Multiple sequence alignment - TraesCS1B01G442200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G442200 chr1B 100.000 6615 0 0 1 6615 662844863 662838249 0.000000e+00 12216.0
1 TraesCS1B01G442200 chr1B 94.610 3766 193 10 2587 6345 20431706 20435468 0.000000e+00 5821.0
2 TraesCS1B01G442200 chr1B 94.492 3776 196 10 2586 6357 564986643 564982876 0.000000e+00 5810.0
3 TraesCS1B01G442200 chr1B 100.000 1859 0 0 6840 8698 662838024 662836166 0.000000e+00 3434.0
4 TraesCS1B01G442200 chr1B 92.225 463 30 6 6947 7405 503125552 503126012 0.000000e+00 651.0
5 TraesCS1B01G442200 chr1B 95.161 62 0 1 7983 8041 279776705 279776766 2.590000e-15 95.3
6 TraesCS1B01G442200 chr3B 93.937 4041 211 22 2587 6615 536320773 536324791 0.000000e+00 6074.0
7 TraesCS1B01G442200 chr3B 93.481 3973 216 23 2587 6532 620464525 620468481 0.000000e+00 5862.0
8 TraesCS1B01G442200 chr3B 94.636 3766 184 16 2587 6342 680108780 680105023 0.000000e+00 5819.0
9 TraesCS1B01G442200 chr3B 92.368 1140 69 6 5493 6615 536330703 536331841 0.000000e+00 1607.0
10 TraesCS1B01G442200 chr3B 87.879 759 78 11 5677 6426 660375947 660375194 0.000000e+00 880.0
11 TraesCS1B01G442200 chr3B 87.352 759 84 8 5677 6426 660368561 660367806 0.000000e+00 859.0
12 TraesCS1B01G442200 chr3B 88.929 560 44 13 6850 7405 620468973 620469518 0.000000e+00 675.0
13 TraesCS1B01G442200 chr3B 92.873 463 27 6 6946 7405 122994514 122994973 0.000000e+00 667.0
14 TraesCS1B01G442200 chr3B 92.657 463 28 6 6946 7405 123002551 123003010 0.000000e+00 662.0
15 TraesCS1B01G442200 chr3B 81.008 853 135 21 5677 6512 144968576 144967734 0.000000e+00 652.0
16 TraesCS1B01G442200 chr3B 87.215 571 56 17 6840 7405 536325120 536325678 1.230000e-177 634.0
17 TraesCS1B01G442200 chr7B 94.481 3769 200 8 2579 6342 228533199 228536964 0.000000e+00 5801.0
18 TraesCS1B01G442200 chr7B 87.391 571 46 16 6840 7405 108735923 108736472 4.430000e-177 632.0
19 TraesCS1B01G442200 chr7B 90.947 475 33 5 6932 7405 76535229 76535694 1.590000e-176 630.0
20 TraesCS1B01G442200 chr7B 87.074 557 52 13 6850 7405 108743420 108743957 5.770000e-171 612.0
21 TraesCS1B01G442200 chr7B 93.548 62 4 0 7982 8043 494751311 494751372 9.300000e-15 93.5
22 TraesCS1B01G442200 chr2B 94.264 3783 198 17 2587 6358 255415169 255418943 0.000000e+00 5766.0
23 TraesCS1B01G442200 chr2B 93.863 3813 215 15 2587 6387 657092766 657088961 0.000000e+00 5727.0
24 TraesCS1B01G442200 chr2B 91.893 3935 282 27 2587 6503 191517727 191521642 0.000000e+00 5465.0
25 TraesCS1B01G442200 chr2B 88.235 561 50 12 6850 7405 556166400 556165851 0.000000e+00 656.0
26 TraesCS1B01G442200 chr2B 92.358 458 29 5 6951 7405 443876954 443877408 0.000000e+00 647.0
27 TraesCS1B01G442200 chr2B 85.846 544 59 13 6850 7387 368281350 368280819 5.900000e-156 562.0
28 TraesCS1B01G442200 chr2B 89.773 88 7 2 6418 6503 144354954 144355041 2.570000e-20 111.0
29 TraesCS1B01G442200 chr2B 96.825 63 1 1 7983 8045 475636353 475636292 4.300000e-18 104.0
30 TraesCS1B01G442200 chr5B 94.343 3765 200 9 2587 6343 629447575 629443816 0.000000e+00 5760.0
31 TraesCS1B01G442200 chr5B 94.277 3774 197 15 2587 6351 227789443 227785680 0.000000e+00 5755.0
32 TraesCS1B01G442200 chr5B 92.145 3934 279 28 2587 6503 639182088 639186008 0.000000e+00 5526.0
33 TraesCS1B01G442200 chr5B 92.029 3914 270 31 2587 6481 639174539 639178429 0.000000e+00 5461.0
34 TraesCS1B01G442200 chr5B 92.334 3744 245 30 2587 6317 4970281 4973995 0.000000e+00 5286.0
35 TraesCS1B01G442200 chr5B 88.377 3975 374 67 2587 6503 116346984 116343040 0.000000e+00 4700.0
36 TraesCS1B01G442200 chr5B 83.056 903 141 6 1192 2088 665939416 665940312 0.000000e+00 809.0
37 TraesCS1B01G442200 chr5B 82.556 900 141 12 1192 2086 665959028 665959916 0.000000e+00 778.0
38 TraesCS1B01G442200 chr5B 91.974 461 30 5 6946 7405 227792314 227791860 2.650000e-179 640.0
39 TraesCS1B01G442200 chr5B 86.435 575 51 20 6840 7405 451209947 451210503 9.660000e-169 604.0
40 TraesCS1B01G442200 chr5B 78.000 450 60 20 8042 8490 665941099 665941510 6.740000e-61 246.0
41 TraesCS1B01G442200 chr5B 73.971 680 139 31 5677 6337 105214456 105213796 3.140000e-59 241.0
42 TraesCS1B01G442200 chr5B 75.899 473 89 23 5883 6342 133367159 133367619 1.470000e-52 219.0
43 TraesCS1B01G442200 chr5B 77.607 326 52 12 16 330 6883552 6883237 2.500000e-40 178.0
44 TraesCS1B01G442200 chr5B 78.246 285 37 14 8043 8325 665961474 665961735 9.040000e-35 159.0
45 TraesCS1B01G442200 chr5B 74.214 318 58 11 17 330 64741434 64741137 2.570000e-20 111.0
46 TraesCS1B01G442200 chr5B 93.333 45 2 1 6485 6528 639185999 639186043 2.030000e-06 65.8
47 TraesCS1B01G442200 chr6B 94.205 3779 208 9 2585 6358 623167725 623163953 0.000000e+00 5755.0
48 TraesCS1B01G442200 chr6B 92.817 3884 234 27 2583 6441 347316559 347320422 0.000000e+00 5585.0
49 TraesCS1B01G442200 chr6B 92.051 1887 138 9 4736 6614 366404380 366402498 0.000000e+00 2643.0
50 TraesCS1B01G442200 chr6B 90.010 1001 88 8 1169 2165 106509668 106510660 0.000000e+00 1284.0
51 TraesCS1B01G442200 chr6B 87.130 575 51 17 6840 7405 366401951 366401391 1.590000e-176 630.0
52 TraesCS1B01G442200 chr6B 88.571 455 52 0 8041 8495 106511725 106512179 3.550000e-153 553.0
53 TraesCS1B01G442200 chr6B 82.341 487 51 19 7404 7879 106511125 106511587 2.940000e-104 390.0
54 TraesCS1B01G442200 chr6B 79.391 558 81 17 3 534 106507922 106508471 6.420000e-96 363.0
55 TraesCS1B01G442200 chr6B 88.043 92 10 1 2495 2586 106510996 106511086 3.320000e-19 108.0
56 TraesCS1B01G442200 chr1D 95.300 2596 81 12 1 2572 476571621 476569043 0.000000e+00 4080.0
57 TraesCS1B01G442200 chr1D 96.053 456 18 0 8041 8496 476568455 476568000 0.000000e+00 743.0
58 TraesCS1B01G442200 chr1D 94.925 335 17 0 7651 7985 476568788 476568454 7.740000e-145 525.0
59 TraesCS1B01G442200 chr1D 93.171 205 5 1 8494 8698 476567548 476567353 8.540000e-75 292.0
60 TraesCS1B01G442200 chr1D 88.835 206 12 3 7404 7598 476568991 476568786 8.720000e-60 243.0
61 TraesCS1B01G442200 chr1D 95.238 63 0 2 7981 8043 206102134 206102193 7.190000e-16 97.1
62 TraesCS1B01G442200 chrUn 89.411 1001 94 8 1169 2165 97782667 97783659 0.000000e+00 1251.0
63 TraesCS1B01G442200 chrUn 88.840 457 49 2 8041 8496 97784726 97785181 2.120000e-155 560.0
64 TraesCS1B01G442200 chrUn 80.680 559 73 20 3 534 97780958 97781508 1.360000e-107 401.0
65 TraesCS1B01G442200 chrUn 81.725 487 54 18 7404 7879 97784126 97784588 2.970000e-99 374.0
66 TraesCS1B01G442200 chrUn 90.217 92 7 1 2495 2586 97783998 97784087 1.530000e-22 119.0
67 TraesCS1B01G442200 chr5D 83.575 895 139 6 1192 2085 528803599 528804486 0.000000e+00 832.0
68 TraesCS1B01G442200 chr5D 83.204 905 137 9 1192 2088 528763063 528763960 0.000000e+00 815.0
69 TraesCS1B01G442200 chr5D 81.486 902 152 8 1192 2088 528748153 528749044 0.000000e+00 726.0
70 TraesCS1B01G442200 chr5D 82.119 453 64 11 8041 8492 528805689 528806125 1.070000e-98 372.0
71 TraesCS1B01G442200 chr5D 82.521 349 61 0 8144 8492 528753431 528753779 3.050000e-79 307.0
72 TraesCS1B01G442200 chr5D 79.012 162 29 4 17 176 4255490 4255332 1.190000e-18 106.0
73 TraesCS1B01G442200 chr5D 93.750 64 2 2 7982 8044 298759753 298759815 2.590000e-15 95.3
74 TraesCS1B01G442200 chr5D 90.141 71 5 1 8033 8101 528753345 528753415 3.340000e-14 91.6
75 TraesCS1B01G442200 chr5D 78.519 135 27 2 1865 1998 4334175 4334308 4.330000e-13 87.9
76 TraesCS1B01G442200 chr4B 89.492 571 40 14 6841 7405 558574922 558575478 0.000000e+00 704.0
77 TraesCS1B01G442200 chr4B 93.521 463 25 5 6946 7405 397225273 397224813 0.000000e+00 684.0
78 TraesCS1B01G442200 chr4B 92.457 464 29 5 6947 7405 397217367 397216905 0.000000e+00 658.0
79 TraesCS1B01G442200 chr4B 92.009 463 31 5 6946 7405 542957300 542957759 0.000000e+00 645.0
80 TraesCS1B01G442200 chr4B 77.710 489 76 28 6032 6503 128911862 128911390 1.440000e-67 268.0
81 TraesCS1B01G442200 chr4B 93.750 64 3 1 7980 8042 606305556 606305619 2.590000e-15 95.3
82 TraesCS1B01G442200 chr2A 79.448 326 48 15 6003 6318 420471887 420472203 6.840000e-51 213.0
83 TraesCS1B01G442200 chr7A 77.465 355 60 18 5974 6318 380093741 380093397 2.480000e-45 195.0
84 TraesCS1B01G442200 chr5A 78.616 318 49 15 17 328 4227503 4227807 8.910000e-45 193.0
85 TraesCS1B01G442200 chr4A 77.733 247 41 11 17 252 18121372 18121129 1.180000e-28 139.0
86 TraesCS1B01G442200 chr4A 95.238 63 2 1 7981 8042 295020397 295020459 2.000000e-16 99.0
87 TraesCS1B01G442200 chr4A 80.702 114 20 2 1910 2022 17894058 17893946 4.330000e-13 87.9
88 TraesCS1B01G442200 chr3A 82.857 140 19 4 6182 6318 616745055 616745192 4.260000e-23 121.0
89 TraesCS1B01G442200 chr2D 92.647 68 2 1 7980 8044 11793794 11793861 2.590000e-15 95.3
90 TraesCS1B01G442200 chr2D 93.651 63 3 1 7983 8044 565938351 565938413 9.300000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G442200 chr1B 662836166 662844863 8697 True 7825.000000 12216 100.000000 1 8698 2 chr1B.!!$R2 8697
1 TraesCS1B01G442200 chr1B 20431706 20435468 3762 False 5821.000000 5821 94.610000 2587 6345 1 chr1B.!!$F1 3758
2 TraesCS1B01G442200 chr1B 564982876 564986643 3767 True 5810.000000 5810 94.492000 2586 6357 1 chr1B.!!$R1 3771
3 TraesCS1B01G442200 chr3B 680105023 680108780 3757 True 5819.000000 5819 94.636000 2587 6342 1 chr3B.!!$R4 3755
4 TraesCS1B01G442200 chr3B 536320773 536325678 4905 False 3354.000000 6074 90.576000 2587 7405 2 chr3B.!!$F4 4818
5 TraesCS1B01G442200 chr3B 620464525 620469518 4993 False 3268.500000 5862 91.205000 2587 7405 2 chr3B.!!$F5 4818
6 TraesCS1B01G442200 chr3B 536330703 536331841 1138 False 1607.000000 1607 92.368000 5493 6615 1 chr3B.!!$F3 1122
7 TraesCS1B01G442200 chr3B 660375194 660375947 753 True 880.000000 880 87.879000 5677 6426 1 chr3B.!!$R3 749
8 TraesCS1B01G442200 chr3B 660367806 660368561 755 True 859.000000 859 87.352000 5677 6426 1 chr3B.!!$R2 749
9 TraesCS1B01G442200 chr3B 144967734 144968576 842 True 652.000000 652 81.008000 5677 6512 1 chr3B.!!$R1 835
10 TraesCS1B01G442200 chr7B 228533199 228536964 3765 False 5801.000000 5801 94.481000 2579 6342 1 chr7B.!!$F4 3763
11 TraesCS1B01G442200 chr7B 108735923 108736472 549 False 632.000000 632 87.391000 6840 7405 1 chr7B.!!$F2 565
12 TraesCS1B01G442200 chr7B 108743420 108743957 537 False 612.000000 612 87.074000 6850 7405 1 chr7B.!!$F3 555
13 TraesCS1B01G442200 chr2B 255415169 255418943 3774 False 5766.000000 5766 94.264000 2587 6358 1 chr2B.!!$F3 3771
14 TraesCS1B01G442200 chr2B 657088961 657092766 3805 True 5727.000000 5727 93.863000 2587 6387 1 chr2B.!!$R4 3800
15 TraesCS1B01G442200 chr2B 191517727 191521642 3915 False 5465.000000 5465 91.893000 2587 6503 1 chr2B.!!$F2 3916
16 TraesCS1B01G442200 chr2B 556165851 556166400 549 True 656.000000 656 88.235000 6850 7405 1 chr2B.!!$R3 555
17 TraesCS1B01G442200 chr2B 368280819 368281350 531 True 562.000000 562 85.846000 6850 7387 1 chr2B.!!$R1 537
18 TraesCS1B01G442200 chr5B 629443816 629447575 3759 True 5760.000000 5760 94.343000 2587 6343 1 chr5B.!!$R5 3756
19 TraesCS1B01G442200 chr5B 4970281 4973995 3714 False 5286.000000 5286 92.334000 2587 6317 1 chr5B.!!$F1 3730
20 TraesCS1B01G442200 chr5B 116343040 116346984 3944 True 4700.000000 4700 88.377000 2587 6503 1 chr5B.!!$R4 3916
21 TraesCS1B01G442200 chr5B 639174539 639186043 11504 False 3684.266667 5526 92.502333 2587 6528 3 chr5B.!!$F4 3941
22 TraesCS1B01G442200 chr5B 227785680 227792314 6634 True 3197.500000 5755 93.125500 2587 7405 2 chr5B.!!$R6 4818
23 TraesCS1B01G442200 chr5B 451209947 451210503 556 False 604.000000 604 86.435000 6840 7405 1 chr5B.!!$F3 565
24 TraesCS1B01G442200 chr5B 665939416 665941510 2094 False 527.500000 809 80.528000 1192 8490 2 chr5B.!!$F5 7298
25 TraesCS1B01G442200 chr5B 665959028 665961735 2707 False 468.500000 778 80.401000 1192 8325 2 chr5B.!!$F6 7133
26 TraesCS1B01G442200 chr5B 105213796 105214456 660 True 241.000000 241 73.971000 5677 6337 1 chr5B.!!$R3 660
27 TraesCS1B01G442200 chr6B 623163953 623167725 3772 True 5755.000000 5755 94.205000 2585 6358 1 chr6B.!!$R1 3773
28 TraesCS1B01G442200 chr6B 347316559 347320422 3863 False 5585.000000 5585 92.817000 2583 6441 1 chr6B.!!$F1 3858
29 TraesCS1B01G442200 chr6B 366401391 366404380 2989 True 1636.500000 2643 89.590500 4736 7405 2 chr6B.!!$R2 2669
30 TraesCS1B01G442200 chr6B 106507922 106512179 4257 False 539.600000 1284 85.671200 3 8495 5 chr6B.!!$F2 8492
31 TraesCS1B01G442200 chr1D 476567353 476571621 4268 True 1176.600000 4080 93.656800 1 8698 5 chr1D.!!$R1 8697
32 TraesCS1B01G442200 chrUn 97780958 97785181 4223 False 541.000000 1251 86.174600 3 8496 5 chrUn.!!$F1 8493
33 TraesCS1B01G442200 chr5D 528763063 528763960 897 False 815.000000 815 83.204000 1192 2088 1 chr5D.!!$F4 896
34 TraesCS1B01G442200 chr5D 528748153 528749044 891 False 726.000000 726 81.486000 1192 2088 1 chr5D.!!$F3 896
35 TraesCS1B01G442200 chr5D 528803599 528806125 2526 False 602.000000 832 82.847000 1192 8492 2 chr5D.!!$F6 7300
36 TraesCS1B01G442200 chr4B 558574922 558575478 556 False 704.000000 704 89.492000 6841 7405 1 chr4B.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 601 1.346395 TGCCATACGTGACTTTGGTCT 59.654 47.619 0.00 0.00 42.54 3.85 F
783 1019 1.724429 TTTCACGTGGTATTACCGCC 58.276 50.000 17.00 6.56 45.71 6.13 F
994 1243 1.830408 CCGGCAACTGGTCCCAAAA 60.830 57.895 0.00 0.00 0.00 2.44 F
1842 2496 2.283101 TGGGATGTGCTTGCCACC 60.283 61.111 0.00 0.00 44.01 4.61 F
2648 4053 0.419865 TCCCACCAAGGATAGACCCA 59.580 55.000 0.00 0.00 41.22 4.51 F
3065 4486 2.418197 GCGACTAAGCAAGTATGGTGGA 60.418 50.000 0.00 0.00 39.07 4.02 F
3185 4608 2.563620 ACCCAAAAACCGTGTTCACTTT 59.436 40.909 1.53 0.00 0.00 2.66 F
4792 6256 1.874231 ACGTTTCAACACACACACACA 59.126 42.857 0.00 0.00 0.00 3.72 F
5480 6953 0.330604 CCAGGGGCATGGATGGATAG 59.669 60.000 1.91 0.00 43.57 2.08 F
6001 7478 0.799534 GCAACATCACGATGCCTTGC 60.800 55.000 15.39 15.39 40.81 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2445 0.108377 TCACCGACACCCATTCATCG 60.108 55.000 0.00 0.00 0.00 3.84 R
2064 2721 0.725784 GTTCAATGAAGCACGTGCCG 60.726 55.000 35.51 17.42 43.38 5.69 R
2621 4026 0.765135 TCCTTGGTGGGACCTTCGAA 60.765 55.000 0.00 0.00 39.58 3.71 R
3722 5166 0.480252 AAAACTCCTCCAGCAAGGCT 59.520 50.000 0.00 0.00 40.77 4.58 R
4261 5717 0.038983 TTCGTTGCGATCGTGAGGAA 60.039 50.000 17.81 17.71 35.23 3.36 R
4408 5868 3.138884 TGCCTTGATGTGTTGCTCTTA 57.861 42.857 0.00 0.00 0.00 2.10 R
4824 6292 3.355378 TGCTTGCAATATGCCTAGTTGT 58.645 40.909 0.00 0.00 44.23 3.32 R
6372 7860 1.124780 TCACGAGGTTGACTTTCCCA 58.875 50.000 0.00 0.00 0.00 4.37 R
7016 9224 0.913205 TTCGGATGATTTTCCCCCGA 59.087 50.000 0.00 0.00 46.18 5.14 R
7781 16483 0.469494 TGTCAGCCATGCATATCGGT 59.531 50.000 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 4.101585 CCCAAGAGACAGGTATAATCTGCA 59.898 45.833 4.73 0.00 35.78 4.41
223 225 6.624423 TGGACTAGTACGGTTGTAGATTTTC 58.376 40.000 0.00 0.00 0.00 2.29
252 257 7.629437 GCTCCTCCTTTCCTATTCATTTTGTTC 60.629 40.741 0.00 0.00 0.00 3.18
255 260 8.031277 CCTCCTTTCCTATTCATTTTGTTCTTG 58.969 37.037 0.00 0.00 0.00 3.02
270 275 8.633075 TTTTGTTCTTGAGATGCAAAACTTAG 57.367 30.769 14.41 0.00 35.94 2.18
495 521 5.760253 TCTTGGCTTAGTTTGAGTCAGAAAG 59.240 40.000 0.00 0.00 29.31 2.62
518 544 4.453136 GCGTGAGGTTTCCATACTTTGTTA 59.547 41.667 0.00 0.00 0.00 2.41
547 601 1.346395 TGCCATACGTGACTTTGGTCT 59.654 47.619 0.00 0.00 42.54 3.85
560 614 6.935208 GTGACTTTGGTCTTGTATAAGGAGTT 59.065 38.462 0.00 0.00 42.54 3.01
617 673 6.554334 TTGAGTCATTGTAACTTAGTTGCC 57.446 37.500 8.00 0.00 0.00 4.52
677 733 1.953686 GTTCTACAACAAAGGCAGCCA 59.046 47.619 15.80 0.00 32.14 4.75
780 1016 4.093850 GGTGTCATTTCACGTGGTATTACC 59.906 45.833 17.00 11.80 39.00 2.85
783 1019 1.724429 TTTCACGTGGTATTACCGCC 58.276 50.000 17.00 6.56 45.71 6.13
831 1078 9.683069 TTTTGAAGAGCAGTTAATTGAAAGATC 57.317 29.630 1.56 0.00 0.00 2.75
839 1086 9.113838 AGCAGTTAATTGAAAGATCGTCAATAT 57.886 29.630 21.04 15.43 43.32 1.28
977 1226 2.092429 TGACAGATGTGCCCCTTTATCC 60.092 50.000 0.00 0.00 0.00 2.59
994 1243 1.830408 CCGGCAACTGGTCCCAAAA 60.830 57.895 0.00 0.00 0.00 2.44
1004 1654 4.746466 ACTGGTCCCAAAAATACAATGGA 58.254 39.130 0.00 0.00 36.27 3.41
1009 1659 6.155393 TGGTCCCAAAAATACAATGGATAACC 59.845 38.462 0.00 0.00 36.27 2.85
1146 1796 3.340814 ACATCGTCCATGAAAGAAGCT 57.659 42.857 0.00 0.00 36.21 3.74
1230 1880 4.042062 ACACAAGAGATCACATTCCTTCCA 59.958 41.667 0.00 0.00 0.00 3.53
1232 1882 5.006386 ACAAGAGATCACATTCCTTCCAAC 58.994 41.667 0.00 0.00 0.00 3.77
1739 2390 4.202151 GGAAATTGCAAAGAAGTGTGGAGT 60.202 41.667 1.71 0.00 0.00 3.85
1751 2402 5.540719 AGAAGTGTGGAGTTCTAGCTTTAGT 59.459 40.000 0.00 0.00 39.67 2.24
1791 2445 3.615224 ACATTGGGCAACATGGAATTC 57.385 42.857 0.00 0.00 39.74 2.17
1842 2496 2.283101 TGGGATGTGCTTGCCACC 60.283 61.111 0.00 0.00 44.01 4.61
1932 2586 6.587608 ACTTGAAGTTATGCTTTGCTTATTGC 59.412 34.615 0.00 0.00 37.59 3.56
2022 2679 4.299586 TGTTGAGCCATCAAGGACATTA 57.700 40.909 0.00 0.00 45.96 1.90
2385 3163 8.793592 GGTAGATCTTTGACACCTAATGTTTTT 58.206 33.333 0.00 0.00 43.56 1.94
2413 3191 9.982651 CTAATTTTAGCTTATCTACTGTGGCTA 57.017 33.333 0.00 0.00 0.00 3.93
2431 3209 9.950680 CTGTGGCTATTTTATAACTGTAAATGG 57.049 33.333 0.00 0.00 0.00 3.16
2551 3956 6.287525 TGTTCACATGTTTATGTCAGTGAGA 58.712 36.000 0.00 0.00 45.53 3.27
2579 3984 4.216257 TGTTTTGCCTTTGTCATAGCTCTC 59.784 41.667 0.00 0.00 0.00 3.20
2621 4026 2.241176 TGCGACCCTATCCAAAAGGAAT 59.759 45.455 0.00 0.00 36.08 3.01
2648 4053 0.419865 TCCCACCAAGGATAGACCCA 59.580 55.000 0.00 0.00 41.22 4.51
2875 4292 4.950050 TCGAAGAAGCAGAAGAAGAACTT 58.050 39.130 0.00 0.00 42.03 2.66
3065 4486 2.418197 GCGACTAAGCAAGTATGGTGGA 60.418 50.000 0.00 0.00 39.07 4.02
3153 4576 7.129425 AGAAGTGATCCTGAACTCCTACTTAT 58.871 38.462 0.00 0.00 0.00 1.73
3185 4608 2.563620 ACCCAAAAACCGTGTTCACTTT 59.436 40.909 1.53 0.00 0.00 2.66
4261 5717 2.961526 ACCAAGCATAGACGAACGAT 57.038 45.000 0.14 0.00 0.00 3.73
4387 5846 4.772624 AGACAAGACCACATGAAGCTACTA 59.227 41.667 0.00 0.00 0.00 1.82
4408 5868 5.597182 ACTAATGGCAAGAGATGATGCAAAT 59.403 36.000 6.06 0.00 0.00 2.32
4630 6090 4.396790 GGAGCTACGGTCTAGAAGATATGG 59.603 50.000 0.00 0.00 0.00 2.74
4792 6256 1.874231 ACGTTTCAACACACACACACA 59.126 42.857 0.00 0.00 0.00 3.72
4812 6279 7.554835 ACACACAATACAAGTTAAAGGACAAGA 59.445 33.333 0.00 0.00 0.00 3.02
4816 6284 9.131791 ACAATACAAGTTAAAGGACAAGATGTT 57.868 29.630 0.00 0.00 0.00 2.71
4824 6292 8.527810 AGTTAAAGGACAAGATGTTCAAAACAA 58.472 29.630 0.00 0.00 45.86 2.83
4992 6461 7.039784 ACACACATGGTAAGATTGCAAGTTATT 60.040 33.333 4.94 0.00 0.00 1.40
5269 6742 6.758416 GCAACTCACTACAGATCAATACATGA 59.242 38.462 0.00 0.00 43.67 3.07
5326 6799 4.015764 TGTGAAGCTAAGCATGGCAATAA 58.984 39.130 0.00 0.00 35.08 1.40
5414 6887 4.321156 GGCTGACAACAACATTATGAAGCA 60.321 41.667 0.00 0.00 32.67 3.91
5416 6889 5.117592 GCTGACAACAACATTATGAAGCAAC 59.882 40.000 0.00 0.00 31.93 4.17
5423 6896 6.449698 ACAACATTATGAAGCAACTTTGGAG 58.550 36.000 0.00 0.00 0.00 3.86
5424 6897 5.064441 ACATTATGAAGCAACTTTGGAGC 57.936 39.130 0.00 0.00 0.00 4.70
5425 6898 4.523943 ACATTATGAAGCAACTTTGGAGCA 59.476 37.500 0.00 0.00 0.00 4.26
5427 6900 3.655276 ATGAAGCAACTTTGGAGCAAG 57.345 42.857 0.00 0.00 0.00 4.01
5430 6903 2.071778 AGCAACTTTGGAGCAAGGAA 57.928 45.000 0.00 0.00 0.00 3.36
5432 6905 2.101415 AGCAACTTTGGAGCAAGGAAAC 59.899 45.455 0.00 0.00 0.00 2.78
5433 6906 2.159114 GCAACTTTGGAGCAAGGAAACA 60.159 45.455 0.00 0.00 0.00 2.83
5435 6908 3.801114 ACTTTGGAGCAAGGAAACAAC 57.199 42.857 0.00 0.00 0.00 3.32
5436 6909 3.096092 ACTTTGGAGCAAGGAAACAACA 58.904 40.909 0.00 0.00 0.00 3.33
5438 6911 3.799281 TTGGAGCAAGGAAACAACAAG 57.201 42.857 0.00 0.00 0.00 3.16
5439 6912 1.408702 TGGAGCAAGGAAACAACAAGC 59.591 47.619 0.00 0.00 0.00 4.01
5441 6914 2.884639 GGAGCAAGGAAACAACAAGCTA 59.115 45.455 0.00 0.00 0.00 3.32
5442 6915 3.304726 GGAGCAAGGAAACAACAAGCTAC 60.305 47.826 0.00 0.00 0.00 3.58
5445 6918 3.796717 GCAAGGAAACAACAAGCTACAAC 59.203 43.478 0.00 0.00 0.00 3.32
5461 6934 6.796629 GCTACAACAAGCTATAAATGCAAC 57.203 37.500 0.00 0.00 39.50 4.17
5463 6936 5.720371 ACAACAAGCTATAAATGCAACCA 57.280 34.783 0.00 0.00 0.00 3.67
5464 6937 5.713025 ACAACAAGCTATAAATGCAACCAG 58.287 37.500 0.00 0.00 0.00 4.00
5468 6941 1.341209 GCTATAAATGCAACCAGGGGC 59.659 52.381 0.00 0.00 0.00 5.80
5469 6942 2.665165 CTATAAATGCAACCAGGGGCA 58.335 47.619 10.21 10.21 45.23 5.36
5474 6947 2.042639 GCAACCAGGGGCATGGAT 60.043 61.111 14.25 0.06 43.57 3.41
5475 6948 2.428925 GCAACCAGGGGCATGGATG 61.429 63.158 14.25 13.11 43.57 3.51
5477 6950 1.935400 AACCAGGGGCATGGATGGA 60.935 57.895 14.25 0.00 43.57 3.41
5478 6951 1.298906 AACCAGGGGCATGGATGGAT 61.299 55.000 14.25 0.00 43.57 3.41
5479 6952 0.403304 ACCAGGGGCATGGATGGATA 60.403 55.000 14.25 0.00 43.57 2.59
5480 6953 0.330604 CCAGGGGCATGGATGGATAG 59.669 60.000 1.91 0.00 43.57 2.08
5482 6955 1.281287 CAGGGGCATGGATGGATAGAG 59.719 57.143 0.00 0.00 0.00 2.43
5485 6958 2.203584 GGGCATGGATGGATAGAGGAT 58.796 52.381 0.00 0.00 0.00 3.24
5486 6959 2.092538 GGGCATGGATGGATAGAGGATG 60.093 54.545 0.00 0.00 0.00 3.51
5488 6961 3.370315 GGCATGGATGGATAGAGGATGAC 60.370 52.174 0.00 0.00 0.00 3.06
5489 6962 3.262660 GCATGGATGGATAGAGGATGACA 59.737 47.826 0.00 0.00 0.00 3.58
5490 6963 4.080469 GCATGGATGGATAGAGGATGACAT 60.080 45.833 0.00 0.00 0.00 3.06
5491 6964 5.429130 CATGGATGGATAGAGGATGACATG 58.571 45.833 0.00 0.00 0.00 3.21
5493 6966 5.654370 TGGATGGATAGAGGATGACATGTA 58.346 41.667 0.00 0.00 0.00 2.29
5495 6968 6.558394 TGGATGGATAGAGGATGACATGTAAA 59.442 38.462 0.00 0.00 0.00 2.01
5496 6969 7.238305 TGGATGGATAGAGGATGACATGTAAAT 59.762 37.037 0.00 0.00 0.00 1.40
5497 6970 7.768120 GGATGGATAGAGGATGACATGTAAATC 59.232 40.741 0.00 5.37 0.00 2.17
5498 6971 7.616528 TGGATAGAGGATGACATGTAAATCA 57.383 36.000 18.11 5.56 0.00 2.57
5503 6976 9.685276 ATAGAGGATGACATGTAAATCAAAACA 57.315 29.630 18.11 2.68 0.00 2.83
5504 6977 8.585471 AGAGGATGACATGTAAATCAAAACAT 57.415 30.769 18.11 6.89 36.78 2.71
5544 7017 9.887629 CTCCAGATTATGCATAGAATGATTAGT 57.112 33.333 6.50 0.00 0.00 2.24
5551 7024 9.777297 TTATGCATAGAATGATTAGTAGCAACA 57.223 29.630 6.50 0.00 32.83 3.33
5552 7025 8.859236 ATGCATAGAATGATTAGTAGCAACAT 57.141 30.769 0.00 0.00 32.83 2.71
5554 7027 7.716560 TGCATAGAATGATTAGTAGCAACATGT 59.283 33.333 0.00 0.00 0.00 3.21
5568 7041 8.993121 AGTAGCAACATGTTTATATAGCATCAC 58.007 33.333 8.77 7.73 0.00 3.06
5569 7042 6.891624 AGCAACATGTTTATATAGCATCACG 58.108 36.000 8.77 0.00 0.00 4.35
5573 7046 9.882996 CAACATGTTTATATAGCATCACGAAAT 57.117 29.630 8.77 0.00 0.00 2.17
5587 7060 5.957842 TCACGAAATAACAAATTCAGCCT 57.042 34.783 0.00 0.00 0.00 4.58
5588 7061 7.471721 CATCACGAAATAACAAATTCAGCCTA 58.528 34.615 0.00 0.00 0.00 3.93
5589 7062 7.072177 TCACGAAATAACAAATTCAGCCTAG 57.928 36.000 0.00 0.00 0.00 3.02
5590 7063 5.739161 CACGAAATAACAAATTCAGCCTAGC 59.261 40.000 0.00 0.00 0.00 3.42
5591 7064 5.414454 ACGAAATAACAAATTCAGCCTAGCA 59.586 36.000 0.00 0.00 0.00 3.49
5595 7068 7.889589 AATAACAAATTCAGCCTAGCAAAAC 57.110 32.000 0.00 0.00 0.00 2.43
5596 7069 4.935352 ACAAATTCAGCCTAGCAAAACA 57.065 36.364 0.00 0.00 0.00 2.83
5597 7070 4.874970 ACAAATTCAGCCTAGCAAAACAG 58.125 39.130 0.00 0.00 0.00 3.16
5598 7071 3.582714 AATTCAGCCTAGCAAAACAGC 57.417 42.857 0.00 0.00 0.00 4.40
5599 7072 1.979855 TTCAGCCTAGCAAAACAGCA 58.020 45.000 0.00 0.00 36.85 4.41
5601 7074 1.608590 TCAGCCTAGCAAAACAGCAAC 59.391 47.619 0.00 0.00 36.85 4.17
5602 7075 1.337703 CAGCCTAGCAAAACAGCAACA 59.662 47.619 0.00 0.00 36.85 3.33
5603 7076 2.029649 CAGCCTAGCAAAACAGCAACAT 60.030 45.455 0.00 0.00 36.85 2.71
5605 7078 2.030007 GCCTAGCAAAACAGCAACATCA 60.030 45.455 0.00 0.00 36.85 3.07
5606 7079 3.367703 GCCTAGCAAAACAGCAACATCAT 60.368 43.478 0.00 0.00 36.85 2.45
5607 7080 4.171005 CCTAGCAAAACAGCAACATCATG 58.829 43.478 0.00 0.00 36.85 3.07
5608 7081 4.082625 CCTAGCAAAACAGCAACATCATGA 60.083 41.667 0.00 0.00 36.85 3.07
5610 7083 4.053295 AGCAAAACAGCAACATCATGAAC 58.947 39.130 0.00 0.00 36.85 3.18
5613 7086 2.592102 ACAGCAACATCATGAACCCT 57.408 45.000 0.00 0.00 0.00 4.34
5614 7087 3.719268 ACAGCAACATCATGAACCCTA 57.281 42.857 0.00 0.00 0.00 3.53
5615 7088 3.347216 ACAGCAACATCATGAACCCTAC 58.653 45.455 0.00 0.00 0.00 3.18
5616 7089 3.009473 ACAGCAACATCATGAACCCTACT 59.991 43.478 0.00 0.00 0.00 2.57
5618 7091 5.185454 CAGCAACATCATGAACCCTACTTA 58.815 41.667 0.00 0.00 0.00 2.24
5620 7093 5.648092 AGCAACATCATGAACCCTACTTAAC 59.352 40.000 0.00 0.00 0.00 2.01
5621 7094 5.414454 GCAACATCATGAACCCTACTTAACA 59.586 40.000 0.00 0.00 0.00 2.41
5623 7096 7.530010 CAACATCATGAACCCTACTTAACAAG 58.470 38.462 0.00 0.00 0.00 3.16
5624 7097 5.648092 ACATCATGAACCCTACTTAACAAGC 59.352 40.000 0.00 0.00 0.00 4.01
5625 7098 5.499004 TCATGAACCCTACTTAACAAGCT 57.501 39.130 0.00 0.00 0.00 3.74
5626 7099 5.488341 TCATGAACCCTACTTAACAAGCTC 58.512 41.667 0.00 0.00 0.00 4.09
5627 7100 3.921677 TGAACCCTACTTAACAAGCTCG 58.078 45.455 0.00 0.00 0.00 5.03
5629 7102 4.222145 TGAACCCTACTTAACAAGCTCGAT 59.778 41.667 0.00 0.00 0.00 3.59
5631 7104 4.756502 ACCCTACTTAACAAGCTCGATTC 58.243 43.478 0.00 0.00 0.00 2.52
5633 7106 4.567159 CCCTACTTAACAAGCTCGATTCAC 59.433 45.833 0.00 0.00 0.00 3.18
5634 7107 5.411781 CCTACTTAACAAGCTCGATTCACT 58.588 41.667 0.00 0.00 0.00 3.41
5635 7108 5.517054 CCTACTTAACAAGCTCGATTCACTC 59.483 44.000 0.00 0.00 0.00 3.51
5636 7109 4.883083 ACTTAACAAGCTCGATTCACTCA 58.117 39.130 0.00 0.00 0.00 3.41
5637 7110 4.686554 ACTTAACAAGCTCGATTCACTCAC 59.313 41.667 0.00 0.00 0.00 3.51
5639 7112 1.344438 ACAAGCTCGATTCACTCACCA 59.656 47.619 0.00 0.00 0.00 4.17
5640 7113 1.728971 CAAGCTCGATTCACTCACCAC 59.271 52.381 0.00 0.00 0.00 4.16
5643 7116 1.728971 GCTCGATTCACTCACCACAAG 59.271 52.381 0.00 0.00 0.00 3.16
5644 7117 2.868044 GCTCGATTCACTCACCACAAGT 60.868 50.000 0.00 0.00 0.00 3.16
5645 7118 2.989840 CTCGATTCACTCACCACAAGTC 59.010 50.000 0.00 0.00 0.00 3.01
5647 7120 3.006859 TCGATTCACTCACCACAAGTCAT 59.993 43.478 0.00 0.00 0.00 3.06
5649 7122 4.377738 CGATTCACTCACCACAAGTCATTG 60.378 45.833 0.00 0.00 42.46 2.82
5650 7123 2.221169 TCACTCACCACAAGTCATTGC 58.779 47.619 0.00 0.00 40.27 3.56
5651 7124 1.948834 CACTCACCACAAGTCATTGCA 59.051 47.619 0.00 0.00 40.27 4.08
5652 7125 2.555325 CACTCACCACAAGTCATTGCAT 59.445 45.455 0.00 0.00 40.27 3.96
5653 7126 2.555325 ACTCACCACAAGTCATTGCATG 59.445 45.455 0.00 0.00 40.27 4.06
5669 7142 7.813645 TCATTGCATGACAAGATAATCATAGC 58.186 34.615 0.00 0.00 42.87 2.97
5671 7144 7.754851 TTGCATGACAAGATAATCATAGCAT 57.245 32.000 0.00 0.00 38.23 3.79
5672 7145 7.373778 TGCATGACAAGATAATCATAGCATC 57.626 36.000 0.00 0.00 35.92 3.91
5673 7146 6.938030 TGCATGACAAGATAATCATAGCATCA 59.062 34.615 0.00 0.00 35.92 3.07
5674 7147 7.610305 TGCATGACAAGATAATCATAGCATCAT 59.390 33.333 0.00 0.00 35.92 2.45
5675 7148 8.123575 GCATGACAAGATAATCATAGCATCATC 58.876 37.037 0.00 0.00 33.73 2.92
5769 7244 5.046448 AGCTTGGCCAAATTGAATAACATGA 60.046 36.000 20.91 0.00 0.00 3.07
5810 7286 5.215160 ACATTTTGAAGCAAAAGTAGAGCG 58.785 37.500 10.56 0.00 44.72 5.03
5823 7299 3.262420 AGTAGAGCGCGAAAATGACATT 58.738 40.909 12.10 0.00 0.00 2.71
5999 7476 0.806868 CAGCAACATCACGATGCCTT 59.193 50.000 6.94 0.00 44.14 4.35
6001 7478 0.799534 GCAACATCACGATGCCTTGC 60.800 55.000 15.39 15.39 40.81 4.01
6372 7860 2.257207 TCGGGAGTCATTTTCAGAGGT 58.743 47.619 0.00 0.00 0.00 3.85
7008 9206 2.754254 GGCGCGGAGGGGAAAAAT 60.754 61.111 8.83 0.00 42.39 1.82
7016 9224 3.437213 CGGAGGGGAAAAATTAGGGTTT 58.563 45.455 0.00 0.00 0.00 3.27
7017 9225 3.446161 CGGAGGGGAAAAATTAGGGTTTC 59.554 47.826 0.00 0.00 33.78 2.78
7018 9226 3.446161 GGAGGGGAAAAATTAGGGTTTCG 59.554 47.826 0.00 0.00 35.08 3.46
7019 9227 3.437213 AGGGGAAAAATTAGGGTTTCGG 58.563 45.455 0.00 0.00 35.08 4.30
7020 9228 2.498481 GGGGAAAAATTAGGGTTTCGGG 59.502 50.000 0.00 0.00 35.08 5.14
7021 9229 2.498481 GGGAAAAATTAGGGTTTCGGGG 59.502 50.000 0.00 0.00 35.08 5.73
7022 9230 2.498481 GGAAAAATTAGGGTTTCGGGGG 59.502 50.000 0.00 0.00 35.08 5.40
7023 9231 3.433343 GAAAAATTAGGGTTTCGGGGGA 58.567 45.455 0.00 0.00 0.00 4.81
7024 9232 3.546429 AAAATTAGGGTTTCGGGGGAA 57.454 42.857 0.00 0.00 0.00 3.97
7025 9233 3.546429 AAATTAGGGTTTCGGGGGAAA 57.454 42.857 0.00 0.00 0.00 3.13
7026 9234 3.546429 AATTAGGGTTTCGGGGGAAAA 57.454 42.857 0.00 0.00 0.00 2.29
7096 9309 1.556911 GGAGAGTCCAAATGAGGAGCA 59.443 52.381 0.00 0.00 38.64 4.26
7160 9373 0.249868 GGGAGTTTGCTGGGTTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
7198 9413 1.683385 GTTGGGCTGCAAAGAGAAAGT 59.317 47.619 0.50 0.00 0.00 2.66
7272 9492 0.390124 ACGAAACTTGACAGGCGGTA 59.610 50.000 0.00 0.00 0.00 4.02
7329 9549 2.683362 GGGCCATTCCGAGAAAGTTTAG 59.317 50.000 4.39 0.00 34.94 1.85
7440 10204 8.612619 TGAGATTAGTCTGTTTGTTGAGAAAAC 58.387 33.333 0.00 0.00 37.90 2.43
7466 15140 7.987750 TTGCAAACTAACATTAGTGTGGATA 57.012 32.000 19.15 8.36 45.06 2.59
7470 15144 9.326413 GCAAACTAACATTAGTGTGGATATACT 57.674 33.333 19.15 0.00 45.16 2.12
7525 16200 9.359653 ACTCCCTCCATTCTCATTATATTTTTG 57.640 33.333 0.00 0.00 0.00 2.44
7536 16224 8.623903 TCTCATTATATTTTTGGACATCAGTGC 58.376 33.333 0.00 0.00 36.51 4.40
7701 16403 4.216902 TCATTGTTCATGAAGCCTGACAAG 59.783 41.667 8.80 4.13 39.11 3.16
7732 16434 1.108776 GCATGACCTGGTGCATGATT 58.891 50.000 28.11 4.66 43.43 2.57
7781 16483 9.488762 TGAAATTAACATAGAGAGTCCTTCCTA 57.511 33.333 0.00 0.00 0.00 2.94
7831 16599 7.330900 AGAAAGCTATTCAAGTCATCAATGG 57.669 36.000 10.08 0.00 0.00 3.16
7842 16610 2.360165 GTCATCAATGGATCCACTTGCC 59.640 50.000 18.99 0.00 0.00 4.52
7845 16613 3.104519 TCAATGGATCCACTTGCCAAT 57.895 42.857 18.99 0.00 34.95 3.16
7861 16629 9.079833 CACTTGCCAATTTATTTAAGTCATCAG 57.920 33.333 0.00 0.00 0.00 2.90
7915 16689 1.753930 TATCGACCGTGGCTACTTGA 58.246 50.000 0.00 0.00 0.00 3.02
7979 16753 6.265196 TGTGTCTTGGATTTAAGCAGATGTTT 59.735 34.615 0.00 0.00 0.00 2.83
7982 16756 7.147976 GTCTTGGATTTAAGCAGATGTTTTGT 58.852 34.615 0.00 0.00 0.00 2.83
7983 16757 8.296713 GTCTTGGATTTAAGCAGATGTTTTGTA 58.703 33.333 0.00 0.00 0.00 2.41
7984 16758 8.296713 TCTTGGATTTAAGCAGATGTTTTGTAC 58.703 33.333 0.00 0.00 0.00 2.90
7985 16759 7.759489 TGGATTTAAGCAGATGTTTTGTACT 57.241 32.000 0.00 0.00 0.00 2.73
7986 16760 7.816640 TGGATTTAAGCAGATGTTTTGTACTC 58.183 34.615 0.00 0.00 0.00 2.59
7987 16761 7.094377 TGGATTTAAGCAGATGTTTTGTACTCC 60.094 37.037 0.00 0.00 0.00 3.85
7988 16762 6.569179 TTTAAGCAGATGTTTTGTACTCCC 57.431 37.500 0.00 0.00 0.00 4.30
7989 16763 4.373156 AAGCAGATGTTTTGTACTCCCT 57.627 40.909 0.00 0.00 0.00 4.20
7990 16764 3.944087 AGCAGATGTTTTGTACTCCCTC 58.056 45.455 0.00 0.00 0.00 4.30
7991 16765 3.010420 GCAGATGTTTTGTACTCCCTCC 58.990 50.000 0.00 0.00 0.00 4.30
7992 16766 3.262420 CAGATGTTTTGTACTCCCTCCG 58.738 50.000 0.00 0.00 0.00 4.63
7993 16767 2.904434 AGATGTTTTGTACTCCCTCCGT 59.096 45.455 0.00 0.00 0.00 4.69
7994 16768 4.081862 CAGATGTTTTGTACTCCCTCCGTA 60.082 45.833 0.00 0.00 0.00 4.02
7995 16769 4.529377 AGATGTTTTGTACTCCCTCCGTAA 59.471 41.667 0.00 0.00 0.00 3.18
7996 16770 4.686191 TGTTTTGTACTCCCTCCGTAAA 57.314 40.909 0.00 0.00 0.00 2.01
7997 16771 4.379652 TGTTTTGTACTCCCTCCGTAAAC 58.620 43.478 0.00 0.00 0.00 2.01
7998 16772 4.101430 TGTTTTGTACTCCCTCCGTAAACT 59.899 41.667 0.00 0.00 0.00 2.66
7999 16773 5.304101 TGTTTTGTACTCCCTCCGTAAACTA 59.696 40.000 0.00 0.00 0.00 2.24
8000 16774 6.183360 TGTTTTGTACTCCCTCCGTAAACTAA 60.183 38.462 0.00 0.00 0.00 2.24
8001 16775 6.418057 TTTGTACTCCCTCCGTAAACTAAA 57.582 37.500 0.00 0.00 0.00 1.85
8002 16776 5.649782 TGTACTCCCTCCGTAAACTAAAG 57.350 43.478 0.00 0.00 0.00 1.85
8003 16777 5.079643 TGTACTCCCTCCGTAAACTAAAGT 58.920 41.667 0.00 0.00 0.00 2.66
8004 16778 4.532314 ACTCCCTCCGTAAACTAAAGTG 57.468 45.455 0.00 0.00 0.00 3.16
8005 16779 4.154942 ACTCCCTCCGTAAACTAAAGTGA 58.845 43.478 0.00 0.00 0.00 3.41
8006 16780 4.776308 ACTCCCTCCGTAAACTAAAGTGAT 59.224 41.667 0.00 0.00 0.00 3.06
8007 16781 5.105432 ACTCCCTCCGTAAACTAAAGTGATC 60.105 44.000 0.00 0.00 0.00 2.92
8008 16782 5.021458 TCCCTCCGTAAACTAAAGTGATCT 58.979 41.667 0.00 0.00 0.00 2.75
8009 16783 6.189859 TCCCTCCGTAAACTAAAGTGATCTA 58.810 40.000 0.00 0.00 0.00 1.98
8010 16784 6.664816 TCCCTCCGTAAACTAAAGTGATCTAA 59.335 38.462 0.00 0.00 0.00 2.10
8011 16785 7.178983 TCCCTCCGTAAACTAAAGTGATCTAAA 59.821 37.037 0.00 0.00 0.00 1.85
8012 16786 7.277319 CCCTCCGTAAACTAAAGTGATCTAAAC 59.723 40.741 0.00 0.00 0.00 2.01
8013 16787 7.008992 CCTCCGTAAACTAAAGTGATCTAAACG 59.991 40.741 0.00 0.00 0.00 3.60
8014 16788 6.308766 TCCGTAAACTAAAGTGATCTAAACGC 59.691 38.462 0.00 0.00 0.00 4.84
8015 16789 6.309737 CCGTAAACTAAAGTGATCTAAACGCT 59.690 38.462 0.00 0.00 0.00 5.07
8016 16790 7.381839 CGTAAACTAAAGTGATCTAAACGCTC 58.618 38.462 0.00 0.00 0.00 5.03
8017 16791 7.272948 CGTAAACTAAAGTGATCTAAACGCTCT 59.727 37.037 0.00 0.00 0.00 4.09
8018 16792 7.964604 AAACTAAAGTGATCTAAACGCTCTT 57.035 32.000 0.00 0.00 0.00 2.85
8020 16794 9.654663 AAACTAAAGTGATCTAAACGCTCTTAT 57.345 29.630 0.00 0.00 0.00 1.73
8032 16806 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
8033 16807 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
8034 16808 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
8035 16809 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
8036 16810 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
8037 16811 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
8038 16812 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
8039 16813 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
8159 16933 5.571285 TCCGCCAGAGTCTATAATGATACT 58.429 41.667 0.00 0.00 0.00 2.12
8213 16987 7.871973 CCAATATTTGAATTTATCATTCCGCCA 59.128 33.333 0.00 0.00 38.03 5.69
8218 16992 6.713762 TGAATTTATCATTCCGCCAAAGAT 57.286 33.333 0.00 0.00 31.50 2.40
8343 17117 4.946784 AAGTTTCATTGACTGTATCGGC 57.053 40.909 0.00 0.00 0.00 5.54
8362 17136 0.995024 CACCCTTCCCAATCTGGAGT 59.005 55.000 0.00 0.00 40.96 3.85
8384 17158 1.747355 GCTGGACATGTCTTGGAATGG 59.253 52.381 24.50 7.84 0.00 3.16
8426 17200 7.572168 GCCTGAAAGTTTTAGCAGACTAAAGAG 60.572 40.741 1.89 0.00 46.36 2.85
8525 17753 4.978083 ATTGGCTAAACTTGAGCATCTG 57.022 40.909 0.31 0.00 41.98 2.90
8562 17790 4.211920 CCCCAACTTGAGGTTTAAACTGA 58.788 43.478 17.50 0.00 35.74 3.41
8642 17870 2.918248 TGTGCCTGGAACACAGCT 59.082 55.556 2.48 0.00 46.14 4.24
8643 17871 1.526686 TGTGCCTGGAACACAGCTG 60.527 57.895 13.48 13.48 46.14 4.24
8644 17872 2.595463 TGCCTGGAACACAGCTGC 60.595 61.111 15.27 0.00 46.14 5.25
8645 17873 2.282040 GCCTGGAACACAGCTGCT 60.282 61.111 15.27 0.00 46.14 4.24
8646 17874 1.900498 GCCTGGAACACAGCTGCTT 60.900 57.895 15.27 5.13 46.14 3.91
8647 17875 1.860484 GCCTGGAACACAGCTGCTTC 61.860 60.000 15.27 14.43 46.14 3.86
8648 17876 1.239968 CCTGGAACACAGCTGCTTCC 61.240 60.000 26.62 26.62 46.14 3.46
8649 17877 0.250640 CTGGAACACAGCTGCTTCCT 60.251 55.000 30.26 6.63 40.97 3.36
8650 17878 0.250467 TGGAACACAGCTGCTTCCTC 60.250 55.000 30.26 15.58 35.41 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.111613 AGGATATCTGCTACAGAGGGCT 59.888 50.000 2.05 0.00 44.08 5.19
197 198 6.388435 AATCTACAACCGTACTAGTCCATC 57.612 41.667 0.00 0.00 0.00 3.51
223 225 2.774234 TGAATAGGAAAGGAGGAGCTGG 59.226 50.000 0.00 0.00 0.00 4.85
270 275 7.661968 AGGGAAGAATTAAAAAGAAGCAGAAC 58.338 34.615 0.00 0.00 0.00 3.01
360 385 4.662961 TCACACGGCAGAGCACGG 62.663 66.667 0.00 0.00 0.00 4.94
410 435 1.336424 GCTATCCTCTAAGCCAGTCGC 60.336 57.143 0.00 0.00 32.40 5.19
495 521 2.812011 ACAAAGTATGGAAACCTCACGC 59.188 45.455 0.00 0.00 0.00 5.34
547 601 8.059461 TCCATCAGACTAGAACTCCTTATACAA 58.941 37.037 0.00 0.00 0.00 2.41
560 614 6.181190 CGGTATCCTAATCCATCAGACTAGA 58.819 44.000 0.00 0.00 0.00 2.43
617 673 5.899547 AGAGGGGCCTTTTCCTTTATTTATG 59.100 40.000 0.84 0.00 32.74 1.90
677 733 6.512091 GCAAAATGCAAGACAATGAACACATT 60.512 34.615 0.00 0.00 44.26 2.71
752 988 2.217750 CACGTGAAATGACACCTTGGA 58.782 47.619 10.90 0.00 37.48 3.53
783 1019 0.606401 TCAAGCCGGCAGAGGAAAAG 60.606 55.000 31.54 6.95 0.00 2.27
831 1078 9.847706 ATATGTGAGTAAGCTAAGATATTGACG 57.152 33.333 0.00 0.00 0.00 4.35
864 1111 6.780198 AGTCTCCTAACTCTCTAGGATGAT 57.220 41.667 0.00 0.00 45.18 2.45
865 1112 7.293771 ACATAGTCTCCTAACTCTCTAGGATGA 59.706 40.741 0.00 0.00 45.18 2.92
866 1113 7.390440 CACATAGTCTCCTAACTCTCTAGGATG 59.610 44.444 0.00 0.00 45.18 3.51
977 1226 0.678950 ATTTTTGGGACCAGTTGCCG 59.321 50.000 0.00 0.00 39.06 5.69
994 1243 6.317893 GTCTTCAACGGGTTATCCATTGTATT 59.682 38.462 0.00 0.00 34.76 1.89
1029 1679 6.603237 TCATTTGTTATATTGTCCTGCTCG 57.397 37.500 0.00 0.00 0.00 5.03
1146 1796 5.811190 TCTTTGGTCCTTCCGATGATTAAA 58.189 37.500 0.00 0.00 39.52 1.52
1230 1880 4.834496 CCAATGCCTCCAATACCATATGTT 59.166 41.667 1.24 0.00 0.00 2.71
1232 1882 3.765511 CCCAATGCCTCCAATACCATATG 59.234 47.826 0.00 0.00 0.00 1.78
1276 1926 8.413309 TCTTTGAACTGGAGATCATTGAAAAT 57.587 30.769 0.00 0.00 0.00 1.82
1364 2015 7.549134 TCTTGTTACCAGATAGCTGTGTTATTG 59.451 37.037 7.31 0.00 40.63 1.90
1678 2329 1.552337 CTGCACTCTTTCAGCCCTAGA 59.448 52.381 0.00 0.00 0.00 2.43
1773 2424 2.455557 TCGAATTCCATGTTGCCCAAT 58.544 42.857 0.00 0.00 0.00 3.16
1791 2445 0.108377 TCACCGACACCCATTCATCG 60.108 55.000 0.00 0.00 0.00 3.84
1842 2496 5.407691 CACATGATCAGGTGAATATTCTCCG 59.592 44.000 31.44 19.63 45.01 4.63
2064 2721 0.725784 GTTCAATGAAGCACGTGCCG 60.726 55.000 35.51 17.42 43.38 5.69
2385 3163 9.760077 GCCACAGTAGATAAGCTAAAATTAGTA 57.240 33.333 0.00 0.00 33.32 1.82
2386 3164 8.487028 AGCCACAGTAGATAAGCTAAAATTAGT 58.513 33.333 0.00 0.00 33.32 2.24
2387 3165 8.894768 AGCCACAGTAGATAAGCTAAAATTAG 57.105 34.615 0.00 0.00 0.00 1.73
2405 3183 9.950680 CCATTTACAGTTATAAAATAGCCACAG 57.049 33.333 0.00 0.00 0.00 3.66
2551 3956 2.733956 TGACAAAGGCAAAACAGGTCT 58.266 42.857 0.00 0.00 0.00 3.85
2579 3984 1.781025 ATTGGGCGTGACACACAACG 61.781 55.000 6.37 0.00 33.40 4.10
2621 4026 0.765135 TCCTTGGTGGGACCTTCGAA 60.765 55.000 0.00 0.00 39.58 3.71
2648 4053 4.685628 CCTTGCAAAAGCGTTTCAATATGT 59.314 37.500 0.00 0.00 0.00 2.29
2875 4292 0.871722 AGCGATGTTTGCTTGCGTTA 59.128 45.000 0.00 0.00 40.48 3.18
3153 4576 4.159879 ACGGTTTTTGGGTTATGTTTGACA 59.840 37.500 0.00 0.00 0.00 3.58
3638 5080 5.420409 CCGAGGGTCATCTTTATTATAGCC 58.580 45.833 0.00 0.00 0.00 3.93
3639 5081 5.420409 CCCGAGGGTCATCTTTATTATAGC 58.580 45.833 0.00 0.00 0.00 2.97
3722 5166 0.480252 AAAACTCCTCCAGCAAGGCT 59.520 50.000 0.00 0.00 40.77 4.58
4045 5495 5.125367 ACCTCTAACCTTTGACACCTTTT 57.875 39.130 0.00 0.00 0.00 2.27
4261 5717 0.038983 TTCGTTGCGATCGTGAGGAA 60.039 50.000 17.81 17.71 35.23 3.36
4387 5846 6.322969 TCTTATTTGCATCATCTCTTGCCATT 59.677 34.615 0.00 0.00 38.08 3.16
4408 5868 3.138884 TGCCTTGATGTGTTGCTCTTA 57.861 42.857 0.00 0.00 0.00 2.10
4630 6090 3.873952 TGCCATGTTTAACTTGTTTTGCC 59.126 39.130 9.56 0.00 0.00 4.52
4660 6120 4.300803 TGCTTGATGTTTGAGTGCATTTC 58.699 39.130 0.00 0.00 0.00 2.17
4775 6235 5.629079 TGTATTGTGTGTGTGTGTTGAAA 57.371 34.783 0.00 0.00 0.00 2.69
4792 6256 9.349713 TGAACATCTTGTCCTTTAACTTGTATT 57.650 29.630 0.00 0.00 0.00 1.89
4812 6279 5.590530 TGCCTAGTTGTTGTTTTGAACAT 57.409 34.783 0.00 0.00 41.79 2.71
4816 6284 6.155827 GCAATATGCCTAGTTGTTGTTTTGA 58.844 36.000 0.00 0.00 37.42 2.69
4824 6292 3.355378 TGCTTGCAATATGCCTAGTTGT 58.645 40.909 0.00 0.00 44.23 3.32
4992 6461 9.677567 GTTATTTTCTGCAAAGTCTGAATTGTA 57.322 29.630 0.00 0.00 0.00 2.41
5269 6742 1.688197 CTGTTGGTTTCCTTGCCATGT 59.312 47.619 0.00 0.00 34.37 3.21
5326 6799 1.064463 CCATGCACCCTATGGACTTGT 60.064 52.381 0.00 0.00 46.42 3.16
5414 6887 3.513515 TGTTGTTTCCTTGCTCCAAAGTT 59.486 39.130 0.00 0.00 0.00 2.66
5416 6889 3.799281 TGTTGTTTCCTTGCTCCAAAG 57.201 42.857 0.00 0.00 0.00 2.77
5423 6896 3.708563 TGTAGCTTGTTGTTTCCTTGC 57.291 42.857 0.00 0.00 0.00 4.01
5424 6897 4.992688 TGTTGTAGCTTGTTGTTTCCTTG 58.007 39.130 0.00 0.00 0.00 3.61
5425 6898 5.650543 CTTGTTGTAGCTTGTTGTTTCCTT 58.349 37.500 0.00 0.00 0.00 3.36
5427 6900 3.796717 GCTTGTTGTAGCTTGTTGTTTCC 59.203 43.478 0.00 0.00 38.15 3.13
5438 6911 5.743872 GGTTGCATTTATAGCTTGTTGTAGC 59.256 40.000 0.00 0.00 41.53 3.58
5439 6912 6.851609 TGGTTGCATTTATAGCTTGTTGTAG 58.148 36.000 0.00 0.00 0.00 2.74
5441 6914 5.336690 CCTGGTTGCATTTATAGCTTGTTGT 60.337 40.000 0.00 0.00 0.00 3.32
5442 6915 5.104374 CCTGGTTGCATTTATAGCTTGTTG 58.896 41.667 0.00 0.00 0.00 3.33
5445 6918 3.068590 CCCCTGGTTGCATTTATAGCTTG 59.931 47.826 0.00 0.00 0.00 4.01
5451 6924 1.764134 CATGCCCCTGGTTGCATTTAT 59.236 47.619 15.78 0.00 45.52 1.40
5452 6925 1.193323 CATGCCCCTGGTTGCATTTA 58.807 50.000 15.78 0.00 45.52 1.40
5453 6926 1.555477 CCATGCCCCTGGTTGCATTT 61.555 55.000 15.78 0.00 45.52 2.32
5457 6930 2.042639 ATCCATGCCCCTGGTTGC 60.043 61.111 0.00 0.00 37.57 4.17
5458 6931 1.759299 CCATCCATGCCCCTGGTTG 60.759 63.158 0.00 0.00 37.57 3.77
5459 6932 1.298906 ATCCATCCATGCCCCTGGTT 61.299 55.000 0.00 0.00 37.57 3.67
5461 6934 0.330604 CTATCCATCCATGCCCCTGG 59.669 60.000 0.00 0.00 37.66 4.45
5463 6936 1.666365 CTCTATCCATCCATGCCCCT 58.334 55.000 0.00 0.00 0.00 4.79
5464 6937 0.622665 CCTCTATCCATCCATGCCCC 59.377 60.000 0.00 0.00 0.00 5.80
5468 6941 5.045797 ACATGTCATCCTCTATCCATCCATG 60.046 44.000 0.00 0.00 33.88 3.66
5469 6942 5.099378 ACATGTCATCCTCTATCCATCCAT 58.901 41.667 0.00 0.00 0.00 3.41
5470 6943 4.496540 ACATGTCATCCTCTATCCATCCA 58.503 43.478 0.00 0.00 0.00 3.41
5471 6944 6.611613 TTACATGTCATCCTCTATCCATCC 57.388 41.667 0.00 0.00 0.00 3.51
5474 6947 7.616528 TGATTTACATGTCATCCTCTATCCA 57.383 36.000 0.00 0.00 0.00 3.41
5475 6948 8.908786 TTTGATTTACATGTCATCCTCTATCC 57.091 34.615 0.00 0.00 0.00 2.59
5477 6950 9.685276 TGTTTTGATTTACATGTCATCCTCTAT 57.315 29.630 0.00 0.00 0.00 1.98
5478 6951 9.685276 ATGTTTTGATTTACATGTCATCCTCTA 57.315 29.630 0.00 0.00 33.90 2.43
5479 6952 8.464404 CATGTTTTGATTTACATGTCATCCTCT 58.536 33.333 0.00 0.00 44.08 3.69
5480 6953 8.624701 CATGTTTTGATTTACATGTCATCCTC 57.375 34.615 0.00 0.00 44.08 3.71
5518 6991 9.887629 ACTAATCATTCTATGCATAATCTGGAG 57.112 33.333 8.00 0.00 0.00 3.86
5525 6998 9.777297 TGTTGCTACTAATCATTCTATGCATAA 57.223 29.630 8.00 0.00 0.00 1.90
5527 7000 8.727910 CATGTTGCTACTAATCATTCTATGCAT 58.272 33.333 3.79 3.79 0.00 3.96
5528 7001 7.716560 ACATGTTGCTACTAATCATTCTATGCA 59.283 33.333 0.00 0.00 0.00 3.96
5529 7002 8.092521 ACATGTTGCTACTAATCATTCTATGC 57.907 34.615 0.00 0.00 0.00 3.14
5542 7015 8.993121 GTGATGCTATATAAACATGTTGCTACT 58.007 33.333 12.82 0.00 0.00 2.57
5543 7016 7.952101 CGTGATGCTATATAAACATGTTGCTAC 59.048 37.037 12.82 9.50 0.00 3.58
5544 7017 7.870445 TCGTGATGCTATATAAACATGTTGCTA 59.130 33.333 12.82 7.31 0.00 3.49
5545 7018 6.705825 TCGTGATGCTATATAAACATGTTGCT 59.294 34.615 12.82 5.13 0.00 3.91
5546 7019 6.887368 TCGTGATGCTATATAAACATGTTGC 58.113 36.000 12.82 10.48 0.00 4.17
5547 7020 9.882996 ATTTCGTGATGCTATATAAACATGTTG 57.117 29.630 12.82 0.00 0.00 3.33
5559 7032 7.645340 GCTGAATTTGTTATTTCGTGATGCTAT 59.355 33.333 0.00 0.00 0.00 2.97
5560 7033 6.966632 GCTGAATTTGTTATTTCGTGATGCTA 59.033 34.615 0.00 0.00 0.00 3.49
5561 7034 5.801947 GCTGAATTTGTTATTTCGTGATGCT 59.198 36.000 0.00 0.00 0.00 3.79
5562 7035 5.004726 GGCTGAATTTGTTATTTCGTGATGC 59.995 40.000 0.00 0.00 0.00 3.91
5563 7036 6.324819 AGGCTGAATTTGTTATTTCGTGATG 58.675 36.000 0.00 0.00 0.00 3.07
5564 7037 6.515272 AGGCTGAATTTGTTATTTCGTGAT 57.485 33.333 0.00 0.00 0.00 3.06
5565 7038 5.957842 AGGCTGAATTTGTTATTTCGTGA 57.042 34.783 0.00 0.00 0.00 4.35
5566 7039 5.739161 GCTAGGCTGAATTTGTTATTTCGTG 59.261 40.000 0.00 0.00 0.00 4.35
5567 7040 5.414454 TGCTAGGCTGAATTTGTTATTTCGT 59.586 36.000 0.00 0.00 0.00 3.85
5568 7041 5.879237 TGCTAGGCTGAATTTGTTATTTCG 58.121 37.500 0.00 0.00 0.00 3.46
5569 7042 8.435430 GTTTTGCTAGGCTGAATTTGTTATTTC 58.565 33.333 0.00 0.00 0.00 2.17
5573 7046 6.398234 TGTTTTGCTAGGCTGAATTTGTTA 57.602 33.333 0.00 0.00 0.00 2.41
5574 7047 5.275067 TGTTTTGCTAGGCTGAATTTGTT 57.725 34.783 0.00 0.00 0.00 2.83
5576 7049 3.676646 GCTGTTTTGCTAGGCTGAATTTG 59.323 43.478 0.00 0.00 0.00 2.32
5577 7050 3.321682 TGCTGTTTTGCTAGGCTGAATTT 59.678 39.130 0.00 0.00 0.00 1.82
5580 7053 1.979855 TGCTGTTTTGCTAGGCTGAA 58.020 45.000 0.00 0.00 0.00 3.02
5582 7055 1.337703 TGTTGCTGTTTTGCTAGGCTG 59.662 47.619 0.00 0.00 0.00 4.85
5583 7056 1.691196 TGTTGCTGTTTTGCTAGGCT 58.309 45.000 0.00 0.00 0.00 4.58
5584 7057 2.030007 TGATGTTGCTGTTTTGCTAGGC 60.030 45.455 0.00 0.00 0.00 3.93
5587 7060 5.221880 GTTCATGATGTTGCTGTTTTGCTA 58.778 37.500 0.00 0.00 0.00 3.49
5588 7061 4.053295 GTTCATGATGTTGCTGTTTTGCT 58.947 39.130 0.00 0.00 0.00 3.91
5589 7062 3.184986 GGTTCATGATGTTGCTGTTTTGC 59.815 43.478 0.00 0.00 0.00 3.68
5590 7063 3.742369 GGGTTCATGATGTTGCTGTTTTG 59.258 43.478 0.00 0.00 0.00 2.44
5591 7064 3.642848 AGGGTTCATGATGTTGCTGTTTT 59.357 39.130 0.00 0.00 0.00 2.43
5595 7068 3.614092 AGTAGGGTTCATGATGTTGCTG 58.386 45.455 0.00 0.00 0.00 4.41
5596 7069 4.307032 AAGTAGGGTTCATGATGTTGCT 57.693 40.909 0.00 0.00 0.00 3.91
5597 7070 5.414454 TGTTAAGTAGGGTTCATGATGTTGC 59.586 40.000 0.00 0.00 0.00 4.17
5598 7071 7.447374 TTGTTAAGTAGGGTTCATGATGTTG 57.553 36.000 0.00 0.00 0.00 3.33
5599 7072 6.151144 GCTTGTTAAGTAGGGTTCATGATGTT 59.849 38.462 0.00 0.00 0.00 2.71
5601 7074 5.882557 AGCTTGTTAAGTAGGGTTCATGATG 59.117 40.000 0.00 0.00 0.00 3.07
5602 7075 6.067217 AGCTTGTTAAGTAGGGTTCATGAT 57.933 37.500 0.00 0.00 0.00 2.45
5603 7076 5.488341 GAGCTTGTTAAGTAGGGTTCATGA 58.512 41.667 0.00 0.00 0.00 3.07
5605 7078 4.222145 TCGAGCTTGTTAAGTAGGGTTCAT 59.778 41.667 0.00 0.00 0.00 2.57
5606 7079 3.575256 TCGAGCTTGTTAAGTAGGGTTCA 59.425 43.478 0.00 0.00 0.00 3.18
5607 7080 4.184079 TCGAGCTTGTTAAGTAGGGTTC 57.816 45.455 0.00 0.00 0.00 3.62
5608 7081 4.820894 ATCGAGCTTGTTAAGTAGGGTT 57.179 40.909 0.00 0.00 0.00 4.11
5610 7083 4.567159 GTGAATCGAGCTTGTTAAGTAGGG 59.433 45.833 0.00 0.00 0.00 3.53
5613 7086 5.862323 GTGAGTGAATCGAGCTTGTTAAGTA 59.138 40.000 0.00 0.00 0.00 2.24
5614 7087 4.686554 GTGAGTGAATCGAGCTTGTTAAGT 59.313 41.667 0.00 0.00 0.00 2.24
5615 7088 4.092091 GGTGAGTGAATCGAGCTTGTTAAG 59.908 45.833 0.00 0.00 0.00 1.85
5616 7089 3.994392 GGTGAGTGAATCGAGCTTGTTAA 59.006 43.478 0.00 0.00 0.00 2.01
5618 7091 2.224281 TGGTGAGTGAATCGAGCTTGTT 60.224 45.455 0.00 0.00 0.00 2.83
5620 7093 1.728971 GTGGTGAGTGAATCGAGCTTG 59.271 52.381 0.00 0.00 0.00 4.01
5621 7094 1.344438 TGTGGTGAGTGAATCGAGCTT 59.656 47.619 0.00 0.00 0.00 3.74
5623 7096 1.728971 CTTGTGGTGAGTGAATCGAGC 59.271 52.381 0.00 0.00 0.00 5.03
5624 7097 2.989840 GACTTGTGGTGAGTGAATCGAG 59.010 50.000 0.00 0.00 0.00 4.04
5625 7098 2.364002 TGACTTGTGGTGAGTGAATCGA 59.636 45.455 0.00 0.00 0.00 3.59
5626 7099 2.754472 TGACTTGTGGTGAGTGAATCG 58.246 47.619 0.00 0.00 0.00 3.34
5627 7100 4.614535 GCAATGACTTGTGGTGAGTGAATC 60.615 45.833 0.00 0.00 34.69 2.52
5629 7102 2.618241 GCAATGACTTGTGGTGAGTGAA 59.382 45.455 0.00 0.00 34.69 3.18
5631 7104 1.948834 TGCAATGACTTGTGGTGAGTG 59.051 47.619 0.00 0.00 34.69 3.51
5647 7120 7.446013 TGATGCTATGATTATCTTGTCATGCAA 59.554 33.333 12.68 3.18 39.66 4.08
5649 7122 7.373778 TGATGCTATGATTATCTTGTCATGC 57.626 36.000 0.00 0.00 36.53 4.06
5650 7123 9.162764 TGATGATGCTATGATTATCTTGTCATG 57.837 33.333 0.00 0.00 36.53 3.07
5651 7124 9.734984 TTGATGATGCTATGATTATCTTGTCAT 57.265 29.630 0.00 0.00 38.53 3.06
5652 7125 9.216117 CTTGATGATGCTATGATTATCTTGTCA 57.784 33.333 0.00 0.00 0.00 3.58
5653 7126 9.433153 TCTTGATGATGCTATGATTATCTTGTC 57.567 33.333 0.00 0.00 0.00 3.18
5658 7131 9.433153 TGTCTTCTTGATGATGCTATGATTATC 57.567 33.333 0.00 0.00 0.00 1.75
5660 7133 9.216117 CATGTCTTCTTGATGATGCTATGATTA 57.784 33.333 0.00 0.00 0.00 1.75
5661 7134 7.720074 ACATGTCTTCTTGATGATGCTATGATT 59.280 33.333 0.00 0.00 0.00 2.57
5663 7136 6.589135 ACATGTCTTCTTGATGATGCTATGA 58.411 36.000 0.00 0.00 0.00 2.15
5664 7137 6.862711 ACATGTCTTCTTGATGATGCTATG 57.137 37.500 0.00 0.00 0.00 2.23
5665 7138 7.338703 ACAAACATGTCTTCTTGATGATGCTAT 59.661 33.333 13.56 0.00 0.00 2.97
5666 7139 6.656270 ACAAACATGTCTTCTTGATGATGCTA 59.344 34.615 13.56 0.00 0.00 3.49
5667 7140 5.475909 ACAAACATGTCTTCTTGATGATGCT 59.524 36.000 13.56 0.00 0.00 3.79
5669 7142 6.905578 TCACAAACATGTCTTCTTGATGATG 58.094 36.000 13.56 3.39 0.00 3.07
5671 7144 6.940831 TTCACAAACATGTCTTCTTGATGA 57.059 33.333 13.56 10.42 0.00 2.92
5672 7145 6.974048 TGTTTCACAAACATGTCTTCTTGATG 59.026 34.615 13.56 8.73 45.79 3.07
5673 7146 7.099266 TGTTTCACAAACATGTCTTCTTGAT 57.901 32.000 13.56 0.00 45.79 2.57
5674 7147 6.507958 TGTTTCACAAACATGTCTTCTTGA 57.492 33.333 13.56 3.83 45.79 3.02
5769 7244 4.961438 ATGTTTCCTGGCAGATTGTTTT 57.039 36.364 17.94 0.00 0.00 2.43
5810 7286 7.275779 TGAAGTAGTCTAGAATGTCATTTTCGC 59.724 37.037 2.23 0.00 0.00 4.70
5914 7391 4.221530 TGATGCTACAGAGAGATCCATGT 58.778 43.478 0.00 0.00 0.00 3.21
6372 7860 1.124780 TCACGAGGTTGACTTTCCCA 58.875 50.000 0.00 0.00 0.00 4.37
6447 7939 3.090532 GAGACCTTCCCCGCCCAT 61.091 66.667 0.00 0.00 0.00 4.00
6991 9189 1.033202 TAATTTTTCCCCTCCGCGCC 61.033 55.000 0.00 0.00 0.00 6.53
6995 9193 2.820728 ACCCTAATTTTTCCCCTCCG 57.179 50.000 0.00 0.00 0.00 4.63
7008 9206 2.379226 TGATTTTCCCCCGAAACCCTAA 59.621 45.455 0.00 0.00 37.72 2.69
7016 9224 0.913205 TTCGGATGATTTTCCCCCGA 59.087 50.000 0.00 0.00 46.18 5.14
7017 9225 1.757682 TTTCGGATGATTTTCCCCCG 58.242 50.000 0.00 0.00 41.36 5.73
7018 9226 3.181466 CCATTTTCGGATGATTTTCCCCC 60.181 47.826 0.00 0.00 31.61 5.40
7019 9227 3.704061 TCCATTTTCGGATGATTTTCCCC 59.296 43.478 0.00 0.00 31.61 4.81
7020 9228 4.644685 TCTCCATTTTCGGATGATTTTCCC 59.355 41.667 0.00 0.00 33.56 3.97
7021 9229 5.221126 CCTCTCCATTTTCGGATGATTTTCC 60.221 44.000 0.00 0.00 33.56 3.13
7022 9230 5.221126 CCCTCTCCATTTTCGGATGATTTTC 60.221 44.000 0.00 0.00 33.56 2.29
7023 9231 4.646492 CCCTCTCCATTTTCGGATGATTTT 59.354 41.667 0.00 0.00 33.56 1.82
7024 9232 4.210331 CCCTCTCCATTTTCGGATGATTT 58.790 43.478 0.00 0.00 33.56 2.17
7025 9233 3.435601 CCCCTCTCCATTTTCGGATGATT 60.436 47.826 0.00 0.00 33.56 2.57
7026 9234 2.107204 CCCCTCTCCATTTTCGGATGAT 59.893 50.000 0.00 0.00 33.56 2.45
7096 9309 2.358247 ATCGCGTGGCCGAAAACT 60.358 55.556 5.77 0.00 41.01 2.66
7160 9373 3.966543 ACCCCCTCCAAAGTGGCG 61.967 66.667 0.00 0.00 37.47 5.69
7329 9549 0.946221 CTCTCGTTGTGAGTGGGTGC 60.946 60.000 0.00 0.00 45.46 5.01
7440 10204 6.676950 TCCACACTAATGTTAGTTTGCAATG 58.323 36.000 0.00 0.00 41.82 2.82
7525 16200 3.431233 CACATGATATCGCACTGATGTCC 59.569 47.826 0.00 0.00 42.73 4.02
7607 16300 5.545658 TTCGAAACAGCCTTCATGTTATC 57.454 39.130 0.00 0.00 39.91 1.75
7701 16403 3.066342 CCAGGTCATGCATGATCAAGAAC 59.934 47.826 35.18 20.19 40.37 3.01
7732 16434 1.442769 GCCAGAACTGATCTTGCGAA 58.557 50.000 3.19 0.00 37.11 4.70
7781 16483 0.469494 TGTCAGCCATGCATATCGGT 59.531 50.000 0.00 0.00 0.00 4.69
7831 16599 8.250332 TGACTTAAATAAATTGGCAAGTGGATC 58.750 33.333 5.96 0.00 0.00 3.36
7842 16610 9.956720 GGATCCACTGATGACTTAAATAAATTG 57.043 33.333 6.95 0.00 0.00 2.32
7845 16613 8.506168 GTGGATCCACTGATGACTTAAATAAA 57.494 34.615 33.47 0.00 43.12 1.40
7861 16629 4.446371 CTTATCTTGGTGAGTGGATCCAC 58.554 47.826 33.72 33.72 46.50 4.02
7979 16753 5.539955 ACTTTAGTTTACGGAGGGAGTACAA 59.460 40.000 0.00 0.00 0.00 2.41
7982 16756 5.324409 TCACTTTAGTTTACGGAGGGAGTA 58.676 41.667 0.00 0.00 0.00 2.59
7983 16757 4.154942 TCACTTTAGTTTACGGAGGGAGT 58.845 43.478 0.00 0.00 0.00 3.85
7984 16758 4.796038 TCACTTTAGTTTACGGAGGGAG 57.204 45.455 0.00 0.00 0.00 4.30
7985 16759 5.021458 AGATCACTTTAGTTTACGGAGGGA 58.979 41.667 0.00 0.00 0.00 4.20
7986 16760 5.340439 AGATCACTTTAGTTTACGGAGGG 57.660 43.478 0.00 0.00 0.00 4.30
7987 16761 7.008992 CGTTTAGATCACTTTAGTTTACGGAGG 59.991 40.741 0.00 0.00 0.00 4.30
7988 16762 7.462462 GCGTTTAGATCACTTTAGTTTACGGAG 60.462 40.741 0.00 0.00 0.00 4.63
7989 16763 6.308766 GCGTTTAGATCACTTTAGTTTACGGA 59.691 38.462 0.00 0.00 0.00 4.69
7990 16764 6.309737 AGCGTTTAGATCACTTTAGTTTACGG 59.690 38.462 0.00 0.00 0.00 4.02
7991 16765 7.272948 AGAGCGTTTAGATCACTTTAGTTTACG 59.727 37.037 0.00 0.00 37.82 3.18
7992 16766 8.463456 AGAGCGTTTAGATCACTTTAGTTTAC 57.537 34.615 0.00 0.00 37.82 2.01
7994 16768 7.964604 AAGAGCGTTTAGATCACTTTAGTTT 57.035 32.000 0.00 0.00 37.82 2.66
8006 16780 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
8007 16781 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
8008 16782 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
8009 16783 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
8010 16784 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
8011 16785 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
8012 16786 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
8013 16787 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
8014 16788 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
8015 16789 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
8016 16790 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
8017 16791 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
8018 16792 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
8019 16793 7.781693 TCTTGTACTCCCTCCGTAAACTAATAT 59.218 37.037 0.00 0.00 0.00 1.28
8020 16794 7.118723 TCTTGTACTCCCTCCGTAAACTAATA 58.881 38.462 0.00 0.00 0.00 0.98
8021 16795 5.954150 TCTTGTACTCCCTCCGTAAACTAAT 59.046 40.000 0.00 0.00 0.00 1.73
8022 16796 5.324409 TCTTGTACTCCCTCCGTAAACTAA 58.676 41.667 0.00 0.00 0.00 2.24
8023 16797 4.922206 TCTTGTACTCCCTCCGTAAACTA 58.078 43.478 0.00 0.00 0.00 2.24
8024 16798 3.762823 CTCTTGTACTCCCTCCGTAAACT 59.237 47.826 0.00 0.00 0.00 2.66
8025 16799 3.509184 ACTCTTGTACTCCCTCCGTAAAC 59.491 47.826 0.00 0.00 0.00 2.01
8026 16800 3.771216 ACTCTTGTACTCCCTCCGTAAA 58.229 45.455 0.00 0.00 0.00 2.01
8027 16801 3.446442 ACTCTTGTACTCCCTCCGTAA 57.554 47.619 0.00 0.00 0.00 3.18
8028 16802 3.087031 CAACTCTTGTACTCCCTCCGTA 58.913 50.000 0.00 0.00 0.00 4.02
8029 16803 1.893801 CAACTCTTGTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
8030 16804 1.404315 GCAACTCTTGTACTCCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
8031 16805 1.066071 GGCAACTCTTGTACTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
8032 16806 2.388310 GGCAACTCTTGTACTCCCTC 57.612 55.000 0.00 0.00 0.00 4.30
8213 16987 1.144503 CTGGCAGCCCTATGGATCTTT 59.855 52.381 9.64 0.00 0.00 2.52
8218 16992 1.767672 CCTCTGGCAGCCCTATGGA 60.768 63.158 9.64 0.00 0.00 3.41
8343 17117 0.995024 ACTCCAGATTGGGAAGGGTG 59.005 55.000 0.00 0.00 38.32 4.61
8362 17136 3.370846 CCATTCCAAGACATGTCCAGCTA 60.371 47.826 22.21 6.16 0.00 3.32
8426 17200 3.394836 AGCCGGAGAGGTTCAGCC 61.395 66.667 5.05 0.00 43.70 4.85
8525 17753 4.142038 AGTTGGGGCAATCGTATATTTCC 58.858 43.478 0.00 0.00 0.00 3.13
8592 17820 1.888215 AGCACATTGTCAGACCTGTG 58.112 50.000 21.17 21.17 41.44 3.66
8593 17821 3.261643 TGATAGCACATTGTCAGACCTGT 59.738 43.478 0.00 0.00 0.00 4.00
8642 17870 1.556911 GGACAAGATGAGGAGGAAGCA 59.443 52.381 0.00 0.00 0.00 3.91
8643 17871 1.836802 AGGACAAGATGAGGAGGAAGC 59.163 52.381 0.00 0.00 0.00 3.86
8644 17872 2.836981 ACAGGACAAGATGAGGAGGAAG 59.163 50.000 0.00 0.00 0.00 3.46
8645 17873 2.568956 CACAGGACAAGATGAGGAGGAA 59.431 50.000 0.00 0.00 0.00 3.36
8646 17874 2.182827 CACAGGACAAGATGAGGAGGA 58.817 52.381 0.00 0.00 0.00 3.71
8647 17875 2.168106 CTCACAGGACAAGATGAGGAGG 59.832 54.545 0.00 0.00 35.87 4.30
8648 17876 2.830923 ACTCACAGGACAAGATGAGGAG 59.169 50.000 5.20 0.00 42.39 3.69
8649 17877 2.828520 GACTCACAGGACAAGATGAGGA 59.171 50.000 5.20 0.00 42.39 3.71
8650 17878 2.564504 TGACTCACAGGACAAGATGAGG 59.435 50.000 5.20 0.00 42.39 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.