399504 GACTCGCTTTCACTCGCTCG 61.400 60.000 0.00 0.00 0.00 5.03
908 962 2.041405 CCACCTCTCTCCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
909 963 2.641746 CCACCTCTCTCCCTCCCCT 61.642 68.421 0.00 0.00 0.00 4.79
948 1011 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
949 1012 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.00 0.00 3.69
950 1013 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1209 1272 0.965363 GGCCCCTCAATTTCGCTCAA 60.965 55.000 0.00 0.00 0.00 3.02
1232 1295 0.758734 TGGCCTCATGGGATTACTCG 59.241 55.000 3.32 0.00 37.23 4.18
1375 1438 2.290514 CCTGCTCCACATCCTCAAGAAA 60.291 50.000 0.00 0.00 0.00 2.52
1464 1531 4.621991 TGAGCCTCGCAATTCTAGTAATC 58.378 43.478 0.00 0.00 0.00 1.75
1575 1678 4.871933 TTCACTCTTCTGTGCTGTGATA 57.128 40.909 0.00 0.00 37.47 2.15
1583 1687 7.119846 ACTCTTCTGTGCTGTGATATTTTTACC 59.880 37.037 0.00 0.00 0.00 2.85
1725 1839 0.883370 CTGCTGCACTGCACTCTGAA 60.883 55.000 0.00 0.00 38.12 3.02
1728 1842 1.334779 GCTGCACTGCACTCTGAAAAG 60.335 52.381 0.00 0.00 33.79 2.27
1777 1891 1.464997 GTCAGCACCGAAGTTTCATCC 59.535 52.381 0.00 0.00 0.00 3.51
1988 2102 2.428530 CTGGACGATCATGGACTTCTCA 59.571 50.000 0.00 0.00 0.00 3.27
2089 2209 5.180680 GGTGTAAGGTTCACACAGTAATTCC 59.819 44.000 7.80 0.00 46.53 3.01
2101 2221 7.505585 TCACACAGTAATTCCTTCCTCATTTTT 59.494 33.333 0.00 0.00 0.00 1.94
2102 2222 7.809806 CACACAGTAATTCCTTCCTCATTTTTC 59.190 37.037 0.00 0.00 0.00 2.29
2107 2230 4.742438 TTCCTTCCTCATTTTTCGAACG 57.258 40.909 0.00 0.00 0.00 3.95
2110 2233 1.885560 TCCTCATTTTTCGAACGGCA 58.114 45.000 0.00 0.00 0.00 5.69
2140 2263 3.402628 ACTCAAAATGTAGCGTCCACT 57.597 42.857 0.00 0.00 0.00 4.00
2141 2264 3.067106 ACTCAAAATGTAGCGTCCACTG 58.933 45.455 0.00 0.00 0.00 3.66
2142 2265 2.416547 CTCAAAATGTAGCGTCCACTGG 59.583 50.000 0.00 0.00 0.00 4.00
2176 2299 3.680786 CGACACCCGTCCTCTGCA 61.681 66.667 0.00 0.00 39.11 4.41
2180 2303 0.614979 ACACCCGTCCTCTGCATAGT 60.615 55.000 0.00 0.00 0.00 2.12
2183 2306 2.032620 ACCCGTCCTCTGCATAGTTAG 58.967 52.381 0.00 0.00 0.00 2.34
2184 2307 1.341531 CCCGTCCTCTGCATAGTTAGG 59.658 57.143 0.00 0.00 0.00 2.69
2185 2308 2.307768 CCGTCCTCTGCATAGTTAGGA 58.692 52.381 0.00 0.00 35.77 2.94
2186 2309 2.894126 CCGTCCTCTGCATAGTTAGGAT 59.106 50.000 0.00 0.00 40.17 3.24
2187 2310 3.305676 CCGTCCTCTGCATAGTTAGGATG 60.306 52.174 11.56 11.56 42.43 3.51
2196 2319 2.691409 TAGTTAGGATGCACACTGCC 57.309 50.000 0.00 0.00 44.23 4.85
2197 2320 0.692476 AGTTAGGATGCACACTGCCA 59.308 50.000 0.00 0.00 44.23 4.92
2198 2321 1.073763 AGTTAGGATGCACACTGCCAA 59.926 47.619 0.00 0.00 44.23 4.52
2199 2322 2.094675 GTTAGGATGCACACTGCCAAT 58.905 47.619 0.00 0.00 44.23 3.16
2200 2323 3.054434 AGTTAGGATGCACACTGCCAATA 60.054 43.478 0.00 0.00 44.23 1.90
2201 2324 2.742428 AGGATGCACACTGCCAATAT 57.258 45.000 0.00 0.00 44.23 1.28
2213 2336 3.378112 ACTGCCAATATGAACATGTTCGG 59.622 43.478 28.55 23.71 42.28 4.30
2300 2427 5.914033 TCGTTCCTCATAAAATGTAGAGGG 58.086 41.667 7.41 0.00 46.02 4.30
2301 2428 5.057149 CGTTCCTCATAAAATGTAGAGGGG 58.943 45.833 7.41 0.00 46.02 4.79
2302 2429 4.706842 TCCTCATAAAATGTAGAGGGGC 57.293 45.455 7.41 0.00 46.02 5.80
2303 2430 3.394606 TCCTCATAAAATGTAGAGGGGCC 59.605 47.826 7.41 0.00 46.02 5.80
2304 2431 3.138283 CCTCATAAAATGTAGAGGGGCCA 59.862 47.826 4.39 0.00 43.07 5.36
2334 2461 1.147824 CTGTAGAGGGGCCATGCAG 59.852 63.158 4.39 6.09 0.00 4.41
2336 2463 2.773918 TAGAGGGGCCATGCAGGG 60.774 66.667 14.45 14.45 38.09 4.45
2376 2503 6.430925 TCTTAATTACTGCATGATGTATGGCC 59.569 38.462 0.00 0.00 37.26 5.36
2422 2549 1.153597 GCAAGGGCACAGTGTTTTGC 61.154 55.000 17.24 17.24 40.72 3.68
2572 2699 2.030628 ACAGGTAAAAATCAAACCCGCG 60.031 45.455 0.00 0.00 33.53 6.46
2597 2724 1.443802 TATTTTCACACGGCGCATCA 58.556 45.000 10.83 0.00 0.00 3.07
2598 2725 0.595588 ATTTTCACACGGCGCATCAA 59.404 45.000 10.83 0.00 0.00 2.57
2599 2726 0.595588 TTTTCACACGGCGCATCAAT 59.404 45.000 10.83 0.00 0.00 2.57
2600 2727 0.167908 TTTCACACGGCGCATCAATC 59.832 50.000 10.83 0.00 0.00 2.67
2602 2729 0.744057 TCACACGGCGCATCAATCAT 60.744 50.000 10.83 0.00 0.00 2.45
2603 2730 0.316442 CACACGGCGCATCAATCATC 60.316 55.000 10.83 0.00 0.00 2.92
2604 2731 0.744057 ACACGGCGCATCAATCATCA 60.744 50.000 10.83 0.00 0.00 3.07
2606 2733 1.093972 ACGGCGCATCAATCATCAAA 58.906 45.000 10.83 0.00 0.00 2.69
2607 2734 1.677576 ACGGCGCATCAATCATCAAAT 59.322 42.857 10.83 0.00 0.00 2.32
2717 2844 7.938140 TCCAATAAATTACCTCAACCAAGAG 57.062 36.000 0.00 0.00 35.39 2.85
2780 2907 5.535753 ACAAATCACCTTTCCCTTTCTTG 57.464 39.130 0.00 0.00 0.00 3.02
2798 2925 4.232091 TCTTGTCTTGGTTCTTACCCTCT 58.768 43.478 0.00 0.00 44.35 3.69
2959 3086 5.357032 AGTTTTGACCTCTGGTAACACAAAG 59.643 40.000 0.00 0.00 46.17 2.77
2977 3104 6.712547 ACACAAAGCTTATCCATCCTATTAGC 59.287 38.462 0.00 0.00 30.91 3.09
3013 3140 7.834068 ATCCCGTAGATAAATTGATTGATCG 57.166 36.000 0.00 0.00 31.60 3.69
3014 3141 6.755206 TCCCGTAGATAAATTGATTGATCGT 58.245 36.000 0.00 0.00 0.00 3.73
3015 3142 7.888424 TCCCGTAGATAAATTGATTGATCGTA 58.112 34.615 0.00 0.00 0.00 3.43
3100 3231 0.683504 TCTAGGAGACAACGAGGGGC 60.684 60.000 0.00 0.00 0.00 5.80
3187 3318 3.119388 ACAGTGGGAAATGATTGATTGCG 60.119 43.478 0.00 0.00 0.00 4.85
3224 3355 4.202111 GCACACATGTAGTTTTTGAAGGGT 60.202 41.667 0.00 0.00 0.00 4.34
3263 3394 7.380602 GGATTTTGAAGATGTTCAGTTGAGTTG 59.619 37.037 5.34 0.00 43.66 3.16
3288 3419 2.033372 TGGTTGTAGAGTTCGACACCA 58.967 47.619 10.30 10.30 33.82 4.17
3299 3431 3.315191 AGTTCGACACCACATGGAAAAAG 59.685 43.478 4.53 0.00 38.94 2.27
3315 3447 8.742777 CATGGAAAAAGGACATTTTCATCTAGA 58.257 33.333 12.85 0.00 46.35 2.43
3326 3458 7.580910 ACATTTTCATCTAGATTGGACCATCT 58.419 34.615 1.33 3.41 0.00 2.90
3388 3520 4.268884 GCTATTCTGTGTTGCACTACTAGC 59.731 45.833 0.00 0.00 35.11 3.42
3397 3529 7.327975 TGTGTTGCACTACTAGCAGTATTATT 58.672 34.615 0.00 0.00 43.75 1.40
3437 3570 0.582005 GCGATGATTGTTCTACCCGC 59.418 55.000 0.00 0.00 34.71 6.13
3572 3705 1.399714 TAGGTCATGTAGCCTCGTGG 58.600 55.000 8.94 0.00 36.38 4.94
3595 3728 2.335933 ACGGAGGGAGGAAAGAAAGAA 58.664 47.619 0.00 0.00 0.00 2.52
3596 3729 2.709397 ACGGAGGGAGGAAAGAAAGAAA 59.291 45.455 0.00 0.00 0.00 2.52
3597 3730 3.330998 ACGGAGGGAGGAAAGAAAGAAAT 59.669 43.478 0.00 0.00 0.00 2.17
3598 3731 4.534897 ACGGAGGGAGGAAAGAAAGAAATA 59.465 41.667 0.00 0.00 0.00 1.40
3612 3745 3.120321 AGAAATACCTTGTGTGCGTGA 57.880 42.857 0.00 0.00 0.00 4.35
3613 3746 3.472652 AGAAATACCTTGTGTGCGTGAA 58.527 40.909 0.00 0.00 0.00 3.18
3665 3798 7.481798 CGTTAACTGAGAAGAAAATTATGCACC 59.518 37.037 3.71 0.00 0.00 5.01
3680 3815 1.337703 TGCACCAGTCAAAACATGCTC 59.662 47.619 0.00 0.00 34.14 4.26
3693 3861 1.066929 ACATGCTCTGCACATACACGA 60.067 47.619 0.00 0.00 43.04 4.35
3694 3862 2.207590 CATGCTCTGCACATACACGAT 58.792 47.619 0.00 0.00 43.04 3.73
3695 3863 2.385013 TGCTCTGCACATACACGATT 57.615 45.000 0.00 0.00 31.71 3.34
3696 3864 3.518634 TGCTCTGCACATACACGATTA 57.481 42.857 0.00 0.00 31.71 1.75
3697 3865 3.186909 TGCTCTGCACATACACGATTAC 58.813 45.455 0.00 0.00 31.71 1.89
3698 3866 3.119137 TGCTCTGCACATACACGATTACT 60.119 43.478 0.00 0.00 31.71 2.24
3699 3867 3.243877 GCTCTGCACATACACGATTACTG 59.756 47.826 0.00 0.00 0.00 2.74
3700 3868 3.780902 TCTGCACATACACGATTACTGG 58.219 45.455 0.00 0.00 0.00 4.00
3701 3869 3.194755 TCTGCACATACACGATTACTGGT 59.805 43.478 0.00 0.00 0.00 4.00
3702 3870 4.399934 TCTGCACATACACGATTACTGGTA 59.600 41.667 0.00 0.00 0.00 3.25
3703 3871 5.068591 TCTGCACATACACGATTACTGGTAT 59.931 40.000 0.00 0.00 0.00 2.73
3704 3872 6.263617 TCTGCACATACACGATTACTGGTATA 59.736 38.462 0.00 0.00 0.00 1.47
3705 3873 6.210796 TGCACATACACGATTACTGGTATAC 58.789 40.000 0.00 0.00 0.00 1.47
3706 3874 6.183360 TGCACATACACGATTACTGGTATACA 60.183 38.462 5.01 0.00 0.00 2.29
3707 3875 6.698329 GCACATACACGATTACTGGTATACAA 59.302 38.462 5.01 0.00 0.00 2.41
3708 3876 7.384115 GCACATACACGATTACTGGTATACAAT 59.616 37.037 5.01 0.00 0.00 2.71
3709 3877 9.902196 CACATACACGATTACTGGTATACAATA 57.098 33.333 5.01 0.00 0.00 1.90
3711 3879 9.073368 CATACACGATTACTGGTATACAATAGC 57.927 37.037 5.01 0.00 0.00 2.97
3712 3880 7.286215 ACACGATTACTGGTATACAATAGCT 57.714 36.000 5.01 0.00 0.00 3.32
3713 3881 8.400184 ACACGATTACTGGTATACAATAGCTA 57.600 34.615 5.01 0.00 0.00 3.32
3714 3882 8.512956 ACACGATTACTGGTATACAATAGCTAG 58.487 37.037 5.01 0.00 0.00 3.42
3715 3883 7.485277 CACGATTACTGGTATACAATAGCTAGC 59.515 40.741 6.62 6.62 0.00 3.42
3716 3884 7.176165 ACGATTACTGGTATACAATAGCTAGCA 59.824 37.037 18.83 3.19 0.00 3.49
3717 3885 8.191446 CGATTACTGGTATACAATAGCTAGCAT 58.809 37.037 18.83 5.66 0.00 3.79
3721 3889 8.651589 ACTGGTATACAATAGCTAGCATAAGA 57.348 34.615 18.83 0.00 0.00 2.10
3722 3890 8.744652 ACTGGTATACAATAGCTAGCATAAGAG 58.255 37.037 18.83 3.98 0.00 2.85
3723 3891 7.548097 TGGTATACAATAGCTAGCATAAGAGC 58.452 38.462 18.83 4.51 39.08 4.09
3724 3892 6.981559 GGTATACAATAGCTAGCATAAGAGCC 59.018 42.308 18.83 4.84 39.65 4.70
3725 3893 3.919216 ACAATAGCTAGCATAAGAGCCG 58.081 45.455 18.83 0.00 39.65 5.52
3729 3897 1.074752 GCTAGCATAAGAGCCGCATC 58.925 55.000 10.63 0.00 33.34 3.91
3743 3911 1.331756 CCGCATCACATTGGCTTACTC 59.668 52.381 0.00 0.00 0.00 2.59
3753 3921 7.062322 TCACATTGGCTTACTCATATCCAATT 58.938 34.615 2.38 0.00 42.90 2.32
3768 3937 8.034215 TCATATCCAATTTGTTTGCCAGTAAAG 58.966 33.333 0.00 0.00 33.73 1.85
3842 4011 6.182627 TGTTCTCACTATCTGGCAATTCAAT 58.817 36.000 0.00 0.00 0.00 2.57
3874 4043 0.400213 CCTGCTTGGACTGGGTGTAA 59.600 55.000 0.00 0.00 38.35 2.41
3882 4051 2.691011 TGGACTGGGTGTAACTTTTTGC 59.309 45.455 0.00 0.00 36.74 3.68
3892 4061 1.039856 AACTTTTTGCGTGCTCCCAT 58.960 45.000 0.00 0.00 0.00 4.00
3924 4093 2.029623 TCTATCTGCCGGACTGGTTAC 58.970 52.381 5.05 0.00 41.21 2.50
3943 4112 6.071840 TGGTTACCGTTCTTGAAATTAATGGG 60.072 38.462 0.00 0.00 34.23 4.00
3952 4121 9.463443 GTTCTTGAAATTAATGGGCATGTATAC 57.537 33.333 0.00 0.00 0.00 1.47
3986 4156 7.572523 TTTCACTCACTTGTCAGATTTTCAT 57.427 32.000 0.00 0.00 0.00 2.57
3987 4157 7.572523 TTCACTCACTTGTCAGATTTTCATT 57.427 32.000 0.00 0.00 0.00 2.57
3988 4158 7.194607 TCACTCACTTGTCAGATTTTCATTC 57.805 36.000 0.00 0.00 0.00 2.67
3989 4159 6.767423 TCACTCACTTGTCAGATTTTCATTCA 59.233 34.615 0.00 0.00 0.00 2.57
3998 4168 6.320926 TGTCAGATTTTCATTCACAGTTTCCA 59.679 34.615 0.00 0.00 0.00 3.53
4082 4252 1.135373 TGAAAGACGAGATCGACTGCC 60.135 52.381 9.58 4.76 42.84 4.85
4242 4420 6.369059 TCTTCTTTCTGAAACTGAAAGCAG 57.631 37.500 19.01 18.03 43.87 4.24
4721 4899 1.930817 GCCGTGCACTATCTACCATCG 60.931 57.143 16.19 0.00 0.00 3.84
4722 4900 1.409412 CGTGCACTATCTACCATCGC 58.591 55.000 16.19 0.00 0.00 4.58
4726 4904 1.269621 GCACTATCTACCATCGCCGTT 60.270 52.381 0.00 0.00 0.00 4.44
4729 4907 2.223735 ACTATCTACCATCGCCGTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
4736 4914 1.198867 CCATCGCCGTTGTGAAATCAA 59.801 47.619 0.00 0.00 34.04 2.57
4773 4967 2.254459 CACTGATCTGTGTACGAGTGC 58.746 52.381 21.12 0.00 33.61 4.40
4900 5122 2.874086 TCTGTCACACAAACTGCTGATG 59.126 45.455 0.00 0.00 0.00 3.07
5005 5227 2.749621 CAGTCCCAACCATCTTACTTGC 59.250 50.000 0.00 0.00 0.00 4.01
5077 5299 5.735892 CACAGCATTCATCGTTCAGTAATTG 59.264 40.000 0.00 0.00 0.00 2.32
5088 5310 9.782028 CATCGTTCAGTAATTGTTTTTGAATTG 57.218 29.630 0.00 0.00 31.28 2.32
5105 5327 3.359002 GCTGACAAGCCCCTGTTG 58.641 61.111 0.00 0.00 44.22 3.33
5158 5380 1.754803 TCGACACCCTCGATTAGCAAT 59.245 47.619 0.00 0.00 46.75 3.56
5186 5408 6.321181 CAGGCTAGCAAAATATGGAAAGGTAA 59.679 38.462 18.24 0.00 0.00 2.85
5188 5410 6.199393 GCTAGCAAAATATGGAAAGGTAACG 58.801 40.000 10.63 0.00 46.39 3.18
5189 5411 6.037830 GCTAGCAAAATATGGAAAGGTAACGA 59.962 38.462 10.63 0.00 46.39 3.85
5193 5415 5.813080 AAATATGGAAAGGTAACGAGTGC 57.187 39.130 0.00 0.00 46.39 4.40
5194 5416 2.109425 ATGGAAAGGTAACGAGTGCC 57.891 50.000 0.00 0.00 46.39 5.01
5198 5420 1.001633 GAAAGGTAACGAGTGCCTCCA 59.998 52.381 0.00 0.00 46.39 3.86
5199 5421 0.320697 AAGGTAACGAGTGCCTCCAC 59.679 55.000 0.00 0.00 46.39 4.02
5200 5422 1.079336 GGTAACGAGTGCCTCCACC 60.079 63.158 0.00 0.13 43.09 4.61
5201 5423 1.669440 GTAACGAGTGCCTCCACCA 59.331 57.895 0.00 0.00 43.09 4.17
5202 5424 0.389948 GTAACGAGTGCCTCCACCAG 60.390 60.000 0.00 0.00 43.09 4.00
5203 5425 0.830444 TAACGAGTGCCTCCACCAGT 60.830 55.000 0.00 0.00 43.09 4.00
5204 5426 2.100879 AACGAGTGCCTCCACCAGTC 62.101 60.000 0.00 0.00 43.09 3.51
5205 5427 2.574018 CGAGTGCCTCCACCAGTCA 61.574 63.158 0.00 0.00 43.09 3.41
5208 5430 1.968540 GTGCCTCCACCAGTCAAGC 60.969 63.158 0.00 0.00 35.92 4.01
5209 5431 2.431683 GCCTCCACCAGTCAAGCA 59.568 61.111 0.00 0.00 0.00 3.91
5210 5432 1.673665 GCCTCCACCAGTCAAGCAG 60.674 63.158 0.00 0.00 0.00 4.24
5211 5433 2.061220 CCTCCACCAGTCAAGCAGA 58.939 57.895 0.00 0.00 0.00 4.26
5261 5483 6.286240 TCACAGTGAGCTCATTAACACTAT 57.714 37.500 21.47 0.00 40.84 2.12
5262 5484 6.101997 TCACAGTGAGCTCATTAACACTATG 58.898 40.000 21.47 11.14 40.84 2.23
5268 5495 9.236006 AGTGAGCTCATTAACACTATGATTTTT 57.764 29.630 21.47 0.00 40.96 1.94
5337 5564 2.216046 CAAAGCTCTTCAGACACTGCA 58.784 47.619 0.00 0.00 0.00 4.41
5401 5628 2.489722 GGTGGCATTTCTCTCAAGAACC 59.510 50.000 0.00 0.00 41.23 3.62
5431 5658 0.744281 CTTCAAGTTTGCCGGTGGTT 59.256 50.000 1.90 0.00 0.00 3.67
5474 5702 2.799017 TGTGATGATTTCTTGGCTGCT 58.201 42.857 0.00 0.00 0.00 4.24
5503 5731 1.482593 GATGTGACGGTCCCTGAGATT 59.517 52.381 5.55 0.00 0.00 2.40
5557 5785 1.329906 GGATCAGAATGCACTGCTTCG 59.670 52.381 1.98 2.06 37.75 3.79
5587 5815 4.745649 AGTATCTCGACAAACTGTAAGCC 58.254 43.478 0.00 0.00 37.60 4.35
5797 6025 2.487372 TGCGCTGTCATTTTGCAAGATA 59.513 40.909 9.73 0.00 31.69 1.98
5940 6169 1.067846 GCCACGGGATTTTTCAGGAAC 60.068 52.381 0.00 0.00 0.00 3.62
5994 6223 1.202234 ACAGCAGATGTCATCGTCTCG 60.202 52.381 7.18 6.33 37.75 4.04
6003 6232 3.829048 ATCGTCTCGCCGATGACT 58.171 55.556 12.51 0.00 45.28 3.41
6024 6253 7.458397 TGACTGGGTATTTACTTTCAGTTCAT 58.542 34.615 0.00 0.00 34.70 2.57
6039 6268 4.020307 TCAGTTCATCACTCCTGCAATACA 60.020 41.667 0.00 0.00 30.92 2.29
6045 6274 4.019792 TCACTCCTGCAATACACACAAT 57.980 40.909 0.00 0.00 0.00 2.71
6080 6312 9.220767 GTGTTCATTATAGATTATCAACCCCTC 57.779 37.037 0.00 0.00 0.00 4.30
6194 6427 1.000938 CAGCAAACAGTTCCAGAAGCC 60.001 52.381 0.00 0.00 0.00 4.35
6197 6430 1.507141 AAACAGTTCCAGAAGCCGCG 61.507 55.000 0.00 0.00 0.00 6.46
6199 6432 1.961277 CAGTTCCAGAAGCCGCGTT 60.961 57.895 4.92 0.00 0.00 4.84
6217 6469 4.557301 CGCGTTTCCTAATTTCCATGTTTC 59.443 41.667 0.00 0.00 0.00 2.78
6223 6475 4.764823 TCCTAATTTCCATGTTTCTTGCGT 59.235 37.500 0.00 0.00 0.00 5.24
6224 6476 4.858692 CCTAATTTCCATGTTTCTTGCGTG 59.141 41.667 0.00 0.00 0.00 5.34
6225 6477 4.582701 AATTTCCATGTTTCTTGCGTGA 57.417 36.364 0.00 0.00 0.00 4.35
6226 6478 3.624326 TTTCCATGTTTCTTGCGTGAG 57.376 42.857 0.00 0.00 0.00 3.51
6548 6805 5.722021 AACAACTAAATGCGGAATCCTTT 57.278 34.783 0.00 0.00 0.00 3.11
6549 6806 6.827586 AACAACTAAATGCGGAATCCTTTA 57.172 33.333 0.00 0.00 0.00 1.85
6550 6807 6.190954 ACAACTAAATGCGGAATCCTTTAC 57.809 37.500 0.00 0.00 0.00 2.01
6551 6808 5.944007 ACAACTAAATGCGGAATCCTTTACT 59.056 36.000 0.00 0.00 0.00 2.24
6553 6810 5.123936 ACTAAATGCGGAATCCTTTACTCC 58.876 41.667 0.00 0.00 0.00 3.85
6554 6811 2.640316 ATGCGGAATCCTTTACTCCC 57.360 50.000 0.00 0.00 0.00 4.30
6565 6823 5.242795 TCCTTTACTCCCTTTTCTTCCAG 57.757 43.478 0.00 0.00 0.00 3.86
6658 6916 9.478019 GATTTTGTTATACTGATCACTGAAACG 57.522 33.333 0.00 0.00 0.00 3.60
6783 7045 1.092921 AAAGCACAGAAACGGCGTCA 61.093 50.000 15.17 0.00 0.00 4.35
6897 7162 6.942576 GGTTAGGAAATGGTAGATGCATATGT 59.057 38.462 3.54 0.00 0.00 2.29
6934 7203 4.080695 TCCAGTTTGCTGATGAGCTATCTT 60.081 41.667 5.57 0.00 46.39 2.40
6941 7210 6.822667 TGCTGATGAGCTATCTTTTTCAAA 57.177 33.333 5.57 0.00 46.39 2.69
6949 7218 8.125978 TGAGCTATCTTTTTCAAACATGGAAT 57.874 30.769 0.00 0.00 0.00 3.01
6950 7219 9.241919 TGAGCTATCTTTTTCAAACATGGAATA 57.758 29.630 0.00 0.00 0.00 1.75
6951 7220 9.727627 GAGCTATCTTTTTCAAACATGGAATAG 57.272 33.333 0.00 0.00 0.00 1.73
6952 7221 9.466497 AGCTATCTTTTTCAAACATGGAATAGA 57.534 29.630 0.00 0.00 0.00 1.98
6988 7261 4.638865 TCAATCTCTTGTCATGCCATCTTG 59.361 41.667 0.00 0.00 33.87 3.02
6990 7263 3.340928 TCTCTTGTCATGCCATCTTGTG 58.659 45.455 0.00 0.00 0.00 3.33
6997 7270 3.693085 GTCATGCCATCTTGTGAAGTGAT 59.307 43.478 0.00 0.00 0.00 3.06
7045 7318 3.296854 TCAGTTGTCCAGTACTCACAGT 58.703 45.455 0.00 0.00 0.00 3.55
7132 7405 6.840780 ATGCTAAGTTTAATTGCCTTGAGT 57.159 33.333 0.00 0.00 0.00 3.41
7164 7440 5.951747 AGTAACCAATTTATGCATGTCCAGT 59.048 36.000 10.16 0.00 0.00 4.00
7165 7441 4.724074 ACCAATTTATGCATGTCCAGTG 57.276 40.909 10.16 0.00 0.00 3.66
7171 7447 7.765360 CCAATTTATGCATGTCCAGTGTTAAAT 59.235 33.333 10.16 0.11 0.00 1.40
7173 7449 9.723601 AATTTATGCATGTCCAGTGTTAAATTT 57.276 25.926 10.16 0.00 31.11 1.82
7174 7450 8.531622 TTTATGCATGTCCAGTGTTAAATTTG 57.468 30.769 10.16 0.00 0.00 2.32
7175 7451 5.528043 TGCATGTCCAGTGTTAAATTTGT 57.472 34.783 0.00 0.00 0.00 2.83
7176 7452 5.527951 TGCATGTCCAGTGTTAAATTTGTC 58.472 37.500 0.00 0.00 0.00 3.18
7178 7454 6.183360 TGCATGTCCAGTGTTAAATTTGTCTT 60.183 34.615 0.00 0.00 0.00 3.01
7179 7455 6.144402 GCATGTCCAGTGTTAAATTTGTCTTG 59.856 38.462 0.00 0.00 0.00 3.02
7180 7456 6.142818 TGTCCAGTGTTAAATTTGTCTTGG 57.857 37.500 0.00 2.99 0.00 3.61
7181 7457 5.654650 TGTCCAGTGTTAAATTTGTCTTGGT 59.345 36.000 0.00 0.00 0.00 3.67
7215 7518 7.116819 CGCTTAATTTGTCTTGTTTTTGGTTC 58.883 34.615 0.00 0.00 0.00 3.62
7272 7575 1.276622 CCACCTATAATCCTCCCCGG 58.723 60.000 0.00 0.00 0.00 5.73
7278 7581 5.013808 CACCTATAATCCTCCCCGGTAAAAT 59.986 44.000 0.00 0.00 0.00 1.82
7472 7779 1.745232 TCCACTTGAACCACACACAC 58.255 50.000 0.00 0.00 0.00 3.82
7512 7819 5.462034 TGCACATTTAAGCACAAAAACAC 57.538 34.783 0.00 0.00 35.51 3.32
7625 8439 3.934391 CTCGCGGCGGGAGTTTCTT 62.934 63.158 36.58 0.00 37.75 2.52
7641 8455 3.602513 CTTGAGGCGGCTCTGTGCT 62.603 63.158 35.12 1.88 42.39 4.40
7649 8463 0.390866 CGGCTCTGTGCTGTCTGATT 60.391 55.000 2.46 0.00 42.87 2.57
7654 8468 1.072806 TCTGTGCTGTCTGATTTGCCT 59.927 47.619 0.00 0.00 0.00 4.75
7695 8509 3.325293 ACACAGCTGGAGTGTCATAAG 57.675 47.619 19.93 0.00 46.57 1.73
7696 8510 2.027745 ACACAGCTGGAGTGTCATAAGG 60.028 50.000 19.93 0.00 46.57 2.69
7697 8511 2.027745 CACAGCTGGAGTGTCATAAGGT 60.028 50.000 19.93 0.00 32.44 3.50
7698 8512 2.234908 ACAGCTGGAGTGTCATAAGGTC 59.765 50.000 19.93 0.00 0.00 3.85
7699 8513 1.834263 AGCTGGAGTGTCATAAGGTCC 59.166 52.381 0.00 0.00 0.00 4.46
7700 8514 1.555075 GCTGGAGTGTCATAAGGTCCA 59.445 52.381 0.00 0.00 35.93 4.02
7701 8515 3.533606 CTGGAGTGTCATAAGGTCCAG 57.466 52.381 2.42 2.42 46.28 3.86
7702 8516 2.834549 CTGGAGTGTCATAAGGTCCAGT 59.165 50.000 8.29 0.00 46.30 4.00
7703 8517 4.023980 CTGGAGTGTCATAAGGTCCAGTA 58.976 47.826 8.29 0.00 46.30 2.74
7704 8518 3.767673 TGGAGTGTCATAAGGTCCAGTAC 59.232 47.826 0.00 0.00 32.21 2.73
7705 8519 3.181489 GGAGTGTCATAAGGTCCAGTACG 60.181 52.174 0.00 0.00 0.00 3.67
7706 8520 2.165845 AGTGTCATAAGGTCCAGTACGC 59.834 50.000 0.00 0.00 0.00 4.42
7707 8521 2.165845 GTGTCATAAGGTCCAGTACGCT 59.834 50.000 0.00 0.00 0.00 5.07
7708 8522 2.165641 TGTCATAAGGTCCAGTACGCTG 59.834 50.000 0.00 0.00 42.22 5.18
7743 8557 1.551503 CGTCCATCCATCGACATGCG 61.552 60.000 0.00 0.00 42.69 4.73
7818 8632 7.915397 ACCATTGCGATAGTGATTATTTTCAAC 59.085 33.333 0.00 0.00 39.35 3.18
7974 8790 8.711170 AGGAATCAATCTTTTGCCATCAATTAT 58.289 29.630 0.00 0.00 32.61 1.28
8032 12183 8.184192 CGACAATAACTATTTTCTTGCTGGAAT 58.816 33.333 0.00 0.00 0.00 3.01
8037 12188 3.747099 ATTTTCTTGCTGGAATCGACG 57.253 42.857 0.00 0.00 0.00 5.12
8038 12189 1.438651 TTTCTTGCTGGAATCGACGG 58.561 50.000 0.00 0.00 0.00 4.79
8039 12190 0.320374 TTCTTGCTGGAATCGACGGT 59.680 50.000 0.00 0.00 0.00 4.83
8040 12191 0.108804 TCTTGCTGGAATCGACGGTC 60.109 55.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.544244 GCTTGGTCGATATGTTTTCTCGC 60.544 47.826 0.00 0.00 32.62 5.03
1 2 3.616821 TGCTTGGTCGATATGTTTTCTCG 59.383 43.478 0.00 0.00 0.00 4.04
2 3 5.741388 ATGCTTGGTCGATATGTTTTCTC 57.259 39.130 0.00 0.00 0.00 2.87
3 4 6.767902 ACATATGCTTGGTCGATATGTTTTCT 59.232 34.615 1.58 0.00 39.27 2.52
5 6 6.017109 GGACATATGCTTGGTCGATATGTTTT 60.017 38.462 1.58 0.00 41.32 2.43
6 7 5.470098 GGACATATGCTTGGTCGATATGTTT 59.530 40.000 1.58 0.00 41.32 2.83
7 8 4.997395 GGACATATGCTTGGTCGATATGTT 59.003 41.667 1.58 0.00 41.32 2.71
8 9 4.569943 GGACATATGCTTGGTCGATATGT 58.430 43.478 1.58 5.50 43.04 2.29
9 10 3.614176 CGGACATATGCTTGGTCGATATG 59.386 47.826 1.58 0.00 36.52 1.78
10 11 3.258372 ACGGACATATGCTTGGTCGATAT 59.742 43.478 1.58 0.00 32.39 1.63
11 12 2.626266 ACGGACATATGCTTGGTCGATA 59.374 45.455 1.58 0.00 32.39 2.92
12 13 1.412710 ACGGACATATGCTTGGTCGAT 59.587 47.619 1.58 0.00 32.39 3.59
13 14 0.821517 ACGGACATATGCTTGGTCGA 59.178 50.000 1.58 0.00 32.39 4.20
14 15 1.202417 AGACGGACATATGCTTGGTCG 60.202 52.381 1.58 1.03 32.39 4.79
15 16 2.604046 AGACGGACATATGCTTGGTC 57.396 50.000 1.58 5.74 0.00 4.02
16 17 2.027192 ACAAGACGGACATATGCTTGGT 60.027 45.455 18.40 6.89 40.04 3.67
103 104 7.683437 TGAGAGAATTTCTAGAACTACGTCA 57.317 36.000 4.18 1.96 35.87 4.35
141 175 7.519970 GCACCAAGGAAATACTGATAATAACGG 60.520 40.741 0.00 0.00 0.00 4.44
142 176 7.352739 GCACCAAGGAAATACTGATAATAACG 58.647 38.462 0.00 0.00 0.00 3.18
143 177 7.502561 AGGCACCAAGGAAATACTGATAATAAC 59.497 37.037 0.00 0.00 0.00 1.89
144 178 7.582719 AGGCACCAAGGAAATACTGATAATAA 58.417 34.615 0.00 0.00 0.00 1.40
146 180 6.018433 AGGCACCAAGGAAATACTGATAAT 57.982 37.500 0.00 0.00 0.00 1.28
148 182 6.069905 TGTTAGGCACCAAGGAAATACTGATA 60.070 38.462 0.00 0.00 0.00 2.15
149 183 5.193679 GTTAGGCACCAAGGAAATACTGAT 58.806 41.667 0.00 0.00 0.00 2.90
150 184 4.042311 TGTTAGGCACCAAGGAAATACTGA 59.958 41.667 0.00 0.00 0.00 3.41
151 185 4.156008 GTGTTAGGCACCAAGGAAATACTG 59.844 45.833 0.00 0.00 42.10 2.74
152 186 4.332828 GTGTTAGGCACCAAGGAAATACT 58.667 43.478 0.00 0.00 42.10 2.12
153 187 3.126343 CGTGTTAGGCACCAAGGAAATAC 59.874 47.826 0.00 0.00 44.97 1.89
154 188 3.008157 TCGTGTTAGGCACCAAGGAAATA 59.992 43.478 0.00 0.00 44.97 1.40
155 189 2.159382 CGTGTTAGGCACCAAGGAAAT 58.841 47.619 0.00 0.00 44.97 2.17
237 273 3.845775 CGTCACTTCAAACGCCATAAATG 59.154 43.478 0.00 0.00 31.48 2.32
238 274 4.078363 CGTCACTTCAAACGCCATAAAT 57.922 40.909 0.00 0.00 31.48 1.40
249 285 2.354510 CTCAGTTTTGGCGTCACTTCAA 59.645 45.455 0.00 0.00 0.00 2.69
259 295 4.037923 TCAAGGAATGAACTCAGTTTTGGC 59.962 41.667 0.00 0.00 34.30 4.52
260 296 5.772825 TCAAGGAATGAACTCAGTTTTGG 57.227 39.130 0.00 0.00 34.30 3.28
287 324 9.899226 AAATTTTCAGGAAATAAACTTCTCGAG 57.101 29.630 5.93 5.93 36.96 4.04
314 351 6.583806 AGACGTACTAAAGAATGTGTTAACGG 59.416 38.462 0.26 0.00 0.00 4.44
327 364 5.921408 ACTCTTTCTTGCAGACGTACTAAAG 59.079 40.000 0.00 0.00 0.00 1.85
336 374 3.072944 AGCATCACTCTTTCTTGCAGAC 58.927 45.455 0.00 0.00 35.79 3.51
358 396 6.645003 CCTTATGTTTGTTTTCTTAACCTGGC 59.355 38.462 0.00 0.00 0.00 4.85
404 446 4.200092 GGATCACCATCAACCCTTCTAAC 58.800 47.826 0.00 0.00 35.97 2.34
571 617 1.577328 GCATGTGGTGTCAAGTCGGG 61.577 60.000 0.00 0.00 0.00 5.14
597 643 1.447314 GGTTTGACTAGTCGGCCCG 60.447 63.158 17.85 0.00 0.00 6.13
599 645 0.320697 ACTGGTTTGACTAGTCGGCC 59.679 55.000 17.85 17.89 34.71 6.13
600 646 1.711206 GACTGGTTTGACTAGTCGGC 58.289 55.000 17.85 9.96 44.66 5.54
604 650 2.258109 GGGAGGACTGGTTTGACTAGT 58.742 52.381 0.00 0.00 42.87 2.57
606 652 1.263356 CGGGAGGACTGGTTTGACTA 58.737 55.000 0.00 0.00 0.00 2.59
608 654 1.671379 GCGGGAGGACTGGTTTGAC 60.671 63.158 0.00 0.00 0.00 3.18
609 655 1.827399 GAGCGGGAGGACTGGTTTGA 61.827 60.000 0.00 0.00 36.02 2.69
610 656 1.376037 GAGCGGGAGGACTGGTTTG 60.376 63.158 0.00 0.00 36.02 2.93
611 657 2.593956 GGAGCGGGAGGACTGGTTT 61.594 63.158 0.00 0.00 36.02 3.27
612 658 2.164332 TAGGAGCGGGAGGACTGGTT 62.164 60.000 0.00 0.00 36.02 3.67
613 659 2.623450 TAGGAGCGGGAGGACTGGT 61.623 63.158 0.00 0.00 39.32 4.00
615 661 1.076632 AGTAGGAGCGGGAGGACTG 60.077 63.158 0.00 0.00 0.00 3.51
616 662 1.227946 GAGTAGGAGCGGGAGGACT 59.772 63.158 0.00 0.00 0.00 3.85
617 663 1.104577 CAGAGTAGGAGCGGGAGGAC 61.105 65.000 0.00 0.00 0.00 3.85
625 671 1.694844 GGTAGGGTCAGAGTAGGAGC 58.305 60.000 0.00 0.00 0.00 4.70
677 723 1.852157 TGGTTGGAGGGTGGAGCAT 60.852 57.895 0.00 0.00 0.00 3.79
678 724 2.449518 TGGTTGGAGGGTGGAGCA 60.450 61.111 0.00 0.00 0.00 4.26
679 725 2.034221 GTGGTTGGAGGGTGGAGC 59.966 66.667 0.00 0.00 0.00 4.70
680 726 1.427072 AAGGTGGTTGGAGGGTGGAG 61.427 60.000 0.00 0.00 0.00 3.86
685 731 2.283173 GGCAAGGTGGTTGGAGGG 60.283 66.667 0.00 0.00 36.56 4.30
823 877 4.156664 TGAAAACTTCTAGACGACCGAG 57.843 45.455 2.78 0.00 0.00 4.63
824 878 4.572985 TTGAAAACTTCTAGACGACCGA 57.427 40.909 2.78 0.00 0.00 4.69
825 879 4.921515 TGATTGAAAACTTCTAGACGACCG 59.078 41.667 2.78 0.00 0.00 4.79
826 880 6.780706 TTGATTGAAAACTTCTAGACGACC 57.219 37.500 2.78 0.00 0.00 4.79
908 962 1.507174 GACGACAACGAGGAGGGAG 59.493 63.158 0.00 0.00 42.66 4.30
909 963 2.330372 CGACGACAACGAGGAGGGA 61.330 63.158 0.00 0.00 42.66 4.20
1151 1214 1.365633 GGGCTGATGTAGAGCTCGG 59.634 63.158 8.37 0.00 36.63 4.63
1232 1295 1.405391 GCAGCAAGAAGAGAGGAGGAC 60.405 57.143 0.00 0.00 0.00 3.85
1301 1364 2.027745 ACACGAAGATCTTCACCAGCAT 60.028 45.455 29.93 9.24 39.46 3.79
1303 1366 1.728971 CACACGAAGATCTTCACCAGC 59.271 52.381 29.93 7.75 39.46 4.85
1361 1424 5.936372 TGAGATTGTCTTTCTTGAGGATGTG 59.064 40.000 0.00 0.00 0.00 3.21
1375 1438 3.755378 GCACCTTGTTGATGAGATTGTCT 59.245 43.478 0.00 0.00 0.00 3.41
1436 1501 3.694058 ATTGCGAGGCTCAGGCTGG 62.694 63.158 15.73 5.42 38.98 4.85
1437 1502 1.712977 GAATTGCGAGGCTCAGGCTG 61.713 60.000 15.95 8.58 38.98 4.85
1438 1503 1.451028 GAATTGCGAGGCTCAGGCT 60.451 57.895 15.95 0.00 42.48 4.58
1464 1531 0.034767 ACATGCATGTGGAGGTGAGG 60.035 55.000 30.92 0.83 40.03 3.86
1575 1678 7.172019 CAGAGCATTTCAGCAAAAGGTAAAAAT 59.828 33.333 0.00 0.00 36.85 1.82
1583 1687 3.299340 AGCAGAGCATTTCAGCAAAAG 57.701 42.857 0.00 0.00 40.51 2.27
1725 1839 3.966665 TCAAGGAAGGAATTTGGTGCTTT 59.033 39.130 0.00 0.00 0.00 3.51
1728 1842 3.511146 TGATCAAGGAAGGAATTTGGTGC 59.489 43.478 0.00 0.00 0.00 5.01
1988 2102 3.083997 CCCGAGCTGTAGGCCCTT 61.084 66.667 0.00 0.00 43.05 3.95
2051 2171 2.700722 TACACCTGCTGTCAACAACA 57.299 45.000 0.00 0.00 33.91 3.33
2052 2172 2.290641 CCTTACACCTGCTGTCAACAAC 59.709 50.000 0.00 0.00 33.91 3.32
2053 2173 2.092646 ACCTTACACCTGCTGTCAACAA 60.093 45.455 0.00 0.00 33.91 2.83
2089 2209 2.225491 TGCCGTTCGAAAAATGAGGAAG 59.775 45.455 0.00 0.00 0.00 3.46
2101 2221 4.989797 TGAGTTAATAAAAGTGCCGTTCGA 59.010 37.500 0.00 0.00 0.00 3.71
2102 2222 5.272167 TGAGTTAATAAAAGTGCCGTTCG 57.728 39.130 0.00 0.00 0.00 3.95
2107 2230 8.860128 GCTACATTTTGAGTTAATAAAAGTGCC 58.140 33.333 0.00 0.00 0.00 5.01
2110 2233 9.821662 GACGCTACATTTTGAGTTAATAAAAGT 57.178 29.630 0.00 0.00 0.00 2.66
2140 2263 2.092699 TCGCCCAATGTGATTGTATCCA 60.093 45.455 0.00 0.00 38.59 3.41
2141 2264 2.290641 GTCGCCCAATGTGATTGTATCC 59.709 50.000 0.00 0.00 38.59 2.59
2142 2265 2.942376 TGTCGCCCAATGTGATTGTATC 59.058 45.455 0.00 0.00 38.59 2.24
2157 2280 4.436998 CAGAGGACGGGTGTCGCC 62.437 72.222 0.00 0.00 46.49 5.54
2185 2308 9.913090 GAACATGTTCATATTGGCAGTGTGCAT 62.913 40.741 29.43 0.00 41.22 3.96
2186 2309 8.714031 GAACATGTTCATATTGGCAGTGTGCA 62.714 42.308 29.43 0.00 41.22 4.57
2187 2310 3.119388 ACATGTTCATATTGGCAGTGTGC 60.119 43.478 1.79 0.00 44.08 4.57
2188 2311 4.707030 ACATGTTCATATTGGCAGTGTG 57.293 40.909 0.15 0.15 0.00 3.82
2189 2312 4.142622 CGAACATGTTCATATTGGCAGTGT 60.143 41.667 32.06 0.00 39.46 3.55
2190 2313 4.345288 CGAACATGTTCATATTGGCAGTG 58.655 43.478 32.06 12.08 39.46 3.66
2191 2314 3.378112 CCGAACATGTTCATATTGGCAGT 59.622 43.478 32.06 0.00 39.46 4.40
2192 2315 3.793129 GCCGAACATGTTCATATTGGCAG 60.793 47.826 32.34 18.07 39.37 4.85
2193 2316 2.098934 GCCGAACATGTTCATATTGGCA 59.901 45.455 32.34 0.00 39.37 4.92
2194 2317 2.098934 TGCCGAACATGTTCATATTGGC 59.901 45.455 31.43 31.43 39.74 4.52
2195 2318 3.128415 TGTGCCGAACATGTTCATATTGG 59.872 43.478 32.06 25.43 39.46 3.16
2196 2319 4.354071 TGTGCCGAACATGTTCATATTG 57.646 40.909 32.06 18.28 39.46 1.90
2197 2320 5.384063 TTTGTGCCGAACATGTTCATATT 57.616 34.783 32.06 2.02 38.99 1.28
2198 2321 5.048083 ACTTTTGTGCCGAACATGTTCATAT 60.048 36.000 32.06 2.82 38.99 1.78
2199 2322 4.277174 ACTTTTGTGCCGAACATGTTCATA 59.723 37.500 32.06 17.83 38.99 2.15
2200 2323 3.068024 ACTTTTGTGCCGAACATGTTCAT 59.932 39.130 32.06 3.63 38.99 2.57
2201 2324 2.425312 ACTTTTGTGCCGAACATGTTCA 59.575 40.909 32.06 15.49 38.99 3.18
2236 2359 4.588899 ACTTTACTGCTGCCAATATGTCA 58.411 39.130 0.00 0.00 0.00 3.58
2296 2423 1.635817 TTCACTAGCCATGGCCCCTC 61.636 60.000 33.14 5.56 43.17 4.30
2297 2424 1.619363 TTCACTAGCCATGGCCCCT 60.619 57.895 33.14 17.69 43.17 4.79
2299 2426 0.749454 CAGTTCACTAGCCATGGCCC 60.749 60.000 33.14 7.24 43.17 5.80
2300 2427 0.035056 ACAGTTCACTAGCCATGGCC 60.035 55.000 33.14 15.76 43.17 5.36
2301 2428 2.168521 TCTACAGTTCACTAGCCATGGC 59.831 50.000 30.12 30.12 42.33 4.40
2302 2429 3.181471 CCTCTACAGTTCACTAGCCATGG 60.181 52.174 7.63 7.63 0.00 3.66
2303 2430 3.181471 CCCTCTACAGTTCACTAGCCATG 60.181 52.174 0.00 0.00 0.00 3.66
2304 2431 3.034635 CCCTCTACAGTTCACTAGCCAT 58.965 50.000 0.00 0.00 0.00 4.40
2336 2463 0.534412 TAAGAGAGTGCAGGCTCAGC 59.466 55.000 15.78 0.00 37.94 4.26
2376 2503 3.809832 CCTCCATAATTCACTTACCAGCG 59.190 47.826 0.00 0.00 0.00 5.18
2422 2549 1.303643 GGAACCTCTTGGCCACCTG 60.304 63.158 3.88 0.00 36.63 4.00
2572 2699 4.159857 TGCGCCGTGTGAAAATATAAAAC 58.840 39.130 4.18 0.00 0.00 2.43
2602 2729 8.143835 TGCTCTGTTCGATCTGATATAATTTGA 58.856 33.333 3.86 0.00 0.00 2.69
2603 2730 8.219769 GTGCTCTGTTCGATCTGATATAATTTG 58.780 37.037 3.86 0.00 0.00 2.32
2604 2731 7.115520 CGTGCTCTGTTCGATCTGATATAATTT 59.884 37.037 3.86 0.00 0.00 1.82
2606 2733 6.072452 TCGTGCTCTGTTCGATCTGATATAAT 60.072 38.462 3.86 0.00 0.00 1.28
2607 2734 5.238650 TCGTGCTCTGTTCGATCTGATATAA 59.761 40.000 3.86 0.00 0.00 0.98
2619 2746 3.084579 CGCCATCGTGCTCTGTTC 58.915 61.111 0.00 0.00 0.00 3.18
2717 2844 0.833287 TCATCCCTAGCTCTGTTGGC 59.167 55.000 0.00 0.00 0.00 4.52
2862 2989 5.104900 GGATGGGGTGTATGTCTATGTATCC 60.105 48.000 0.00 0.00 0.00 2.59
2863 2990 5.483937 TGGATGGGGTGTATGTCTATGTATC 59.516 44.000 0.00 0.00 0.00 2.24
2959 3086 7.986085 TTTTCAGCTAATAGGATGGATAAGC 57.014 36.000 0.00 0.00 0.00 3.09
3013 3140 2.467838 GCCGTTCCGTTTCCTCTATAC 58.532 52.381 0.00 0.00 0.00 1.47
3014 3141 1.066002 CGCCGTTCCGTTTCCTCTATA 59.934 52.381 0.00 0.00 0.00 1.31
3015 3142 0.179119 CGCCGTTCCGTTTCCTCTAT 60.179 55.000 0.00 0.00 0.00 1.98
3037 3164 1.860641 TATTCGACCAGCTCCCTTCA 58.139 50.000 0.00 0.00 0.00 3.02
3097 3228 4.082523 TGTAGCCACTCGCAGCCC 62.083 66.667 0.00 0.00 41.38 5.19
3100 3231 0.671781 AAAGCTGTAGCCACTCGCAG 60.672 55.000 0.00 0.00 43.38 5.18
3187 3318 3.698250 TGTGCCCTGTCACACTTAC 57.302 52.632 0.00 0.00 41.57 2.34
3250 3381 3.214328 ACCATGTCCAACTCAACTGAAC 58.786 45.455 0.00 0.00 0.00 3.18
3263 3394 3.251571 GTCGAACTCTACAACCATGTCC 58.748 50.000 0.00 0.00 41.05 4.02
3288 3419 7.307131 AGATGAAAATGTCCTTTTTCCATGT 57.693 32.000 12.90 5.80 42.37 3.21
3299 3431 6.122277 TGGTCCAATCTAGATGAAAATGTCC 58.878 40.000 5.86 6.06 0.00 4.02
3315 3447 5.587844 CGAATTTGAAGAGAGATGGTCCAAT 59.412 40.000 0.00 0.00 0.00 3.16
3326 3458 9.367444 GGAGAATTTAGTACGAATTTGAAGAGA 57.633 33.333 0.00 0.00 0.00 3.10
3388 3520 6.046593 TCCCAACTCGTTGCTAATAATACTG 58.953 40.000 4.30 0.00 39.16 2.74
3397 3529 2.811431 CACAAATCCCAACTCGTTGCTA 59.189 45.455 4.30 0.00 39.16 3.49
3572 3705 1.565067 TTCTTTCCTCCCTCCGTACC 58.435 55.000 0.00 0.00 0.00 3.34
3595 3728 4.640789 TTTTTCACGCACACAAGGTATT 57.359 36.364 0.00 0.00 0.00 1.89
3613 3746 5.950549 AGATCAGGATCTGTTCTGCATTTTT 59.049 36.000 10.86 0.00 45.77 1.94
3665 3798 2.033675 TGTGCAGAGCATGTTTTGACTG 59.966 45.455 4.17 0.00 41.91 3.51
3680 3815 3.521560 ACCAGTAATCGTGTATGTGCAG 58.478 45.455 0.00 0.00 0.00 4.41
3695 3863 9.749340 TCTTATGCTAGCTATTGTATACCAGTA 57.251 33.333 17.23 0.00 0.00 2.74
3696 3864 8.651589 TCTTATGCTAGCTATTGTATACCAGT 57.348 34.615 17.23 0.00 0.00 4.00
3697 3865 7.704472 GCTCTTATGCTAGCTATTGTATACCAG 59.296 40.741 17.23 3.95 35.80 4.00
3698 3866 7.363880 GGCTCTTATGCTAGCTATTGTATACCA 60.364 40.741 17.23 0.00 38.80 3.25
3699 3867 6.981559 GGCTCTTATGCTAGCTATTGTATACC 59.018 42.308 17.23 3.80 38.80 2.73
3700 3868 6.693545 CGGCTCTTATGCTAGCTATTGTATAC 59.306 42.308 17.23 0.00 38.80 1.47
3701 3869 6.680625 GCGGCTCTTATGCTAGCTATTGTATA 60.681 42.308 17.23 0.98 38.80 1.47
3702 3870 5.655488 CGGCTCTTATGCTAGCTATTGTAT 58.345 41.667 17.23 2.04 38.80 2.29
3703 3871 4.618460 GCGGCTCTTATGCTAGCTATTGTA 60.618 45.833 17.23 0.00 38.80 2.41
3704 3872 3.862642 GCGGCTCTTATGCTAGCTATTGT 60.863 47.826 17.23 0.00 38.80 2.71
3705 3873 2.670414 GCGGCTCTTATGCTAGCTATTG 59.330 50.000 17.23 4.26 38.80 1.90
3706 3874 2.300152 TGCGGCTCTTATGCTAGCTATT 59.700 45.455 17.23 3.47 38.80 1.73
3707 3875 1.895798 TGCGGCTCTTATGCTAGCTAT 59.104 47.619 17.23 10.27 38.80 2.97
3708 3876 1.328279 TGCGGCTCTTATGCTAGCTA 58.672 50.000 17.23 2.58 38.80 3.32
3709 3877 0.683973 ATGCGGCTCTTATGCTAGCT 59.316 50.000 17.23 4.07 38.80 3.32
3710 3878 1.074752 GATGCGGCTCTTATGCTAGC 58.925 55.000 8.10 8.10 38.03 3.42
3711 3879 2.064762 GTGATGCGGCTCTTATGCTAG 58.935 52.381 0.00 0.00 0.00 3.42
3712 3880 1.412343 TGTGATGCGGCTCTTATGCTA 59.588 47.619 0.00 0.00 0.00 3.49
3713 3881 0.178767 TGTGATGCGGCTCTTATGCT 59.821 50.000 0.00 0.00 0.00 3.79
3714 3882 1.233019 ATGTGATGCGGCTCTTATGC 58.767 50.000 0.00 0.00 0.00 3.14
3715 3883 2.031420 CCAATGTGATGCGGCTCTTATG 60.031 50.000 0.00 0.00 0.00 1.90
3716 3884 2.224606 CCAATGTGATGCGGCTCTTAT 58.775 47.619 0.00 0.00 0.00 1.73
3717 3885 1.667236 CCAATGTGATGCGGCTCTTA 58.333 50.000 0.00 0.00 0.00 2.10
3718 3886 1.660560 GCCAATGTGATGCGGCTCTT 61.661 55.000 0.00 0.00 41.50 2.85
3719 3887 2.117156 GCCAATGTGATGCGGCTCT 61.117 57.895 0.00 0.00 41.50 4.09
3720 3888 2.410469 GCCAATGTGATGCGGCTC 59.590 61.111 0.00 0.00 41.50 4.70
3722 3890 0.248621 GTAAGCCAATGTGATGCGGC 60.249 55.000 0.00 0.00 45.23 6.53
3723 3891 1.331756 GAGTAAGCCAATGTGATGCGG 59.668 52.381 0.00 0.00 0.00 5.69
3724 3892 2.009051 TGAGTAAGCCAATGTGATGCG 58.991 47.619 0.00 0.00 0.00 4.73
3725 3893 5.106396 GGATATGAGTAAGCCAATGTGATGC 60.106 44.000 0.00 0.00 0.00 3.91
3729 3897 6.889301 ATTGGATATGAGTAAGCCAATGTG 57.111 37.500 4.90 0.00 45.00 3.21
3743 3911 7.818930 ACTTTACTGGCAAACAAATTGGATATG 59.181 33.333 0.00 0.00 39.54 1.78
3753 3921 6.518208 AACTGTAACTTTACTGGCAAACAA 57.482 33.333 9.88 0.00 37.05 2.83
3804 3973 0.106217 AGAACAAACCCACCACCCTG 60.106 55.000 0.00 0.00 0.00 4.45
3859 4028 4.736464 GCAAAAAGTTACACCCAGTCCAAG 60.736 45.833 0.00 0.00 0.00 3.61
3874 4043 1.904287 TATGGGAGCACGCAAAAAGT 58.096 45.000 4.78 0.00 41.96 2.66
3882 4051 2.744202 GAGCCAAATATATGGGAGCACG 59.256 50.000 7.67 0.00 41.01 5.34
3924 4093 4.448537 TGCCCATTAATTTCAAGAACGG 57.551 40.909 0.00 0.00 0.00 4.44
3952 4121 4.887655 ACAAGTGAGTGAAAACCTAAAGGG 59.112 41.667 0.20 0.00 40.27 3.95
3986 4156 6.378564 TCAGGTACAAAAATGGAAACTGTGAA 59.621 34.615 0.00 0.00 0.00 3.18
3987 4157 5.888724 TCAGGTACAAAAATGGAAACTGTGA 59.111 36.000 0.00 0.00 0.00 3.58
3988 4158 6.142818 TCAGGTACAAAAATGGAAACTGTG 57.857 37.500 0.00 0.00 0.00 3.66
3989 4159 6.406512 GGTTCAGGTACAAAAATGGAAACTGT 60.407 38.462 0.00 0.00 0.00 3.55
3998 4168 3.613910 GCATGCGGTTCAGGTACAAAAAT 60.614 43.478 0.00 0.00 0.00 1.82
4082 4252 2.933287 TGTGGTGGGGTAGGGCAG 60.933 66.667 0.00 0.00 0.00 4.85
4120 4290 2.817258 AGCAAACTTATTAAGGTGCGCA 59.183 40.909 5.66 5.66 43.99 6.09
4242 4420 2.241722 CATTCAAACCGTCATCGTTGC 58.758 47.619 0.00 0.00 35.01 4.17
4448 4626 1.479730 GGGGTTAGTTAGGAGACGTGG 59.520 57.143 0.00 0.00 0.00 4.94
4451 4629 1.856629 TGGGGGTTAGTTAGGAGACG 58.143 55.000 0.00 0.00 0.00 4.18
4457 4635 1.202651 CGAGGCATGGGGGTTAGTTAG 60.203 57.143 0.00 0.00 0.00 2.34
4458 4636 0.834612 CGAGGCATGGGGGTTAGTTA 59.165 55.000 0.00 0.00 0.00 2.24
4459 4637 1.205460 ACGAGGCATGGGGGTTAGTT 61.205 55.000 0.00 0.00 0.00 2.24
4460 4638 1.615424 ACGAGGCATGGGGGTTAGT 60.615 57.895 0.00 0.00 0.00 2.24
4485 4663 3.499737 CCCATGAACGCCGTCAGC 61.500 66.667 0.00 0.00 38.52 4.26
4702 4880 1.930817 GCGATGGTAGATAGTGCACGG 60.931 57.143 12.01 0.00 0.00 4.94
4703 4881 1.409412 GCGATGGTAGATAGTGCACG 58.591 55.000 12.01 0.00 0.00 5.34
4706 4884 0.314302 ACGGCGATGGTAGATAGTGC 59.686 55.000 16.62 0.00 0.00 4.40
4709 4887 2.034179 TCACAACGGCGATGGTAGATAG 59.966 50.000 21.20 2.66 0.00 2.08
4710 4888 2.025898 TCACAACGGCGATGGTAGATA 58.974 47.619 21.20 0.00 0.00 1.98
4726 4904 5.063204 AGGTCTCGAAATGTTGATTTCACA 58.937 37.500 7.96 0.00 45.45 3.58
4729 4907 6.080406 GTCAAGGTCTCGAAATGTTGATTTC 58.920 40.000 0.00 0.00 42.84 2.17
4736 4914 3.069586 TCAGTGTCAAGGTCTCGAAATGT 59.930 43.478 0.00 0.00 0.00 2.71
4765 4959 6.170506 ACTCTGGAAAATATTTGCACTCGTA 58.829 36.000 8.47 0.00 0.00 3.43
4769 4963 7.309438 GGAAGAACTCTGGAAAATATTTGCACT 60.309 37.037 8.47 0.00 0.00 4.40
4770 4964 6.808704 GGAAGAACTCTGGAAAATATTTGCAC 59.191 38.462 8.47 0.00 0.00 4.57
4773 4967 8.025445 CAGTGGAAGAACTCTGGAAAATATTTG 58.975 37.037 0.39 0.00 0.00 2.32
4900 5122 8.654230 TTACTTATCAGATCAGCAAGATTGAC 57.346 34.615 0.00 0.00 37.00 3.18
4949 5171 6.149633 GCCGAGTAACTGAAATTGACAAATT 58.850 36.000 0.00 0.00 37.61 1.82
4950 5172 5.335661 GGCCGAGTAACTGAAATTGACAAAT 60.336 40.000 0.00 0.00 0.00 2.32
4951 5173 4.023536 GGCCGAGTAACTGAAATTGACAAA 60.024 41.667 0.00 0.00 0.00 2.83
4952 5174 3.500680 GGCCGAGTAACTGAAATTGACAA 59.499 43.478 0.00 0.00 0.00 3.18
5005 5227 1.734163 AGAGCCGTTTGATTTACCCG 58.266 50.000 0.00 0.00 0.00 5.28
5088 5310 1.529244 ACAACAGGGGCTTGTCAGC 60.529 57.895 0.00 0.00 46.52 4.26
5158 5380 4.502105 TCCATATTTTGCTAGCCTGACA 57.498 40.909 13.29 0.00 0.00 3.58
5189 5411 1.757306 CTTGACTGGTGGAGGCACT 59.243 57.895 0.00 0.00 40.58 4.40
5193 5415 0.321122 GTCTGCTTGACTGGTGGAGG 60.321 60.000 3.72 0.00 42.21 4.30
5194 5416 0.394192 TGTCTGCTTGACTGGTGGAG 59.606 55.000 10.73 0.00 45.54 3.86
5198 5420 0.767375 ATGGTGTCTGCTTGACTGGT 59.233 50.000 10.73 0.00 45.54 4.00
5199 5421 1.162698 CATGGTGTCTGCTTGACTGG 58.837 55.000 10.73 0.00 45.54 4.00
5200 5422 1.888215 ACATGGTGTCTGCTTGACTG 58.112 50.000 0.00 4.65 45.54 3.51
5201 5423 2.645838 AACATGGTGTCTGCTTGACT 57.354 45.000 0.00 0.00 45.54 3.41
5202 5424 5.376854 AAATAACATGGTGTCTGCTTGAC 57.623 39.130 0.00 3.95 45.54 3.18
5203 5425 6.349280 GCTTAAATAACATGGTGTCTGCTTGA 60.349 38.462 0.00 0.00 0.00 3.02
5204 5426 5.801947 GCTTAAATAACATGGTGTCTGCTTG 59.198 40.000 0.00 0.00 0.00 4.01
5205 5427 5.711976 AGCTTAAATAACATGGTGTCTGCTT 59.288 36.000 0.00 0.00 0.00 3.91
5208 5430 6.375455 AGGAAGCTTAAATAACATGGTGTCTG 59.625 38.462 0.00 0.00 0.00 3.51
5209 5431 6.485171 AGGAAGCTTAAATAACATGGTGTCT 58.515 36.000 0.00 0.00 0.00 3.41
5210 5432 6.374333 TGAGGAAGCTTAAATAACATGGTGTC 59.626 38.462 0.00 0.00 0.00 3.67
5211 5433 6.245408 TGAGGAAGCTTAAATAACATGGTGT 58.755 36.000 0.00 0.00 0.00 4.16
5212 5434 6.757897 TGAGGAAGCTTAAATAACATGGTG 57.242 37.500 0.00 0.00 0.00 4.17
5213 5435 6.948309 AGTTGAGGAAGCTTAAATAACATGGT 59.052 34.615 0.00 0.00 0.00 3.55
5214 5436 7.121168 TGAGTTGAGGAAGCTTAAATAACATGG 59.879 37.037 0.00 0.00 0.00 3.66
5215 5437 7.965107 GTGAGTTGAGGAAGCTTAAATAACATG 59.035 37.037 0.00 0.00 0.00 3.21
5216 5438 7.665559 TGTGAGTTGAGGAAGCTTAAATAACAT 59.334 33.333 0.00 0.00 0.00 2.71
5268 5495 6.183360 GGAACTGTCGTTAAACCACTGTAAAA 60.183 38.462 0.00 0.00 32.39 1.52
5337 5564 2.435938 CCCAGCCGTATTGTGCGT 60.436 61.111 0.00 0.00 0.00 5.24
5401 5628 4.038402 GGCAAACTTGAAGATATCATGGGG 59.962 45.833 5.32 0.00 38.03 4.96
5474 5702 2.366533 GACCGTCACATCCAGAGTCTA 58.633 52.381 0.00 0.00 0.00 2.59
5557 5785 4.083802 AGTTTGTCGAGATACTTTGCAAGC 60.084 41.667 0.00 0.00 0.00 4.01
5638 5866 1.002033 CAAGTCAGTTCAGCCACAAGC 60.002 52.381 0.00 0.00 44.25 4.01
5940 6169 4.511454 TCTTTGTGAAAGAACATCTGACGG 59.489 41.667 0.00 0.00 44.10 4.79
5994 6223 3.470645 AGTAAATACCCAGTCATCGGC 57.529 47.619 0.00 0.00 0.00 5.54
6024 6253 3.483808 TTGTGTGTATTGCAGGAGTGA 57.516 42.857 0.00 0.00 0.00 3.41
6062 6294 4.836175 TGCACGAGGGGTTGATAATCTATA 59.164 41.667 0.00 0.00 0.00 1.31
6166 6399 3.953612 TGGAACTGTTTGCTGAATTCTGT 59.046 39.130 13.17 0.00 0.00 3.41
6194 6427 3.757745 ACATGGAAATTAGGAAACGCG 57.242 42.857 3.53 3.53 0.00 6.01
6197 6430 6.089417 CGCAAGAAACATGGAAATTAGGAAAC 59.911 38.462 0.00 0.00 43.02 2.78
6199 6432 5.242838 ACGCAAGAAACATGGAAATTAGGAA 59.757 36.000 0.00 0.00 43.62 3.36
6223 6475 4.843728 CACCAAGTTAGGGAATTAGCTCA 58.156 43.478 0.00 0.00 0.00 4.26
6224 6476 3.628032 GCACCAAGTTAGGGAATTAGCTC 59.372 47.826 0.00 0.00 0.00 4.09
6225 6477 3.267031 AGCACCAAGTTAGGGAATTAGCT 59.733 43.478 0.00 0.00 0.00 3.32
6226 6478 3.621558 AGCACCAAGTTAGGGAATTAGC 58.378 45.455 0.00 0.00 0.00 3.09
6227 6479 4.878397 CAGAGCACCAAGTTAGGGAATTAG 59.122 45.833 0.00 0.00 0.00 1.73
6228 6480 4.288626 ACAGAGCACCAAGTTAGGGAATTA 59.711 41.667 0.00 0.00 0.00 1.40
6229 6481 3.074538 ACAGAGCACCAAGTTAGGGAATT 59.925 43.478 0.00 0.00 0.00 2.17
6231 6483 2.054799 ACAGAGCACCAAGTTAGGGAA 58.945 47.619 0.00 0.00 0.00 3.97
6233 6485 2.568623 AACAGAGCACCAAGTTAGGG 57.431 50.000 0.00 0.00 0.00 3.53
6338 6590 8.307483 TCTGAAGAAGGTAGAACATGTTTAGAG 58.693 37.037 13.36 0.00 0.00 2.43
6565 6823 8.727910 AGTAAACGGTTATTTCTTTTCAGGATC 58.272 33.333 0.00 0.00 0.00 3.36
6638 6896 5.519206 GGGACGTTTCAGTGATCAGTATAAC 59.481 44.000 1.86 9.31 0.00 1.89
6639 6897 5.657474 GGGACGTTTCAGTGATCAGTATAA 58.343 41.667 1.86 0.00 0.00 0.98
6658 6916 1.571215 CCAACGTAAAGCCACGGGAC 61.571 60.000 7.84 0.00 46.12 4.46
6783 7045 4.810790 AGACTTGATCGAAACGATGAGTT 58.189 39.130 11.26 4.63 47.00 3.01
6897 7162 5.480073 AGCAAACTGGAAAGCATAATAACCA 59.520 36.000 0.00 0.00 0.00 3.67
6956 7225 7.443575 GGCATGACAAGAGATTGATTACACTAT 59.556 37.037 0.00 0.00 0.00 2.12
6988 7261 6.128526 GGCTACACTTTTACTGATCACTTCAC 60.129 42.308 0.00 0.00 0.00 3.18
6990 7263 5.351740 GGGCTACACTTTTACTGATCACTTC 59.648 44.000 0.00 0.00 0.00 3.01
6997 7270 4.777896 AGAGATGGGCTACACTTTTACTGA 59.222 41.667 0.00 0.00 0.00 3.41
7045 7318 7.712639 GCTCTCCAAGATGTATCAAAGATACAA 59.287 37.037 19.97 7.53 37.93 2.41
7121 7394 4.851639 ACTCCAGATTACTCAAGGCAAT 57.148 40.909 0.00 0.00 0.00 3.56
7215 7518 1.742761 AGATGGTCGCCAAACATCTG 58.257 50.000 12.29 0.00 46.85 2.90
7472 7779 5.913637 TGTGCAAATTCGCATTTTTGTATG 58.086 33.333 0.00 0.00 45.26 2.39
7609 8423 3.788766 CAAGAAACTCCCGCCGCG 61.789 66.667 5.59 5.59 0.00 6.46
7620 8434 0.603707 CACAGAGCCGCCTCAAGAAA 60.604 55.000 0.00 0.00 40.68 2.52
7621 8435 1.004560 CACAGAGCCGCCTCAAGAA 60.005 57.895 0.00 0.00 40.68 2.52
7641 8455 2.229792 GTTGTCCAGGCAAATCAGACA 58.770 47.619 0.00 0.00 35.75 3.41
7645 8459 1.851021 CGCGTTGTCCAGGCAAATCA 61.851 55.000 0.00 0.00 35.91 2.57
7649 8463 3.276091 CACGCGTTGTCCAGGCAA 61.276 61.111 10.22 0.00 35.91 4.52
7680 8494 1.555075 TGGACCTTATGACACTCCAGC 59.445 52.381 0.00 0.00 0.00 4.85
7712 8526 2.099652 GATGGACGGATGGATGGCGA 62.100 60.000 0.00 0.00 0.00 5.54
7885 8699 5.633601 TCGTGACGCTGGATATGAAAATATC 59.366 40.000 0.00 0.00 33.80 1.63
7903 8717 4.901814 TCTAGTAAACTGCGTATCGTGAC 58.098 43.478 0.00 0.00 0.00 3.67
7940 8756 8.477256 TGGCAAAAGATTGATTCCTAAATTAGG 58.523 33.333 12.74 12.74 42.10 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.