Multiple sequence alignment - TraesCS1B01G441700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G441700 chr1B 100.000 4722 0 0 1 4722 662559837 662555116 0.000000e+00 8720.0
1 TraesCS1B01G441700 chr1B 91.414 198 13 2 184 381 597160254 597160061 7.790000e-68 268.0
2 TraesCS1B01G441700 chr1B 94.186 86 2 3 461 543 39989227 39989312 1.380000e-25 128.0
3 TraesCS1B01G441700 chr1D 93.744 3309 108 34 1481 4722 476259134 476255858 0.000000e+00 4872.0
4 TraesCS1B01G441700 chr1D 88.833 797 33 22 698 1466 476259951 476259183 0.000000e+00 928.0
5 TraesCS1B01G441700 chr1A 91.918 3477 155 54 545 3948 572023370 572019947 0.000000e+00 4748.0
6 TraesCS1B01G441700 chr1A 83.123 794 70 34 3983 4722 572019948 572019165 0.000000e+00 665.0
7 TraesCS1B01G441700 chr1A 90.173 173 16 1 1 173 572023570 572023399 1.710000e-54 224.0
8 TraesCS1B01G441700 chr2B 82.025 790 114 22 2371 3138 143275992 143276775 0.000000e+00 647.0
9 TraesCS1B01G441700 chr2B 81.837 479 74 12 2668 3138 143741944 143742417 1.590000e-104 390.0
10 TraesCS1B01G441700 chr2D 80.590 814 108 31 2319 3097 90503669 90504467 2.450000e-162 582.0
11 TraesCS1B01G441700 chr2D 79.117 589 62 35 1508 2080 90502892 90503435 2.700000e-92 350.0
12 TraesCS1B01G441700 chr2D 91.220 205 16 2 2668 2871 90710450 90710653 1.290000e-70 278.0
13 TraesCS1B01G441700 chr2D 82.840 169 27 1 3590 3756 90504889 90505057 2.940000e-32 150.0
14 TraesCS1B01G441700 chr2D 91.011 89 6 2 457 543 528101182 528101270 8.300000e-23 119.0
15 TraesCS1B01G441700 chr2D 93.671 79 3 2 461 537 15187752 15187830 2.990000e-22 117.0
16 TraesCS1B01G441700 chr2A 85.417 576 65 16 2536 3094 90423438 90424011 8.810000e-162 580.0
17 TraesCS1B01G441700 chr2A 80.505 436 64 13 2717 3138 90518257 90518685 9.860000e-82 315.0
18 TraesCS1B01G441700 chr5B 91.414 198 12 3 184 381 628691264 628691072 2.800000e-67 267.0
19 TraesCS1B01G441700 chr5B 90.909 198 13 3 184 381 625111711 625111519 1.300000e-65 261.0
20 TraesCS1B01G441700 chr5B 88.614 202 19 3 180 381 510767005 510766808 4.720000e-60 243.0
21 TraesCS1B01G441700 chr5B 100.000 34 0 0 3953 3986 21599796 21599763 3.940000e-06 63.9
22 TraesCS1B01G441700 chr5B 94.444 36 2 0 73 108 629954558 629954593 6.600000e-04 56.5
23 TraesCS1B01G441700 chr5A 89.744 195 18 1 184 378 681409329 681409521 1.010000e-61 248.0
24 TraesCS1B01G441700 chr7B 96.296 81 2 1 463 542 721311583 721311663 1.070000e-26 132.0
25 TraesCS1B01G441700 chr6A 92.045 88 6 1 457 543 490473347 490473260 6.420000e-24 122.0
26 TraesCS1B01G441700 chr7A 91.667 84 5 2 461 543 101669157 101669239 1.070000e-21 115.0
27 TraesCS1B01G441700 chrUn 91.566 83 6 1 462 543 45538304 45538222 3.860000e-21 113.0
28 TraesCS1B01G441700 chrUn 90.588 85 7 1 461 544 16376046 16375962 1.390000e-20 111.0
29 TraesCS1B01G441700 chr5D 92.308 78 2 4 454 528 9128292 9128368 1.800000e-19 108.0
30 TraesCS1B01G441700 chr4B 93.617 47 2 1 70 116 496483609 496483654 8.480000e-08 69.4
31 TraesCS1B01G441700 chr3A 100.000 29 0 0 3953 3981 699620122 699620094 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G441700 chr1B 662555116 662559837 4721 True 8720.000000 8720 100.000000 1 4722 1 chr1B.!!$R2 4721
1 TraesCS1B01G441700 chr1D 476255858 476259951 4093 True 2900.000000 4872 91.288500 698 4722 2 chr1D.!!$R1 4024
2 TraesCS1B01G441700 chr1A 572019165 572023570 4405 True 1879.000000 4748 88.404667 1 4722 3 chr1A.!!$R1 4721
3 TraesCS1B01G441700 chr2B 143275992 143276775 783 False 647.000000 647 82.025000 2371 3138 1 chr2B.!!$F1 767
4 TraesCS1B01G441700 chr2D 90502892 90505057 2165 False 360.666667 582 80.849000 1508 3756 3 chr2D.!!$F4 2248
5 TraesCS1B01G441700 chr2A 90423438 90424011 573 False 580.000000 580 85.417000 2536 3094 1 chr2A.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.028902 GCCGCTTGTTCACTCGTTTT 59.971 50.0 0.00 0.00 0.00 2.43 F
538 539 0.036732 ACAATGAGCACACATCCGGT 59.963 50.0 0.00 0.00 0.00 5.28 F
626 627 0.037697 TCTTGACCGGTCATTGTCCG 60.038 55.0 36.52 19.74 46.49 4.79 F
1339 1397 0.105246 ATTGGGGGCTGGTGAACAAA 60.105 50.0 0.00 0.00 0.00 2.83 F
1723 1819 0.526662 CCGTCGAAGGAACTAGCACT 59.473 55.0 12.53 0.00 38.49 4.40 F
3468 3742 0.555769 TTTGTTCTCCTTGGGCTGGT 59.444 50.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2347 2487 0.179004 TGTGCCAACCGTCCAATTCT 60.179 50.000 0.00 0.0 0.00 2.40 R
2424 2573 7.275999 GGTCTACAACTGATAGCACTAGTTTTC 59.724 40.741 0.00 0.0 32.69 2.29 R
2593 2751 2.763249 GTGTTCTTGAGGCAACACTG 57.237 50.000 9.72 0.0 45.97 3.66 R
2979 3159 3.988379 TCAGAACACTCCATGCAAAAC 57.012 42.857 0.00 0.0 0.00 2.43 R
3598 3872 0.898320 AGTCATCTCCCCAGTTGTCG 59.102 55.000 0.00 0.0 0.00 4.35 R
4503 4885 1.947456 GGCACGATTTGACCCCTATTC 59.053 52.381 0.00 0.0 0.00 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.949105 GTCGTCGCAACCACAAGGAT 60.949 55.000 0.00 0.00 38.69 3.24
22 23 0.250124 TCGTCGCAACCACAAGGATT 60.250 50.000 0.00 0.00 38.69 3.01
59 60 1.446618 TCGATCTCACGTCGACGGA 60.447 57.895 37.89 29.08 42.57 4.69
105 106 3.612247 ATGTGGGCCAGTCTGCGTC 62.612 63.158 6.40 0.00 0.00 5.19
122 123 0.466124 GTCCCCATGTCCTGCTCTAC 59.534 60.000 0.00 0.00 0.00 2.59
127 128 1.489481 CATGTCCTGCTCTACCCTCA 58.511 55.000 0.00 0.00 0.00 3.86
130 131 0.324830 GTCCTGCTCTACCCTCACCT 60.325 60.000 0.00 0.00 0.00 4.00
131 132 0.413832 TCCTGCTCTACCCTCACCTT 59.586 55.000 0.00 0.00 0.00 3.50
137 138 1.204941 CTCTACCCTCACCTTTGACCG 59.795 57.143 0.00 0.00 0.00 4.79
140 141 0.840722 ACCCTCACCTTTGACCGGAT 60.841 55.000 9.46 0.00 0.00 4.18
149 150 0.323629 TTTGACCGGATCTGGGACAC 59.676 55.000 24.68 12.74 0.00 3.67
163 164 0.602905 GGACACGGAGGGAACAACAG 60.603 60.000 0.00 0.00 0.00 3.16
164 165 0.602905 GACACGGAGGGAACAACAGG 60.603 60.000 0.00 0.00 0.00 4.00
166 167 1.460689 ACGGAGGGAACAACAGGGA 60.461 57.895 0.00 0.00 0.00 4.20
173 174 2.280592 AACAACAGGGACGGTCGC 60.281 61.111 16.56 16.56 34.27 5.19
175 176 4.308458 CAACAGGGACGGTCGCCA 62.308 66.667 20.03 0.00 34.27 5.69
176 177 4.003788 AACAGGGACGGTCGCCAG 62.004 66.667 20.03 15.54 34.27 4.85
185 186 4.208686 GGTCGCCAGCGGAGTAGG 62.209 72.222 12.71 0.00 40.25 3.18
186 187 4.208686 GTCGCCAGCGGAGTAGGG 62.209 72.222 12.71 0.00 40.25 3.53
205 206 4.371975 CGGAGCCAGGACGAAAAA 57.628 55.556 0.00 0.00 0.00 1.94
206 207 1.866925 CGGAGCCAGGACGAAAAAC 59.133 57.895 0.00 0.00 0.00 2.43
208 209 0.601841 GGAGCCAGGACGAAAAACGA 60.602 55.000 0.00 0.00 45.77 3.85
209 210 0.790814 GAGCCAGGACGAAAAACGAG 59.209 55.000 0.00 0.00 45.77 4.18
210 211 0.391597 AGCCAGGACGAAAAACGAGA 59.608 50.000 0.00 0.00 45.77 4.04
211 212 0.790814 GCCAGGACGAAAAACGAGAG 59.209 55.000 0.00 0.00 45.77 3.20
212 213 1.429463 CCAGGACGAAAAACGAGAGG 58.571 55.000 0.00 0.00 45.77 3.69
213 214 1.429463 CAGGACGAAAAACGAGAGGG 58.571 55.000 0.00 0.00 45.77 4.30
214 215 0.320697 AGGACGAAAAACGAGAGGGG 59.679 55.000 0.00 0.00 45.77 4.79
215 216 0.672711 GGACGAAAAACGAGAGGGGG 60.673 60.000 0.00 0.00 45.77 5.40
216 217 1.296755 GACGAAAAACGAGAGGGGGC 61.297 60.000 0.00 0.00 45.77 5.80
217 218 1.302192 CGAAAAACGAGAGGGGGCA 60.302 57.895 0.00 0.00 45.77 5.36
218 219 0.887387 CGAAAAACGAGAGGGGGCAA 60.887 55.000 0.00 0.00 45.77 4.52
219 220 1.324383 GAAAAACGAGAGGGGGCAAA 58.676 50.000 0.00 0.00 0.00 3.68
220 221 1.893137 GAAAAACGAGAGGGGGCAAAT 59.107 47.619 0.00 0.00 0.00 2.32
221 222 2.891191 AAAACGAGAGGGGGCAAATA 57.109 45.000 0.00 0.00 0.00 1.40
222 223 3.382083 AAAACGAGAGGGGGCAAATAT 57.618 42.857 0.00 0.00 0.00 1.28
223 224 4.513406 AAAACGAGAGGGGGCAAATATA 57.487 40.909 0.00 0.00 0.00 0.86
224 225 4.724279 AAACGAGAGGGGGCAAATATAT 57.276 40.909 0.00 0.00 0.00 0.86
225 226 5.836024 AAACGAGAGGGGGCAAATATATA 57.164 39.130 0.00 0.00 0.00 0.86
226 227 4.820894 ACGAGAGGGGGCAAATATATAC 57.179 45.455 0.00 0.00 0.00 1.47
227 228 4.164981 ACGAGAGGGGGCAAATATATACA 58.835 43.478 0.00 0.00 0.00 2.29
228 229 4.020485 ACGAGAGGGGGCAAATATATACAC 60.020 45.833 0.00 0.00 0.00 2.90
229 230 4.020573 CGAGAGGGGGCAAATATATACACA 60.021 45.833 0.00 0.00 0.00 3.72
230 231 5.512404 CGAGAGGGGGCAAATATATACACAA 60.512 44.000 0.00 0.00 0.00 3.33
231 232 6.274322 AGAGGGGGCAAATATATACACAAA 57.726 37.500 0.00 0.00 0.00 2.83
232 233 6.863322 AGAGGGGGCAAATATATACACAAAT 58.137 36.000 0.00 0.00 0.00 2.32
233 234 7.305246 AGAGGGGGCAAATATATACACAAATT 58.695 34.615 0.00 0.00 0.00 1.82
234 235 7.789349 AGAGGGGGCAAATATATACACAAATTT 59.211 33.333 0.00 0.00 0.00 1.82
235 236 8.330638 AGGGGGCAAATATATACACAAATTTT 57.669 30.769 0.00 0.00 0.00 1.82
236 237 8.777089 AGGGGGCAAATATATACACAAATTTTT 58.223 29.630 0.00 0.00 0.00 1.94
260 261 9.706691 TTTTCTTTGAGAAACATAGATACGAGT 57.293 29.630 2.79 0.00 43.25 4.18
261 262 9.706691 TTTCTTTGAGAAACATAGATACGAGTT 57.293 29.630 0.00 0.00 39.13 3.01
266 267 9.529325 TTGAGAAACATAGATACGAGTTAATGG 57.471 33.333 0.00 0.00 0.00 3.16
267 268 7.652105 TGAGAAACATAGATACGAGTTAATGGC 59.348 37.037 0.00 0.00 0.00 4.40
268 269 7.727181 AGAAACATAGATACGAGTTAATGGCT 58.273 34.615 0.00 0.00 0.00 4.75
269 270 7.868415 AGAAACATAGATACGAGTTAATGGCTC 59.132 37.037 0.00 0.00 0.00 4.70
282 283 8.462143 GAGTTAATGGCTCGATCGATTATAAA 57.538 34.615 19.78 6.56 0.00 1.40
283 284 8.467402 AGTTAATGGCTCGATCGATTATAAAG 57.533 34.615 19.78 6.07 0.00 1.85
284 285 5.786401 AATGGCTCGATCGATTATAAAGC 57.214 39.130 19.78 15.89 0.00 3.51
285 286 3.585862 TGGCTCGATCGATTATAAAGCC 58.414 45.455 26.54 26.54 42.15 4.35
286 287 3.006430 TGGCTCGATCGATTATAAAGCCA 59.994 43.478 30.01 30.01 46.01 4.75
287 288 3.994392 GGCTCGATCGATTATAAAGCCAA 59.006 43.478 27.64 1.50 41.73 4.52
288 289 4.143094 GGCTCGATCGATTATAAAGCCAAC 60.143 45.833 27.64 8.99 41.73 3.77
289 290 4.143094 GCTCGATCGATTATAAAGCCAACC 60.143 45.833 19.78 0.00 0.00 3.77
290 291 4.951254 TCGATCGATTATAAAGCCAACCA 58.049 39.130 15.15 0.00 0.00 3.67
291 292 4.988540 TCGATCGATTATAAAGCCAACCAG 59.011 41.667 15.15 0.00 0.00 4.00
292 293 4.988540 CGATCGATTATAAAGCCAACCAGA 59.011 41.667 10.26 0.00 0.00 3.86
293 294 5.639506 CGATCGATTATAAAGCCAACCAGAT 59.360 40.000 10.26 0.00 0.00 2.90
294 295 6.147821 CGATCGATTATAAAGCCAACCAGATT 59.852 38.462 10.26 0.00 0.00 2.40
295 296 7.307989 CGATCGATTATAAAGCCAACCAGATTT 60.308 37.037 10.26 0.00 0.00 2.17
296 297 8.918202 ATCGATTATAAAGCCAACCAGATTTA 57.082 30.769 0.00 0.00 0.00 1.40
297 298 8.740123 TCGATTATAAAGCCAACCAGATTTAA 57.260 30.769 0.00 0.00 0.00 1.52
298 299 9.179909 TCGATTATAAAGCCAACCAGATTTAAA 57.820 29.630 0.00 0.00 0.00 1.52
299 300 9.796120 CGATTATAAAGCCAACCAGATTTAAAA 57.204 29.630 0.00 0.00 0.00 1.52
302 303 9.921637 TTATAAAGCCAACCAGATTTAAAAGTG 57.078 29.630 0.00 0.00 0.00 3.16
303 304 6.478512 AAAGCCAACCAGATTTAAAAGTGA 57.521 33.333 0.00 0.00 0.00 3.41
304 305 6.478512 AAGCCAACCAGATTTAAAAGTGAA 57.521 33.333 0.00 0.00 0.00 3.18
305 306 6.670695 AGCCAACCAGATTTAAAAGTGAAT 57.329 33.333 0.00 0.00 0.00 2.57
306 307 7.066307 AGCCAACCAGATTTAAAAGTGAATT 57.934 32.000 0.00 0.00 0.00 2.17
307 308 7.508687 AGCCAACCAGATTTAAAAGTGAATTT 58.491 30.769 0.00 0.00 0.00 1.82
308 309 7.992608 AGCCAACCAGATTTAAAAGTGAATTTT 59.007 29.630 0.00 0.00 43.54 1.82
309 310 8.620416 GCCAACCAGATTTAAAAGTGAATTTTT 58.380 29.630 0.00 0.00 41.40 1.94
338 339 8.873215 ATGAAATTACGACGTGAATCTAGATT 57.127 30.769 17.96 17.96 0.00 2.40
339 340 8.336498 TGAAATTACGACGTGAATCTAGATTC 57.664 34.615 30.59 30.59 45.55 2.52
360 361 8.937634 GATTCAATCAATCTACTTGCCAATTT 57.062 30.769 0.00 0.00 38.36 1.82
367 368 9.643693 ATCAATCTACTTGCCAATTTAAAAGTG 57.356 29.630 0.00 0.00 34.76 3.16
368 369 8.855110 TCAATCTACTTGCCAATTTAAAAGTGA 58.145 29.630 0.00 4.00 34.76 3.41
369 370 9.474920 CAATCTACTTGCCAATTTAAAAGTGAA 57.525 29.630 0.00 0.00 34.76 3.18
391 392 9.495754 GTGAAATTTATACTCAACAGATGAAGC 57.504 33.333 0.00 0.00 37.67 3.86
392 393 8.677300 TGAAATTTATACTCAACAGATGAAGCC 58.323 33.333 0.00 0.00 37.67 4.35
393 394 6.851222 ATTTATACTCAACAGATGAAGCCG 57.149 37.500 0.00 0.00 37.67 5.52
394 395 2.010145 TACTCAACAGATGAAGCCGC 57.990 50.000 0.00 0.00 37.67 6.53
395 396 0.322975 ACTCAACAGATGAAGCCGCT 59.677 50.000 0.00 0.00 37.67 5.52
396 397 1.271054 ACTCAACAGATGAAGCCGCTT 60.271 47.619 4.98 4.98 37.67 4.68
397 398 1.129998 CTCAACAGATGAAGCCGCTTG 59.870 52.381 11.20 0.00 37.67 4.01
398 399 0.877071 CAACAGATGAAGCCGCTTGT 59.123 50.000 11.20 0.00 0.00 3.16
399 400 1.267806 CAACAGATGAAGCCGCTTGTT 59.732 47.619 11.20 5.95 0.00 2.83
400 401 1.160137 ACAGATGAAGCCGCTTGTTC 58.840 50.000 11.20 7.05 0.00 3.18
401 402 1.159285 CAGATGAAGCCGCTTGTTCA 58.841 50.000 11.20 2.69 37.10 3.18
402 403 1.135859 CAGATGAAGCCGCTTGTTCAC 60.136 52.381 11.20 0.00 35.55 3.18
403 404 1.160137 GATGAAGCCGCTTGTTCACT 58.840 50.000 11.20 0.00 35.55 3.41
404 405 1.129437 GATGAAGCCGCTTGTTCACTC 59.871 52.381 11.20 0.00 35.55 3.51
405 406 1.221466 TGAAGCCGCTTGTTCACTCG 61.221 55.000 11.20 0.00 0.00 4.18
406 407 1.222115 GAAGCCGCTTGTTCACTCGT 61.222 55.000 11.20 0.00 0.00 4.18
407 408 0.814010 AAGCCGCTTGTTCACTCGTT 60.814 50.000 4.39 0.00 0.00 3.85
408 409 0.814010 AGCCGCTTGTTCACTCGTTT 60.814 50.000 0.00 0.00 0.00 3.60
409 410 0.028902 GCCGCTTGTTCACTCGTTTT 59.971 50.000 0.00 0.00 0.00 2.43
410 411 1.533129 GCCGCTTGTTCACTCGTTTTT 60.533 47.619 0.00 0.00 0.00 1.94
446 447 4.943373 AAAAACGAGTGGGGGCAT 57.057 50.000 0.00 0.00 0.00 4.40
447 448 2.350738 AAAAACGAGTGGGGGCATG 58.649 52.632 0.00 0.00 0.00 4.06
448 449 0.469144 AAAAACGAGTGGGGGCATGT 60.469 50.000 0.00 0.00 0.00 3.21
449 450 0.402504 AAAACGAGTGGGGGCATGTA 59.597 50.000 0.00 0.00 0.00 2.29
450 451 0.402504 AAACGAGTGGGGGCATGTAA 59.597 50.000 0.00 0.00 0.00 2.41
451 452 0.623723 AACGAGTGGGGGCATGTAAT 59.376 50.000 0.00 0.00 0.00 1.89
452 453 0.623723 ACGAGTGGGGGCATGTAATT 59.376 50.000 0.00 0.00 0.00 1.40
453 454 1.005450 ACGAGTGGGGGCATGTAATTT 59.995 47.619 0.00 0.00 0.00 1.82
454 455 2.099405 CGAGTGGGGGCATGTAATTTT 58.901 47.619 0.00 0.00 0.00 1.82
455 456 3.283751 CGAGTGGGGGCATGTAATTTTA 58.716 45.455 0.00 0.00 0.00 1.52
456 457 3.888930 CGAGTGGGGGCATGTAATTTTAT 59.111 43.478 0.00 0.00 0.00 1.40
457 458 4.261572 CGAGTGGGGGCATGTAATTTTATG 60.262 45.833 0.00 0.00 0.00 1.90
458 459 4.877773 AGTGGGGGCATGTAATTTTATGA 58.122 39.130 0.00 0.00 0.00 2.15
459 460 5.276440 AGTGGGGGCATGTAATTTTATGAA 58.724 37.500 0.00 0.00 0.00 2.57
460 461 5.904750 AGTGGGGGCATGTAATTTTATGAAT 59.095 36.000 0.00 0.00 0.00 2.57
461 462 6.386635 AGTGGGGGCATGTAATTTTATGAATT 59.613 34.615 0.00 0.00 0.00 2.17
462 463 7.053498 GTGGGGGCATGTAATTTTATGAATTT 58.947 34.615 0.00 0.00 0.00 1.82
463 464 7.555914 GTGGGGGCATGTAATTTTATGAATTTT 59.444 33.333 0.00 0.00 0.00 1.82
464 465 8.112183 TGGGGGCATGTAATTTTATGAATTTTT 58.888 29.630 0.00 0.00 0.00 1.94
489 490 9.672673 TTTTTGACAAAGGGTGAATTTTATTGA 57.327 25.926 0.10 0.00 0.00 2.57
490 491 8.655651 TTTGACAAAGGGTGAATTTTATTGAC 57.344 30.769 0.00 0.00 0.00 3.18
491 492 7.595819 TGACAAAGGGTGAATTTTATTGACT 57.404 32.000 0.00 0.00 0.00 3.41
492 493 7.657336 TGACAAAGGGTGAATTTTATTGACTC 58.343 34.615 0.00 0.00 0.00 3.36
493 494 7.286546 TGACAAAGGGTGAATTTTATTGACTCA 59.713 33.333 0.00 0.00 0.00 3.41
494 495 7.661040 ACAAAGGGTGAATTTTATTGACTCAG 58.339 34.615 0.00 0.00 0.00 3.35
495 496 7.505585 ACAAAGGGTGAATTTTATTGACTCAGA 59.494 33.333 0.00 0.00 0.00 3.27
496 497 8.526147 CAAAGGGTGAATTTTATTGACTCAGAT 58.474 33.333 0.00 0.00 0.00 2.90
497 498 7.636150 AGGGTGAATTTTATTGACTCAGATG 57.364 36.000 0.00 0.00 0.00 2.90
498 499 7.405292 AGGGTGAATTTTATTGACTCAGATGA 58.595 34.615 0.00 0.00 0.00 2.92
499 500 7.890127 AGGGTGAATTTTATTGACTCAGATGAA 59.110 33.333 0.00 0.00 0.00 2.57
500 501 8.186821 GGGTGAATTTTATTGACTCAGATGAAG 58.813 37.037 0.00 0.00 0.00 3.02
501 502 7.699812 GGTGAATTTTATTGACTCAGATGAAGC 59.300 37.037 0.00 0.00 0.00 3.86
502 503 8.239314 GTGAATTTTATTGACTCAGATGAAGCA 58.761 33.333 0.00 0.00 0.00 3.91
503 504 8.963725 TGAATTTTATTGACTCAGATGAAGCAT 58.036 29.630 0.00 0.00 0.00 3.79
504 505 9.448294 GAATTTTATTGACTCAGATGAAGCATC 57.552 33.333 0.00 0.00 40.80 3.91
505 506 7.926674 TTTTATTGACTCAGATGAAGCATCA 57.073 32.000 9.77 0.00 42.72 3.07
506 507 7.926674 TTTATTGACTCAGATGAAGCATCAA 57.073 32.000 9.77 0.00 42.72 2.57
507 508 7.549615 TTATTGACTCAGATGAAGCATCAAG 57.450 36.000 9.77 8.62 42.72 3.02
508 509 4.548451 TGACTCAGATGAAGCATCAAGT 57.452 40.909 9.77 11.25 42.72 3.16
509 510 4.251268 TGACTCAGATGAAGCATCAAGTG 58.749 43.478 15.55 0.00 42.72 3.16
510 511 3.607741 ACTCAGATGAAGCATCAAGTGG 58.392 45.455 9.77 0.00 42.72 4.00
511 512 3.262660 ACTCAGATGAAGCATCAAGTGGA 59.737 43.478 9.77 0.00 42.72 4.02
512 513 4.080469 ACTCAGATGAAGCATCAAGTGGAT 60.080 41.667 9.77 0.00 42.72 3.41
513 514 5.129980 ACTCAGATGAAGCATCAAGTGGATA 59.870 40.000 9.77 0.00 42.72 2.59
514 515 5.363101 TCAGATGAAGCATCAAGTGGATAC 58.637 41.667 9.77 0.00 42.72 2.24
515 516 5.104817 TCAGATGAAGCATCAAGTGGATACA 60.105 40.000 9.77 0.00 43.77 2.29
516 517 5.587443 CAGATGAAGCATCAAGTGGATACAA 59.413 40.000 9.77 0.00 45.98 2.41
517 518 6.094464 CAGATGAAGCATCAAGTGGATACAAA 59.906 38.462 9.77 0.00 45.98 2.83
518 519 5.627499 TGAAGCATCAAGTGGATACAAAC 57.373 39.130 0.00 0.00 40.19 2.93
519 520 5.069318 TGAAGCATCAAGTGGATACAAACA 58.931 37.500 0.00 0.00 40.19 2.83
520 521 5.048782 TGAAGCATCAAGTGGATACAAACAC 60.049 40.000 0.00 0.00 40.19 3.32
521 522 7.411930 TGAAGCATCAAGTGGATACAAACACA 61.412 38.462 0.00 0.00 40.19 3.72
522 523 8.815343 TGAAGCATCAAGTGGATACAAACACAA 61.815 37.037 0.00 0.00 40.19 3.33
530 531 4.764679 GGATACAAACACAATGAGCACA 57.235 40.909 0.00 0.00 0.00 4.57
531 532 4.475944 GGATACAAACACAATGAGCACAC 58.524 43.478 0.00 0.00 0.00 3.82
532 533 4.023279 GGATACAAACACAATGAGCACACA 60.023 41.667 0.00 0.00 0.00 3.72
533 534 5.335897 GGATACAAACACAATGAGCACACAT 60.336 40.000 0.00 0.00 0.00 3.21
534 535 3.968649 ACAAACACAATGAGCACACATC 58.031 40.909 0.00 0.00 0.00 3.06
535 536 3.243501 ACAAACACAATGAGCACACATCC 60.244 43.478 0.00 0.00 0.00 3.51
536 537 1.159285 ACACAATGAGCACACATCCG 58.841 50.000 0.00 0.00 0.00 4.18
537 538 0.448990 CACAATGAGCACACATCCGG 59.551 55.000 0.00 0.00 0.00 5.14
538 539 0.036732 ACAATGAGCACACATCCGGT 59.963 50.000 0.00 0.00 0.00 5.28
539 540 0.729116 CAATGAGCACACATCCGGTC 59.271 55.000 0.00 0.00 0.00 4.79
540 541 0.615331 AATGAGCACACATCCGGTCT 59.385 50.000 0.00 0.00 0.00 3.85
541 542 0.176680 ATGAGCACACATCCGGTCTC 59.823 55.000 0.00 0.00 0.00 3.36
542 543 0.900182 TGAGCACACATCCGGTCTCT 60.900 55.000 0.00 0.00 0.00 3.10
543 544 1.103803 GAGCACACATCCGGTCTCTA 58.896 55.000 0.00 0.00 0.00 2.43
547 548 2.418746 GCACACATCCGGTCTCTAATGT 60.419 50.000 0.00 0.00 32.73 2.71
552 553 6.538742 CACACATCCGGTCTCTAATGTAATTT 59.461 38.462 0.00 0.00 37.87 1.82
557 558 9.489084 CATCCGGTCTCTAATGTAATTTTATGA 57.511 33.333 0.00 0.00 37.87 2.15
595 596 2.726832 AGGTACTCGCTTGTTCACTC 57.273 50.000 0.00 0.00 0.00 3.51
596 597 1.068472 AGGTACTCGCTTGTTCACTCG 60.068 52.381 0.00 0.00 0.00 4.18
597 598 1.068748 GGTACTCGCTTGTTCACTCGA 60.069 52.381 0.00 0.00 0.00 4.04
604 605 6.097356 ACTCGCTTGTTCACTCGAATATTTA 58.903 36.000 0.00 0.00 32.61 1.40
608 609 6.895040 CGCTTGTTCACTCGAATATTTAAGTC 59.105 38.462 0.00 0.00 32.61 3.01
620 621 6.479001 CGAATATTTAAGTCTTGACCGGTCAT 59.521 38.462 36.52 23.78 39.64 3.06
624 625 2.457366 AGTCTTGACCGGTCATTGTC 57.543 50.000 36.52 26.34 39.64 3.18
626 627 0.037697 TCTTGACCGGTCATTGTCCG 60.038 55.000 36.52 19.74 46.49 4.79
629 630 3.636313 GACCGGTCATTGTCCGCGA 62.636 63.158 29.75 0.00 45.71 5.87
630 631 2.885644 CCGGTCATTGTCCGCGAG 60.886 66.667 8.23 0.00 45.71 5.03
632 633 2.434185 GGTCATTGTCCGCGAGCA 60.434 61.111 8.23 2.39 0.00 4.26
634 635 1.738099 GTCATTGTCCGCGAGCACT 60.738 57.895 8.23 0.00 0.00 4.40
636 637 1.737735 CATTGTCCGCGAGCACTCA 60.738 57.895 8.23 0.00 0.00 3.41
637 638 1.005037 ATTGTCCGCGAGCACTCAA 60.005 52.632 8.23 3.92 0.00 3.02
638 639 1.291877 ATTGTCCGCGAGCACTCAAC 61.292 55.000 8.23 0.00 0.00 3.18
639 640 3.470567 GTCCGCGAGCACTCAACG 61.471 66.667 8.23 1.13 0.00 4.10
640 641 3.973516 TCCGCGAGCACTCAACGT 61.974 61.111 8.23 0.00 0.00 3.99
642 643 2.465920 CGCGAGCACTCAACGTTC 59.534 61.111 0.00 0.00 0.00 3.95
644 645 1.488957 GCGAGCACTCAACGTTCTG 59.511 57.895 0.00 0.00 0.00 3.02
646 647 0.318699 CGAGCACTCAACGTTCTGGA 60.319 55.000 0.00 0.00 0.00 3.86
648 649 0.601311 AGCACTCAACGTTCTGGAGC 60.601 55.000 12.60 9.19 31.88 4.70
649 650 1.891060 GCACTCAACGTTCTGGAGCG 61.891 60.000 12.60 5.38 40.90 5.03
657 658 1.069227 ACGTTCTGGAGCGAATTTTGC 60.069 47.619 13.20 0.00 38.42 3.68
658 659 1.729149 CGTTCTGGAGCGAATTTTGCC 60.729 52.381 4.96 0.00 37.19 4.52
659 660 0.521291 TTCTGGAGCGAATTTTGCCG 59.479 50.000 4.96 0.00 0.00 5.69
675 676 1.308998 GCCGGGTCCAATTGTAGATG 58.691 55.000 2.18 0.00 0.00 2.90
676 677 1.308998 CCGGGTCCAATTGTAGATGC 58.691 55.000 4.43 0.00 0.00 3.91
678 679 2.643551 CGGGTCCAATTGTAGATGCTT 58.356 47.619 4.43 0.00 0.00 3.91
681 682 4.638421 CGGGTCCAATTGTAGATGCTTTTA 59.362 41.667 4.43 0.00 0.00 1.52
684 685 6.071616 GGGTCCAATTGTAGATGCTTTTACAA 60.072 38.462 15.27 15.27 42.16 2.41
685 686 6.806739 GGTCCAATTGTAGATGCTTTTACAAC 59.193 38.462 15.24 5.93 41.15 3.32
686 687 7.367285 GTCCAATTGTAGATGCTTTTACAACA 58.633 34.615 15.24 0.00 41.15 3.33
694 695 3.082698 TGCTTTTACAACAGCAGCTTG 57.917 42.857 0.00 0.00 41.20 4.01
696 697 2.791004 GCTTTTACAACAGCAGCTTGTG 59.209 45.455 9.65 5.40 35.95 3.33
838 875 1.067776 CCTCGAGTTGCCGTCTAGTTT 60.068 52.381 12.31 0.00 0.00 2.66
1193 1238 4.847444 GGGAGCTCTGCTTCCGCC 62.847 72.222 14.64 0.00 45.16 6.13
1194 1239 4.087892 GGAGCTCTGCTTCCGCCA 62.088 66.667 14.64 0.00 39.88 5.69
1195 1240 2.188994 GAGCTCTGCTTCCGCCAT 59.811 61.111 6.43 0.00 39.88 4.40
1196 1241 1.451028 GAGCTCTGCTTCCGCCATT 60.451 57.895 6.43 0.00 39.88 3.16
1197 1242 0.179073 GAGCTCTGCTTCCGCCATTA 60.179 55.000 6.43 0.00 39.88 1.90
1233 1278 5.228843 GCAGAGAGCTTGATTTAAATTTCGC 59.771 40.000 1.43 5.46 41.15 4.70
1278 1335 3.749088 TCTGTATTTAGGGTGTTGCGTTG 59.251 43.478 0.00 0.00 0.00 4.10
1309 1366 4.931601 TGATATGAATTCCGCATCAGTAGC 59.068 41.667 2.27 0.00 0.00 3.58
1335 1393 1.139498 TCAGATTGGGGGCTGGTGAA 61.139 55.000 0.00 0.00 33.05 3.18
1336 1394 0.967380 CAGATTGGGGGCTGGTGAAC 60.967 60.000 0.00 0.00 0.00 3.18
1339 1397 0.105246 ATTGGGGGCTGGTGAACAAA 60.105 50.000 0.00 0.00 0.00 2.83
1342 1400 1.055849 GGGGGCTGGTGAACAAATTT 58.944 50.000 0.00 0.00 0.00 1.82
1344 1402 1.511850 GGGCTGGTGAACAAATTTGC 58.488 50.000 18.12 3.55 0.00 3.68
1381 1439 5.336213 CCATGCAAGCTTAATTTCAGACAGT 60.336 40.000 0.00 0.00 0.00 3.55
1418 1476 3.067461 CAGTGATCTAGTAGTGAGGCACC 59.933 52.174 0.00 0.00 34.49 5.01
1448 1506 6.668323 TGCAAACTTAATTTCAGACAGCTAC 58.332 36.000 0.00 0.00 0.00 3.58
1461 1519 5.055144 CAGACAGCTACATCAATACAGCAT 58.945 41.667 0.00 0.00 36.47 3.79
1466 1524 7.219322 ACAGCTACATCAATACAGCATCAATA 58.781 34.615 0.00 0.00 36.47 1.90
1467 1525 7.172190 ACAGCTACATCAATACAGCATCAATAC 59.828 37.037 0.00 0.00 36.47 1.89
1469 1527 7.881751 AGCTACATCAATACAGCATCAATACAT 59.118 33.333 0.00 0.00 36.47 2.29
1471 1529 9.211485 CTACATCAATACAGCATCAATACATCA 57.789 33.333 0.00 0.00 0.00 3.07
1473 1531 9.074576 ACATCAATACAGCATCAATACATCAAT 57.925 29.630 0.00 0.00 0.00 2.57
1477 1535 9.821662 CAATACAGCATCAATACATCAATACAG 57.178 33.333 0.00 0.00 0.00 2.74
1478 1536 6.309712 ACAGCATCAATACATCAATACAGC 57.690 37.500 0.00 0.00 0.00 4.40
1479 1537 5.824097 ACAGCATCAATACATCAATACAGCA 59.176 36.000 0.00 0.00 0.00 4.41
1489 1581 4.875536 ACATCAATACAGCAGCGATGTTTA 59.124 37.500 1.22 0.00 43.02 2.01
1493 1589 4.715520 ATACAGCAGCGATGTTTATTCG 57.284 40.909 1.22 0.00 39.55 3.34
1503 1599 6.031417 CAGCGATGTTTATTCGTTTTTGTCTC 59.969 38.462 0.00 0.00 38.81 3.36
1537 1633 7.061094 CACGTTTTCTTTTGAATTCAGGATAGC 59.939 37.037 8.41 5.62 38.37 2.97
1723 1819 0.526662 CCGTCGAAGGAACTAGCACT 59.473 55.000 12.53 0.00 38.49 4.40
1807 1905 2.626840 GACTTCTTGCAGGATCCACTC 58.373 52.381 15.82 2.62 0.00 3.51
1810 1908 3.009916 ACTTCTTGCAGGATCCACTCATT 59.990 43.478 15.82 0.00 0.00 2.57
1879 1977 1.967319 TCGCCTGCTTGAAAGTTTCT 58.033 45.000 16.33 0.00 0.00 2.52
1912 2010 9.617975 GATTTTCTAGTCATTTGTTCTTCCTTG 57.382 33.333 0.00 0.00 0.00 3.61
1951 2057 8.592998 GTGTAGTTGCTTACGATATTATATGCC 58.407 37.037 0.00 0.00 0.00 4.40
1955 2061 7.878127 AGTTGCTTACGATATTATATGCCTTGT 59.122 33.333 0.00 0.00 0.00 3.16
2347 2487 6.543465 GCTGCTACCATAATATGCCAATGATA 59.457 38.462 0.00 0.00 0.00 2.15
2393 2542 5.106197 TGACATGACATTAATGAGTTGCCAC 60.106 40.000 22.16 10.38 0.00 5.01
2424 2573 2.544480 TTCTCTATCAGTGTGTCGCG 57.456 50.000 0.00 0.00 0.00 5.87
2524 2681 6.373779 CCACAAACAAAGACTAGCATACTTG 58.626 40.000 0.00 0.00 0.00 3.16
2593 2751 3.995048 CGGAGTCCCTGTAGAACTTTTTC 59.005 47.826 2.80 0.00 0.00 2.29
2979 3159 7.802738 TCGTGTAAAATGTCTCAGTATTTTGG 58.197 34.615 10.65 2.05 37.16 3.28
3264 3527 9.474920 CTGAATGTTATACTGATCTTCTCTTCC 57.525 37.037 0.00 0.00 0.00 3.46
3266 3529 9.691362 GAATGTTATACTGATCTTCTCTTCCTC 57.309 37.037 0.00 0.00 0.00 3.71
3267 3530 9.432982 AATGTTATACTGATCTTCTCTTCCTCT 57.567 33.333 0.00 0.00 0.00 3.69
3268 3531 8.231692 TGTTATACTGATCTTCTCTTCCTCTG 57.768 38.462 0.00 0.00 0.00 3.35
3405 3679 2.032681 AAGGAACACAGGCCGAGC 59.967 61.111 0.00 0.00 0.00 5.03
3468 3742 0.555769 TTTGTTCTCCTTGGGCTGGT 59.444 50.000 0.00 0.00 0.00 4.00
3541 3815 3.175240 CAGAAGCTCGACGCACCG 61.175 66.667 9.09 0.00 42.61 4.94
3598 3872 1.557269 ATCAGCCTGACCAGTGGGAC 61.557 60.000 15.21 7.89 38.05 4.46
3730 4006 0.746923 GGAAAGATTAGCCGCCGGTT 60.747 55.000 4.45 0.00 0.00 4.44
3745 4021 3.326747 GCCGGTTGGATGTCTATATCAC 58.673 50.000 1.90 0.00 37.49 3.06
3757 4033 7.868415 GGATGTCTATATCACCGCCTATATTTC 59.132 40.741 0.00 0.00 0.00 2.17
3927 4206 2.080693 TGCAGTATTTTAGTGGCACGG 58.919 47.619 12.71 0.00 0.00 4.94
3948 4289 4.669197 CGGTTCTGTACTTGTTTATGCTGC 60.669 45.833 0.00 0.00 0.00 5.25
3949 4290 4.379499 GGTTCTGTACTTGTTTATGCTGCC 60.379 45.833 0.00 0.00 0.00 4.85
3950 4291 4.286297 TCTGTACTTGTTTATGCTGCCT 57.714 40.909 0.00 0.00 0.00 4.75
3951 4292 4.253685 TCTGTACTTGTTTATGCTGCCTC 58.746 43.478 0.00 0.00 0.00 4.70
3952 4293 3.343617 TGTACTTGTTTATGCTGCCTCC 58.656 45.455 0.00 0.00 0.00 4.30
3954 4295 1.106285 CTTGTTTATGCTGCCTCCCC 58.894 55.000 0.00 0.00 0.00 4.81
3956 4297 0.630673 TGTTTATGCTGCCTCCCCAT 59.369 50.000 0.00 0.00 0.00 4.00
3958 4299 2.243478 TGTTTATGCTGCCTCCCCATAA 59.757 45.455 0.00 0.00 31.61 1.90
3959 4300 3.117169 TGTTTATGCTGCCTCCCCATAAT 60.117 43.478 0.00 0.00 33.09 1.28
3960 4301 4.105537 TGTTTATGCTGCCTCCCCATAATA 59.894 41.667 0.00 0.00 33.09 0.98
3961 4302 2.887151 ATGCTGCCTCCCCATAATAC 57.113 50.000 0.00 0.00 0.00 1.89
3962 4303 1.517238 TGCTGCCTCCCCATAATACA 58.483 50.000 0.00 0.00 0.00 2.29
3963 4304 1.849692 TGCTGCCTCCCCATAATACAA 59.150 47.619 0.00 0.00 0.00 2.41
3964 4305 2.158623 TGCTGCCTCCCCATAATACAAG 60.159 50.000 0.00 0.00 0.00 3.16
3965 4306 2.106511 GCTGCCTCCCCATAATACAAGA 59.893 50.000 0.00 0.00 0.00 3.02
3966 4307 3.435026 GCTGCCTCCCCATAATACAAGAA 60.435 47.826 0.00 0.00 0.00 2.52
3967 4308 4.137543 CTGCCTCCCCATAATACAAGAAC 58.862 47.826 0.00 0.00 0.00 3.01
3968 4309 3.139077 GCCTCCCCATAATACAAGAACG 58.861 50.000 0.00 0.00 0.00 3.95
3969 4310 3.433173 GCCTCCCCATAATACAAGAACGT 60.433 47.826 0.00 0.00 0.00 3.99
3970 4311 4.777463 CCTCCCCATAATACAAGAACGTT 58.223 43.478 0.00 0.00 0.00 3.99
3971 4312 5.190677 CCTCCCCATAATACAAGAACGTTT 58.809 41.667 0.46 0.00 0.00 3.60
3972 4313 5.650703 CCTCCCCATAATACAAGAACGTTTT 59.349 40.000 0.46 0.00 0.00 2.43
3973 4314 6.152154 CCTCCCCATAATACAAGAACGTTTTT 59.848 38.462 0.46 0.00 0.00 1.94
4178 4527 9.997482 ATCGAACGTTAGTGCATAAATAAAATT 57.003 25.926 0.00 0.00 0.00 1.82
4233 4582 7.445402 ACCTAGGCATCATACATGTTTGTATTC 59.555 37.037 9.30 5.61 44.83 1.75
4458 4840 2.040178 GCGGTAGCCCATATAGCCTAT 58.960 52.381 0.00 0.00 37.42 2.57
4459 4841 2.036089 GCGGTAGCCCATATAGCCTATC 59.964 54.545 0.00 0.00 37.42 2.08
4462 4844 3.705072 GGTAGCCCATATAGCCTATCGTT 59.295 47.826 0.00 0.00 0.00 3.85
4503 4885 4.383649 CCATCAGATTGTGCAAAACTTTCG 59.616 41.667 0.00 0.00 0.00 3.46
4511 4893 3.254657 TGTGCAAAACTTTCGAATAGGGG 59.745 43.478 0.00 0.00 0.00 4.79
4514 4896 3.504520 GCAAAACTTTCGAATAGGGGTCA 59.495 43.478 0.00 0.00 0.00 4.02
4694 5101 3.981071 AATGGTCCATCGAGTGAAAGA 57.019 42.857 4.39 0.00 0.00 2.52
4695 5102 3.981071 ATGGTCCATCGAGTGAAAGAA 57.019 42.857 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.809601 GCGTCGCTTGGACATCGT 60.810 61.111 10.68 0.00 46.42 3.73
105 106 1.700042 GGGTAGAGCAGGACATGGGG 61.700 65.000 0.00 0.00 0.00 4.96
122 123 0.107654 GATCCGGTCAAAGGTGAGGG 60.108 60.000 0.00 0.00 33.27 4.30
127 128 0.546747 TCCCAGATCCGGTCAAAGGT 60.547 55.000 0.00 0.00 0.00 3.50
130 131 0.323629 GTGTCCCAGATCCGGTCAAA 59.676 55.000 0.00 0.00 0.00 2.69
131 132 1.884075 CGTGTCCCAGATCCGGTCAA 61.884 60.000 0.00 0.00 0.00 3.18
137 138 2.435693 CCCTCCGTGTCCCAGATCC 61.436 68.421 0.00 0.00 0.00 3.36
140 141 1.911766 GTTCCCTCCGTGTCCCAGA 60.912 63.158 0.00 0.00 0.00 3.86
149 150 1.003718 GTCCCTGTTGTTCCCTCCG 60.004 63.158 0.00 0.00 0.00 4.63
187 188 1.964373 TTTTTCGTCCTGGCTCCGC 60.964 57.895 0.00 0.00 0.00 5.54
188 189 1.866925 GTTTTTCGTCCTGGCTCCG 59.133 57.895 0.00 0.00 0.00 4.63
190 191 0.790814 CTCGTTTTTCGTCCTGGCTC 59.209 55.000 0.00 0.00 40.80 4.70
191 192 0.391597 TCTCGTTTTTCGTCCTGGCT 59.608 50.000 0.00 0.00 40.80 4.75
192 193 0.790814 CTCTCGTTTTTCGTCCTGGC 59.209 55.000 0.00 0.00 40.80 4.85
193 194 1.429463 CCTCTCGTTTTTCGTCCTGG 58.571 55.000 0.00 0.00 40.80 4.45
194 195 1.429463 CCCTCTCGTTTTTCGTCCTG 58.571 55.000 0.00 0.00 40.80 3.86
195 196 0.320697 CCCCTCTCGTTTTTCGTCCT 59.679 55.000 0.00 0.00 40.80 3.85
197 198 1.296755 GCCCCCTCTCGTTTTTCGTC 61.297 60.000 0.00 0.00 40.80 4.20
198 199 1.302271 GCCCCCTCTCGTTTTTCGT 60.302 57.895 0.00 0.00 40.80 3.85
199 200 0.887387 TTGCCCCCTCTCGTTTTTCG 60.887 55.000 0.00 0.00 41.41 3.46
200 201 1.324383 TTTGCCCCCTCTCGTTTTTC 58.676 50.000 0.00 0.00 0.00 2.29
201 202 2.009681 ATTTGCCCCCTCTCGTTTTT 57.990 45.000 0.00 0.00 0.00 1.94
202 203 2.891191 TATTTGCCCCCTCTCGTTTT 57.109 45.000 0.00 0.00 0.00 2.43
203 204 4.724279 ATATATTTGCCCCCTCTCGTTT 57.276 40.909 0.00 0.00 0.00 3.60
204 205 4.595781 TGTATATATTTGCCCCCTCTCGTT 59.404 41.667 0.00 0.00 0.00 3.85
205 206 4.020485 GTGTATATATTTGCCCCCTCTCGT 60.020 45.833 0.00 0.00 0.00 4.18
206 207 4.020573 TGTGTATATATTTGCCCCCTCTCG 60.021 45.833 0.00 0.00 0.00 4.04
207 208 5.499004 TGTGTATATATTTGCCCCCTCTC 57.501 43.478 0.00 0.00 0.00 3.20
208 209 5.922960 TTGTGTATATATTTGCCCCCTCT 57.077 39.130 0.00 0.00 0.00 3.69
209 210 7.539034 AATTTGTGTATATATTTGCCCCCTC 57.461 36.000 0.00 0.00 0.00 4.30
210 211 7.929348 AAATTTGTGTATATATTTGCCCCCT 57.071 32.000 0.00 0.00 0.00 4.79
211 212 8.972458 AAAAATTTGTGTATATATTTGCCCCC 57.028 30.769 0.00 0.00 0.00 5.40
234 235 9.706691 ACTCGTATCTATGTTTCTCAAAGAAAA 57.293 29.630 3.82 0.00 44.84 2.29
235 236 9.706691 AACTCGTATCTATGTTTCTCAAAGAAA 57.293 29.630 0.00 0.00 41.51 2.52
240 241 9.529325 CCATTAACTCGTATCTATGTTTCTCAA 57.471 33.333 0.00 0.00 0.00 3.02
241 242 7.652105 GCCATTAACTCGTATCTATGTTTCTCA 59.348 37.037 0.00 0.00 0.00 3.27
242 243 7.868415 AGCCATTAACTCGTATCTATGTTTCTC 59.132 37.037 0.00 0.00 0.00 2.87
243 244 7.727181 AGCCATTAACTCGTATCTATGTTTCT 58.273 34.615 0.00 0.00 0.00 2.52
244 245 7.948278 AGCCATTAACTCGTATCTATGTTTC 57.052 36.000 0.00 0.00 0.00 2.78
245 246 7.948278 GAGCCATTAACTCGTATCTATGTTT 57.052 36.000 0.00 0.00 0.00 2.83
257 258 8.462143 TTTATAATCGATCGAGCCATTAACTC 57.538 34.615 23.84 0.00 0.00 3.01
258 259 7.063544 GCTTTATAATCGATCGAGCCATTAACT 59.936 37.037 23.84 5.87 0.00 2.24
259 260 7.174082 GCTTTATAATCGATCGAGCCATTAAC 58.826 38.462 23.84 6.54 0.00 2.01
260 261 6.312918 GGCTTTATAATCGATCGAGCCATTAA 59.687 38.462 27.64 17.11 41.86 1.40
261 262 5.810587 GGCTTTATAATCGATCGAGCCATTA 59.189 40.000 27.64 19.70 41.86 1.90
262 263 4.631813 GGCTTTATAATCGATCGAGCCATT 59.368 41.667 27.64 18.41 41.86 3.16
263 264 4.184629 GGCTTTATAATCGATCGAGCCAT 58.815 43.478 27.64 19.97 41.86 4.40
264 265 3.006430 TGGCTTTATAATCGATCGAGCCA 59.994 43.478 30.01 30.01 46.05 4.75
265 266 3.585862 TGGCTTTATAATCGATCGAGCC 58.414 45.455 26.54 26.54 42.27 4.70
266 267 4.143094 GGTTGGCTTTATAATCGATCGAGC 60.143 45.833 23.84 17.92 0.00 5.03
267 268 4.988540 TGGTTGGCTTTATAATCGATCGAG 59.011 41.667 23.84 8.86 0.00 4.04
268 269 4.951254 TGGTTGGCTTTATAATCGATCGA 58.049 39.130 21.86 21.86 0.00 3.59
269 270 4.988540 TCTGGTTGGCTTTATAATCGATCG 59.011 41.667 9.36 9.36 0.00 3.69
270 271 7.440523 AATCTGGTTGGCTTTATAATCGATC 57.559 36.000 0.00 0.00 0.00 3.69
271 272 7.823745 AAATCTGGTTGGCTTTATAATCGAT 57.176 32.000 0.00 0.00 0.00 3.59
272 273 8.740123 TTAAATCTGGTTGGCTTTATAATCGA 57.260 30.769 0.00 0.00 0.00 3.59
273 274 9.796120 TTTTAAATCTGGTTGGCTTTATAATCG 57.204 29.630 0.00 0.00 0.00 3.34
276 277 9.921637 CACTTTTAAATCTGGTTGGCTTTATAA 57.078 29.630 0.00 0.00 0.00 0.98
277 278 9.303116 TCACTTTTAAATCTGGTTGGCTTTATA 57.697 29.630 0.00 0.00 0.00 0.98
278 279 8.189119 TCACTTTTAAATCTGGTTGGCTTTAT 57.811 30.769 0.00 0.00 0.00 1.40
279 280 7.589958 TCACTTTTAAATCTGGTTGGCTTTA 57.410 32.000 0.00 0.00 0.00 1.85
280 281 6.478512 TCACTTTTAAATCTGGTTGGCTTT 57.521 33.333 0.00 0.00 0.00 3.51
281 282 6.478512 TTCACTTTTAAATCTGGTTGGCTT 57.521 33.333 0.00 0.00 0.00 4.35
282 283 6.670695 ATTCACTTTTAAATCTGGTTGGCT 57.329 33.333 0.00 0.00 0.00 4.75
283 284 7.728847 AAATTCACTTTTAAATCTGGTTGGC 57.271 32.000 0.00 0.00 0.00 4.52
312 313 9.961265 AATCTAGATTCACGTCGTAATTTCATA 57.039 29.630 12.37 0.00 0.00 2.15
313 314 8.873215 AATCTAGATTCACGTCGTAATTTCAT 57.127 30.769 12.37 0.00 0.00 2.57
314 315 8.336498 GAATCTAGATTCACGTCGTAATTTCA 57.664 34.615 31.72 0.00 44.89 2.69
335 336 8.937634 AAATTGGCAAGTAGATTGATTGAATC 57.062 30.769 5.96 0.00 41.83 2.52
341 342 9.643693 CACTTTTAAATTGGCAAGTAGATTGAT 57.356 29.630 5.96 0.00 41.83 2.57
342 343 8.855110 TCACTTTTAAATTGGCAAGTAGATTGA 58.145 29.630 5.96 0.00 41.83 2.57
343 344 9.474920 TTCACTTTTAAATTGGCAAGTAGATTG 57.525 29.630 5.96 0.00 42.20 2.67
365 366 9.495754 GCTTCATCTGTTGAGTATAAATTTCAC 57.504 33.333 0.00 0.00 35.27 3.18
366 367 8.677300 GGCTTCATCTGTTGAGTATAAATTTCA 58.323 33.333 0.00 0.00 35.27 2.69
367 368 7.852945 CGGCTTCATCTGTTGAGTATAAATTTC 59.147 37.037 0.00 0.00 35.27 2.17
368 369 7.679638 GCGGCTTCATCTGTTGAGTATAAATTT 60.680 37.037 0.00 0.00 35.27 1.82
369 370 6.238484 GCGGCTTCATCTGTTGAGTATAAATT 60.238 38.462 0.00 0.00 35.27 1.82
370 371 5.237344 GCGGCTTCATCTGTTGAGTATAAAT 59.763 40.000 0.00 0.00 35.27 1.40
371 372 4.570772 GCGGCTTCATCTGTTGAGTATAAA 59.429 41.667 0.00 0.00 35.27 1.40
372 373 4.119862 GCGGCTTCATCTGTTGAGTATAA 58.880 43.478 0.00 0.00 35.27 0.98
373 374 3.384789 AGCGGCTTCATCTGTTGAGTATA 59.615 43.478 0.00 0.00 35.27 1.47
374 375 2.169352 AGCGGCTTCATCTGTTGAGTAT 59.831 45.455 0.00 0.00 35.27 2.12
375 376 1.550524 AGCGGCTTCATCTGTTGAGTA 59.449 47.619 0.00 0.00 35.27 2.59
376 377 0.322975 AGCGGCTTCATCTGTTGAGT 59.677 50.000 0.00 0.00 35.27 3.41
377 378 1.129998 CAAGCGGCTTCATCTGTTGAG 59.870 52.381 13.24 0.00 35.27 3.02
378 379 1.159285 CAAGCGGCTTCATCTGTTGA 58.841 50.000 13.24 0.00 0.00 3.18
379 380 0.877071 ACAAGCGGCTTCATCTGTTG 59.123 50.000 13.24 2.15 0.00 3.33
380 381 1.537202 GAACAAGCGGCTTCATCTGTT 59.463 47.619 13.24 14.18 0.00 3.16
381 382 1.160137 GAACAAGCGGCTTCATCTGT 58.840 50.000 13.24 5.27 0.00 3.41
382 383 1.135859 GTGAACAAGCGGCTTCATCTG 60.136 52.381 13.24 4.54 0.00 2.90
383 384 1.160137 GTGAACAAGCGGCTTCATCT 58.840 50.000 13.24 0.00 0.00 2.90
384 385 1.129437 GAGTGAACAAGCGGCTTCATC 59.871 52.381 13.24 13.91 0.00 2.92
385 386 1.160137 GAGTGAACAAGCGGCTTCAT 58.840 50.000 13.24 4.24 0.00 2.57
386 387 1.221466 CGAGTGAACAAGCGGCTTCA 61.221 55.000 13.24 5.43 0.00 3.02
387 388 1.222115 ACGAGTGAACAAGCGGCTTC 61.222 55.000 13.24 2.41 0.00 3.86
388 389 0.814010 AACGAGTGAACAAGCGGCTT 60.814 50.000 9.94 9.94 0.00 4.35
389 390 0.814010 AAACGAGTGAACAAGCGGCT 60.814 50.000 0.00 0.00 0.00 5.52
390 391 0.028902 AAAACGAGTGAACAAGCGGC 59.971 50.000 0.00 0.00 0.00 6.53
391 392 2.468532 AAAAACGAGTGAACAAGCGG 57.531 45.000 0.00 0.00 0.00 5.52
429 430 0.469144 ACATGCCCCCACTCGTTTTT 60.469 50.000 0.00 0.00 0.00 1.94
430 431 0.402504 TACATGCCCCCACTCGTTTT 59.597 50.000 0.00 0.00 0.00 2.43
431 432 0.402504 TTACATGCCCCCACTCGTTT 59.597 50.000 0.00 0.00 0.00 3.60
432 433 0.623723 ATTACATGCCCCCACTCGTT 59.376 50.000 0.00 0.00 0.00 3.85
433 434 0.623723 AATTACATGCCCCCACTCGT 59.376 50.000 0.00 0.00 0.00 4.18
434 435 1.762708 AAATTACATGCCCCCACTCG 58.237 50.000 0.00 0.00 0.00 4.18
435 436 4.892934 TCATAAAATTACATGCCCCCACTC 59.107 41.667 0.00 0.00 0.00 3.51
436 437 4.877773 TCATAAAATTACATGCCCCCACT 58.122 39.130 0.00 0.00 0.00 4.00
437 438 5.606348 TTCATAAAATTACATGCCCCCAC 57.394 39.130 0.00 0.00 0.00 4.61
438 439 6.821616 AATTCATAAAATTACATGCCCCCA 57.178 33.333 0.00 0.00 0.00 4.96
439 440 8.518430 AAAAATTCATAAAATTACATGCCCCC 57.482 30.769 0.00 0.00 0.00 5.40
463 464 9.672673 TCAATAAAATTCACCCTTTGTCAAAAA 57.327 25.926 0.00 0.00 0.00 1.94
464 465 9.103861 GTCAATAAAATTCACCCTTTGTCAAAA 57.896 29.630 0.00 0.00 0.00 2.44
465 466 8.482128 AGTCAATAAAATTCACCCTTTGTCAAA 58.518 29.630 0.00 0.00 0.00 2.69
466 467 8.017418 AGTCAATAAAATTCACCCTTTGTCAA 57.983 30.769 0.00 0.00 0.00 3.18
467 468 7.286546 TGAGTCAATAAAATTCACCCTTTGTCA 59.713 33.333 0.00 0.00 0.00 3.58
468 469 7.657336 TGAGTCAATAAAATTCACCCTTTGTC 58.343 34.615 0.00 0.00 0.00 3.18
469 470 7.505585 TCTGAGTCAATAAAATTCACCCTTTGT 59.494 33.333 0.00 0.00 0.00 2.83
470 471 7.885297 TCTGAGTCAATAAAATTCACCCTTTG 58.115 34.615 0.00 0.00 0.00 2.77
471 472 8.526147 CATCTGAGTCAATAAAATTCACCCTTT 58.474 33.333 0.00 0.00 0.00 3.11
472 473 7.890127 TCATCTGAGTCAATAAAATTCACCCTT 59.110 33.333 0.00 0.00 0.00 3.95
473 474 7.405292 TCATCTGAGTCAATAAAATTCACCCT 58.595 34.615 0.00 0.00 0.00 4.34
474 475 7.630242 TCATCTGAGTCAATAAAATTCACCC 57.370 36.000 0.00 0.00 0.00 4.61
475 476 7.699812 GCTTCATCTGAGTCAATAAAATTCACC 59.300 37.037 0.00 0.00 0.00 4.02
476 477 8.239314 TGCTTCATCTGAGTCAATAAAATTCAC 58.761 33.333 0.00 0.00 0.00 3.18
477 478 8.339344 TGCTTCATCTGAGTCAATAAAATTCA 57.661 30.769 0.00 0.00 0.00 2.57
478 479 9.448294 GATGCTTCATCTGAGTCAATAAAATTC 57.552 33.333 0.00 0.00 37.82 2.17
479 480 8.963725 TGATGCTTCATCTGAGTCAATAAAATT 58.036 29.630 8.11 0.00 41.06 1.82
480 481 8.515695 TGATGCTTCATCTGAGTCAATAAAAT 57.484 30.769 8.11 0.00 41.06 1.82
481 482 7.926674 TGATGCTTCATCTGAGTCAATAAAA 57.073 32.000 8.11 0.00 41.06 1.52
482 483 7.609146 ACTTGATGCTTCATCTGAGTCAATAAA 59.391 33.333 2.75 0.00 41.06 1.40
483 484 7.065443 CACTTGATGCTTCATCTGAGTCAATAA 59.935 37.037 2.75 0.00 41.06 1.40
484 485 6.537660 CACTTGATGCTTCATCTGAGTCAATA 59.462 38.462 2.75 0.00 41.06 1.90
485 486 5.354513 CACTTGATGCTTCATCTGAGTCAAT 59.645 40.000 2.75 0.00 41.06 2.57
486 487 4.694037 CACTTGATGCTTCATCTGAGTCAA 59.306 41.667 2.75 0.00 41.06 3.18
487 488 4.251268 CACTTGATGCTTCATCTGAGTCA 58.749 43.478 2.75 0.00 41.06 3.41
488 489 3.622163 CCACTTGATGCTTCATCTGAGTC 59.378 47.826 2.75 0.00 41.06 3.36
489 490 3.262660 TCCACTTGATGCTTCATCTGAGT 59.737 43.478 2.75 1.26 41.06 3.41
490 491 3.870274 TCCACTTGATGCTTCATCTGAG 58.130 45.455 2.75 0.64 41.06 3.35
491 492 3.986996 TCCACTTGATGCTTCATCTGA 57.013 42.857 2.75 0.00 41.06 3.27
492 493 5.121105 TGTATCCACTTGATGCTTCATCTG 58.879 41.667 2.75 2.20 41.06 2.90
493 494 5.363562 TGTATCCACTTGATGCTTCATCT 57.636 39.130 2.75 0.00 41.06 2.90
494 495 6.127925 TGTTTGTATCCACTTGATGCTTCATC 60.128 38.462 2.75 0.13 40.88 2.92
495 496 5.711506 TGTTTGTATCCACTTGATGCTTCAT 59.288 36.000 2.75 0.00 37.04 2.57
496 497 5.048782 GTGTTTGTATCCACTTGATGCTTCA 60.049 40.000 0.00 0.00 37.04 3.02
497 498 5.048782 TGTGTTTGTATCCACTTGATGCTTC 60.049 40.000 0.00 0.00 37.04 3.86
498 499 4.826733 TGTGTTTGTATCCACTTGATGCTT 59.173 37.500 0.00 0.00 37.04 3.91
499 500 4.397420 TGTGTTTGTATCCACTTGATGCT 58.603 39.130 0.00 0.00 37.04 3.79
500 501 4.764679 TGTGTTTGTATCCACTTGATGC 57.235 40.909 0.00 0.00 36.68 3.91
501 502 6.912082 TCATTGTGTTTGTATCCACTTGATG 58.088 36.000 0.00 0.00 34.76 3.07
502 503 6.349611 GCTCATTGTGTTTGTATCCACTTGAT 60.350 38.462 0.00 0.00 37.49 2.57
503 504 5.048782 GCTCATTGTGTTTGTATCCACTTGA 60.049 40.000 0.00 0.00 32.76 3.02
504 505 5.156355 GCTCATTGTGTTTGTATCCACTTG 58.844 41.667 0.00 0.00 32.76 3.16
505 506 4.826733 TGCTCATTGTGTTTGTATCCACTT 59.173 37.500 0.00 0.00 32.76 3.16
506 507 4.216257 GTGCTCATTGTGTTTGTATCCACT 59.784 41.667 0.00 0.00 32.76 4.00
507 508 4.023279 TGTGCTCATTGTGTTTGTATCCAC 60.023 41.667 0.00 0.00 0.00 4.02
508 509 4.023279 GTGTGCTCATTGTGTTTGTATCCA 60.023 41.667 0.00 0.00 0.00 3.41
509 510 4.023279 TGTGTGCTCATTGTGTTTGTATCC 60.023 41.667 0.00 0.00 0.00 2.59
510 511 5.107109 TGTGTGCTCATTGTGTTTGTATC 57.893 39.130 0.00 0.00 0.00 2.24
511 512 5.335897 GGATGTGTGCTCATTGTGTTTGTAT 60.336 40.000 0.00 0.00 0.00 2.29
512 513 4.023279 GGATGTGTGCTCATTGTGTTTGTA 60.023 41.667 0.00 0.00 0.00 2.41
513 514 3.243501 GGATGTGTGCTCATTGTGTTTGT 60.244 43.478 0.00 0.00 0.00 2.83
514 515 3.311106 GGATGTGTGCTCATTGTGTTTG 58.689 45.455 0.00 0.00 0.00 2.93
515 516 2.030893 CGGATGTGTGCTCATTGTGTTT 60.031 45.455 0.00 0.00 0.00 2.83
516 517 1.536766 CGGATGTGTGCTCATTGTGTT 59.463 47.619 0.00 0.00 0.00 3.32
517 518 1.159285 CGGATGTGTGCTCATTGTGT 58.841 50.000 0.00 0.00 0.00 3.72
518 519 0.448990 CCGGATGTGTGCTCATTGTG 59.551 55.000 0.00 0.00 0.00 3.33
519 520 0.036732 ACCGGATGTGTGCTCATTGT 59.963 50.000 9.46 0.00 0.00 2.71
520 521 0.729116 GACCGGATGTGTGCTCATTG 59.271 55.000 9.46 0.00 0.00 2.82
521 522 0.615331 AGACCGGATGTGTGCTCATT 59.385 50.000 9.46 0.00 0.00 2.57
522 523 0.176680 GAGACCGGATGTGTGCTCAT 59.823 55.000 9.46 0.00 0.00 2.90
523 524 0.900182 AGAGACCGGATGTGTGCTCA 60.900 55.000 9.46 0.00 0.00 4.26
524 525 1.103803 TAGAGACCGGATGTGTGCTC 58.896 55.000 9.46 2.96 0.00 4.26
525 526 1.557099 TTAGAGACCGGATGTGTGCT 58.443 50.000 9.46 0.00 0.00 4.40
526 527 2.205074 CATTAGAGACCGGATGTGTGC 58.795 52.381 9.46 0.00 0.00 4.57
527 528 3.526931 ACATTAGAGACCGGATGTGTG 57.473 47.619 9.46 0.12 31.94 3.82
528 529 5.871396 ATTACATTAGAGACCGGATGTGT 57.129 39.130 9.46 5.57 34.76 3.72
529 530 7.553881 AAAATTACATTAGAGACCGGATGTG 57.446 36.000 9.46 0.00 34.76 3.21
530 531 9.273016 CATAAAATTACATTAGAGACCGGATGT 57.727 33.333 9.46 9.15 36.72 3.06
531 532 9.489084 TCATAAAATTACATTAGAGACCGGATG 57.511 33.333 9.46 2.00 0.00 3.51
562 563 7.484035 AGCGAGTACCTCATTTTAAATCATC 57.516 36.000 0.00 0.00 0.00 2.92
570 571 4.213482 GTGAACAAGCGAGTACCTCATTTT 59.787 41.667 0.00 0.00 0.00 1.82
578 579 2.327081 TCGAGTGAACAAGCGAGTAC 57.673 50.000 0.00 0.00 0.00 2.73
579 580 3.570926 ATTCGAGTGAACAAGCGAGTA 57.429 42.857 0.00 0.00 36.81 2.59
584 585 7.965045 AGACTTAAATATTCGAGTGAACAAGC 58.035 34.615 8.04 0.00 36.81 4.01
585 586 9.746711 CAAGACTTAAATATTCGAGTGAACAAG 57.253 33.333 8.04 0.00 36.81 3.16
587 588 8.922676 GTCAAGACTTAAATATTCGAGTGAACA 58.077 33.333 8.04 0.00 36.81 3.18
588 589 8.381387 GGTCAAGACTTAAATATTCGAGTGAAC 58.619 37.037 8.04 1.00 36.81 3.18
589 590 7.274904 CGGTCAAGACTTAAATATTCGAGTGAA 59.725 37.037 8.04 0.00 38.76 3.18
590 591 6.750501 CGGTCAAGACTTAAATATTCGAGTGA 59.249 38.462 8.04 0.00 0.00 3.41
591 592 6.019801 CCGGTCAAGACTTAAATATTCGAGTG 60.020 42.308 8.04 0.00 0.00 3.51
593 594 6.040878 ACCGGTCAAGACTTAAATATTCGAG 58.959 40.000 0.00 0.00 0.00 4.04
594 595 5.969423 ACCGGTCAAGACTTAAATATTCGA 58.031 37.500 0.00 0.00 0.00 3.71
595 596 5.808540 TGACCGGTCAAGACTTAAATATTCG 59.191 40.000 34.60 0.00 36.53 3.34
596 597 7.787725 ATGACCGGTCAAGACTTAAATATTC 57.212 36.000 39.04 6.19 43.58 1.75
597 598 7.610305 ACAATGACCGGTCAAGACTTAAATATT 59.390 33.333 39.04 21.55 43.58 1.28
604 605 2.550208 GGACAATGACCGGTCAAGACTT 60.550 50.000 39.04 26.02 43.58 3.01
608 609 2.456000 CGGACAATGACCGGTCAAG 58.544 57.895 39.04 33.08 45.65 3.02
620 621 1.954146 GTTGAGTGCTCGCGGACAA 60.954 57.895 6.13 1.49 33.37 3.18
624 625 3.000080 GAACGTTGAGTGCTCGCGG 62.000 63.158 5.00 0.00 35.81 6.46
626 627 1.488957 CAGAACGTTGAGTGCTCGC 59.511 57.895 5.00 0.00 36.30 5.03
629 630 0.601311 GCTCCAGAACGTTGAGTGCT 60.601 55.000 5.00 0.00 40.09 4.40
630 631 1.862806 GCTCCAGAACGTTGAGTGC 59.137 57.895 5.00 2.76 0.00 4.40
632 633 0.387929 TTCGCTCCAGAACGTTGAGT 59.612 50.000 5.00 0.00 0.00 3.41
634 635 2.163818 AATTCGCTCCAGAACGTTGA 57.836 45.000 5.00 0.00 32.39 3.18
636 637 2.604614 GCAAAATTCGCTCCAGAACGTT 60.605 45.455 0.00 0.00 32.39 3.99
637 638 1.069227 GCAAAATTCGCTCCAGAACGT 60.069 47.619 0.00 0.00 32.39 3.99
638 639 1.606606 GCAAAATTCGCTCCAGAACG 58.393 50.000 0.00 0.00 32.39 3.95
639 640 1.729149 CGGCAAAATTCGCTCCAGAAC 60.729 52.381 0.41 0.00 32.39 3.01
640 641 0.521291 CGGCAAAATTCGCTCCAGAA 59.479 50.000 0.41 0.00 34.31 3.02
642 643 1.137404 CCGGCAAAATTCGCTCCAG 59.863 57.895 0.00 0.00 0.00 3.86
644 645 2.266376 GACCCGGCAAAATTCGCTCC 62.266 60.000 0.00 0.00 0.00 4.70
646 647 2.340328 GGACCCGGCAAAATTCGCT 61.340 57.895 0.00 0.00 0.00 4.93
648 649 0.530288 ATTGGACCCGGCAAAATTCG 59.470 50.000 0.00 0.00 0.00 3.34
649 650 2.289382 ACAATTGGACCCGGCAAAATTC 60.289 45.455 10.83 0.00 0.00 2.17
657 658 1.134098 AGCATCTACAATTGGACCCGG 60.134 52.381 10.83 0.00 0.00 5.73
658 659 2.332063 AGCATCTACAATTGGACCCG 57.668 50.000 10.83 0.00 0.00 5.28
659 660 5.417580 TGTAAAAGCATCTACAATTGGACCC 59.582 40.000 10.83 0.00 0.00 4.46
675 676 2.791004 CACAAGCTGCTGTTGTAAAAGC 59.209 45.455 1.35 0.00 35.93 3.51
676 677 3.066621 TCCACAAGCTGCTGTTGTAAAAG 59.933 43.478 1.35 0.00 35.93 2.27
678 679 2.618241 CTCCACAAGCTGCTGTTGTAAA 59.382 45.455 1.35 0.00 35.93 2.01
681 682 0.107017 ACTCCACAAGCTGCTGTTGT 60.107 50.000 1.35 1.28 38.71 3.32
684 685 1.895707 GCACTCCACAAGCTGCTGT 60.896 57.895 1.35 0.48 32.56 4.40
685 686 2.952245 GCACTCCACAAGCTGCTG 59.048 61.111 1.35 0.00 32.56 4.41
686 687 2.667536 CGCACTCCACAAGCTGCT 60.668 61.111 0.00 0.00 32.90 4.24
758 793 6.976636 AAAACATGCGAAAAGAAAAGGAAA 57.023 29.167 0.00 0.00 0.00 3.13
759 794 6.976636 AAAAACATGCGAAAAGAAAAGGAA 57.023 29.167 0.00 0.00 0.00 3.36
1108 1153 0.448593 GACGACTCTCTGGAGGTTCG 59.551 60.000 15.16 15.16 43.46 3.95
1143 1188 2.125673 CTAACGCAGGGTGGGACG 60.126 66.667 0.00 0.00 34.12 4.79
1147 1192 0.673644 CCAACTCTAACGCAGGGTGG 60.674 60.000 0.00 0.00 36.76 4.61
1157 1202 1.207089 CCCAGATCGCACCAACTCTAA 59.793 52.381 0.00 0.00 0.00 2.10
1193 1238 3.002759 TCTCTGCGTCGTCTCATCTAATG 59.997 47.826 0.00 0.00 0.00 1.90
1194 1239 3.206964 TCTCTGCGTCGTCTCATCTAAT 58.793 45.455 0.00 0.00 0.00 1.73
1195 1240 2.609916 CTCTCTGCGTCGTCTCATCTAA 59.390 50.000 0.00 0.00 0.00 2.10
1196 1241 2.205911 CTCTCTGCGTCGTCTCATCTA 58.794 52.381 0.00 0.00 0.00 1.98
1197 1242 1.013596 CTCTCTGCGTCGTCTCATCT 58.986 55.000 0.00 0.00 0.00 2.90
1233 1278 6.547880 AGAGGAGTGAATAGTGGTATGTAGTG 59.452 42.308 0.00 0.00 0.00 2.74
1278 1335 2.932614 CGGAATTCATATCATCGGAGGC 59.067 50.000 7.93 0.00 0.00 4.70
1309 1366 2.124570 CCCCAATCTGACCCAGCG 60.125 66.667 0.00 0.00 0.00 5.18
1344 1402 2.707849 GCATGGGAGTGCTTGGCAG 61.708 63.158 0.00 0.00 40.08 4.85
1418 1476 5.346822 GTCTGAAATTAAGTTTGCATGGCAG 59.653 40.000 0.00 0.00 40.61 4.85
1461 1519 4.692228 TCGCTGCTGTATTGATGTATTGA 58.308 39.130 0.00 0.00 0.00 2.57
1466 1524 2.910199 ACATCGCTGCTGTATTGATGT 58.090 42.857 11.23 11.23 43.42 3.06
1467 1525 3.957671 AACATCGCTGCTGTATTGATG 57.042 42.857 10.18 10.18 41.60 3.07
1469 1527 5.276820 CGAATAAACATCGCTGCTGTATTGA 60.277 40.000 0.00 0.00 33.07 2.57
1471 1529 4.570772 ACGAATAAACATCGCTGCTGTATT 59.429 37.500 0.00 0.00 43.88 1.89
1473 1531 3.517602 ACGAATAAACATCGCTGCTGTA 58.482 40.909 0.00 0.00 43.88 2.74
1474 1532 2.346803 ACGAATAAACATCGCTGCTGT 58.653 42.857 0.00 0.00 43.88 4.40
1475 1533 3.389687 AACGAATAAACATCGCTGCTG 57.610 42.857 0.00 0.00 43.88 4.41
1477 1535 4.381566 ACAAAAACGAATAAACATCGCTGC 59.618 37.500 0.00 0.00 43.88 5.25
1478 1536 5.851177 AGACAAAAACGAATAAACATCGCTG 59.149 36.000 0.00 0.00 43.88 5.18
1479 1537 5.997385 AGACAAAAACGAATAAACATCGCT 58.003 33.333 0.00 0.00 43.88 4.93
1489 1581 6.430451 GTGTCAATCAGAGACAAAAACGAAT 58.570 36.000 0.00 0.00 46.50 3.34
1493 1589 5.156804 ACGTGTCAATCAGAGACAAAAAC 57.843 39.130 0.00 0.00 46.50 2.43
1503 1599 7.684062 ATTCAAAAGAAAACGTGTCAATCAG 57.316 32.000 0.00 0.00 0.00 2.90
1723 1819 2.237143 CTGTACTGGCTCATCTTTCCCA 59.763 50.000 0.00 0.00 0.00 4.37
1807 1905 2.030540 GGATGGATCACATTCGCCAATG 60.031 50.000 2.17 2.17 44.57 2.82
1810 1908 0.179020 GGGATGGATCACATTCGCCA 60.179 55.000 0.00 0.00 40.72 5.69
1879 1977 6.542821 ACAAATGACTAGAAAATCACCTCCA 58.457 36.000 0.00 0.00 0.00 3.86
1912 2010 2.802816 CAACTACACACAACCAGAGAGC 59.197 50.000 0.00 0.00 0.00 4.09
1951 2057 9.888878 CAGGTTTATATGCATGATAGAAACAAG 57.111 33.333 22.44 15.78 45.02 3.16
1955 2061 9.440773 CTAGCAGGTTTATATGCATGATAGAAA 57.559 33.333 10.16 0.00 45.01 2.52
2087 2220 0.321564 TGGATGAGCCCGTCAGTTTG 60.322 55.000 0.00 0.00 39.07 2.93
2347 2487 0.179004 TGTGCCAACCGTCCAATTCT 60.179 50.000 0.00 0.00 0.00 2.40
2393 2542 9.729023 CACACTGATAGAGAAACTAACTATGAG 57.271 37.037 0.00 0.00 35.26 2.90
2424 2573 7.275999 GGTCTACAACTGATAGCACTAGTTTTC 59.724 40.741 0.00 0.00 32.69 2.29
2571 2729 3.679824 AAAAGTTCTACAGGGACTCCG 57.320 47.619 0.00 0.00 34.60 4.63
2593 2751 2.763249 GTGTTCTTGAGGCAACACTG 57.237 50.000 9.72 0.00 45.97 3.66
2979 3159 3.988379 TCAGAACACTCCATGCAAAAC 57.012 42.857 0.00 0.00 0.00 2.43
3264 3527 7.562412 CGTCTGAATTAATAATGACAGCAGAG 58.438 38.462 12.35 0.00 31.36 3.35
3266 3529 6.132056 GCGTCTGAATTAATAATGACAGCAG 58.868 40.000 12.35 10.35 0.00 4.24
3267 3530 5.584251 TGCGTCTGAATTAATAATGACAGCA 59.416 36.000 18.04 18.04 34.50 4.41
3268 3531 6.048073 TGCGTCTGAATTAATAATGACAGC 57.952 37.500 12.35 13.99 0.00 4.40
3405 3679 1.792949 GAGTAAGCCGCATTGGTATCG 59.207 52.381 0.00 0.00 41.21 2.92
3468 3742 4.572966 ACGGAGTTTGACACATAGTCCCA 61.573 47.826 0.00 0.00 43.04 4.37
3557 3831 2.816672 CAGCTTCTTTCTTCCCTCCAAC 59.183 50.000 0.00 0.00 0.00 3.77
3598 3872 0.898320 AGTCATCTCCCCAGTTGTCG 59.102 55.000 0.00 0.00 0.00 4.35
3730 4006 2.889512 AGGCGGTGATATAGACATCCA 58.110 47.619 0.00 0.00 0.00 3.41
3745 4021 2.296471 ACACGAGAGGAAATATAGGCGG 59.704 50.000 0.00 0.00 0.00 6.13
3757 4033 4.233789 CTCTTCAAGAAAGACACGAGAGG 58.766 47.826 0.00 0.00 39.12 3.69
3788 4066 5.871396 ATCTATCCGAAAAGCTAAGTGGA 57.129 39.130 0.00 0.00 0.00 4.02
3791 4069 5.234543 GCGAAATCTATCCGAAAAGCTAAGT 59.765 40.000 0.00 0.00 0.00 2.24
3802 4080 2.554462 TCTCCTCAGCGAAATCTATCCG 59.446 50.000 0.00 0.00 0.00 4.18
3927 4206 4.455877 AGGCAGCATAAACAAGTACAGAAC 59.544 41.667 0.00 0.00 0.00 3.01
3948 4289 4.417426 ACGTTCTTGTATTATGGGGAGG 57.583 45.455 0.00 0.00 0.00 4.30
3949 4290 6.753107 AAAACGTTCTTGTATTATGGGGAG 57.247 37.500 0.00 0.00 0.00 4.30
4233 4582 9.121658 GTAACTATCTTTAGAAATTCCCCCAAG 57.878 37.037 0.00 0.00 0.00 3.61
4283 4633 9.927668 CCAAATAATTGTAGAATGGAGTTTTGT 57.072 29.630 0.00 0.00 34.60 2.83
4480 4862 4.383649 CGAAAGTTTTGCACAATCTGATGG 59.616 41.667 0.00 0.00 0.00 3.51
4481 4863 5.214417 TCGAAAGTTTTGCACAATCTGATG 58.786 37.500 0.00 0.00 0.00 3.07
4503 4885 1.947456 GGCACGATTTGACCCCTATTC 59.053 52.381 0.00 0.00 0.00 1.75
4511 4893 2.286772 ACGAAGTTTGGCACGATTTGAC 60.287 45.455 1.25 0.00 37.78 3.18
4695 5102 2.817844 GTCGACCTAATGCCCAGTTTTT 59.182 45.455 3.51 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.