Multiple sequence alignment - TraesCS1B01G441600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G441600 chr1B 100.000 4049 0 0 1 4049 662556078 662552030 0.000000e+00 7478.0
1 TraesCS1B01G441600 chr1D 93.250 4015 149 50 1 3964 476256839 476252896 0.000000e+00 5801.0
2 TraesCS1B01G441600 chr1D 95.455 88 2 2 3297 3382 307349242 307349155 5.460000e-29 139.0
3 TraesCS1B01G441600 chr1A 93.155 3813 152 56 224 3948 572019948 572016157 0.000000e+00 5494.0
4 TraesCS1B01G441600 chr1A 95.238 189 7 2 1 189 572020133 572019947 8.510000e-77 298.0
5 TraesCS1B01G441600 chr1A 100.000 30 0 0 4020 4049 572016140 572016111 5.650000e-04 56.5
6 TraesCS1B01G441600 chr2B 91.663 2135 177 1 995 3128 143272708 143274842 0.000000e+00 2955.0
7 TraesCS1B01G441600 chr2D 91.454 2153 178 4 995 3147 90500453 90502599 0.000000e+00 2952.0
8 TraesCS1B01G441600 chr2A 90.989 2153 193 1 995 3147 90416103 90418254 0.000000e+00 2900.0
9 TraesCS1B01G441600 chr7D 94.624 93 2 3 3300 3390 6744965 6744874 1.520000e-29 141.0
10 TraesCS1B01G441600 chr7D 92.708 96 4 2 3297 3389 54836100 54836195 7.060000e-28 135.0
11 TraesCS1B01G441600 chr5B 95.506 89 2 2 3300 3386 251577551 251577463 1.520000e-29 141.0
12 TraesCS1B01G441600 chr5B 100.000 34 0 0 194 227 21599796 21599763 3.380000e-06 63.9
13 TraesCS1B01G441600 chr4D 93.548 93 4 1 3300 3390 19395048 19394956 1.960000e-28 137.0
14 TraesCS1B01G441600 chr7A 92.708 96 4 2 3297 3389 58226128 58226033 7.060000e-28 135.0
15 TraesCS1B01G441600 chrUn 90.291 103 4 5 3285 3383 104889336 104889236 3.280000e-26 130.0
16 TraesCS1B01G441600 chr3A 100.000 29 0 0 194 222 699620122 699620094 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G441600 chr1B 662552030 662556078 4048 True 7478.0 7478 100.000 1 4049 1 chr1B.!!$R1 4048
1 TraesCS1B01G441600 chr1D 476252896 476256839 3943 True 5801.0 5801 93.250 1 3964 1 chr1D.!!$R2 3963
2 TraesCS1B01G441600 chr1A 572016111 572020133 4022 True 1949.5 5494 96.131 1 4049 3 chr1A.!!$R1 4048
3 TraesCS1B01G441600 chr2B 143272708 143274842 2134 False 2955.0 2955 91.663 995 3128 1 chr2B.!!$F1 2133
4 TraesCS1B01G441600 chr2D 90500453 90502599 2146 False 2952.0 2952 91.454 995 3147 1 chr2D.!!$F1 2152
5 TraesCS1B01G441600 chr2A 90416103 90418254 2151 False 2900.0 2900 90.989 995 3147 1 chr2A.!!$F1 2152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 1061 1.206371 CATTAGGTCGACCGTCCCTTT 59.794 52.381 28.26 12.08 42.08 3.11 F
1608 1704 0.820226 TGAGAAGCATGGTCGGAGAG 59.180 55.000 0.00 0.00 36.95 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2116 0.773644 ACAGACAGAGCACCCCAATT 59.226 50.0 0.0 0.0 0.0 2.32 R
3059 3155 2.827800 CTCTGGAGCTTCTGACAACA 57.172 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 189 4.451096 ACGGTTCTGTACTTGTTTATGCTG 59.549 41.667 0.00 0.00 0.00 4.41
201 205 4.105537 TGTTTATGCTGCCTCCCCATAATA 59.894 41.667 0.00 0.00 33.09 0.98
419 455 9.997482 ATCGAACGTTAGTGCATAAATAAAATT 57.003 25.926 0.00 0.00 0.00 1.82
474 510 7.445402 ACCTAGGCATCATACATGTTTGTATTC 59.555 37.037 9.30 5.61 44.83 1.75
699 769 2.040178 GCGGTAGCCCATATAGCCTAT 58.960 52.381 0.00 0.00 37.42 2.57
700 770 2.036089 GCGGTAGCCCATATAGCCTATC 59.964 54.545 0.00 0.00 37.42 2.08
703 773 3.705072 GGTAGCCCATATAGCCTATCGTT 59.295 47.826 0.00 0.00 0.00 3.85
744 814 4.383649 CCATCAGATTGTGCAAAACTTTCG 59.616 41.667 0.00 0.00 0.00 3.46
752 822 3.254657 TGTGCAAAACTTTCGAATAGGGG 59.745 43.478 0.00 0.00 0.00 4.79
755 825 3.504520 GCAAAACTTTCGAATAGGGGTCA 59.495 43.478 0.00 0.00 0.00 4.02
935 1030 3.981071 AATGGTCCATCGAGTGAAAGA 57.019 42.857 4.39 0.00 0.00 2.52
936 1031 3.981071 ATGGTCCATCGAGTGAAAGAA 57.019 42.857 0.00 0.00 0.00 2.52
966 1061 1.206371 CATTAGGTCGACCGTCCCTTT 59.794 52.381 28.26 12.08 42.08 3.11
967 1062 1.341080 TTAGGTCGACCGTCCCTTTT 58.659 50.000 28.26 11.32 42.08 2.27
1473 1569 2.048222 TACTGCCAGTGCGCTCAC 60.048 61.111 9.73 0.00 43.44 3.51
1521 1617 0.874607 GTGTGTCTGGTTTCGACGCT 60.875 55.000 0.00 0.00 41.26 5.07
1608 1704 0.820226 TGAGAAGCATGGTCGGAGAG 59.180 55.000 0.00 0.00 36.95 3.20
1781 1877 1.168714 GGGAAATGTGAGTGTGCCTC 58.831 55.000 0.00 0.00 40.89 4.70
1815 1911 1.600413 GCGTTTGAGGTTTTGCCAGAG 60.600 52.381 0.00 0.00 40.61 3.35
1917 2013 9.989296 TTCTTAGATTTGGAAATGGAAGGAATA 57.011 29.630 0.00 0.00 0.00 1.75
2019 2115 1.815408 GCCTCTGCTGTGAAAACTGGA 60.815 52.381 0.00 0.00 33.53 3.86
2020 2116 2.575532 CCTCTGCTGTGAAAACTGGAA 58.424 47.619 0.00 0.00 0.00 3.53
2221 2317 7.052248 TCATGATATGTTGTCTGCTGAAGAAT 58.948 34.615 0.00 0.00 36.40 2.40
2325 2421 5.796424 ACATTATGATGAAGGAAATGGGC 57.204 39.130 4.20 0.00 36.73 5.36
2687 2783 2.938956 AGTGAGGTCCAGGTTTTCAG 57.061 50.000 0.00 0.00 0.00 3.02
3021 3117 4.997395 CGGTTTCATTGTATAGAGGATGGG 59.003 45.833 0.00 0.00 0.00 4.00
3257 3353 3.314913 TGTGAATGTTACCACTGCAACAG 59.685 43.478 0.00 0.00 38.01 3.16
3327 3423 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
3514 3621 5.521906 TGTGTCTGGCTAGATGTCTATTC 57.478 43.478 2.00 0.00 34.94 1.75
3553 3660 5.507637 AGCTGTTCATTTTGATCTGGAGAT 58.492 37.500 0.00 0.00 37.51 2.75
3560 3667 7.630242 TCATTTTGATCTGGAGATGTTAACC 57.370 36.000 2.48 0.00 34.37 2.85
3637 3746 8.772705 GCTCTTCATTTGGATCAGTAATCTAAG 58.227 37.037 0.00 0.00 36.37 2.18
3692 3801 2.420547 GCATGATGCTCCAGGTGAGTTA 60.421 50.000 10.72 0.00 43.48 2.24
3698 3807 4.901197 TGCTCCAGGTGAGTTATGTTTA 57.099 40.909 0.00 0.00 43.48 2.01
3716 3825 5.433526 TGTTTACTACTGGCAGAAGTTGTT 58.566 37.500 23.66 0.00 37.35 2.83
3717 3826 6.584488 TGTTTACTACTGGCAGAAGTTGTTA 58.416 36.000 23.66 0.00 37.35 2.41
3718 3827 7.221450 TGTTTACTACTGGCAGAAGTTGTTAT 58.779 34.615 23.66 0.00 37.35 1.89
3719 3828 7.717875 TGTTTACTACTGGCAGAAGTTGTTATT 59.282 33.333 23.66 0.00 37.35 1.40
3720 3829 7.667043 TTACTACTGGCAGAAGTTGTTATTG 57.333 36.000 23.66 0.00 37.35 1.90
3721 3830 3.923017 ACTGGCAGAAGTTGTTATTGC 57.077 42.857 23.66 0.00 0.00 3.56
3722 3831 3.490348 ACTGGCAGAAGTTGTTATTGCT 58.510 40.909 23.66 0.00 35.23 3.91
3723 3832 3.891366 ACTGGCAGAAGTTGTTATTGCTT 59.109 39.130 23.66 0.00 35.23 3.91
3724 3833 4.022849 ACTGGCAGAAGTTGTTATTGCTTC 60.023 41.667 23.66 0.00 38.97 3.86
3725 3834 3.888323 TGGCAGAAGTTGTTATTGCTTCA 59.112 39.130 0.00 0.00 40.57 3.02
3781 3893 0.796312 CATACACAGTGCACGGGTTC 59.204 55.000 21.15 0.00 0.00 3.62
3782 3894 0.321298 ATACACAGTGCACGGGTTCC 60.321 55.000 21.15 0.00 0.00 3.62
3786 3898 3.872603 AGTGCACGGGTTCCTGCA 61.873 61.111 12.01 2.35 41.13 4.41
3852 3984 2.437413 GGTTTTCCTCTTTCTCCGCAT 58.563 47.619 0.00 0.00 36.94 4.73
3898 4030 1.803555 GTCTTGAGCAGAGTTCTTGGC 59.196 52.381 0.00 0.00 29.34 4.52
3940 4072 0.034767 TCTTGCAGCAGATCCCCTTG 60.035 55.000 0.00 0.00 0.00 3.61
3941 4073 1.664321 CTTGCAGCAGATCCCCTTGC 61.664 60.000 0.00 0.00 35.42 4.01
3942 4074 2.146146 TTGCAGCAGATCCCCTTGCT 62.146 55.000 1.52 1.52 38.25 3.91
3943 4075 1.379576 GCAGCAGATCCCCTTGCTT 60.380 57.895 4.53 0.00 35.17 3.91
3965 4097 2.664851 CCGGTGTCGCTCAAGCAA 60.665 61.111 2.50 0.00 42.21 3.91
3967 4099 1.646540 CGGTGTCGCTCAAGCAAAA 59.353 52.632 2.50 0.00 42.21 2.44
3968 4100 0.657368 CGGTGTCGCTCAAGCAAAAC 60.657 55.000 2.50 0.00 42.21 2.43
3969 4101 0.380378 GGTGTCGCTCAAGCAAAACA 59.620 50.000 2.50 0.79 42.21 2.83
3970 4102 1.597937 GGTGTCGCTCAAGCAAAACAG 60.598 52.381 2.50 0.00 42.21 3.16
3971 4103 1.330521 GTGTCGCTCAAGCAAAACAGA 59.669 47.619 2.50 0.00 42.21 3.41
3972 4104 1.330521 TGTCGCTCAAGCAAAACAGAC 59.669 47.619 2.50 1.24 42.21 3.51
3973 4105 1.330521 GTCGCTCAAGCAAAACAGACA 59.669 47.619 2.50 0.00 42.21 3.41
3974 4106 2.013400 TCGCTCAAGCAAAACAGACAA 58.987 42.857 2.50 0.00 42.21 3.18
3975 4107 2.111756 CGCTCAAGCAAAACAGACAAC 58.888 47.619 2.50 0.00 42.21 3.32
3976 4108 2.477694 CGCTCAAGCAAAACAGACAACA 60.478 45.455 2.50 0.00 42.21 3.33
3977 4109 2.854185 GCTCAAGCAAAACAGACAACAC 59.146 45.455 0.00 0.00 41.59 3.32
3978 4110 3.100817 CTCAAGCAAAACAGACAACACG 58.899 45.455 0.00 0.00 0.00 4.49
3979 4111 2.744741 TCAAGCAAAACAGACAACACGA 59.255 40.909 0.00 0.00 0.00 4.35
3980 4112 3.376859 TCAAGCAAAACAGACAACACGAT 59.623 39.130 0.00 0.00 0.00 3.73
3981 4113 3.338818 AGCAAAACAGACAACACGATG 57.661 42.857 0.00 0.00 0.00 3.84
3982 4114 2.682856 AGCAAAACAGACAACACGATGT 59.317 40.909 0.00 0.00 35.90 3.06
3983 4115 3.128589 AGCAAAACAGACAACACGATGTT 59.871 39.130 0.00 0.00 42.08 2.71
3984 4116 3.482110 GCAAAACAGACAACACGATGTTC 59.518 43.478 0.00 0.00 38.77 3.18
3985 4117 4.657055 CAAAACAGACAACACGATGTTCA 58.343 39.130 0.00 0.00 38.77 3.18
3986 4118 3.944422 AACAGACAACACGATGTTCAC 57.056 42.857 0.00 0.00 38.77 3.18
3987 4119 1.858458 ACAGACAACACGATGTTCACG 59.142 47.619 0.00 0.00 38.77 4.35
3988 4120 1.858458 CAGACAACACGATGTTCACGT 59.142 47.619 0.00 0.00 38.77 4.49
3989 4121 2.284150 CAGACAACACGATGTTCACGTT 59.716 45.455 0.00 0.00 38.77 3.99
3990 4122 2.933906 AGACAACACGATGTTCACGTTT 59.066 40.909 0.00 0.00 38.77 3.60
3991 4123 3.026349 GACAACACGATGTTCACGTTTG 58.974 45.455 0.00 0.00 38.77 2.93
3992 4124 2.417239 ACAACACGATGTTCACGTTTGT 59.583 40.909 0.00 0.00 38.77 2.83
3993 4125 3.026349 CAACACGATGTTCACGTTTGTC 58.974 45.455 0.00 0.00 38.77 3.18
3994 4126 2.546778 ACACGATGTTCACGTTTGTCT 58.453 42.857 0.00 0.00 42.07 3.41
3995 4127 3.708890 ACACGATGTTCACGTTTGTCTA 58.291 40.909 0.00 0.00 42.07 2.59
3996 4128 4.114073 ACACGATGTTCACGTTTGTCTAA 58.886 39.130 0.00 0.00 42.07 2.10
3997 4129 4.208460 ACACGATGTTCACGTTTGTCTAAG 59.792 41.667 0.00 0.00 42.07 2.18
3998 4130 4.208460 CACGATGTTCACGTTTGTCTAAGT 59.792 41.667 0.00 0.00 42.07 2.24
3999 4131 4.208460 ACGATGTTCACGTTTGTCTAAGTG 59.792 41.667 0.00 0.00 41.18 3.16
4000 4132 4.443063 CGATGTTCACGTTTGTCTAAGTGA 59.557 41.667 0.00 0.00 41.24 3.41
4005 4137 5.900339 TCACGTTTGTCTAAGTGAACATC 57.100 39.130 0.00 0.00 40.19 3.06
4006 4138 4.748102 TCACGTTTGTCTAAGTGAACATCC 59.252 41.667 0.00 0.00 40.19 3.51
4007 4139 4.062991 ACGTTTGTCTAAGTGAACATCCC 58.937 43.478 0.00 0.00 0.00 3.85
4008 4140 4.062293 CGTTTGTCTAAGTGAACATCCCA 58.938 43.478 0.00 0.00 0.00 4.37
4009 4141 4.152402 CGTTTGTCTAAGTGAACATCCCAG 59.848 45.833 0.00 0.00 0.00 4.45
4010 4142 3.981071 TGTCTAAGTGAACATCCCAGG 57.019 47.619 0.00 0.00 0.00 4.45
4011 4143 3.248024 TGTCTAAGTGAACATCCCAGGT 58.752 45.455 0.00 0.00 0.00 4.00
4012 4144 3.260884 TGTCTAAGTGAACATCCCAGGTC 59.739 47.826 0.00 0.00 0.00 3.85
4013 4145 2.496070 TCTAAGTGAACATCCCAGGTCG 59.504 50.000 0.00 0.00 0.00 4.79
4014 4146 1.348064 AAGTGAACATCCCAGGTCGA 58.652 50.000 0.00 0.00 0.00 4.20
4015 4147 1.573108 AGTGAACATCCCAGGTCGAT 58.427 50.000 0.00 0.00 0.00 3.59
4016 4148 1.482593 AGTGAACATCCCAGGTCGATC 59.517 52.381 0.00 0.00 0.00 3.69
4017 4149 1.207089 GTGAACATCCCAGGTCGATCA 59.793 52.381 0.00 0.00 0.00 2.92
4018 4150 2.118679 TGAACATCCCAGGTCGATCAT 58.881 47.619 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.234543 GCGAAATCTATCCGAAAAGCTAAGT 59.765 40.000 0.00 0.00 0.00 2.24
43 44 2.554462 TCTCCTCAGCGAAATCTATCCG 59.446 50.000 0.00 0.00 0.00 4.18
188 189 3.139077 CGTTCTTGTATTATGGGGAGGC 58.861 50.000 0.00 0.00 0.00 4.70
474 510 9.121658 GTAACTATCTTTAGAAATTCCCCCAAG 57.878 37.037 0.00 0.00 0.00 3.61
524 562 9.927668 CCAAATAATTGTAGAATGGAGTTTTGT 57.072 29.630 0.00 0.00 34.60 2.83
721 791 4.383649 CGAAAGTTTTGCACAATCTGATGG 59.616 41.667 0.00 0.00 0.00 3.51
722 792 5.214417 TCGAAAGTTTTGCACAATCTGATG 58.786 37.500 0.00 0.00 0.00 3.07
744 814 1.947456 GGCACGATTTGACCCCTATTC 59.053 52.381 0.00 0.00 0.00 1.75
752 822 2.286772 ACGAAGTTTGGCACGATTTGAC 60.287 45.455 1.25 0.00 37.78 3.18
936 1031 2.817844 GTCGACCTAATGCCCAGTTTTT 59.182 45.455 3.51 0.00 0.00 1.94
966 1061 0.181587 TTTTGGACAGCTCGGGTCAA 59.818 50.000 5.18 0.00 37.00 3.18
967 1062 0.534203 GTTTTGGACAGCTCGGGTCA 60.534 55.000 5.18 0.00 37.00 4.02
1473 1569 1.811266 CTTGACCGCATCCTCCACG 60.811 63.158 0.00 0.00 0.00 4.94
1608 1704 0.819582 CATGGTCCCATTGCTCAACC 59.180 55.000 0.00 0.00 33.90 3.77
1684 1780 1.604308 CCTGGGCATGCACTTGACA 60.604 57.895 22.81 7.76 0.00 3.58
1815 1911 4.978580 GCTGTCCAAGAAACAACATTCTTC 59.021 41.667 0.00 0.00 45.45 2.87
1917 2013 1.981256 AAGTGAACTCATTTGGCCGT 58.019 45.000 0.00 0.00 0.00 5.68
2019 2115 1.145738 ACAGACAGAGCACCCCAATTT 59.854 47.619 0.00 0.00 0.00 1.82
2020 2116 0.773644 ACAGACAGAGCACCCCAATT 59.226 50.000 0.00 0.00 0.00 2.32
2094 2190 4.478206 TGGCATAGAAAGGAAGACTCTG 57.522 45.455 0.00 0.00 0.00 3.35
2221 2317 2.509548 CAAAGGTCACATAGGATGGGGA 59.490 50.000 0.00 0.00 33.47 4.81
2325 2421 8.237267 GTGTAATGTTCTCTTCCAGGTTTTATG 58.763 37.037 0.00 0.00 0.00 1.90
2687 2783 3.190874 GGGTGATTCTTGTCGTCTGATC 58.809 50.000 0.00 0.00 0.00 2.92
3021 3117 5.410746 CCAATAGTCATCACATGAGCATACC 59.589 44.000 0.00 0.00 40.53 2.73
3059 3155 2.827800 CTCTGGAGCTTCTGACAACA 57.172 50.000 0.00 0.00 0.00 3.33
3257 3353 7.093354 TGATCAAAGATAGTGAACAGAGACAC 58.907 38.462 0.00 0.00 37.30 3.67
3447 3554 5.305902 TCCAGTTAATGTTCAGTGTGTAGGA 59.694 40.000 0.00 0.00 0.00 2.94
3637 3746 2.404215 TGAGTTGCTGTCGCTAACTTC 58.596 47.619 0.00 0.00 37.51 3.01
3692 3801 5.621193 ACAACTTCTGCCAGTAGTAAACAT 58.379 37.500 4.30 0.00 0.00 2.71
3698 3807 4.455877 GCAATAACAACTTCTGCCAGTAGT 59.544 41.667 0.00 0.00 0.00 2.73
3782 3894 4.508492 TTGAAAAACAACATGCAGATGCAG 59.492 37.500 13.62 7.96 43.18 4.41
3815 3927 1.662686 ACCTCCAGAGAGAAAAGGGG 58.337 55.000 0.00 0.00 43.39 4.79
3920 4052 0.034670 AAGGGGATCTGCTGCAAGAC 60.035 55.000 3.02 0.00 34.07 3.01
3964 4096 4.658071 GTGAACATCGTGTTGTCTGTTTT 58.342 39.130 7.89 0.00 41.28 2.43
3965 4097 3.242284 CGTGAACATCGTGTTGTCTGTTT 60.242 43.478 7.89 0.00 41.28 2.83
3967 4099 1.858458 CGTGAACATCGTGTTGTCTGT 59.142 47.619 7.89 0.00 41.28 3.41
3968 4100 1.858458 ACGTGAACATCGTGTTGTCTG 59.142 47.619 7.89 0.17 41.28 3.51
3969 4101 2.218953 ACGTGAACATCGTGTTGTCT 57.781 45.000 7.89 0.00 41.28 3.41
3970 4102 3.026349 CAAACGTGAACATCGTGTTGTC 58.974 45.455 7.89 0.00 41.28 3.18
3971 4103 2.417239 ACAAACGTGAACATCGTGTTGT 59.583 40.909 7.89 0.00 41.28 3.32
3972 4104 3.026349 GACAAACGTGAACATCGTGTTG 58.974 45.455 7.89 0.00 41.28 3.33
3973 4105 2.933906 AGACAAACGTGAACATCGTGTT 59.066 40.909 0.00 3.52 44.37 3.32
3974 4106 2.546778 AGACAAACGTGAACATCGTGT 58.453 42.857 0.00 0.00 41.38 4.49
3975 4107 4.208460 ACTTAGACAAACGTGAACATCGTG 59.792 41.667 0.00 0.00 41.38 4.35
3976 4108 4.208460 CACTTAGACAAACGTGAACATCGT 59.792 41.667 0.00 0.00 43.45 3.73
3977 4109 4.443063 TCACTTAGACAAACGTGAACATCG 59.557 41.667 0.00 0.00 33.84 3.84
3978 4110 5.900339 TCACTTAGACAAACGTGAACATC 57.100 39.130 0.00 0.00 33.84 3.06
3982 4114 5.235616 GGATGTTCACTTAGACAAACGTGAA 59.764 40.000 0.00 0.00 42.23 3.18
3983 4115 4.748102 GGATGTTCACTTAGACAAACGTGA 59.252 41.667 0.00 0.00 34.85 4.35
3984 4116 4.084013 GGGATGTTCACTTAGACAAACGTG 60.084 45.833 0.00 0.00 0.00 4.49
3985 4117 4.062991 GGGATGTTCACTTAGACAAACGT 58.937 43.478 0.00 0.00 0.00 3.99
3986 4118 4.062293 TGGGATGTTCACTTAGACAAACG 58.938 43.478 0.00 0.00 0.00 3.60
3987 4119 4.455877 CCTGGGATGTTCACTTAGACAAAC 59.544 45.833 0.00 0.00 0.00 2.93
3988 4120 4.104102 ACCTGGGATGTTCACTTAGACAAA 59.896 41.667 0.00 0.00 0.00 2.83
3989 4121 3.650942 ACCTGGGATGTTCACTTAGACAA 59.349 43.478 0.00 0.00 0.00 3.18
3990 4122 3.248024 ACCTGGGATGTTCACTTAGACA 58.752 45.455 0.00 0.00 0.00 3.41
3991 4123 3.676324 CGACCTGGGATGTTCACTTAGAC 60.676 52.174 0.00 0.00 0.00 2.59
3992 4124 2.496070 CGACCTGGGATGTTCACTTAGA 59.504 50.000 0.00 0.00 0.00 2.10
3993 4125 2.496070 TCGACCTGGGATGTTCACTTAG 59.504 50.000 0.00 0.00 0.00 2.18
3994 4126 2.531771 TCGACCTGGGATGTTCACTTA 58.468 47.619 0.00 0.00 0.00 2.24
3995 4127 1.348064 TCGACCTGGGATGTTCACTT 58.652 50.000 0.00 0.00 0.00 3.16
3996 4128 1.482593 GATCGACCTGGGATGTTCACT 59.517 52.381 0.00 0.00 0.00 3.41
3997 4129 1.207089 TGATCGACCTGGGATGTTCAC 59.793 52.381 0.00 0.00 0.00 3.18
3998 4130 1.567357 TGATCGACCTGGGATGTTCA 58.433 50.000 0.00 0.00 0.00 3.18
3999 4131 2.760374 GATGATCGACCTGGGATGTTC 58.240 52.381 0.00 0.00 0.00 3.18
4000 4132 1.069204 CGATGATCGACCTGGGATGTT 59.931 52.381 9.62 0.00 43.74 2.71
4001 4133 0.676184 CGATGATCGACCTGGGATGT 59.324 55.000 9.62 0.00 43.74 3.06
4002 4134 0.676184 ACGATGATCGACCTGGGATG 59.324 55.000 22.88 0.00 43.74 3.51
4003 4135 1.341531 GAACGATGATCGACCTGGGAT 59.658 52.381 22.88 0.00 43.74 3.85
4004 4136 0.744874 GAACGATGATCGACCTGGGA 59.255 55.000 22.88 0.00 43.74 4.37
4005 4137 0.249489 GGAACGATGATCGACCTGGG 60.249 60.000 22.88 0.00 43.74 4.45
4006 4138 0.249489 GGGAACGATGATCGACCTGG 60.249 60.000 22.88 0.00 43.74 4.45
4007 4139 3.274393 GGGAACGATGATCGACCTG 57.726 57.895 22.88 0.00 43.74 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.