Multiple sequence alignment - TraesCS1B01G443300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G443300 chr1B 100.000 4636 0 0 1 4636 664316840 664321475 0.000000e+00 8562.0
1 TraesCS1B01G443300 chr1B 95.465 838 35 3 3801 4636 664330193 664331029 0.000000e+00 1334.0
2 TraesCS1B01G443300 chr1B 88.803 518 33 21 3852 4354 617454361 617454868 3.070000e-171 612.0
3 TraesCS1B01G443300 chr1B 94.461 343 13 3 4299 4636 359962505 359962164 1.480000e-144 523.0
4 TraesCS1B01G443300 chr1B 94.208 259 13 2 4299 4555 532345374 532345632 1.210000e-105 394.0
5 TraesCS1B01G443300 chr1B 76.683 609 108 20 1035 1638 484465103 484464524 1.620000e-79 307.0
6 TraesCS1B01G443300 chr1B 76.020 613 111 30 1035 1641 484692731 484692149 7.590000e-73 285.0
7 TraesCS1B01G443300 chr1B 95.349 43 1 1 3759 3800 664345365 664345407 2.990000e-07 67.6
8 TraesCS1B01G443300 chr1D 93.401 1076 63 5 2691 3763 476870985 476869915 0.000000e+00 1587.0
9 TraesCS1B01G443300 chr1D 88.296 1350 88 31 402 1734 476873233 476871937 0.000000e+00 1554.0
10 TraesCS1B01G443300 chr1D 76.346 613 109 28 1035 1641 362132445 362131863 3.510000e-76 296.0
11 TraesCS1B01G443300 chr1D 75.941 611 109 23 1035 1638 362013085 362012506 3.530000e-71 279.0
12 TraesCS1B01G443300 chr1D 90.909 88 5 1 71 158 476873519 476873435 1.050000e-21 115.0
13 TraesCS1B01G443300 chr1D 94.231 52 3 0 3749 3800 476868539 476868488 3.850000e-11 80.5
14 TraesCS1B01G443300 chr1A 86.033 1568 106 53 404 1932 573033938 573032445 0.000000e+00 1578.0
15 TraesCS1B01G443300 chr1A 90.871 964 65 13 2848 3800 573031079 573030128 0.000000e+00 1271.0
16 TraesCS1B01G443300 chr1A 92.778 720 47 2 3086 3800 572881257 572880538 0.000000e+00 1037.0
17 TraesCS1B01G443300 chr1A 92.012 651 38 2 914 1564 572892615 572893251 0.000000e+00 902.0
18 TraesCS1B01G443300 chr1A 89.756 410 25 6 2687 3086 572886073 572885671 4.140000e-140 508.0
19 TraesCS1B01G443300 chr1A 79.661 472 51 25 369 807 572893896 572893437 9.750000e-77 298.0
20 TraesCS1B01G443300 chr1A 78.054 483 99 5 3047 3524 572997696 572997216 9.750000e-77 298.0
21 TraesCS1B01G443300 chr1A 75.902 610 111 21 1035 1638 461523905 461523326 3.530000e-71 279.0
22 TraesCS1B01G443300 chr1A 95.625 160 6 1 2691 2850 573031474 573031316 5.950000e-64 255.0
23 TraesCS1B01G443300 chr1A 84.404 218 26 4 2690 2907 572887522 572887313 1.690000e-49 207.0
24 TraesCS1B01G443300 chr1A 95.402 87 4 0 71 157 573034227 573034141 6.250000e-29 139.0
25 TraesCS1B01G443300 chr6B 87.752 596 39 24 3847 4421 607499227 607498645 0.000000e+00 665.0
26 TraesCS1B01G443300 chr6B 83.902 733 79 34 3847 4554 310523893 310524611 0.000000e+00 664.0
27 TraesCS1B01G443300 chr6B 83.921 709 73 36 3847 4530 310516013 310516705 1.410000e-179 640.0
28 TraesCS1B01G443300 chr6B 87.500 576 41 27 3847 4400 628871849 628871283 1.820000e-178 636.0
29 TraesCS1B01G443300 chr6B 98.266 173 3 0 159 331 19921085 19921257 2.100000e-78 303.0
30 TraesCS1B01G443300 chr6B 94.709 189 8 1 145 331 213152365 213152553 4.540000e-75 292.0
31 TraesCS1B01G443300 chr2B 90.927 496 29 11 3847 4333 17056527 17057015 0.000000e+00 652.0
32 TraesCS1B01G443300 chr2B 98.266 173 3 0 159 331 377538826 377538998 2.100000e-78 303.0
33 TraesCS1B01G443300 chr2B 95.652 184 8 0 148 331 184781753 184781936 3.510000e-76 296.0
34 TraesCS1B01G443300 chr2B 95.187 187 7 2 147 331 385773167 385772981 1.260000e-75 294.0
35 TraesCS1B01G443300 chr5B 90.180 499 34 14 3847 4334 198905030 198905524 1.820000e-178 636.0
36 TraesCS1B01G443300 chr5B 86.903 565 51 20 3850 4399 172270287 172269731 3.070000e-171 612.0
37 TraesCS1B01G443300 chr5B 93.510 339 19 2 4300 4636 225469699 225470036 6.920000e-138 501.0
38 TraesCS1B01G443300 chr5B 98.266 173 3 0 159 331 40414657 40414829 2.100000e-78 303.0
39 TraesCS1B01G443300 chr5B 93.464 153 9 1 4484 4636 225477896 225478047 4.670000e-55 226.0
40 TraesCS1B01G443300 chr7B 93.805 339 16 3 4299 4636 470819773 470819439 5.350000e-139 505.0
41 TraesCS1B01G443300 chr7B 93.215 339 21 2 4299 4636 118060583 118060246 8.960000e-137 497.0
42 TraesCS1B01G443300 chr7B 92.248 258 19 1 4299 4555 471599937 471600194 9.480000e-97 364.0
43 TraesCS1B01G443300 chr7B 82.716 162 19 8 4480 4636 267745675 267745518 8.090000e-28 135.0
44 TraesCS1B01G443300 chr4B 89.297 327 28 5 4299 4624 80458075 80458395 2.010000e-108 403.0
45 TraesCS1B01G443300 chr4B 90.625 288 24 3 4299 4585 80450170 80450455 3.390000e-101 379.0
46 TraesCS1B01G443300 chr4B 98.864 176 2 0 156 331 667396894 667396719 9.680000e-82 315.0
47 TraesCS1B01G443300 chr4B 98.857 175 2 0 157 331 644376459 644376285 3.480000e-81 313.0
48 TraesCS1B01G443300 chr4B 87.805 82 6 4 3786 3867 277794076 277794153 4.940000e-15 93.5
49 TraesCS1B01G443300 chr4A 95.161 186 9 0 158 343 662621170 662620985 1.260000e-75 294.0
50 TraesCS1B01G443300 chr3D 84.000 125 18 2 1368 1491 326120754 326120631 8.150000e-23 119.0
51 TraesCS1B01G443300 chr2A 90.667 75 5 2 3793 3867 539496967 539496895 1.060000e-16 99.0
52 TraesCS1B01G443300 chr2A 88.235 68 6 2 3800 3867 366578656 366578721 3.850000e-11 80.5
53 TraesCS1B01G443300 chr3A 92.537 67 3 2 3799 3865 252057381 252057317 1.370000e-15 95.3
54 TraesCS1B01G443300 chr3A 91.176 68 4 2 3800 3867 300914310 300914375 1.780000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G443300 chr1B 664316840 664321475 4635 False 8562.000 8562 100.00000 1 4636 1 chr1B.!!$F3 4635
1 TraesCS1B01G443300 chr1B 664330193 664331029 836 False 1334.000 1334 95.46500 3801 4636 1 chr1B.!!$F4 835
2 TraesCS1B01G443300 chr1B 617454361 617454868 507 False 612.000 612 88.80300 3852 4354 1 chr1B.!!$F2 502
3 TraesCS1B01G443300 chr1B 484464524 484465103 579 True 307.000 307 76.68300 1035 1638 1 chr1B.!!$R2 603
4 TraesCS1B01G443300 chr1B 484692149 484692731 582 True 285.000 285 76.02000 1035 1641 1 chr1B.!!$R3 606
5 TraesCS1B01G443300 chr1D 476868488 476873519 5031 True 834.125 1587 91.70925 71 3800 4 chr1D.!!$R3 3729
6 TraesCS1B01G443300 chr1D 362131863 362132445 582 True 296.000 296 76.34600 1035 1641 1 chr1D.!!$R2 606
7 TraesCS1B01G443300 chr1D 362012506 362013085 579 True 279.000 279 75.94100 1035 1638 1 chr1D.!!$R1 603
8 TraesCS1B01G443300 chr1A 572880538 572881257 719 True 1037.000 1037 92.77800 3086 3800 1 chr1A.!!$R2 714
9 TraesCS1B01G443300 chr1A 572892615 572893251 636 False 902.000 902 92.01200 914 1564 1 chr1A.!!$F1 650
10 TraesCS1B01G443300 chr1A 573030128 573034227 4099 True 810.750 1578 91.98275 71 3800 4 chr1A.!!$R6 3729
11 TraesCS1B01G443300 chr1A 572885671 572887522 1851 True 357.500 508 87.08000 2687 3086 2 chr1A.!!$R5 399
12 TraesCS1B01G443300 chr1A 461523326 461523905 579 True 279.000 279 75.90200 1035 1638 1 chr1A.!!$R1 603
13 TraesCS1B01G443300 chr6B 607498645 607499227 582 True 665.000 665 87.75200 3847 4421 1 chr6B.!!$R1 574
14 TraesCS1B01G443300 chr6B 310523893 310524611 718 False 664.000 664 83.90200 3847 4554 1 chr6B.!!$F4 707
15 TraesCS1B01G443300 chr6B 310516013 310516705 692 False 640.000 640 83.92100 3847 4530 1 chr6B.!!$F3 683
16 TraesCS1B01G443300 chr6B 628871283 628871849 566 True 636.000 636 87.50000 3847 4400 1 chr6B.!!$R2 553
17 TraesCS1B01G443300 chr5B 172269731 172270287 556 True 612.000 612 86.90300 3850 4399 1 chr5B.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 410 0.034670 ACTGCATCTTCCTTCAGGGC 60.035 55.0 0.0 0.0 35.41 5.19 F
803 831 0.109597 GGCATCACAAAGCCGAAGTG 60.110 55.0 0.0 0.0 41.70 3.16 F
1683 1744 0.319555 TTTGCTGGAAGAGACGACCG 60.320 55.0 0.0 0.0 34.07 4.79 F
2338 2919 0.101040 CGCGGACAAATACGGGTCTA 59.899 55.0 0.0 0.0 40.17 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1744 0.025513 CGTATGCTTGCTTGACTCGC 59.974 55.0 0.00 0.00 0.00 5.03 R
2319 2900 0.101040 TAGACCCGTATTTGTCCGCG 59.899 55.0 0.00 0.00 31.76 6.46 R
3470 4488 0.178992 CCACCTCAAGCTTGAACCCA 60.179 55.0 28.16 7.58 36.64 4.51 R
3647 4665 0.396001 TGGCATGTGGCAGCACATAT 60.396 50.0 8.08 0.09 46.12 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.576078 TCCACAAATATTCGAGGGCAT 57.424 42.857 0.00 0.00 0.00 4.40
21 22 3.897239 TCCACAAATATTCGAGGGCATT 58.103 40.909 0.00 0.00 0.00 3.56
22 23 3.882888 TCCACAAATATTCGAGGGCATTC 59.117 43.478 0.00 0.00 0.00 2.67
23 24 3.303990 CCACAAATATTCGAGGGCATTCG 60.304 47.826 4.50 4.50 41.79 3.34
24 25 3.312421 CACAAATATTCGAGGGCATTCGT 59.688 43.478 9.87 0.00 41.22 3.85
25 26 4.509970 CACAAATATTCGAGGGCATTCGTA 59.490 41.667 9.87 2.15 41.22 3.43
26 27 5.007234 CACAAATATTCGAGGGCATTCGTAA 59.993 40.000 9.87 4.87 41.22 3.18
27 28 5.763204 ACAAATATTCGAGGGCATTCGTAAT 59.237 36.000 9.87 10.25 41.22 1.89
28 29 6.073222 ACAAATATTCGAGGGCATTCGTAATC 60.073 38.462 9.87 0.00 41.22 1.75
29 30 3.753294 ATTCGAGGGCATTCGTAATCT 57.247 42.857 9.87 0.00 41.22 2.40
30 31 2.509052 TCGAGGGCATTCGTAATCTG 57.491 50.000 9.87 0.00 41.22 2.90
31 32 0.861837 CGAGGGCATTCGTAATCTGC 59.138 55.000 2.89 0.00 35.91 4.26
32 33 0.861837 GAGGGCATTCGTAATCTGCG 59.138 55.000 0.00 0.00 36.76 5.18
33 34 0.178068 AGGGCATTCGTAATCTGCGT 59.822 50.000 0.00 0.00 36.76 5.24
34 35 1.014352 GGGCATTCGTAATCTGCGTT 58.986 50.000 0.00 0.00 36.76 4.84
35 36 1.268032 GGGCATTCGTAATCTGCGTTG 60.268 52.381 0.00 0.00 36.76 4.10
36 37 1.268032 GGCATTCGTAATCTGCGTTGG 60.268 52.381 0.00 0.00 36.76 3.77
37 38 1.663643 GCATTCGTAATCTGCGTTGGA 59.336 47.619 0.00 0.00 0.00 3.53
38 39 2.285834 GCATTCGTAATCTGCGTTGGAG 60.286 50.000 0.00 0.00 0.00 3.86
39 40 3.186909 CATTCGTAATCTGCGTTGGAGA 58.813 45.455 0.00 0.00 0.00 3.71
40 41 3.520290 TTCGTAATCTGCGTTGGAGAT 57.480 42.857 0.00 0.00 0.00 2.75
41 42 2.809446 TCGTAATCTGCGTTGGAGATG 58.191 47.619 1.44 0.00 30.30 2.90
42 43 1.258982 CGTAATCTGCGTTGGAGATGC 59.741 52.381 1.44 0.00 40.83 3.91
43 44 1.599542 GTAATCTGCGTTGGAGATGCC 59.400 52.381 1.44 0.00 39.64 4.40
44 45 0.254178 AATCTGCGTTGGAGATGCCT 59.746 50.000 1.44 0.00 39.64 4.75
45 46 0.463295 ATCTGCGTTGGAGATGCCTG 60.463 55.000 0.00 0.00 39.64 4.85
46 47 2.046023 TGCGTTGGAGATGCCTGG 60.046 61.111 0.00 0.00 39.64 4.45
48 49 2.671070 CGTTGGAGATGCCTGGGT 59.329 61.111 0.00 0.00 37.63 4.51
51 52 1.541233 CGTTGGAGATGCCTGGGTATC 60.541 57.143 9.23 9.23 37.47 2.24
53 54 2.972713 GTTGGAGATGCCTGGGTATCTA 59.027 50.000 17.72 3.70 45.20 1.98
54 55 2.894731 TGGAGATGCCTGGGTATCTAG 58.105 52.381 17.72 0.00 45.20 2.43
55 56 2.183679 GGAGATGCCTGGGTATCTAGG 58.816 57.143 17.72 0.00 45.20 3.02
57 58 1.203364 AGATGCCTGGGTATCTAGGGG 60.203 57.143 16.55 0.00 43.82 4.79
58 59 0.842467 ATGCCTGGGTATCTAGGGGC 60.842 60.000 7.61 0.00 41.43 5.80
60 61 1.152312 CCTGGGTATCTAGGGGCGT 60.152 63.158 0.00 0.00 37.92 5.68
61 62 1.186267 CCTGGGTATCTAGGGGCGTC 61.186 65.000 0.00 0.00 37.92 5.19
62 63 1.152398 TGGGTATCTAGGGGCGTCC 60.152 63.158 0.00 0.00 0.00 4.79
63 64 2.273912 GGGTATCTAGGGGCGTCCG 61.274 68.421 0.00 0.00 41.52 4.79
64 65 1.530183 GGTATCTAGGGGCGTCCGT 60.530 63.158 6.47 6.47 41.52 4.69
66 67 0.749049 GTATCTAGGGGCGTCCGTTT 59.251 55.000 6.56 0.00 41.52 3.60
67 68 0.748450 TATCTAGGGGCGTCCGTTTG 59.252 55.000 6.56 0.37 41.52 2.93
68 69 0.974010 ATCTAGGGGCGTCCGTTTGA 60.974 55.000 6.56 6.59 41.52 2.69
69 70 0.974010 TCTAGGGGCGTCCGTTTGAT 60.974 55.000 6.56 0.00 41.52 2.57
72 73 0.544697 AGGGGCGTCCGTTTGATAAT 59.455 50.000 0.00 0.00 41.52 1.28
73 74 0.942252 GGGGCGTCCGTTTGATAATC 59.058 55.000 0.00 0.00 0.00 1.75
74 75 0.942252 GGGCGTCCGTTTGATAATCC 59.058 55.000 0.00 0.00 0.00 3.01
76 77 1.597663 GGCGTCCGTTTGATAATCCTG 59.402 52.381 0.00 0.00 0.00 3.86
159 160 8.568676 TCCTCCATACGTTCATTTAAATTTCA 57.431 30.769 0.00 0.00 0.00 2.69
160 161 8.673711 TCCTCCATACGTTCATTTAAATTTCAG 58.326 33.333 0.00 0.00 0.00 3.02
162 163 9.840427 CTCCATACGTTCATTTAAATTTCAGTT 57.160 29.630 0.00 0.00 0.00 3.16
168 169 9.522804 ACGTTCATTTAAATTTCAGTTTTGCTA 57.477 25.926 0.00 0.00 0.00 3.49
178 179 7.992754 ATTTCAGTTTTGCTAGAACTCATCT 57.007 32.000 0.00 0.00 42.48 2.90
179 180 7.426929 TTTCAGTTTTGCTAGAACTCATCTC 57.573 36.000 0.00 0.00 39.71 2.75
180 181 5.164233 TCAGTTTTGCTAGAACTCATCTCG 58.836 41.667 0.00 0.00 39.71 4.04
184 185 5.582689 TTTGCTAGAACTCATCTCGATGA 57.417 39.130 9.09 9.09 44.83 2.92
199 200 9.029368 TCATCTCGATGAGATATAATTTGGTCT 57.971 33.333 8.86 0.00 46.25 3.85
200 201 9.299963 CATCTCGATGAGATATAATTTGGTCTC 57.700 37.037 8.86 6.68 46.25 3.36
216 217 6.932356 TTGGTCTCATTCATCTTTCATAGC 57.068 37.500 0.00 0.00 0.00 2.97
217 218 5.371526 TGGTCTCATTCATCTTTCATAGCC 58.628 41.667 0.00 0.00 0.00 3.93
218 219 5.104402 TGGTCTCATTCATCTTTCATAGCCA 60.104 40.000 0.00 0.00 0.00 4.75
219 220 6.002704 GGTCTCATTCATCTTTCATAGCCAT 58.997 40.000 0.00 0.00 0.00 4.40
221 222 7.361127 GTCTCATTCATCTTTCATAGCCATTG 58.639 38.462 0.00 0.00 0.00 2.82
223 224 6.367161 TCATTCATCTTTCATAGCCATTGGA 58.633 36.000 6.95 0.00 0.00 3.53
224 225 7.008332 TCATTCATCTTTCATAGCCATTGGAT 58.992 34.615 6.95 1.78 0.00 3.41
225 226 6.644248 TTCATCTTTCATAGCCATTGGATG 57.356 37.500 6.95 2.32 0.00 3.51
227 228 5.533528 TCATCTTTCATAGCCATTGGATGTG 59.466 40.000 11.10 11.10 31.56 3.21
229 230 5.698104 TCTTTCATAGCCATTGGATGTGAT 58.302 37.500 19.25 0.00 38.85 3.06
232 233 3.154710 CATAGCCATTGGATGTGATGCT 58.845 45.455 11.86 0.00 31.97 3.79
235 236 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
236 237 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
237 238 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
239 240 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
242 243 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
244 245 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
245 246 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
246 247 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
247 248 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
248 249 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
249 250 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
250 251 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
251 252 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
253 254 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
254 255 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
255 256 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
257 258 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
258 259 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
260 261 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
261 262 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
265 266 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
266 267 0.973632 TGCTGACGTGGGTTGTATCT 59.026 50.000 0.00 0.00 0.00 1.98
274 275 3.323979 ACGTGGGTTGTATCTCTTCTTGT 59.676 43.478 0.00 0.00 0.00 3.16
276 277 4.755123 CGTGGGTTGTATCTCTTCTTGTTT 59.245 41.667 0.00 0.00 0.00 2.83
277 278 5.238650 CGTGGGTTGTATCTCTTCTTGTTTT 59.761 40.000 0.00 0.00 0.00 2.43
278 279 6.565999 CGTGGGTTGTATCTCTTCTTGTTTTC 60.566 42.308 0.00 0.00 0.00 2.29
282 283 7.862873 GGGTTGTATCTCTTCTTGTTTTCAAAG 59.137 37.037 0.00 0.00 39.47 2.77
283 284 8.406297 GGTTGTATCTCTTCTTGTTTTCAAAGT 58.594 33.333 0.00 0.00 39.47 2.66
284 285 9.226345 GTTGTATCTCTTCTTGTTTTCAAAGTG 57.774 33.333 0.00 0.00 39.47 3.16
285 286 8.731275 TGTATCTCTTCTTGTTTTCAAAGTGA 57.269 30.769 0.00 0.00 39.47 3.41
286 287 9.173021 TGTATCTCTTCTTGTTTTCAAAGTGAA 57.827 29.630 0.00 0.00 39.47 3.18
290 291 8.400947 TCTCTTCTTGTTTTCAAAGTGAATGAG 58.599 33.333 0.00 0.00 39.47 2.90
291 292 8.279970 TCTTCTTGTTTTCAAAGTGAATGAGA 57.720 30.769 0.00 0.00 39.47 3.27
292 293 8.184192 TCTTCTTGTTTTCAAAGTGAATGAGAC 58.816 33.333 0.00 0.00 39.47 3.36
293 294 6.795399 TCTTGTTTTCAAAGTGAATGAGACC 58.205 36.000 0.00 0.00 39.47 3.85
296 297 6.929625 TGTTTTCAAAGTGAATGAGACCAAA 58.070 32.000 0.00 0.00 36.11 3.28
297 298 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
298 299 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
299 300 9.528018 GTTTTCAAAGTGAATGAGACCAAATTA 57.472 29.630 0.00 0.00 36.11 1.40
329 330 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
330 331 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
333 334 2.996631 TGAGTTCTAGGTACTCCCGAC 58.003 52.381 17.72 1.24 41.02 4.79
352 353 2.826738 ACAACGGCGGCACAACTT 60.827 55.556 13.24 0.00 0.00 2.66
356 357 1.303091 AACGGCGGCACAACTTATCC 61.303 55.000 13.24 0.00 0.00 2.59
363 364 2.031683 CGGCACAACTTATCCCGATTTC 59.968 50.000 0.00 0.00 41.34 2.17
367 368 4.261801 CACAACTTATCCCGATTTCACCT 58.738 43.478 0.00 0.00 0.00 4.00
375 398 2.158957 TCCCGATTTCACCTACTGCATC 60.159 50.000 0.00 0.00 0.00 3.91
382 405 3.895232 TCACCTACTGCATCTTCCTTC 57.105 47.619 0.00 0.00 0.00 3.46
383 406 3.173151 TCACCTACTGCATCTTCCTTCA 58.827 45.455 0.00 0.00 0.00 3.02
385 408 2.503356 ACCTACTGCATCTTCCTTCAGG 59.497 50.000 0.00 0.00 0.00 3.86
386 409 2.158842 CCTACTGCATCTTCCTTCAGGG 60.159 54.545 0.00 0.00 35.41 4.45
387 410 0.034670 ACTGCATCTTCCTTCAGGGC 60.035 55.000 0.00 0.00 35.41 5.19
388 411 1.078214 TGCATCTTCCTTCAGGGCG 60.078 57.895 0.00 0.00 35.41 6.13
390 413 1.604378 CATCTTCCTTCAGGGCGGT 59.396 57.895 0.00 0.00 35.41 5.68
391 414 0.830648 CATCTTCCTTCAGGGCGGTA 59.169 55.000 0.00 0.00 35.41 4.02
392 415 0.831307 ATCTTCCTTCAGGGCGGTAC 59.169 55.000 0.00 0.00 35.41 3.34
460 487 6.128172 ACTGTCGTTCTTGAAATTGATGGATC 60.128 38.462 0.00 0.00 0.00 3.36
461 488 5.704978 TGTCGTTCTTGAAATTGATGGATCA 59.295 36.000 0.00 0.00 34.44 2.92
462 489 6.375174 TGTCGTTCTTGAAATTGATGGATCAT 59.625 34.615 0.00 0.00 36.56 2.45
463 490 6.690098 GTCGTTCTTGAAATTGATGGATCATG 59.310 38.462 0.00 0.00 36.56 3.07
464 491 5.975344 CGTTCTTGAAATTGATGGATCATGG 59.025 40.000 0.00 0.00 36.56 3.66
465 492 6.183360 CGTTCTTGAAATTGATGGATCATGGA 60.183 38.462 0.00 0.00 36.56 3.41
466 493 7.469594 CGTTCTTGAAATTGATGGATCATGGAT 60.470 37.037 0.00 0.00 36.56 3.41
488 515 2.038557 GACCAACCTAGTTTCTCAGCCA 59.961 50.000 0.00 0.00 0.00 4.75
512 539 2.046892 CCAGTGACCCGCTTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
513 540 2.743718 CAGTGACCCGCTTCCTGT 59.256 61.111 0.00 0.00 0.00 4.00
550 578 5.025826 GCATTTAATTTTCCTCCACGTACG 58.974 41.667 15.01 15.01 0.00 3.67
575 603 1.201954 CGGCACATGAAGAACACGATG 60.202 52.381 0.00 0.00 0.00 3.84
595 623 6.989169 ACGATGAAATAGTAGGAGTACGTACT 59.011 38.462 27.71 27.71 45.54 2.73
596 624 7.170658 ACGATGAAATAGTAGGAGTACGTACTC 59.829 40.741 36.84 36.84 43.58 2.59
617 645 0.320771 ATGCAAGGTCGTGGTCAGAC 60.321 55.000 0.00 0.00 37.86 3.51
685 713 1.750572 GCTCGCACGCAGATGAAGAG 61.751 60.000 0.00 0.00 0.00 2.85
758 786 3.182972 CGTTGCAAAGCTGGATTTTTCAG 59.817 43.478 0.00 0.00 35.49 3.02
762 790 5.232463 TGCAAAGCTGGATTTTTCAGAATC 58.768 37.500 0.00 0.00 35.71 2.52
763 791 5.221481 TGCAAAGCTGGATTTTTCAGAATCA 60.221 36.000 0.00 0.00 37.69 2.57
764 792 5.119743 GCAAAGCTGGATTTTTCAGAATCAC 59.880 40.000 0.00 0.00 37.69 3.06
769 797 6.209986 AGCTGGATTTTTCAGAATCACAATGA 59.790 34.615 0.00 0.00 37.69 2.57
771 799 7.010183 GCTGGATTTTTCAGAATCACAATGATG 59.990 37.037 0.00 0.00 37.69 3.07
772 800 6.814644 TGGATTTTTCAGAATCACAATGATGC 59.185 34.615 0.00 0.00 37.15 3.91
773 801 6.257193 GGATTTTTCAGAATCACAATGATGCC 59.743 38.462 0.00 0.00 37.15 4.40
774 802 5.725325 TTTTCAGAATCACAATGATGCCA 57.275 34.783 0.00 0.00 37.15 4.92
775 803 4.707030 TTCAGAATCACAATGATGCCAC 57.293 40.909 0.00 0.00 37.15 5.01
776 804 3.959293 TCAGAATCACAATGATGCCACT 58.041 40.909 0.00 0.00 37.15 4.00
777 805 5.101648 TCAGAATCACAATGATGCCACTA 57.898 39.130 0.00 0.00 37.15 2.74
780 808 4.753610 AGAATCACAATGATGCCACTATCG 59.246 41.667 0.00 0.00 37.15 2.92
785 813 3.879295 ACAATGATGCCACTATCGAAAGG 59.121 43.478 0.00 0.00 0.00 3.11
795 823 4.201851 CCACTATCGAAAGGCATCACAAAG 60.202 45.833 0.00 0.00 0.00 2.77
802 830 2.257353 GGCATCACAAAGCCGAAGT 58.743 52.632 0.00 0.00 41.70 3.01
803 831 0.109597 GGCATCACAAAGCCGAAGTG 60.110 55.000 0.00 0.00 41.70 3.16
804 832 0.730494 GCATCACAAAGCCGAAGTGC 60.730 55.000 0.00 0.00 33.44 4.40
805 833 0.592637 CATCACAAAGCCGAAGTGCA 59.407 50.000 0.00 0.00 33.44 4.57
807 835 0.592637 TCACAAAGCCGAAGTGCATG 59.407 50.000 0.00 0.00 33.44 4.06
808 836 1.005294 CACAAAGCCGAAGTGCATGC 61.005 55.000 11.82 11.82 0.00 4.06
809 837 1.174712 ACAAAGCCGAAGTGCATGCT 61.175 50.000 20.33 0.00 35.08 3.79
850 878 2.795329 ACCAACACACCCAAGATGATC 58.205 47.619 0.00 0.00 0.00 2.92
867 898 2.102252 TGATCCAAACAAGCCAAACACC 59.898 45.455 0.00 0.00 0.00 4.16
903 934 5.585047 CCAGCAAGTAGTAATACTTCCAACC 59.415 44.000 12.46 0.68 38.14 3.77
904 935 6.170506 CAGCAAGTAGTAATACTTCCAACCA 58.829 40.000 12.46 0.00 38.14 3.67
905 936 6.653320 CAGCAAGTAGTAATACTTCCAACCAA 59.347 38.462 12.46 0.00 38.14 3.67
906 937 7.174253 CAGCAAGTAGTAATACTTCCAACCAAA 59.826 37.037 12.46 0.00 38.14 3.28
907 938 7.174426 AGCAAGTAGTAATACTTCCAACCAAAC 59.826 37.037 12.46 0.00 38.14 2.93
908 939 7.174426 GCAAGTAGTAATACTTCCAACCAAACT 59.826 37.037 12.46 0.00 38.14 2.66
909 940 8.718734 CAAGTAGTAATACTTCCAACCAAACTC 58.281 37.037 12.46 0.00 38.14 3.01
910 941 7.095270 AGTAGTAATACTTCCAACCAAACTCG 58.905 38.462 0.00 0.00 0.00 4.18
912 943 6.293698 AGTAATACTTCCAACCAAACTCGTT 58.706 36.000 0.00 0.00 0.00 3.85
948 979 2.704464 AGGTTAAGACGCCCATTACC 57.296 50.000 0.00 0.00 0.00 2.85
949 980 1.134610 AGGTTAAGACGCCCATTACCG 60.135 52.381 0.00 0.00 0.00 4.02
1149 1199 2.753043 GAGGCCACCTACGACGGA 60.753 66.667 5.01 0.00 31.76 4.69
1266 1319 2.738643 CGCCGTCACCAAGTTCATCTAT 60.739 50.000 0.00 0.00 0.00 1.98
1273 1326 3.308053 CACCAAGTTCATCTATGCGACAG 59.692 47.826 0.00 0.00 0.00 3.51
1338 1391 1.446099 CTTCTTCGTGCTGCCGCTA 60.446 57.895 0.70 0.00 36.97 4.26
1536 1589 4.756458 GTGCTCGGCTCAGCTGCT 62.756 66.667 9.47 0.00 40.39 4.24
1548 1601 2.799017 TCAGCTGCTGGTGATTTTGAT 58.201 42.857 27.79 0.00 44.58 2.57
1658 1711 4.212636 GGTGAGCGTTACTTGCTTTTCTAA 59.787 41.667 0.00 0.00 44.18 2.10
1683 1744 0.319555 TTTGCTGGAAGAGACGACCG 60.320 55.000 0.00 0.00 34.07 4.79
1700 1761 1.083806 CCGCGAGTCAAGCAAGCATA 61.084 55.000 8.23 0.00 34.19 3.14
1706 1767 2.086869 AGTCAAGCAAGCATACGCAAT 58.913 42.857 0.00 0.00 42.27 3.56
1708 1769 3.689161 AGTCAAGCAAGCATACGCAATTA 59.311 39.130 0.00 0.00 42.27 1.40
1729 1790 9.687210 CAATTATGCATGCATGTATAGAAAAGT 57.313 29.630 37.43 20.19 36.85 2.66
1760 1928 4.811969 ATGTACAAATCGTCCAGTGGTA 57.188 40.909 9.54 0.00 0.00 3.25
1779 1947 5.758784 GTGGTATTGTATGCTAGAACCTTCC 59.241 44.000 0.00 0.00 0.00 3.46
1818 2065 9.914131 AAAGCTCATTTTTGTAAAGAATACTCC 57.086 29.630 0.00 0.00 0.00 3.85
1839 2086 5.627172 TCCGAAATGATAACTCGCAAAAAG 58.373 37.500 0.00 0.00 0.00 2.27
1851 2098 4.514066 ACTCGCAAAAAGGTGGTACTAAAG 59.486 41.667 0.00 0.00 0.00 1.85
1874 2121 9.914834 AAAGTATAACTATTTATGTGAAGGCCA 57.085 29.630 5.01 0.00 0.00 5.36
1903 2151 5.551233 TGAGCAGTTATTATAGCATCCACC 58.449 41.667 0.00 0.00 0.00 4.61
1911 2159 1.734655 ATAGCATCCACCACCCTAGG 58.265 55.000 0.06 0.06 0.00 3.02
1919 2167 1.573108 CACCACCCTAGGACTCACAT 58.427 55.000 11.48 0.00 0.00 3.21
1920 2168 1.482593 CACCACCCTAGGACTCACATC 59.517 57.143 11.48 0.00 0.00 3.06
1922 2170 2.035632 CCACCCTAGGACTCACATCTC 58.964 57.143 11.48 0.00 0.00 2.75
1948 2470 5.449725 GGCCCTAACGTCCGTCTATATATTC 60.450 48.000 0.00 0.00 0.00 1.75
1953 2475 8.939929 CCTAACGTCCGTCTATATATTCACTTA 58.060 37.037 0.00 0.00 0.00 2.24
1957 2479 9.060347 ACGTCCGTCTATATATTCACTTAAAGA 57.940 33.333 0.00 0.00 0.00 2.52
1991 2515 2.799126 AATACGGCAATGACCTTCCA 57.201 45.000 0.00 0.00 0.00 3.53
1992 2516 2.799126 ATACGGCAATGACCTTCCAA 57.201 45.000 0.00 0.00 0.00 3.53
2015 2572 8.819974 CCAACAAATATCTAACATGGCAAAATC 58.180 33.333 0.00 0.00 0.00 2.17
2036 2593 5.066968 TCAACCTTCCGCCAAATAAAATC 57.933 39.130 0.00 0.00 0.00 2.17
2040 2597 4.526650 ACCTTCCGCCAAATAAAATCAACT 59.473 37.500 0.00 0.00 0.00 3.16
2043 2600 6.090763 CCTTCCGCCAAATAAAATCAACTTTC 59.909 38.462 0.00 0.00 0.00 2.62
2044 2601 5.474825 TCCGCCAAATAAAATCAACTTTCC 58.525 37.500 0.00 0.00 0.00 3.13
2045 2602 4.326009 CCGCCAAATAAAATCAACTTTCCG 59.674 41.667 0.00 0.00 0.00 4.30
2046 2603 4.201580 CGCCAAATAAAATCAACTTTCCGC 60.202 41.667 0.00 0.00 0.00 5.54
2047 2604 4.092821 GCCAAATAAAATCAACTTTCCGCC 59.907 41.667 0.00 0.00 0.00 6.13
2048 2605 5.233988 CCAAATAAAATCAACTTTCCGCCA 58.766 37.500 0.00 0.00 0.00 5.69
2049 2606 5.698545 CCAAATAAAATCAACTTTCCGCCAA 59.301 36.000 0.00 0.00 0.00 4.52
2050 2607 6.371271 CCAAATAAAATCAACTTTCCGCCAAT 59.629 34.615 0.00 0.00 0.00 3.16
2051 2608 7.547370 CCAAATAAAATCAACTTTCCGCCAATA 59.453 33.333 0.00 0.00 0.00 1.90
2052 2609 9.097257 CAAATAAAATCAACTTTCCGCCAATAT 57.903 29.630 0.00 0.00 0.00 1.28
2053 2610 8.871686 AATAAAATCAACTTTCCGCCAATATC 57.128 30.769 0.00 0.00 0.00 1.63
2054 2611 6.530019 AAAATCAACTTTCCGCCAATATCT 57.470 33.333 0.00 0.00 0.00 1.98
2055 2612 7.639113 AAAATCAACTTTCCGCCAATATCTA 57.361 32.000 0.00 0.00 0.00 1.98
2056 2613 7.823745 AAATCAACTTTCCGCCAATATCTAT 57.176 32.000 0.00 0.00 0.00 1.98
2088 2646 6.031751 TCCCCAAATAAAATCAACTTTCCG 57.968 37.500 0.00 0.00 0.00 4.30
2095 2653 8.379902 CAAATAAAATCAACTTTCCGCCAATAC 58.620 33.333 0.00 0.00 0.00 1.89
2096 2654 4.450082 AAATCAACTTTCCGCCAATACC 57.550 40.909 0.00 0.00 0.00 2.73
2113 2671 5.128499 CCAATACCTAACATGGCCAAATCAA 59.872 40.000 10.96 0.00 0.00 2.57
2114 2672 6.351711 CCAATACCTAACATGGCCAAATCAAA 60.352 38.462 10.96 0.00 0.00 2.69
2119 2677 6.013466 ACCTAACATGGCCAAATCAAATTTCT 60.013 34.615 10.96 0.00 0.00 2.52
2132 2690 9.337091 CAAATCAAATTTCTGCCAAATGAAATC 57.663 29.630 0.00 0.00 40.64 2.17
2133 2691 8.624367 AATCAAATTTCTGCCAAATGAAATCA 57.376 26.923 0.00 0.00 40.64 2.57
2134 2692 8.624367 ATCAAATTTCTGCCAAATGAAATCAA 57.376 26.923 0.00 0.00 40.64 2.57
2135 2693 7.863666 TCAAATTTCTGCCAAATGAAATCAAC 58.136 30.769 0.00 0.00 40.64 3.18
2136 2694 7.716123 TCAAATTTCTGCCAAATGAAATCAACT 59.284 29.630 0.00 0.00 40.64 3.16
2137 2695 8.347035 CAAATTTCTGCCAAATGAAATCAACTT 58.653 29.630 0.00 0.00 40.64 2.66
2138 2696 8.454570 AATTTCTGCCAAATGAAATCAACTTT 57.545 26.923 0.00 0.00 40.64 2.66
2139 2697 7.481275 TTTCTGCCAAATGAAATCAACTTTC 57.519 32.000 0.00 0.00 43.05 2.62
2140 2698 6.409524 TCTGCCAAATGAAATCAACTTTCT 57.590 33.333 0.08 0.00 43.14 2.52
2141 2699 6.218019 TCTGCCAAATGAAATCAACTTTCTG 58.782 36.000 0.08 0.00 43.14 3.02
2142 2700 4.751098 TGCCAAATGAAATCAACTTTCTGC 59.249 37.500 0.08 0.00 43.14 4.26
2143 2701 4.152938 GCCAAATGAAATCAACTTTCTGCC 59.847 41.667 0.08 0.00 43.14 4.85
2144 2702 5.299148 CCAAATGAAATCAACTTTCTGCCA 58.701 37.500 0.08 0.00 43.14 4.92
2145 2703 5.759273 CCAAATGAAATCAACTTTCTGCCAA 59.241 36.000 0.08 0.00 43.14 4.52
2146 2704 6.260493 CCAAATGAAATCAACTTTCTGCCAAA 59.740 34.615 0.08 0.00 43.14 3.28
2147 2705 6.849588 AATGAAATCAACTTTCTGCCAAAC 57.150 33.333 0.08 0.00 43.14 2.93
2148 2706 4.692228 TGAAATCAACTTTCTGCCAAACC 58.308 39.130 0.08 0.00 43.14 3.27
2149 2707 3.751479 AATCAACTTTCTGCCAAACCC 57.249 42.857 0.00 0.00 0.00 4.11
2150 2708 1.028905 TCAACTTTCTGCCAAACCCG 58.971 50.000 0.00 0.00 0.00 5.28
2151 2709 0.744281 CAACTTTCTGCCAAACCCGT 59.256 50.000 0.00 0.00 0.00 5.28
2152 2710 1.029681 AACTTTCTGCCAAACCCGTC 58.970 50.000 0.00 0.00 0.00 4.79
2153 2711 0.822121 ACTTTCTGCCAAACCCGTCC 60.822 55.000 0.00 0.00 0.00 4.79
2154 2712 1.852067 CTTTCTGCCAAACCCGTCCG 61.852 60.000 0.00 0.00 0.00 4.79
2159 2717 2.907917 CCAAACCCGTCCGCCAAA 60.908 61.111 0.00 0.00 0.00 3.28
2160 2718 2.491022 CCAAACCCGTCCGCCAAAA 61.491 57.895 0.00 0.00 0.00 2.44
2161 2719 1.663173 CAAACCCGTCCGCCAAAAT 59.337 52.632 0.00 0.00 0.00 1.82
2162 2720 0.665972 CAAACCCGTCCGCCAAAATG 60.666 55.000 0.00 0.00 0.00 2.32
2163 2721 0.824182 AAACCCGTCCGCCAAAATGA 60.824 50.000 0.00 0.00 0.00 2.57
2164 2722 0.824182 AACCCGTCCGCCAAAATGAA 60.824 50.000 0.00 0.00 0.00 2.57
2165 2723 0.610785 ACCCGTCCGCCAAAATGAAT 60.611 50.000 0.00 0.00 0.00 2.57
2166 2724 0.530288 CCCGTCCGCCAAAATGAATT 59.470 50.000 0.00 0.00 0.00 2.17
2167 2725 1.469079 CCCGTCCGCCAAAATGAATTC 60.469 52.381 0.00 0.00 0.00 2.17
2172 2730 4.306600 GTCCGCCAAAATGAATTCAACTT 58.693 39.130 13.09 6.29 0.00 2.66
2180 2738 6.203338 CCAAAATGAATTCAACTTTCCACCAG 59.797 38.462 13.09 3.02 0.00 4.00
2183 2741 7.781324 AATGAATTCAACTTTCCACCAGTAT 57.219 32.000 13.09 0.00 0.00 2.12
2191 2749 8.141298 TCAACTTTCCACCAGTATCTAACATA 57.859 34.615 0.00 0.00 0.00 2.29
2198 2756 6.069905 TCCACCAGTATCTAACATAGCCAAAA 60.070 38.462 0.00 0.00 0.00 2.44
2202 2760 7.668052 ACCAGTATCTAACATAGCCAAAACAAA 59.332 33.333 0.00 0.00 0.00 2.83
2204 2762 7.968405 CAGTATCTAACATAGCCAAAACAAACC 59.032 37.037 0.00 0.00 0.00 3.27
2206 2764 6.969993 TCTAACATAGCCAAAACAAACCTT 57.030 33.333 0.00 0.00 0.00 3.50
2208 2766 7.206687 TCTAACATAGCCAAAACAAACCTTTG 58.793 34.615 0.00 0.00 43.62 2.77
2212 2770 2.409948 CCAAAACAAACCTTTGGCCA 57.590 45.000 0.00 0.00 44.64 5.36
2213 2771 2.716217 CCAAAACAAACCTTTGGCCAA 58.284 42.857 16.05 16.05 44.64 4.52
2214 2772 3.084786 CCAAAACAAACCTTTGGCCAAA 58.915 40.909 28.65 28.65 44.64 3.28
2215 2773 3.698539 CCAAAACAAACCTTTGGCCAAAT 59.301 39.130 30.46 14.97 44.64 2.32
2216 2774 4.439837 CCAAAACAAACCTTTGGCCAAATG 60.440 41.667 30.46 28.18 44.64 2.32
2217 2775 3.922171 AACAAACCTTTGGCCAAATGA 57.078 38.095 32.33 13.66 42.34 2.57
2218 2776 3.922171 ACAAACCTTTGGCCAAATGAA 57.078 38.095 32.33 13.30 42.34 2.57
2219 2777 4.227864 ACAAACCTTTGGCCAAATGAAA 57.772 36.364 32.33 12.94 42.34 2.69
2220 2778 4.790937 ACAAACCTTTGGCCAAATGAAAT 58.209 34.783 32.33 18.38 42.34 2.17
2221 2779 4.821260 ACAAACCTTTGGCCAAATGAAATC 59.179 37.500 32.33 0.00 42.34 2.17
2222 2780 4.703379 AACCTTTGGCCAAATGAAATCA 57.297 36.364 32.33 10.83 0.00 2.57
2223 2781 4.703379 ACCTTTGGCCAAATGAAATCAA 57.297 36.364 32.33 10.13 0.00 2.57
2224 2782 5.245584 ACCTTTGGCCAAATGAAATCAAT 57.754 34.783 32.33 11.51 0.00 2.57
2225 2783 5.247862 ACCTTTGGCCAAATGAAATCAATC 58.752 37.500 32.33 0.00 0.00 2.67
2226 2784 5.013391 ACCTTTGGCCAAATGAAATCAATCT 59.987 36.000 32.33 10.24 0.00 2.40
2227 2785 6.213195 ACCTTTGGCCAAATGAAATCAATCTA 59.787 34.615 32.33 8.33 0.00 1.98
2228 2786 7.092757 ACCTTTGGCCAAATGAAATCAATCTAT 60.093 33.333 32.33 9.16 0.00 1.98
2229 2787 7.440255 CCTTTGGCCAAATGAAATCAATCTATC 59.560 37.037 30.46 0.00 0.00 2.08
2242 2800 4.385825 TCAATCTATCGCCAAATGGGTAC 58.614 43.478 0.90 0.00 39.65 3.34
2243 2801 4.133820 CAATCTATCGCCAAATGGGTACA 58.866 43.478 0.90 0.00 39.65 2.90
2244 2802 4.640771 ATCTATCGCCAAATGGGTACAT 57.359 40.909 0.90 0.00 39.65 2.29
2247 2805 1.034838 TCGCCAAATGGGTACATGGC 61.035 55.000 12.91 12.91 40.79 4.40
2248 2806 1.822615 GCCAAATGGGTACATGGCC 59.177 57.895 12.24 0.00 39.20 5.36
2249 2807 0.975040 GCCAAATGGGTACATGGCCA 60.975 55.000 8.56 8.56 39.20 5.36
2250 2808 1.566211 CCAAATGGGTACATGGCCAA 58.434 50.000 10.96 0.00 37.40 4.52
2251 2809 1.481772 CCAAATGGGTACATGGCCAAG 59.518 52.381 10.96 8.43 37.40 3.61
2252 2810 1.481772 CAAATGGGTACATGGCCAAGG 59.518 52.381 10.96 8.08 37.40 3.61
2253 2811 0.687427 AATGGGTACATGGCCAAGGC 60.687 55.000 10.96 1.52 37.40 4.35
2268 2841 0.322546 AAGGCCGATGTCCAAACTCC 60.323 55.000 0.00 0.00 0.00 3.85
2275 2848 1.611491 GATGTCCAAACTCCCGCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
2280 2853 1.266989 CCAAACTCCCGCAAAACTCTC 59.733 52.381 0.00 0.00 0.00 3.20
2281 2854 1.946768 CAAACTCCCGCAAAACTCTCA 59.053 47.619 0.00 0.00 0.00 3.27
2282 2855 1.594331 AACTCCCGCAAAACTCTCAC 58.406 50.000 0.00 0.00 0.00 3.51
2294 2867 2.262423 ACTCTCACAGGTTTGCTTCC 57.738 50.000 0.00 0.00 0.00 3.46
2314 2895 2.182825 CGGAATTCGGACAAGTAGACG 58.817 52.381 7.20 0.00 34.75 4.18
2315 2896 2.159476 CGGAATTCGGACAAGTAGACGA 60.159 50.000 7.20 0.00 34.75 4.20
2319 2900 1.446907 TCGGACAAGTAGACGAGTCC 58.553 55.000 13.41 13.41 45.46 3.85
2320 2901 3.992636 GGACAAGTAGACGAGTCCG 57.007 57.895 9.72 0.00 40.89 4.79
2322 2903 0.520827 GACAAGTAGACGAGTCCGCG 60.521 60.000 0.00 0.00 39.95 6.46
2323 2904 1.226323 CAAGTAGACGAGTCCGCGG 60.226 63.158 22.12 22.12 39.95 6.46
2324 2905 1.376424 AAGTAGACGAGTCCGCGGA 60.376 57.895 27.28 27.28 39.95 5.54
2334 2915 2.169146 GTCCGCGGACAAATACGGG 61.169 63.158 44.88 8.87 45.65 5.28
2337 2918 1.153706 CGCGGACAAATACGGGTCT 60.154 57.895 0.00 0.00 40.17 3.85
2338 2919 0.101040 CGCGGACAAATACGGGTCTA 59.899 55.000 0.00 0.00 40.17 2.59
2339 2920 1.269413 CGCGGACAAATACGGGTCTAT 60.269 52.381 0.00 0.00 40.17 1.98
2341 2922 3.366679 CGCGGACAAATACGGGTCTATAT 60.367 47.826 0.00 0.00 40.17 0.86
2344 2925 4.927425 CGGACAAATACGGGTCTATATTGG 59.073 45.833 0.00 0.00 34.49 3.16
2349 2930 7.159372 ACAAATACGGGTCTATATTGGATGAC 58.841 38.462 0.00 0.00 0.00 3.06
2357 2938 6.645415 GGGTCTATATTGGATGACAAACTACG 59.355 42.308 0.00 0.00 43.46 3.51
2363 2945 4.594123 TGGATGACAAACTACGTCAGAA 57.406 40.909 0.00 0.00 45.99 3.02
2364 2946 5.147330 TGGATGACAAACTACGTCAGAAT 57.853 39.130 0.00 0.00 45.99 2.40
2366 2948 6.330278 TGGATGACAAACTACGTCAGAATAG 58.670 40.000 0.00 0.00 45.99 1.73
2368 2950 5.386958 TGACAAACTACGTCAGAATAGCT 57.613 39.130 0.00 0.00 38.45 3.32
2379 2961 1.207089 CAGAATAGCTTGGTCCGGACA 59.793 52.381 34.40 18.59 0.00 4.02
2384 2966 0.904865 AGCTTGGTCCGGACAGATGA 60.905 55.000 34.40 14.42 0.00 2.92
2388 2970 1.381327 GGTCCGGACAGATGAGGGA 60.381 63.158 34.40 0.00 0.00 4.20
2393 2975 1.406069 CCGGACAGATGAGGGAGTTTG 60.406 57.143 0.00 0.00 0.00 2.93
2394 2976 1.276421 CGGACAGATGAGGGAGTTTGT 59.724 52.381 0.00 0.00 0.00 2.83
2471 3219 7.398024 AGGATTTTGATATTTCTCTATCCCCG 58.602 38.462 0.00 0.00 0.00 5.73
2514 3262 6.874134 GCTACATAACTTTTCTCACCTCTTCA 59.126 38.462 0.00 0.00 0.00 3.02
2515 3263 7.550906 GCTACATAACTTTTCTCACCTCTTCAT 59.449 37.037 0.00 0.00 0.00 2.57
2517 3265 8.697507 ACATAACTTTTCTCACCTCTTCATTT 57.302 30.769 0.00 0.00 0.00 2.32
2518 3266 9.793259 ACATAACTTTTCTCACCTCTTCATTTA 57.207 29.630 0.00 0.00 0.00 1.40
2520 3268 6.809630 ACTTTTCTCACCTCTTCATTTAGC 57.190 37.500 0.00 0.00 0.00 3.09
2521 3269 6.299141 ACTTTTCTCACCTCTTCATTTAGCA 58.701 36.000 0.00 0.00 0.00 3.49
2522 3270 6.944862 ACTTTTCTCACCTCTTCATTTAGCAT 59.055 34.615 0.00 0.00 0.00 3.79
2523 3271 6.992063 TTTCTCACCTCTTCATTTAGCATC 57.008 37.500 0.00 0.00 0.00 3.91
2563 3326 6.981559 GGATGAAGGAGTAGAGTAACACATTC 59.018 42.308 0.00 0.00 33.33 2.67
2567 3330 6.342338 AGGAGTAGAGTAACACATTCGTTT 57.658 37.500 0.00 0.00 0.00 3.60
2572 3335 7.088905 AGTAGAGTAACACATTCGTTTAGTGG 58.911 38.462 0.00 0.00 37.58 4.00
2644 3407 9.379770 TGATTTAGTATTGATGAGGGTCAGATA 57.620 33.333 0.00 0.00 0.00 1.98
2651 3414 7.579940 ATTGATGAGGGTCAGATATATTGGT 57.420 36.000 0.00 0.00 0.00 3.67
2652 3415 8.685257 ATTGATGAGGGTCAGATATATTGGTA 57.315 34.615 0.00 0.00 0.00 3.25
2653 3416 7.724490 TGATGAGGGTCAGATATATTGGTAG 57.276 40.000 0.00 0.00 0.00 3.18
2654 3417 6.669591 TGATGAGGGTCAGATATATTGGTAGG 59.330 42.308 0.00 0.00 0.00 3.18
2655 3418 4.777896 TGAGGGTCAGATATATTGGTAGGC 59.222 45.833 0.00 0.00 0.00 3.93
2656 3419 4.763355 AGGGTCAGATATATTGGTAGGCA 58.237 43.478 0.00 0.00 0.00 4.75
2657 3420 4.780021 AGGGTCAGATATATTGGTAGGCAG 59.220 45.833 0.00 0.00 0.00 4.85
2658 3421 4.508662 GGTCAGATATATTGGTAGGCAGC 58.491 47.826 0.00 0.00 0.00 5.25
2659 3422 4.508662 GTCAGATATATTGGTAGGCAGCC 58.491 47.826 1.84 1.84 0.00 4.85
2661 3424 4.020218 TCAGATATATTGGTAGGCAGCCAC 60.020 45.833 15.80 9.80 35.46 5.01
2662 3425 3.909995 AGATATATTGGTAGGCAGCCACA 59.090 43.478 15.80 6.81 35.46 4.17
2663 3426 4.537688 AGATATATTGGTAGGCAGCCACAT 59.462 41.667 15.80 0.00 35.46 3.21
2664 3427 2.638480 TATTGGTAGGCAGCCACATC 57.362 50.000 15.80 1.18 35.46 3.06
2665 3428 0.921896 ATTGGTAGGCAGCCACATCT 59.078 50.000 15.80 0.00 35.46 2.90
2666 3429 1.578897 TTGGTAGGCAGCCACATCTA 58.421 50.000 15.80 0.00 35.46 1.98
2668 3431 1.209504 TGGTAGGCAGCCACATCTAAC 59.790 52.381 15.80 0.00 0.00 2.34
2669 3432 1.209504 GGTAGGCAGCCACATCTAACA 59.790 52.381 15.80 0.00 0.00 2.41
2670 3433 2.280628 GTAGGCAGCCACATCTAACAC 58.719 52.381 15.80 0.00 0.00 3.32
2672 3435 1.352352 AGGCAGCCACATCTAACACTT 59.648 47.619 15.80 0.00 0.00 3.16
2673 3436 2.162681 GGCAGCCACATCTAACACTTT 58.837 47.619 6.55 0.00 0.00 2.66
2674 3437 2.558359 GGCAGCCACATCTAACACTTTT 59.442 45.455 6.55 0.00 0.00 2.27
2675 3438 3.005791 GGCAGCCACATCTAACACTTTTT 59.994 43.478 6.55 0.00 0.00 1.94
2693 3458 2.093537 TTTTTGCGGGGTGCCACATC 62.094 55.000 0.00 0.00 45.60 3.06
2737 3502 6.841755 AGGTAGGTTTGCTATAGAAGAGATGT 59.158 38.462 3.21 0.00 0.00 3.06
2912 3923 0.953003 TACCGATCGACACACACACA 59.047 50.000 18.66 0.00 0.00 3.72
2913 3924 0.103390 ACCGATCGACACACACACAA 59.897 50.000 18.66 0.00 0.00 3.33
2914 3925 1.213491 CCGATCGACACACACACAAA 58.787 50.000 18.66 0.00 0.00 2.83
2915 3926 1.070843 CCGATCGACACACACACAAAC 60.071 52.381 18.66 0.00 0.00 2.93
2935 3946 0.248621 GAAAGCTGCGTGTGCTGTTT 60.249 50.000 0.00 0.00 43.38 2.83
3248 4266 0.315886 TAGGCGACGACAGCTTCAAA 59.684 50.000 2.19 0.00 34.52 2.69
3257 4275 1.541588 GACAGCTTCAAATCGGCCTTT 59.458 47.619 0.00 0.00 0.00 3.11
3329 4347 0.830444 TGCCTCTATACCCGCCGATT 60.830 55.000 0.00 0.00 0.00 3.34
3347 4365 4.460683 GGGTACGTGGATGCGGCA 62.461 66.667 4.58 4.58 35.98 5.69
3350 4368 2.030401 GTACGTGGATGCGGCAACA 61.030 57.895 6.82 6.71 35.98 3.33
3353 4371 3.058160 GTGGATGCGGCAACAGCT 61.058 61.111 6.82 0.00 37.09 4.24
3380 4398 3.936203 GTGGACACTGGCCGGTCA 61.936 66.667 16.42 9.26 35.74 4.02
3387 4405 3.379445 CTGGCCGGTCACCGTACT 61.379 66.667 16.87 0.00 46.80 2.73
3497 4515 2.579201 CTTGAGGTGGACCGCGAT 59.421 61.111 8.23 0.00 42.08 4.58
3647 4665 2.362397 GGAGACCTGATTGAGATGCGTA 59.638 50.000 0.00 0.00 0.00 4.42
3686 4704 3.181501 CCAATGCCACGTACAACTAATGG 60.182 47.826 0.00 0.00 0.00 3.16
3687 4705 2.843401 TGCCACGTACAACTAATGGT 57.157 45.000 0.00 0.00 32.71 3.55
3690 4708 3.267483 GCCACGTACAACTAATGGTGAT 58.733 45.455 0.00 0.00 32.71 3.06
3695 4713 5.522097 CACGTACAACTAATGGTGATATGCA 59.478 40.000 0.00 0.00 0.00 3.96
3890 6301 5.839517 TGAATTTGAAATGGGGGATGTTT 57.160 34.783 0.00 0.00 0.00 2.83
3916 6327 6.030727 ACCCTAGCATAAAAAGGAATCCAT 57.969 37.500 0.61 0.00 31.64 3.41
4034 6445 5.749620 GCACATTTTTGCATGACATTTTGA 58.250 33.333 0.00 0.00 42.49 2.69
4297 6727 0.397816 ACCAGAGCCAGCCTAGTAGG 60.398 60.000 12.27 12.27 38.80 3.18
4321 6756 3.403558 GCCCACCACCTCCTCTCC 61.404 72.222 0.00 0.00 0.00 3.71
4430 6873 3.542676 ACCTTGGACGACGCCACA 61.543 61.111 10.00 0.00 37.75 4.17
4432 6875 2.279851 CTTGGACGACGCCACACA 60.280 61.111 10.00 0.00 37.75 3.72
4433 6876 2.279851 TTGGACGACGCCACACAG 60.280 61.111 10.00 0.00 37.75 3.66
4469 6922 2.602676 CCTTCTCCCGCTTCCCCAA 61.603 63.158 0.00 0.00 0.00 4.12
4481 6934 3.825623 CCCCAATGCCTCTCCCCC 61.826 72.222 0.00 0.00 0.00 5.40
4500 6954 1.684049 CTCCTCTGCTCTTCCCCGT 60.684 63.158 0.00 0.00 0.00 5.28
4551 7005 3.261951 CGATTACCGCGGCCACAG 61.262 66.667 28.58 10.88 0.00 3.66
4562 7016 4.648626 GCCACAGCCACTGCCTCA 62.649 66.667 0.00 0.00 38.69 3.86
4611 7065 3.610669 CCGCCCTCATCCTCTCCG 61.611 72.222 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.312421 ACGAATGCCCTCGAATATTTGTG 59.688 43.478 11.11 0.51 41.44 3.33
3 4 3.541632 ACGAATGCCCTCGAATATTTGT 58.458 40.909 11.11 0.00 41.44 2.83
8 9 4.556233 CAGATTACGAATGCCCTCGAATA 58.444 43.478 11.11 0.00 41.44 1.75
10 11 2.821546 CAGATTACGAATGCCCTCGAA 58.178 47.619 11.11 2.72 41.44 3.71
12 13 0.861837 GCAGATTACGAATGCCCTCG 59.138 55.000 3.21 3.21 44.50 4.63
15 16 1.014352 AACGCAGATTACGAATGCCC 58.986 50.000 0.00 0.00 36.60 5.36
16 17 1.268032 CCAACGCAGATTACGAATGCC 60.268 52.381 0.00 0.00 36.60 4.40
18 19 3.186909 TCTCCAACGCAGATTACGAATG 58.813 45.455 0.00 0.00 0.00 2.67
19 20 3.520290 TCTCCAACGCAGATTACGAAT 57.480 42.857 0.00 0.00 0.00 3.34
20 21 3.186909 CATCTCCAACGCAGATTACGAA 58.813 45.455 0.00 0.00 0.00 3.85
21 22 2.809446 CATCTCCAACGCAGATTACGA 58.191 47.619 0.00 0.00 0.00 3.43
22 23 1.258982 GCATCTCCAACGCAGATTACG 59.741 52.381 0.00 0.00 0.00 3.18
23 24 1.599542 GGCATCTCCAACGCAGATTAC 59.400 52.381 0.00 0.00 34.01 1.89
24 25 1.486310 AGGCATCTCCAACGCAGATTA 59.514 47.619 0.00 0.00 37.29 1.75
25 26 0.254178 AGGCATCTCCAACGCAGATT 59.746 50.000 0.00 0.00 37.29 2.40
26 27 0.463295 CAGGCATCTCCAACGCAGAT 60.463 55.000 0.00 0.00 37.29 2.90
27 28 1.078918 CAGGCATCTCCAACGCAGA 60.079 57.895 0.00 0.00 37.29 4.26
28 29 2.110967 CCAGGCATCTCCAACGCAG 61.111 63.158 0.00 0.00 37.29 5.18
29 30 2.046023 CCAGGCATCTCCAACGCA 60.046 61.111 0.00 0.00 37.29 5.24
30 31 2.252072 TACCCAGGCATCTCCAACGC 62.252 60.000 0.00 0.00 37.29 4.84
31 32 0.469917 ATACCCAGGCATCTCCAACG 59.530 55.000 0.00 0.00 37.29 4.10
32 33 1.771255 AGATACCCAGGCATCTCCAAC 59.229 52.381 0.00 0.00 37.29 3.77
33 34 2.196742 AGATACCCAGGCATCTCCAA 57.803 50.000 0.00 0.00 37.29 3.53
34 35 2.493500 CCTAGATACCCAGGCATCTCCA 60.494 54.545 2.55 0.00 37.29 3.86
35 36 2.183679 CCTAGATACCCAGGCATCTCC 58.816 57.143 2.55 0.00 33.58 3.71
36 37 2.183679 CCCTAGATACCCAGGCATCTC 58.816 57.143 2.55 0.00 33.58 2.75
37 38 1.203364 CCCCTAGATACCCAGGCATCT 60.203 57.143 4.82 4.82 35.67 2.90
38 39 1.280457 CCCCTAGATACCCAGGCATC 58.720 60.000 0.00 0.00 0.00 3.91
39 40 0.842467 GCCCCTAGATACCCAGGCAT 60.842 60.000 0.00 0.00 40.20 4.40
40 41 1.461461 GCCCCTAGATACCCAGGCA 60.461 63.158 0.00 0.00 40.20 4.75
41 42 2.584391 CGCCCCTAGATACCCAGGC 61.584 68.421 0.00 0.00 37.03 4.85
42 43 1.152312 ACGCCCCTAGATACCCAGG 60.152 63.158 0.00 0.00 0.00 4.45
43 44 1.186267 GGACGCCCCTAGATACCCAG 61.186 65.000 0.00 0.00 0.00 4.45
44 45 1.152398 GGACGCCCCTAGATACCCA 60.152 63.158 0.00 0.00 0.00 4.51
45 46 2.273912 CGGACGCCCCTAGATACCC 61.274 68.421 0.00 0.00 0.00 3.69
46 47 1.111715 AACGGACGCCCCTAGATACC 61.112 60.000 0.00 0.00 0.00 2.73
48 49 0.748450 CAAACGGACGCCCCTAGATA 59.252 55.000 0.00 0.00 0.00 1.98
51 52 0.748450 TATCAAACGGACGCCCCTAG 59.252 55.000 0.00 0.00 0.00 3.02
53 54 0.544697 ATTATCAAACGGACGCCCCT 59.455 50.000 0.00 0.00 0.00 4.79
54 55 0.942252 GATTATCAAACGGACGCCCC 59.058 55.000 0.00 0.00 0.00 5.80
55 56 0.942252 GGATTATCAAACGGACGCCC 59.058 55.000 0.00 0.00 0.00 6.13
57 58 1.597663 CCAGGATTATCAAACGGACGC 59.402 52.381 0.00 0.00 0.00 5.19
58 59 2.901249 ACCAGGATTATCAAACGGACG 58.099 47.619 0.00 0.00 0.00 4.79
60 61 5.659525 TCTCTAACCAGGATTATCAAACGGA 59.340 40.000 0.00 0.00 0.00 4.69
61 62 5.914033 TCTCTAACCAGGATTATCAAACGG 58.086 41.667 0.00 0.00 0.00 4.44
62 63 6.073548 GCATCTCTAACCAGGATTATCAAACG 60.074 42.308 0.00 0.00 0.00 3.60
63 64 6.205658 GGCATCTCTAACCAGGATTATCAAAC 59.794 42.308 0.00 0.00 0.00 2.93
64 65 6.299141 GGCATCTCTAACCAGGATTATCAAA 58.701 40.000 0.00 0.00 0.00 2.69
66 67 4.287067 GGGCATCTCTAACCAGGATTATCA 59.713 45.833 0.00 0.00 0.00 2.15
67 68 4.323868 GGGGCATCTCTAACCAGGATTATC 60.324 50.000 0.00 0.00 0.00 1.75
68 69 3.589288 GGGGCATCTCTAACCAGGATTAT 59.411 47.826 0.00 0.00 0.00 1.28
69 70 2.979678 GGGGCATCTCTAACCAGGATTA 59.020 50.000 0.00 0.00 0.00 1.75
72 73 0.343372 AGGGGCATCTCTAACCAGGA 59.657 55.000 0.00 0.00 0.00 3.86
73 74 1.133976 CAAGGGGCATCTCTAACCAGG 60.134 57.143 0.00 0.00 0.00 4.45
74 75 1.839994 TCAAGGGGCATCTCTAACCAG 59.160 52.381 0.00 0.00 0.00 4.00
76 77 3.366052 TTTCAAGGGGCATCTCTAACC 57.634 47.619 0.00 0.00 0.00 2.85
159 160 5.392767 TCGAGATGAGTTCTAGCAAAACT 57.607 39.130 0.00 0.00 39.61 2.66
160 161 5.807520 TCATCGAGATGAGTTCTAGCAAAAC 59.192 40.000 11.37 0.00 42.42 2.43
162 163 5.582689 TCATCGAGATGAGTTCTAGCAAA 57.417 39.130 11.37 0.00 42.42 3.68
190 191 8.411683 GCTATGAAAGATGAATGAGACCAAATT 58.588 33.333 0.00 0.00 0.00 1.82
192 193 6.319658 GGCTATGAAAGATGAATGAGACCAAA 59.680 38.462 0.00 0.00 0.00 3.28
196 197 7.361127 CAATGGCTATGAAAGATGAATGAGAC 58.639 38.462 0.00 0.00 0.00 3.36
197 198 6.489022 CCAATGGCTATGAAAGATGAATGAGA 59.511 38.462 0.00 0.00 0.00 3.27
199 200 6.367161 TCCAATGGCTATGAAAGATGAATGA 58.633 36.000 0.00 0.00 0.00 2.57
200 201 6.644248 TCCAATGGCTATGAAAGATGAATG 57.356 37.500 0.00 0.00 0.00 2.67
203 204 5.533528 CACATCCAATGGCTATGAAAGATGA 59.466 40.000 7.82 0.00 35.13 2.92
204 205 5.533528 TCACATCCAATGGCTATGAAAGATG 59.466 40.000 7.82 9.07 36.73 2.90
207 208 5.769367 CATCACATCCAATGGCTATGAAAG 58.231 41.667 7.82 0.00 33.60 2.62
209 210 3.570975 GCATCACATCCAATGGCTATGAA 59.429 43.478 7.82 0.00 33.60 2.57
213 214 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
215 216 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
216 217 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
217 218 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
218 219 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
219 220 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
221 222 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
223 224 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
224 225 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
225 226 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
227 228 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
229 230 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
232 233 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
235 236 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
236 237 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
237 238 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
239 240 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
242 243 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
244 245 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
245 246 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
246 247 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
247 248 0.973632 AGATACAACCCACGTCAGCA 59.026 50.000 0.00 0.00 0.00 4.41
248 249 1.204941 AGAGATACAACCCACGTCAGC 59.795 52.381 0.00 0.00 0.00 4.26
249 250 3.193691 AGAAGAGATACAACCCACGTCAG 59.806 47.826 0.00 0.00 0.00 3.51
250 251 3.162666 AGAAGAGATACAACCCACGTCA 58.837 45.455 0.00 0.00 0.00 4.35
251 252 3.870633 AGAAGAGATACAACCCACGTC 57.129 47.619 0.00 0.00 0.00 4.34
253 254 3.926616 ACAAGAAGAGATACAACCCACG 58.073 45.455 0.00 0.00 0.00 4.94
254 255 6.262273 TGAAAACAAGAAGAGATACAACCCAC 59.738 38.462 0.00 0.00 0.00 4.61
255 256 6.361433 TGAAAACAAGAAGAGATACAACCCA 58.639 36.000 0.00 0.00 0.00 4.51
257 258 8.406297 ACTTTGAAAACAAGAAGAGATACAACC 58.594 33.333 0.00 0.00 0.00 3.77
258 259 9.226345 CACTTTGAAAACAAGAAGAGATACAAC 57.774 33.333 0.00 0.00 0.00 3.32
260 261 8.731275 TCACTTTGAAAACAAGAAGAGATACA 57.269 30.769 0.00 0.00 0.00 2.29
265 266 8.400947 TCTCATTCACTTTGAAAACAAGAAGAG 58.599 33.333 0.00 0.00 40.12 2.85
266 267 8.184192 GTCTCATTCACTTTGAAAACAAGAAGA 58.816 33.333 0.00 0.00 40.12 2.87
311 312 3.565063 GTCGGGAGTACCTAGAACTCATC 59.435 52.174 20.28 13.40 44.25 2.92
312 313 3.553904 GTCGGGAGTACCTAGAACTCAT 58.446 50.000 20.28 0.00 44.25 2.90
313 314 2.679059 CGTCGGGAGTACCTAGAACTCA 60.679 54.545 20.28 4.45 44.25 3.41
314 315 1.939255 CGTCGGGAGTACCTAGAACTC 59.061 57.143 13.84 13.84 42.19 3.01
315 316 1.556911 TCGTCGGGAGTACCTAGAACT 59.443 52.381 0.00 0.00 36.97 3.01
316 317 1.668237 GTCGTCGGGAGTACCTAGAAC 59.332 57.143 0.00 0.00 36.97 3.01
317 318 1.278985 TGTCGTCGGGAGTACCTAGAA 59.721 52.381 0.00 0.00 36.97 2.10
318 319 0.904649 TGTCGTCGGGAGTACCTAGA 59.095 55.000 0.00 0.00 36.97 2.43
320 321 1.453155 GTTGTCGTCGGGAGTACCTA 58.547 55.000 0.00 0.00 36.97 3.08
322 323 1.154150 CGTTGTCGTCGGGAGTACC 60.154 63.158 0.00 0.00 0.00 3.34
323 324 1.154150 CCGTTGTCGTCGGGAGTAC 60.154 63.158 0.00 0.00 43.68 2.73
324 325 2.981560 GCCGTTGTCGTCGGGAGTA 61.982 63.158 6.50 0.00 46.90 2.59
333 334 4.659874 GTTGTGCCGCCGTTGTCG 62.660 66.667 0.00 0.00 0.00 4.35
352 353 3.035363 TGCAGTAGGTGAAATCGGGATA 58.965 45.455 0.00 0.00 0.00 2.59
356 357 3.185246 AGATGCAGTAGGTGAAATCGG 57.815 47.619 0.00 0.00 0.00 4.18
363 364 3.529533 CTGAAGGAAGATGCAGTAGGTG 58.470 50.000 0.00 0.00 0.00 4.00
367 368 1.210478 GCCCTGAAGGAAGATGCAGTA 59.790 52.381 0.00 0.00 38.24 2.74
375 398 1.153628 CGTACCGCCCTGAAGGAAG 60.154 63.158 0.00 0.00 38.24 3.46
382 405 1.082117 GTGTTCATCGTACCGCCCTG 61.082 60.000 0.00 0.00 0.00 4.45
383 406 1.217244 GTGTTCATCGTACCGCCCT 59.783 57.895 0.00 0.00 0.00 5.19
385 408 1.812507 GGGTGTTCATCGTACCGCC 60.813 63.158 0.00 0.00 35.31 6.13
386 409 0.390735 AAGGGTGTTCATCGTACCGC 60.391 55.000 0.00 0.00 35.31 5.68
387 410 1.355971 CAAGGGTGTTCATCGTACCG 58.644 55.000 0.00 0.00 35.31 4.02
388 411 1.084289 GCAAGGGTGTTCATCGTACC 58.916 55.000 0.00 0.00 0.00 3.34
390 413 1.066430 GGAGCAAGGGTGTTCATCGTA 60.066 52.381 0.00 0.00 36.74 3.43
391 414 0.321653 GGAGCAAGGGTGTTCATCGT 60.322 55.000 0.00 0.00 36.74 3.73
392 415 0.321564 TGGAGCAAGGGTGTTCATCG 60.322 55.000 0.00 0.00 36.74 3.84
395 418 0.465460 GTGTGGAGCAAGGGTGTTCA 60.465 55.000 0.00 0.00 36.74 3.18
396 419 1.507141 CGTGTGGAGCAAGGGTGTTC 61.507 60.000 0.00 0.00 34.41 3.18
397 420 1.525995 CGTGTGGAGCAAGGGTGTT 60.526 57.895 0.00 0.00 0.00 3.32
399 422 1.669115 CTCGTGTGGAGCAAGGGTG 60.669 63.158 0.00 0.00 35.63 4.61
460 487 4.848357 AGAAACTAGGTTGGTCATCCATG 58.152 43.478 0.00 0.00 43.91 3.66
461 488 4.536090 TGAGAAACTAGGTTGGTCATCCAT 59.464 41.667 0.00 0.00 43.91 3.41
462 489 3.907474 TGAGAAACTAGGTTGGTCATCCA 59.093 43.478 0.00 0.00 42.66 3.41
463 490 4.508662 CTGAGAAACTAGGTTGGTCATCC 58.491 47.826 0.00 0.00 0.00 3.51
464 491 3.935828 GCTGAGAAACTAGGTTGGTCATC 59.064 47.826 0.00 0.00 0.00 2.92
465 492 3.307762 GGCTGAGAAACTAGGTTGGTCAT 60.308 47.826 0.00 0.00 0.00 3.06
466 493 2.038557 GGCTGAGAAACTAGGTTGGTCA 59.961 50.000 0.00 0.00 0.00 4.02
488 515 1.194781 AGCGGGTCACTGGTTGATCT 61.195 55.000 0.00 0.00 35.41 2.75
550 578 1.084289 GTTCTTCATGTGCCGTACCC 58.916 55.000 0.00 0.00 0.00 3.69
595 623 0.107643 TGACCACGACCTTGCATTGA 59.892 50.000 0.00 0.00 0.00 2.57
596 624 0.518636 CTGACCACGACCTTGCATTG 59.481 55.000 0.00 0.00 0.00 2.82
600 628 2.022129 CGTCTGACCACGACCTTGC 61.022 63.158 1.55 0.00 42.69 4.01
617 645 2.780094 TTGCTTGCACCCACCAACG 61.780 57.895 0.00 0.00 0.00 4.10
758 786 4.751600 TCGATAGTGGCATCATTGTGATTC 59.248 41.667 0.00 0.00 33.78 2.52
762 790 4.260907 CCTTTCGATAGTGGCATCATTGTG 60.261 45.833 2.13 0.00 37.40 3.33
763 791 3.879295 CCTTTCGATAGTGGCATCATTGT 59.121 43.478 2.13 0.00 37.40 2.71
764 792 3.304257 GCCTTTCGATAGTGGCATCATTG 60.304 47.826 11.78 0.00 43.40 2.82
771 799 1.599542 GTGATGCCTTTCGATAGTGGC 59.400 52.381 10.31 10.31 43.87 5.01
772 800 2.905075 TGTGATGCCTTTCGATAGTGG 58.095 47.619 2.13 0.00 37.40 4.00
773 801 4.728882 GCTTTGTGATGCCTTTCGATAGTG 60.729 45.833 2.13 0.00 37.40 2.74
774 802 3.375299 GCTTTGTGATGCCTTTCGATAGT 59.625 43.478 2.13 0.00 37.40 2.12
775 803 3.242870 GGCTTTGTGATGCCTTTCGATAG 60.243 47.826 0.00 0.00 45.26 2.08
776 804 2.682856 GGCTTTGTGATGCCTTTCGATA 59.317 45.455 0.00 0.00 45.26 2.92
777 805 1.474077 GGCTTTGTGATGCCTTTCGAT 59.526 47.619 0.00 0.00 45.26 3.59
780 808 0.881118 TCGGCTTTGTGATGCCTTTC 59.119 50.000 0.00 0.00 46.42 2.62
785 813 0.730494 GCACTTCGGCTTTGTGATGC 60.730 55.000 0.00 0.00 33.95 3.91
808 836 9.890629 TTGGTATTTATATCCTTGCTAGCATAG 57.109 33.333 20.13 17.37 43.09 2.23
809 837 9.667107 GTTGGTATTTATATCCTTGCTAGCATA 57.333 33.333 20.13 8.33 0.00 3.14
831 859 2.094675 GGATCATCTTGGGTGTGTTGG 58.905 52.381 0.00 0.00 0.00 3.77
832 860 2.794103 TGGATCATCTTGGGTGTGTTG 58.206 47.619 0.00 0.00 0.00 3.33
833 861 3.524095 TTGGATCATCTTGGGTGTGTT 57.476 42.857 0.00 0.00 0.00 3.32
850 878 1.938625 CTGGTGTTTGGCTTGTTTGG 58.061 50.000 0.00 0.00 0.00 3.28
867 898 0.805322 CTTGCTGGTCGCTAGAGCTG 60.805 60.000 0.00 0.42 42.98 4.24
886 917 6.870439 ACGAGTTTGGTTGGAAGTATTACTAC 59.130 38.462 0.00 0.00 33.72 2.73
887 918 6.996509 ACGAGTTTGGTTGGAAGTATTACTA 58.003 36.000 0.00 0.00 0.00 1.82
889 920 6.368213 CAACGAGTTTGGTTGGAAGTATTAC 58.632 40.000 0.00 0.00 40.75 1.89
890 921 5.049267 GCAACGAGTTTGGTTGGAAGTATTA 60.049 40.000 6.77 0.00 43.77 0.98
893 924 2.614983 GCAACGAGTTTGGTTGGAAGTA 59.385 45.455 6.77 0.00 43.77 2.24
894 925 1.404035 GCAACGAGTTTGGTTGGAAGT 59.596 47.619 6.77 0.00 43.77 3.01
895 926 1.269051 GGCAACGAGTTTGGTTGGAAG 60.269 52.381 6.77 0.00 43.77 3.46
896 927 0.741915 GGCAACGAGTTTGGTTGGAA 59.258 50.000 6.77 0.00 43.77 3.53
903 934 2.051345 GCGGTGGCAACGAGTTTG 60.051 61.111 31.68 0.00 39.62 2.93
904 935 3.645975 CGCGGTGGCAACGAGTTT 61.646 61.111 31.68 0.00 39.92 2.66
910 941 2.136196 TTTTGATCCGCGGTGGCAAC 62.136 55.000 27.15 4.79 39.92 4.17
912 943 2.281831 TTTTGATCCGCGGTGGCA 60.282 55.556 27.15 18.39 39.92 4.92
922 953 3.078837 TGGGCGTCTTAACCTTTTGATC 58.921 45.455 0.00 0.00 0.00 2.92
1149 1199 3.490759 CGGCGCTGCGAGTTGAAT 61.491 61.111 28.07 0.00 0.00 2.57
1266 1319 3.876589 GAAGAACCCGCCTGTCGCA 62.877 63.158 0.00 0.00 37.30 5.10
1530 1583 2.494870 GGAATCAAAATCACCAGCAGCT 59.505 45.455 0.00 0.00 0.00 4.24
1533 1586 1.202114 GCGGAATCAAAATCACCAGCA 59.798 47.619 0.00 0.00 0.00 4.41
1536 1589 0.808125 CGGCGGAATCAAAATCACCA 59.192 50.000 0.00 0.00 0.00 4.17
1545 1598 4.321966 TGCACCACGGCGGAATCA 62.322 61.111 13.24 0.00 38.63 2.57
1664 1721 0.319555 CGGTCGTCTCTTCCAGCAAA 60.320 55.000 0.00 0.00 0.00 3.68
1669 1726 2.670592 TCGCGGTCGTCTCTTCCA 60.671 61.111 6.13 0.00 36.96 3.53
1683 1744 0.025513 CGTATGCTTGCTTGACTCGC 59.974 55.000 0.00 0.00 0.00 5.03
1732 1793 8.836413 CCACTGGACGATTTGTACATTAAATAT 58.164 33.333 0.00 0.00 41.78 1.28
1734 1795 6.657541 ACCACTGGACGATTTGTACATTAAAT 59.342 34.615 0.71 0.00 41.78 1.40
1741 1802 4.933400 ACAATACCACTGGACGATTTGTAC 59.067 41.667 0.71 0.00 0.00 2.90
1750 1811 5.531122 TCTAGCATACAATACCACTGGAC 57.469 43.478 0.71 0.00 0.00 4.02
1752 1813 5.057149 GGTTCTAGCATACAATACCACTGG 58.943 45.833 0.00 0.00 0.00 4.00
1760 1928 7.775053 TTTTTGGAAGGTTCTAGCATACAAT 57.225 32.000 0.00 0.00 0.00 2.71
1818 2065 5.283717 CACCTTTTTGCGAGTTATCATTTCG 59.716 40.000 0.00 0.00 37.40 3.46
1899 2147 0.544357 TGTGAGTCCTAGGGTGGTGG 60.544 60.000 9.46 0.00 0.00 4.61
1903 2151 2.692557 CTGAGATGTGAGTCCTAGGGTG 59.307 54.545 9.46 0.00 0.00 4.61
1911 2159 1.781786 TAGGGCCTGAGATGTGAGTC 58.218 55.000 18.53 0.00 0.00 3.36
1919 2167 2.050350 CGGACGTTAGGGCCTGAGA 61.050 63.158 18.53 0.00 0.00 3.27
1920 2168 2.280823 GACGGACGTTAGGGCCTGAG 62.281 65.000 18.53 9.79 0.00 3.35
1922 2170 1.033746 TAGACGGACGTTAGGGCCTG 61.034 60.000 18.53 1.14 0.00 4.85
1972 2496 2.752903 GTTGGAAGGTCATTGCCGTATT 59.247 45.455 0.00 0.00 0.00 1.89
1974 2498 1.072489 TGTTGGAAGGTCATTGCCGTA 59.928 47.619 0.00 0.00 0.00 4.02
1977 2501 3.683365 ATTTGTTGGAAGGTCATTGCC 57.317 42.857 0.00 0.00 0.00 4.52
1978 2502 6.212888 AGATATTTGTTGGAAGGTCATTGC 57.787 37.500 0.00 0.00 0.00 3.56
1983 2507 7.682021 GCCATGTTAGATATTTGTTGGAAGGTC 60.682 40.741 0.00 0.00 0.00 3.85
1991 2515 9.941325 TTGATTTTGCCATGTTAGATATTTGTT 57.059 25.926 0.00 0.00 0.00 2.83
1992 2516 9.369904 GTTGATTTTGCCATGTTAGATATTTGT 57.630 29.630 0.00 0.00 0.00 2.83
2015 2572 4.815269 TGATTTTATTTGGCGGAAGGTTG 58.185 39.130 0.00 0.00 0.00 3.77
2036 2593 7.905604 TGATATAGATATTGGCGGAAAGTTG 57.094 36.000 0.00 0.00 0.00 3.16
2040 2597 7.016153 AGGTTGATATAGATATTGGCGGAAA 57.984 36.000 0.00 0.00 0.00 3.13
2043 2600 5.817816 GGAAGGTTGATATAGATATTGGCGG 59.182 44.000 0.00 0.00 0.00 6.13
2044 2601 5.817816 GGGAAGGTTGATATAGATATTGGCG 59.182 44.000 0.00 0.00 0.00 5.69
2045 2602 6.122964 GGGGAAGGTTGATATAGATATTGGC 58.877 44.000 0.00 0.00 0.00 4.52
2046 2603 7.270832 TGGGGAAGGTTGATATAGATATTGG 57.729 40.000 0.00 0.00 0.00 3.16
2047 2604 9.759473 ATTTGGGGAAGGTTGATATAGATATTG 57.241 33.333 0.00 0.00 0.00 1.90
2054 2611 9.944079 TGATTTTATTTGGGGAAGGTTGATATA 57.056 29.630 0.00 0.00 0.00 0.86
2055 2612 8.852671 TGATTTTATTTGGGGAAGGTTGATAT 57.147 30.769 0.00 0.00 0.00 1.63
2056 2613 8.536175 GTTGATTTTATTTGGGGAAGGTTGATA 58.464 33.333 0.00 0.00 0.00 2.15
2078 2636 2.871096 AGGTATTGGCGGAAAGTTGA 57.129 45.000 0.00 0.00 0.00 3.18
2095 2653 6.314400 CAGAAATTTGATTTGGCCATGTTAGG 59.686 38.462 6.09 0.00 31.47 2.69
2096 2654 6.183360 GCAGAAATTTGATTTGGCCATGTTAG 60.183 38.462 6.09 0.00 31.47 2.34
2113 2671 8.454570 AAAGTTGATTTCATTTGGCAGAAATT 57.545 26.923 12.66 0.00 42.67 1.82
2114 2672 8.091385 GAAAGTTGATTTCATTTGGCAGAAAT 57.909 30.769 11.61 11.61 45.63 2.17
2132 2690 0.744281 ACGGGTTTGGCAGAAAGTTG 59.256 50.000 0.00 0.00 0.00 3.16
2133 2691 1.029681 GACGGGTTTGGCAGAAAGTT 58.970 50.000 0.00 0.00 0.00 2.66
2134 2692 0.822121 GGACGGGTTTGGCAGAAAGT 60.822 55.000 0.00 0.00 0.00 2.66
2135 2693 1.852067 CGGACGGGTTTGGCAGAAAG 61.852 60.000 0.00 0.00 0.00 2.62
2136 2694 1.894756 CGGACGGGTTTGGCAGAAA 60.895 57.895 0.00 0.00 0.00 2.52
2137 2695 2.281208 CGGACGGGTTTGGCAGAA 60.281 61.111 0.00 0.00 0.00 3.02
2142 2700 1.811645 ATTTTGGCGGACGGGTTTGG 61.812 55.000 0.00 0.00 0.00 3.28
2143 2701 0.665972 CATTTTGGCGGACGGGTTTG 60.666 55.000 0.00 0.00 0.00 2.93
2144 2702 0.824182 TCATTTTGGCGGACGGGTTT 60.824 50.000 0.00 0.00 0.00 3.27
2145 2703 0.824182 TTCATTTTGGCGGACGGGTT 60.824 50.000 0.00 0.00 0.00 4.11
2146 2704 0.610785 ATTCATTTTGGCGGACGGGT 60.611 50.000 0.00 0.00 0.00 5.28
2147 2705 0.530288 AATTCATTTTGGCGGACGGG 59.470 50.000 0.00 0.00 0.00 5.28
2148 2706 1.201181 TGAATTCATTTTGGCGGACGG 59.799 47.619 3.38 0.00 0.00 4.79
2149 2707 2.627863 TGAATTCATTTTGGCGGACG 57.372 45.000 3.38 0.00 0.00 4.79
2150 2708 3.913089 AGTTGAATTCATTTTGGCGGAC 58.087 40.909 9.40 0.94 0.00 4.79
2151 2709 4.599047 AAGTTGAATTCATTTTGGCGGA 57.401 36.364 9.40 0.00 0.00 5.54
2152 2710 4.152223 GGAAAGTTGAATTCATTTTGGCGG 59.848 41.667 18.00 0.00 0.00 6.13
2153 2711 4.749099 TGGAAAGTTGAATTCATTTTGGCG 59.251 37.500 18.00 0.00 0.00 5.69
2154 2712 5.049474 GGTGGAAAGTTGAATTCATTTTGGC 60.049 40.000 18.00 8.60 0.00 4.52
2155 2713 6.054295 TGGTGGAAAGTTGAATTCATTTTGG 58.946 36.000 18.00 0.00 0.00 3.28
2156 2714 6.762661 ACTGGTGGAAAGTTGAATTCATTTTG 59.237 34.615 18.00 8.90 0.00 2.44
2157 2715 6.888105 ACTGGTGGAAAGTTGAATTCATTTT 58.112 32.000 9.40 12.73 0.00 1.82
2158 2716 6.484364 ACTGGTGGAAAGTTGAATTCATTT 57.516 33.333 9.40 7.85 0.00 2.32
2159 2717 7.671398 AGATACTGGTGGAAAGTTGAATTCATT 59.329 33.333 9.40 0.16 0.00 2.57
2160 2718 7.177878 AGATACTGGTGGAAAGTTGAATTCAT 58.822 34.615 9.40 0.00 0.00 2.57
2161 2719 6.542821 AGATACTGGTGGAAAGTTGAATTCA 58.457 36.000 3.38 3.38 0.00 2.57
2162 2720 8.451748 GTTAGATACTGGTGGAAAGTTGAATTC 58.548 37.037 0.00 0.00 0.00 2.17
2163 2721 7.942341 TGTTAGATACTGGTGGAAAGTTGAATT 59.058 33.333 0.00 0.00 0.00 2.17
2164 2722 7.458397 TGTTAGATACTGGTGGAAAGTTGAAT 58.542 34.615 0.00 0.00 0.00 2.57
2165 2723 6.833041 TGTTAGATACTGGTGGAAAGTTGAA 58.167 36.000 0.00 0.00 0.00 2.69
2166 2724 6.428083 TGTTAGATACTGGTGGAAAGTTGA 57.572 37.500 0.00 0.00 0.00 3.18
2167 2725 7.011482 GCTATGTTAGATACTGGTGGAAAGTTG 59.989 40.741 0.00 0.00 0.00 3.16
2172 2730 4.966168 TGGCTATGTTAGATACTGGTGGAA 59.034 41.667 0.00 0.00 0.00 3.53
2180 2738 8.051901 AGGTTTGTTTTGGCTATGTTAGATAC 57.948 34.615 0.00 0.00 0.00 2.24
2183 2741 6.969993 AAGGTTTGTTTTGGCTATGTTAGA 57.030 33.333 0.00 0.00 0.00 2.10
2198 2756 3.922171 TTCATTTGGCCAAAGGTTTGT 57.078 38.095 34.61 16.99 36.45 2.83
2202 2760 4.703379 TTGATTTCATTTGGCCAAAGGT 57.297 36.364 34.61 20.86 34.15 3.50
2204 2762 7.168637 CGATAGATTGATTTCATTTGGCCAAAG 59.831 37.037 32.85 24.06 39.76 2.77
2206 2764 6.506147 CGATAGATTGATTTCATTTGGCCAA 58.494 36.000 16.05 16.05 39.76 4.52
2208 2766 4.919754 GCGATAGATTGATTTCATTTGGCC 59.080 41.667 0.00 0.00 39.76 5.36
2209 2767 4.919754 GGCGATAGATTGATTTCATTTGGC 59.080 41.667 0.00 0.00 39.76 4.52
2210 2768 6.075762 TGGCGATAGATTGATTTCATTTGG 57.924 37.500 0.00 0.00 39.76 3.28
2211 2769 7.990541 TTTGGCGATAGATTGATTTCATTTG 57.009 32.000 0.00 0.00 39.76 2.32
2212 2770 7.654520 CCATTTGGCGATAGATTGATTTCATTT 59.345 33.333 0.00 0.00 39.76 2.32
2213 2771 7.149973 CCATTTGGCGATAGATTGATTTCATT 58.850 34.615 0.00 0.00 39.76 2.57
2214 2772 6.294899 CCCATTTGGCGATAGATTGATTTCAT 60.295 38.462 0.00 0.00 39.76 2.57
2215 2773 5.009911 CCCATTTGGCGATAGATTGATTTCA 59.990 40.000 0.00 0.00 39.76 2.69
2216 2774 5.010012 ACCCATTTGGCGATAGATTGATTTC 59.990 40.000 0.00 0.00 37.83 2.17
2217 2775 4.895297 ACCCATTTGGCGATAGATTGATTT 59.105 37.500 0.00 0.00 37.83 2.17
2218 2776 4.473444 ACCCATTTGGCGATAGATTGATT 58.527 39.130 0.00 0.00 37.83 2.57
2219 2777 4.104383 ACCCATTTGGCGATAGATTGAT 57.896 40.909 0.00 0.00 37.83 2.57
2220 2778 3.576078 ACCCATTTGGCGATAGATTGA 57.424 42.857 0.00 0.00 37.83 2.57
2221 2779 4.133820 TGTACCCATTTGGCGATAGATTG 58.866 43.478 0.00 0.00 37.83 2.67
2222 2780 4.431416 TGTACCCATTTGGCGATAGATT 57.569 40.909 0.00 0.00 37.83 2.40
2223 2781 4.326826 CATGTACCCATTTGGCGATAGAT 58.673 43.478 0.00 0.00 37.83 1.98
2224 2782 3.495983 CCATGTACCCATTTGGCGATAGA 60.496 47.826 0.00 0.00 37.83 1.98
2225 2783 2.813754 CCATGTACCCATTTGGCGATAG 59.186 50.000 0.00 0.00 37.83 2.08
2226 2784 2.857483 CCATGTACCCATTTGGCGATA 58.143 47.619 0.00 0.00 37.83 2.92
2227 2785 1.691196 CCATGTACCCATTTGGCGAT 58.309 50.000 0.00 0.00 37.83 4.58
2228 2786 1.034838 GCCATGTACCCATTTGGCGA 61.035 55.000 0.00 0.00 37.83 5.54
2229 2787 1.437160 GCCATGTACCCATTTGGCG 59.563 57.895 0.00 0.00 37.83 5.69
2242 2800 2.440796 ACATCGGCCTTGGCCATG 60.441 61.111 27.80 26.99 0.00 3.66
2243 2801 2.124151 GACATCGGCCTTGGCCAT 60.124 61.111 27.80 17.68 0.00 4.40
2244 2802 4.424711 GGACATCGGCCTTGGCCA 62.425 66.667 27.80 16.34 42.29 5.36
2247 2805 0.609131 AGTTTGGACATCGGCCTTGG 60.609 55.000 0.00 0.00 0.00 3.61
2248 2806 0.804989 GAGTTTGGACATCGGCCTTG 59.195 55.000 0.00 0.24 0.00 3.61
2249 2807 0.322546 GGAGTTTGGACATCGGCCTT 60.323 55.000 0.00 0.00 0.00 4.35
2250 2808 1.299976 GGAGTTTGGACATCGGCCT 59.700 57.895 0.00 0.00 0.00 5.19
2251 2809 1.749258 GGGAGTTTGGACATCGGCC 60.749 63.158 0.00 0.00 0.00 6.13
2252 2810 2.106683 CGGGAGTTTGGACATCGGC 61.107 63.158 0.00 0.00 0.00 5.54
2253 2811 2.106683 GCGGGAGTTTGGACATCGG 61.107 63.158 0.00 0.00 0.00 4.18
2254 2812 0.953471 TTGCGGGAGTTTGGACATCG 60.953 55.000 0.00 0.00 0.00 3.84
2268 2841 1.308998 AACCTGTGAGAGTTTTGCGG 58.691 50.000 0.00 0.00 0.00 5.69
2275 2848 1.541233 CGGAAGCAAACCTGTGAGAGT 60.541 52.381 0.00 0.00 0.00 3.24
2280 2853 1.247567 ATTCCGGAAGCAAACCTGTG 58.752 50.000 23.47 0.00 0.00 3.66
2281 2854 1.886542 GAATTCCGGAAGCAAACCTGT 59.113 47.619 23.47 0.00 0.00 4.00
2282 2855 1.135689 CGAATTCCGGAAGCAAACCTG 60.136 52.381 23.47 2.58 33.91 4.00
2294 2867 2.159476 TCGTCTACTTGTCCGAATTCCG 60.159 50.000 0.00 0.00 38.18 4.30
2308 2889 1.915614 TTGTCCGCGGACTCGTCTAC 61.916 60.000 46.72 27.14 44.80 2.59
2309 2890 1.236616 TTTGTCCGCGGACTCGTCTA 61.237 55.000 46.72 30.11 44.80 2.59
2310 2891 1.874345 ATTTGTCCGCGGACTCGTCT 61.874 55.000 46.72 28.90 44.80 4.18
2314 2895 1.143969 CCGTATTTGTCCGCGGACTC 61.144 60.000 46.72 31.52 46.33 3.36
2315 2896 1.153706 CCGTATTTGTCCGCGGACT 60.154 57.895 46.72 34.18 46.33 3.85
2319 2900 0.101040 TAGACCCGTATTTGTCCGCG 59.899 55.000 0.00 0.00 31.76 6.46
2320 2901 2.521105 ATAGACCCGTATTTGTCCGC 57.479 50.000 0.00 0.00 31.76 5.54
2322 2903 6.105397 TCCAATATAGACCCGTATTTGTCC 57.895 41.667 0.00 0.00 31.76 4.02
2323 2904 7.331193 GTCATCCAATATAGACCCGTATTTGTC 59.669 40.741 0.00 0.00 0.00 3.18
2324 2905 7.159372 GTCATCCAATATAGACCCGTATTTGT 58.841 38.462 0.00 0.00 0.00 2.83
2331 2912 5.611374 AGTTTGTCATCCAATATAGACCCG 58.389 41.667 0.00 0.00 31.81 5.28
2357 2938 1.480954 TCCGGACCAAGCTATTCTGAC 59.519 52.381 0.00 0.00 0.00 3.51
2363 2945 1.414181 CATCTGTCCGGACCAAGCTAT 59.586 52.381 31.19 10.70 0.00 2.97
2364 2946 0.824109 CATCTGTCCGGACCAAGCTA 59.176 55.000 31.19 11.02 0.00 3.32
2366 2948 0.460987 CTCATCTGTCCGGACCAAGC 60.461 60.000 31.19 7.14 0.00 4.01
2368 2950 1.264749 CCCTCATCTGTCCGGACCAA 61.265 60.000 31.19 19.44 0.00 3.67
2379 2961 6.365520 ACAAACTAAACAAACTCCCTCATCT 58.634 36.000 0.00 0.00 0.00 2.90
2384 2966 7.949690 ACTAAACAAACTAAACAAACTCCCT 57.050 32.000 0.00 0.00 0.00 4.20
2388 2970 7.062488 CGCCAAACTAAACAAACTAAACAAACT 59.938 33.333 0.00 0.00 0.00 2.66
2393 2975 6.874297 AACGCCAAACTAAACAAACTAAAC 57.126 33.333 0.00 0.00 0.00 2.01
2394 2976 6.310711 CCAAACGCCAAACTAAACAAACTAAA 59.689 34.615 0.00 0.00 0.00 1.85
2495 3243 7.936847 TGCTAAATGAAGAGGTGAGAAAAGTTA 59.063 33.333 0.00 0.00 0.00 2.24
2514 3262 6.772716 CCCTATGTGTTAAGTGGATGCTAAAT 59.227 38.462 0.00 0.00 0.00 1.40
2515 3263 6.069905 TCCCTATGTGTTAAGTGGATGCTAAA 60.070 38.462 0.00 0.00 0.00 1.85
2517 3265 4.966168 TCCCTATGTGTTAAGTGGATGCTA 59.034 41.667 0.00 0.00 0.00 3.49
2518 3266 3.780294 TCCCTATGTGTTAAGTGGATGCT 59.220 43.478 0.00 0.00 0.00 3.79
2519 3267 4.150897 TCCCTATGTGTTAAGTGGATGC 57.849 45.455 0.00 0.00 0.00 3.91
2520 3268 5.928976 TCATCCCTATGTGTTAAGTGGATG 58.071 41.667 8.89 8.89 45.78 3.51
2521 3269 6.409695 CCTTCATCCCTATGTGTTAAGTGGAT 60.410 42.308 0.00 0.00 34.50 3.41
2522 3270 5.104527 CCTTCATCCCTATGTGTTAAGTGGA 60.105 44.000 0.00 0.00 34.50 4.02
2523 3271 5.104527 TCCTTCATCCCTATGTGTTAAGTGG 60.105 44.000 0.00 0.00 34.50 4.00
2617 3380 7.730084 TCTGACCCTCATCAATACTAAATCAG 58.270 38.462 0.00 0.00 0.00 2.90
2644 3407 2.713167 AGATGTGGCTGCCTACCAATAT 59.287 45.455 21.03 2.37 39.39 1.28
2645 3408 2.126882 AGATGTGGCTGCCTACCAATA 58.873 47.619 21.03 0.00 39.39 1.90
2647 3410 1.578897 TAGATGTGGCTGCCTACCAA 58.421 50.000 21.03 0.00 39.39 3.67
2648 3411 1.209504 GTTAGATGTGGCTGCCTACCA 59.790 52.381 21.03 13.83 33.84 3.25
2649 3412 1.209504 TGTTAGATGTGGCTGCCTACC 59.790 52.381 21.03 8.35 0.00 3.18
2651 3414 2.187958 AGTGTTAGATGTGGCTGCCTA 58.812 47.619 21.03 9.47 0.00 3.93
2652 3415 0.987294 AGTGTTAGATGTGGCTGCCT 59.013 50.000 21.03 0.00 0.00 4.75
2653 3416 1.826385 AAGTGTTAGATGTGGCTGCC 58.174 50.000 12.87 12.87 0.00 4.85
2654 3417 3.923017 AAAAGTGTTAGATGTGGCTGC 57.077 42.857 0.00 0.00 0.00 5.25
2679 3442 2.112815 GTTAGATGTGGCACCCCGC 61.113 63.158 16.26 1.55 42.13 6.13
2680 3443 1.024579 GTGTTAGATGTGGCACCCCG 61.025 60.000 16.26 0.00 0.00 5.73
2682 3445 1.812571 CAAGTGTTAGATGTGGCACCC 59.187 52.381 16.26 7.10 32.75 4.61
2683 3446 2.778299 TCAAGTGTTAGATGTGGCACC 58.222 47.619 16.26 0.00 32.75 5.01
2685 3448 4.460263 ACTTTCAAGTGTTAGATGTGGCA 58.540 39.130 0.00 0.00 37.98 4.92
2686 3449 5.008613 TCAACTTTCAAGTGTTAGATGTGGC 59.991 40.000 0.00 0.00 39.66 5.01
2687 3450 6.618287 TCAACTTTCAAGTGTTAGATGTGG 57.382 37.500 0.00 0.00 39.66 4.17
2688 3451 7.645340 CCTTTCAACTTTCAAGTGTTAGATGTG 59.355 37.037 0.00 0.00 39.66 3.21
2689 3452 7.339466 ACCTTTCAACTTTCAAGTGTTAGATGT 59.661 33.333 0.00 0.00 39.66 3.06
2693 3458 7.282450 ACCTACCTTTCAACTTTCAAGTGTTAG 59.718 37.037 0.00 0.00 39.66 2.34
2812 3584 1.450312 GAGCTTGTCGATGGTGGGG 60.450 63.158 0.00 0.00 0.00 4.96
2877 3888 5.502706 CGATCGGTACAACAAACTTTGAACA 60.503 40.000 7.38 0.00 0.00 3.18
2912 3923 1.298339 GCACACGCAGCTTTCGTTT 60.298 52.632 7.94 0.04 38.19 3.60
2913 3924 2.180204 AGCACACGCAGCTTTCGTT 61.180 52.632 7.94 0.00 39.87 3.85
2914 3925 2.588877 AGCACACGCAGCTTTCGT 60.589 55.556 5.06 5.06 39.87 3.85
2915 3926 2.127496 CAGCACACGCAGCTTTCG 60.127 61.111 3.80 3.80 41.14 3.46
3248 4266 1.305930 GGAACGAAGCAAAGGCCGAT 61.306 55.000 0.00 0.00 42.56 4.18
3314 4332 2.358039 CCCAATCGGCGGGTATAGA 58.642 57.895 7.21 0.00 39.05 1.98
3329 4347 4.460683 GCCGCATCCACGTACCCA 62.461 66.667 0.00 0.00 0.00 4.51
3353 4371 4.927782 GTGTCCACGGGCAGCACA 62.928 66.667 0.00 0.00 0.00 4.57
3380 4398 1.374252 CGGCTGCTTCAAGTACGGT 60.374 57.895 0.00 0.00 0.00 4.83
3464 4482 3.429372 AAGCTTGAACCCACCGCCA 62.429 57.895 0.00 0.00 0.00 5.69
3470 4488 0.178992 CCACCTCAAGCTTGAACCCA 60.179 55.000 28.16 7.58 36.64 4.51
3497 4515 1.152777 CTTGTTCACCAGGGCCACA 60.153 57.895 6.18 0.00 0.00 4.17
3602 4620 1.265236 AGTCTCTGAGCTTCCAGTGG 58.735 55.000 1.40 1.40 35.71 4.00
3647 4665 0.396001 TGGCATGTGGCAGCACATAT 60.396 50.000 8.08 0.09 46.12 1.78
3791 6200 9.726438 AATTCTAGGGCTGTGACATATTATTAC 57.274 33.333 0.00 0.00 0.00 1.89
3890 6301 7.415086 TGGATTCCTTTTTATGCTAGGGTTTA 58.585 34.615 3.95 0.00 0.00 2.01
4093 6504 8.971321 CAAAAATCGGAATTATTGGAGCAATAG 58.029 33.333 0.00 0.00 37.57 1.73
4111 6522 3.059166 CAAAGCCCCTCAACAAAAATCG 58.941 45.455 0.00 0.00 0.00 3.34
4321 6756 2.362632 AGGGGGAGGAAGACGACG 60.363 66.667 0.00 0.00 0.00 5.12
4430 6873 4.677151 GGGGGTCAGGGGGTCTGT 62.677 72.222 0.00 0.00 43.76 3.41
4452 6905 0.749454 CATTGGGGAAGCGGGAGAAG 60.749 60.000 0.00 0.00 0.00 2.85
4481 6934 2.430610 CGGGGAAGAGCAGAGGAGG 61.431 68.421 0.00 0.00 0.00 4.30
4500 6954 4.435436 CTGCGCTCGGTGGTGCTA 62.435 66.667 9.73 0.00 42.46 3.49
4551 7005 2.267324 GAGAGGTGAGGCAGTGGC 59.733 66.667 9.02 9.02 40.13 5.01
4597 7051 1.448922 GACGACGGAGAGGATGAGGG 61.449 65.000 0.00 0.00 0.00 4.30
4602 7056 1.753463 GTGGGACGACGGAGAGGAT 60.753 63.158 0.00 0.00 0.00 3.24
4611 7065 0.038892 TTCTACTTGCGTGGGACGAC 60.039 55.000 0.00 0.00 46.05 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.