Multiple sequence alignment - TraesCS1B01G441300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G441300 chr1B 100.000 2849 0 0 1 2849 662195137 662192289 0.000000e+00 5262.0
1 TraesCS1B01G441300 chr1D 88.760 2322 137 58 547 2813 475982013 475979761 0.000000e+00 2728.0
2 TraesCS1B01G441300 chr1D 91.837 98 6 2 425 521 12179553 12179649 4.950000e-28 135.0
3 TraesCS1B01G441300 chr1D 97.143 35 1 0 2815 2849 475978236 475978202 3.070000e-05 60.2
4 TraesCS1B01G441300 chr1A 89.786 1821 90 42 537 2314 571896149 571894382 0.000000e+00 2244.0
5 TraesCS1B01G441300 chr1A 80.653 429 46 20 2388 2797 571894309 571893899 5.970000e-77 298.0
6 TraesCS1B01G441300 chr6B 83.051 177 28 2 1301 1476 474749463 474749288 2.940000e-35 159.0
7 TraesCS1B01G441300 chr6D 84.431 167 19 6 230 396 904529 904370 1.060000e-34 158.0
8 TraesCS1B01G441300 chr5D 92.929 99 7 0 430 528 545227876 545227778 8.230000e-31 145.0
9 TraesCS1B01G441300 chr5D 92.632 95 7 0 430 524 431293827 431293733 1.380000e-28 137.0
10 TraesCS1B01G441300 chr7D 91.262 103 7 2 431 533 22964254 22964354 3.830000e-29 139.0
11 TraesCS1B01G441300 chr7D 93.478 92 6 0 433 524 562392888 562392797 1.380000e-28 137.0
12 TraesCS1B01G441300 chr7D 80.000 175 35 0 1299 1473 582458647 582458821 2.300000e-26 130.0
13 TraesCS1B01G441300 chr7D 75.275 182 35 8 230 408 563710996 563710822 8.460000e-11 78.7
14 TraesCS1B01G441300 chr2D 91.089 101 9 0 421 521 270850354 270850254 1.380000e-28 137.0
15 TraesCS1B01G441300 chr2D 80.220 182 32 4 1299 1478 607283906 607284085 1.780000e-27 134.0
16 TraesCS1B01G441300 chr2D 79.255 188 33 6 1297 1481 603141916 603141732 2.980000e-25 126.0
17 TraesCS1B01G441300 chr4D 93.407 91 6 0 434 524 434161614 434161704 4.950000e-28 135.0
18 TraesCS1B01G441300 chr2B 80.000 185 33 4 1299 1481 739369414 739369232 1.780000e-27 134.0
19 TraesCS1B01G441300 chr2B 85.366 123 13 4 426 548 362021232 362021115 3.850000e-24 122.0
20 TraesCS1B01G441300 chr2B 92.157 51 3 1 361 410 160908055 160908005 1.420000e-08 71.3
21 TraesCS1B01G441300 chr2A 80.220 182 32 4 1299 1478 738921987 738922166 1.780000e-27 134.0
22 TraesCS1B01G441300 chr7B 90.385 104 4 5 434 532 632792153 632792255 6.400000e-27 132.0
23 TraesCS1B01G441300 chr7A 78.109 201 44 0 1276 1476 674286738 674286938 8.280000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G441300 chr1B 662192289 662195137 2848 True 5262.0 5262 100.0000 1 2849 1 chr1B.!!$R1 2848
1 TraesCS1B01G441300 chr1D 475978202 475982013 3811 True 1394.1 2728 92.9515 547 2849 2 chr1D.!!$R1 2302
2 TraesCS1B01G441300 chr1A 571893899 571896149 2250 True 1271.0 2244 85.2195 537 2797 2 chr1A.!!$R1 2260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.033011 GCAGAGGGGAGGTGAGTCTA 60.033 60.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 1982 0.103228 TGGGATGGGATGGGATGGAT 60.103 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.830486 AGATGCATCTGGATTCCCCT 58.170 50.000 28.21 0.00 35.42 4.79
21 22 1.704070 AGATGCATCTGGATTCCCCTC 59.296 52.381 28.21 0.00 35.42 4.30
22 23 0.776176 ATGCATCTGGATTCCCCTCC 59.224 55.000 0.00 0.00 35.38 4.30
23 24 1.355718 TGCATCTGGATTCCCCTCCC 61.356 60.000 0.00 0.00 34.12 4.30
24 25 2.074113 GCATCTGGATTCCCCTCCCC 62.074 65.000 0.00 0.00 34.12 4.81
25 26 1.462238 ATCTGGATTCCCCTCCCCG 60.462 63.158 0.00 0.00 34.12 5.73
26 27 2.271493 ATCTGGATTCCCCTCCCCGT 62.271 60.000 0.00 0.00 34.12 5.28
27 28 1.074775 CTGGATTCCCCTCCCCGTA 60.075 63.158 0.00 0.00 34.12 4.02
28 29 1.074775 TGGATTCCCCTCCCCGTAG 60.075 63.158 0.00 0.00 34.12 3.51
29 30 2.517798 GGATTCCCCTCCCCGTAGC 61.518 68.421 0.00 0.00 0.00 3.58
30 31 2.842936 ATTCCCCTCCCCGTAGCG 60.843 66.667 0.00 0.00 0.00 4.26
31 32 3.384555 ATTCCCCTCCCCGTAGCGA 62.385 63.158 0.00 0.00 0.00 4.93
32 33 4.828296 TCCCCTCCCCGTAGCGAC 62.828 72.222 0.00 0.00 0.00 5.19
35 36 2.838225 CCTCCCCGTAGCGACCAT 60.838 66.667 0.00 0.00 0.00 3.55
36 37 2.728817 CTCCCCGTAGCGACCATC 59.271 66.667 0.00 0.00 0.00 3.51
37 38 3.195591 CTCCCCGTAGCGACCATCG 62.196 68.421 0.00 0.00 43.89 3.84
48 49 0.301687 CGACCATCGCAGTAACATGC 59.698 55.000 0.00 0.00 42.95 4.06
49 50 1.368641 GACCATCGCAGTAACATGCA 58.631 50.000 0.00 0.00 46.87 3.96
50 51 1.328680 GACCATCGCAGTAACATGCAG 59.671 52.381 0.00 0.00 46.87 4.41
51 52 1.066215 ACCATCGCAGTAACATGCAGA 60.066 47.619 0.00 0.00 46.87 4.26
52 53 1.596260 CCATCGCAGTAACATGCAGAG 59.404 52.381 0.00 0.00 46.87 3.35
53 54 1.596260 CATCGCAGTAACATGCAGAGG 59.404 52.381 0.00 0.00 46.87 3.69
54 55 0.108186 TCGCAGTAACATGCAGAGGG 60.108 55.000 0.00 0.00 46.87 4.30
55 56 1.091771 CGCAGTAACATGCAGAGGGG 61.092 60.000 0.00 0.00 46.87 4.79
56 57 0.253044 GCAGTAACATGCAGAGGGGA 59.747 55.000 0.00 0.00 45.77 4.81
57 58 1.745141 GCAGTAACATGCAGAGGGGAG 60.745 57.143 0.00 0.00 45.77 4.30
58 59 1.134280 CAGTAACATGCAGAGGGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
59 60 0.912486 GTAACATGCAGAGGGGAGGT 59.088 55.000 0.00 0.00 31.28 3.85
60 61 0.911769 TAACATGCAGAGGGGAGGTG 59.088 55.000 0.00 0.00 30.15 4.00
61 62 0.842030 AACATGCAGAGGGGAGGTGA 60.842 55.000 0.00 0.00 30.15 4.02
62 63 1.270414 ACATGCAGAGGGGAGGTGAG 61.270 60.000 0.00 0.00 27.86 3.51
63 64 1.081833 ATGCAGAGGGGAGGTGAGT 59.918 57.895 0.00 0.00 0.00 3.41
64 65 0.980231 ATGCAGAGGGGAGGTGAGTC 60.980 60.000 0.00 0.00 0.00 3.36
65 66 1.305718 GCAGAGGGGAGGTGAGTCT 60.306 63.158 0.00 0.00 0.00 3.24
66 67 0.033011 GCAGAGGGGAGGTGAGTCTA 60.033 60.000 0.00 0.00 0.00 2.59
67 68 1.770294 CAGAGGGGAGGTGAGTCTAC 58.230 60.000 0.00 0.00 0.00 2.59
68 69 0.256464 AGAGGGGAGGTGAGTCTACG 59.744 60.000 0.00 0.00 0.00 3.51
69 70 0.752376 GAGGGGAGGTGAGTCTACGG 60.752 65.000 0.00 0.00 0.00 4.02
70 71 1.757340 GGGGAGGTGAGTCTACGGG 60.757 68.421 0.00 0.00 0.00 5.28
71 72 1.000107 GGGAGGTGAGTCTACGGGT 60.000 63.158 0.00 0.00 0.00 5.28
72 73 0.614134 GGGAGGTGAGTCTACGGGTT 60.614 60.000 0.00 0.00 0.00 4.11
73 74 0.531200 GGAGGTGAGTCTACGGGTTG 59.469 60.000 0.00 0.00 0.00 3.77
74 75 1.254954 GAGGTGAGTCTACGGGTTGT 58.745 55.000 0.00 0.00 0.00 3.32
75 76 1.201880 GAGGTGAGTCTACGGGTTGTC 59.798 57.143 0.00 0.00 0.00 3.18
76 77 0.245813 GGTGAGTCTACGGGTTGTCC 59.754 60.000 0.00 0.00 0.00 4.02
85 86 2.047179 GGGTTGTCCGACAGAGCC 60.047 66.667 12.89 12.89 33.83 4.70
86 87 2.047179 GGTTGTCCGACAGAGCCC 60.047 66.667 0.64 0.00 0.00 5.19
87 88 2.741092 GTTGTCCGACAGAGCCCA 59.259 61.111 0.64 0.00 0.00 5.36
88 89 1.374758 GTTGTCCGACAGAGCCCAG 60.375 63.158 0.64 0.00 0.00 4.45
89 90 1.533033 TTGTCCGACAGAGCCCAGA 60.533 57.895 0.64 0.00 0.00 3.86
90 91 1.118965 TTGTCCGACAGAGCCCAGAA 61.119 55.000 0.64 0.00 0.00 3.02
91 92 1.216710 GTCCGACAGAGCCCAGAAG 59.783 63.158 0.00 0.00 0.00 2.85
92 93 1.984570 TCCGACAGAGCCCAGAAGG 60.985 63.158 0.00 0.00 39.47 3.46
93 94 1.984570 CCGACAGAGCCCAGAAGGA 60.985 63.158 0.00 0.00 38.24 3.36
94 95 1.544825 CCGACAGAGCCCAGAAGGAA 61.545 60.000 0.00 0.00 38.24 3.36
95 96 0.539051 CGACAGAGCCCAGAAGGAAT 59.461 55.000 0.00 0.00 38.24 3.01
96 97 1.741732 CGACAGAGCCCAGAAGGAATG 60.742 57.143 0.00 0.00 38.24 2.67
97 98 1.556911 GACAGAGCCCAGAAGGAATGA 59.443 52.381 0.00 0.00 38.24 2.57
98 99 1.558756 ACAGAGCCCAGAAGGAATGAG 59.441 52.381 0.00 0.00 38.24 2.90
99 100 1.558756 CAGAGCCCAGAAGGAATGAGT 59.441 52.381 0.00 0.00 38.24 3.41
100 101 2.026449 CAGAGCCCAGAAGGAATGAGTT 60.026 50.000 0.00 0.00 38.24 3.01
101 102 2.026449 AGAGCCCAGAAGGAATGAGTTG 60.026 50.000 0.00 0.00 38.24 3.16
102 103 1.707427 AGCCCAGAAGGAATGAGTTGT 59.293 47.619 0.00 0.00 38.24 3.32
103 104 2.108952 AGCCCAGAAGGAATGAGTTGTT 59.891 45.455 0.00 0.00 38.24 2.83
104 105 2.489722 GCCCAGAAGGAATGAGTTGTTC 59.510 50.000 0.00 0.00 38.24 3.18
105 106 2.744202 CCCAGAAGGAATGAGTTGTTCG 59.256 50.000 0.00 0.00 38.24 3.95
106 107 2.160417 CCAGAAGGAATGAGTTGTTCGC 59.840 50.000 0.00 0.00 36.89 4.70
107 108 2.160417 CAGAAGGAATGAGTTGTTCGCC 59.840 50.000 0.00 0.00 0.00 5.54
108 109 1.468914 GAAGGAATGAGTTGTTCGCCC 59.531 52.381 0.00 0.00 0.00 6.13
109 110 0.693049 AGGAATGAGTTGTTCGCCCT 59.307 50.000 0.00 0.00 0.00 5.19
110 111 1.906574 AGGAATGAGTTGTTCGCCCTA 59.093 47.619 0.00 0.00 0.00 3.53
111 112 2.304761 AGGAATGAGTTGTTCGCCCTAA 59.695 45.455 0.00 0.00 0.00 2.69
112 113 2.418976 GGAATGAGTTGTTCGCCCTAAC 59.581 50.000 0.00 0.00 0.00 2.34
113 114 1.722011 ATGAGTTGTTCGCCCTAACG 58.278 50.000 0.00 0.00 31.76 3.18
114 115 0.390124 TGAGTTGTTCGCCCTAACGT 59.610 50.000 0.00 0.00 31.76 3.99
115 116 1.066136 GAGTTGTTCGCCCTAACGTC 58.934 55.000 0.00 0.00 31.76 4.34
116 117 0.320160 AGTTGTTCGCCCTAACGTCC 60.320 55.000 0.00 0.00 31.76 4.79
117 118 1.004679 TTGTTCGCCCTAACGTCCC 60.005 57.895 0.00 0.00 31.76 4.46
118 119 1.474332 TTGTTCGCCCTAACGTCCCT 61.474 55.000 0.00 0.00 31.76 4.20
119 120 1.294459 GTTCGCCCTAACGTCCCTT 59.706 57.895 0.00 0.00 0.00 3.95
120 121 0.321034 GTTCGCCCTAACGTCCCTTT 60.321 55.000 0.00 0.00 0.00 3.11
121 122 0.037046 TTCGCCCTAACGTCCCTTTC 60.037 55.000 0.00 0.00 0.00 2.62
122 123 1.186917 TCGCCCTAACGTCCCTTTCA 61.187 55.000 0.00 0.00 0.00 2.69
123 124 1.017701 CGCCCTAACGTCCCTTTCAC 61.018 60.000 0.00 0.00 0.00 3.18
124 125 1.017701 GCCCTAACGTCCCTTTCACG 61.018 60.000 0.00 0.00 43.13 4.35
125 126 0.604578 CCCTAACGTCCCTTTCACGA 59.395 55.000 0.00 0.00 39.75 4.35
126 127 1.403780 CCCTAACGTCCCTTTCACGAG 60.404 57.143 0.00 0.00 39.75 4.18
127 128 1.542915 CCTAACGTCCCTTTCACGAGA 59.457 52.381 0.00 0.00 39.75 4.04
128 129 2.415625 CCTAACGTCCCTTTCACGAGAG 60.416 54.545 0.00 0.00 39.75 3.20
129 130 0.317479 AACGTCCCTTTCACGAGAGG 59.683 55.000 0.00 0.00 39.75 3.69
148 149 1.763968 GGGGGAGCAAAAGGATGTAC 58.236 55.000 0.00 0.00 0.00 2.90
149 150 1.285078 GGGGGAGCAAAAGGATGTACT 59.715 52.381 0.00 0.00 0.00 2.73
150 151 2.508300 GGGGGAGCAAAAGGATGTACTA 59.492 50.000 0.00 0.00 0.00 1.82
151 152 3.138468 GGGGGAGCAAAAGGATGTACTAT 59.862 47.826 0.00 0.00 0.00 2.12
152 153 4.137543 GGGGAGCAAAAGGATGTACTATG 58.862 47.826 0.00 0.00 0.00 2.23
153 154 4.137543 GGGAGCAAAAGGATGTACTATGG 58.862 47.826 0.00 0.00 0.00 2.74
154 155 4.137543 GGAGCAAAAGGATGTACTATGGG 58.862 47.826 0.00 0.00 0.00 4.00
155 156 4.385310 GGAGCAAAAGGATGTACTATGGGT 60.385 45.833 0.00 0.00 0.00 4.51
156 157 4.781934 AGCAAAAGGATGTACTATGGGTC 58.218 43.478 0.00 0.00 0.00 4.46
157 158 3.560068 GCAAAAGGATGTACTATGGGTCG 59.440 47.826 0.00 0.00 0.00 4.79
158 159 4.682320 GCAAAAGGATGTACTATGGGTCGA 60.682 45.833 0.00 0.00 0.00 4.20
159 160 5.424757 CAAAAGGATGTACTATGGGTCGAA 58.575 41.667 0.00 0.00 0.00 3.71
160 161 5.687166 AAAGGATGTACTATGGGTCGAAA 57.313 39.130 0.00 0.00 0.00 3.46
161 162 5.888982 AAGGATGTACTATGGGTCGAAAT 57.111 39.130 0.00 0.00 0.00 2.17
162 163 5.215252 AGGATGTACTATGGGTCGAAATG 57.785 43.478 0.00 0.00 0.00 2.32
163 164 4.899457 AGGATGTACTATGGGTCGAAATGA 59.101 41.667 0.00 0.00 0.00 2.57
164 165 5.365605 AGGATGTACTATGGGTCGAAATGAA 59.634 40.000 0.00 0.00 0.00 2.57
165 166 5.696724 GGATGTACTATGGGTCGAAATGAAG 59.303 44.000 0.00 0.00 0.00 3.02
166 167 5.018539 TGTACTATGGGTCGAAATGAAGG 57.981 43.478 0.00 0.00 0.00 3.46
167 168 4.712829 TGTACTATGGGTCGAAATGAAGGA 59.287 41.667 0.00 0.00 0.00 3.36
168 169 5.365605 TGTACTATGGGTCGAAATGAAGGAT 59.634 40.000 0.00 0.00 0.00 3.24
169 170 6.551975 TGTACTATGGGTCGAAATGAAGGATA 59.448 38.462 0.00 0.00 0.00 2.59
170 171 5.855045 ACTATGGGTCGAAATGAAGGATAC 58.145 41.667 0.00 0.00 0.00 2.24
171 172 3.553828 TGGGTCGAAATGAAGGATACC 57.446 47.619 0.00 0.00 37.17 2.73
172 173 2.841266 TGGGTCGAAATGAAGGATACCA 59.159 45.455 0.00 0.00 37.17 3.25
173 174 3.264706 TGGGTCGAAATGAAGGATACCAA 59.735 43.478 0.00 0.00 37.17 3.67
174 175 3.626217 GGGTCGAAATGAAGGATACCAAC 59.374 47.826 0.00 0.00 37.17 3.77
175 176 3.626217 GGTCGAAATGAAGGATACCAACC 59.374 47.826 0.00 0.00 37.17 3.77
176 177 3.308866 GTCGAAATGAAGGATACCAACCG 59.691 47.826 0.00 0.00 37.17 4.44
177 178 3.055675 TCGAAATGAAGGATACCAACCGT 60.056 43.478 0.00 0.00 37.17 4.83
178 179 3.687698 CGAAATGAAGGATACCAACCGTT 59.312 43.478 0.00 0.00 37.17 4.44
179 180 4.871557 CGAAATGAAGGATACCAACCGTTA 59.128 41.667 0.00 0.00 37.17 3.18
180 181 5.352016 CGAAATGAAGGATACCAACCGTTAA 59.648 40.000 0.00 0.00 37.17 2.01
181 182 6.128227 CGAAATGAAGGATACCAACCGTTAAA 60.128 38.462 0.00 0.00 37.17 1.52
182 183 7.527568 AAATGAAGGATACCAACCGTTAAAA 57.472 32.000 0.00 0.00 37.17 1.52
183 184 7.527568 AATGAAGGATACCAACCGTTAAAAA 57.472 32.000 0.00 0.00 37.17 1.94
203 204 3.441496 AAAAATGGATGCCATGTAGCG 57.559 42.857 0.00 0.00 44.40 4.26
204 205 1.321474 AAATGGATGCCATGTAGCGG 58.679 50.000 0.00 0.00 44.40 5.52
205 206 0.473755 AATGGATGCCATGTAGCGGA 59.526 50.000 0.00 0.00 44.40 5.54
206 207 0.473755 ATGGATGCCATGTAGCGGAA 59.526 50.000 0.00 0.00 43.39 4.30
207 208 0.254462 TGGATGCCATGTAGCGGAAA 59.746 50.000 0.00 0.00 34.65 3.13
208 209 1.340502 TGGATGCCATGTAGCGGAAAA 60.341 47.619 0.00 0.00 34.65 2.29
209 210 1.956477 GGATGCCATGTAGCGGAAAAT 59.044 47.619 0.00 0.00 34.65 1.82
210 211 2.287788 GGATGCCATGTAGCGGAAAATG 60.288 50.000 0.00 0.00 34.65 2.32
211 212 0.455410 TGCCATGTAGCGGAAAATGC 59.545 50.000 0.00 0.00 34.65 3.56
212 213 0.740737 GCCATGTAGCGGAAAATGCT 59.259 50.000 0.00 0.00 46.29 3.79
213 214 1.134946 GCCATGTAGCGGAAAATGCTT 59.865 47.619 0.00 0.00 43.71 3.91
214 215 2.357637 GCCATGTAGCGGAAAATGCTTA 59.642 45.455 0.00 0.00 43.71 3.09
215 216 3.792124 GCCATGTAGCGGAAAATGCTTAC 60.792 47.826 0.00 0.00 43.71 2.34
216 217 3.546020 CCATGTAGCGGAAAATGCTTACG 60.546 47.826 0.00 0.00 43.71 3.18
217 218 2.004017 TGTAGCGGAAAATGCTTACGG 58.996 47.619 0.00 0.00 43.71 4.02
218 219 2.273557 GTAGCGGAAAATGCTTACGGA 58.726 47.619 0.00 0.00 43.71 4.69
219 220 1.369625 AGCGGAAAATGCTTACGGAG 58.630 50.000 0.00 0.00 40.48 4.63
220 221 0.377203 GCGGAAAATGCTTACGGAGG 59.623 55.000 0.00 0.00 0.00 4.30
221 222 0.377203 CGGAAAATGCTTACGGAGGC 59.623 55.000 0.00 0.00 0.00 4.70
222 223 1.751437 GGAAAATGCTTACGGAGGCT 58.249 50.000 2.42 0.00 0.00 4.58
223 224 1.401905 GGAAAATGCTTACGGAGGCTG 59.598 52.381 2.42 0.00 0.00 4.85
224 225 2.356135 GAAAATGCTTACGGAGGCTGA 58.644 47.619 2.42 0.00 0.00 4.26
225 226 2.029838 AAATGCTTACGGAGGCTGAG 57.970 50.000 2.42 0.00 0.00 3.35
226 227 0.462759 AATGCTTACGGAGGCTGAGC 60.463 55.000 2.42 0.00 0.00 4.26
227 228 1.333636 ATGCTTACGGAGGCTGAGCT 61.334 55.000 3.72 0.00 34.56 4.09
228 229 1.227118 GCTTACGGAGGCTGAGCTC 60.227 63.158 6.82 6.82 0.00 4.09
229 230 1.671901 GCTTACGGAGGCTGAGCTCT 61.672 60.000 16.19 0.00 0.00 4.09
230 231 0.820871 CTTACGGAGGCTGAGCTCTT 59.179 55.000 16.19 0.00 0.00 2.85
231 232 0.532573 TTACGGAGGCTGAGCTCTTG 59.467 55.000 16.19 9.02 0.00 3.02
232 233 1.323271 TACGGAGGCTGAGCTCTTGG 61.323 60.000 16.19 6.43 0.00 3.61
233 234 2.588989 GGAGGCTGAGCTCTTGGG 59.411 66.667 16.19 3.91 0.00 4.12
234 235 2.124778 GAGGCTGAGCTCTTGGGC 60.125 66.667 16.19 16.17 0.00 5.36
235 236 3.695747 GAGGCTGAGCTCTTGGGCC 62.696 68.421 23.05 23.05 42.74 5.80
238 239 3.393970 CTGAGCTCTTGGGCCGGA 61.394 66.667 16.19 0.00 0.00 5.14
239 240 2.927856 TGAGCTCTTGGGCCGGAA 60.928 61.111 16.19 0.00 0.00 4.30
240 241 2.262774 CTGAGCTCTTGGGCCGGAAT 62.263 60.000 16.19 0.00 0.00 3.01
241 242 1.077429 GAGCTCTTGGGCCGGAATT 60.077 57.895 5.05 0.00 0.00 2.17
242 243 0.681243 GAGCTCTTGGGCCGGAATTT 60.681 55.000 5.05 0.00 0.00 1.82
243 244 0.251787 AGCTCTTGGGCCGGAATTTT 60.252 50.000 5.05 0.00 0.00 1.82
244 245 0.173481 GCTCTTGGGCCGGAATTTTC 59.827 55.000 5.05 0.00 0.00 2.29
245 246 1.839424 CTCTTGGGCCGGAATTTTCT 58.161 50.000 5.05 0.00 0.00 2.52
246 247 2.171003 CTCTTGGGCCGGAATTTTCTT 58.829 47.619 5.05 0.00 0.00 2.52
247 248 2.562738 CTCTTGGGCCGGAATTTTCTTT 59.437 45.455 5.05 0.00 0.00 2.52
248 249 2.560981 TCTTGGGCCGGAATTTTCTTTC 59.439 45.455 5.05 0.00 0.00 2.62
249 250 2.002505 TGGGCCGGAATTTTCTTTCA 57.997 45.000 5.05 0.00 0.00 2.69
250 251 2.534990 TGGGCCGGAATTTTCTTTCAT 58.465 42.857 5.05 0.00 0.00 2.57
251 252 2.903135 TGGGCCGGAATTTTCTTTCATT 59.097 40.909 5.05 0.00 0.00 2.57
252 253 3.326297 TGGGCCGGAATTTTCTTTCATTT 59.674 39.130 5.05 0.00 0.00 2.32
253 254 3.684305 GGGCCGGAATTTTCTTTCATTTG 59.316 43.478 5.05 0.00 0.00 2.32
254 255 4.314961 GGCCGGAATTTTCTTTCATTTGT 58.685 39.130 5.05 0.00 0.00 2.83
255 256 4.152223 GGCCGGAATTTTCTTTCATTTGTG 59.848 41.667 5.05 0.00 0.00 3.33
256 257 4.377328 GCCGGAATTTTCTTTCATTTGTGC 60.377 41.667 5.05 0.00 0.00 4.57
257 258 4.749099 CCGGAATTTTCTTTCATTTGTGCA 59.251 37.500 0.00 0.00 0.00 4.57
258 259 5.107375 CCGGAATTTTCTTTCATTTGTGCAG 60.107 40.000 0.00 0.00 0.00 4.41
259 260 5.613142 CGGAATTTTCTTTCATTTGTGCAGC 60.613 40.000 0.00 0.00 0.00 5.25
260 261 5.334337 GGAATTTTCTTTCATTTGTGCAGCC 60.334 40.000 0.00 0.00 0.00 4.85
261 262 4.405116 TTTTCTTTCATTTGTGCAGCCT 57.595 36.364 0.00 0.00 0.00 4.58
262 263 5.528043 TTTTCTTTCATTTGTGCAGCCTA 57.472 34.783 0.00 0.00 0.00 3.93
263 264 4.503741 TTCTTTCATTTGTGCAGCCTAC 57.496 40.909 0.00 0.00 0.00 3.18
264 265 3.485394 TCTTTCATTTGTGCAGCCTACA 58.515 40.909 0.00 0.00 0.00 2.74
265 266 3.888323 TCTTTCATTTGTGCAGCCTACAA 59.112 39.130 0.00 0.00 36.34 2.41
270 271 3.641437 TTTGTGCAGCCTACAAATCAC 57.359 42.857 6.89 0.00 41.57 3.06
271 272 2.566833 TGTGCAGCCTACAAATCACT 57.433 45.000 0.00 0.00 0.00 3.41
272 273 3.694043 TGTGCAGCCTACAAATCACTA 57.306 42.857 0.00 0.00 0.00 2.74
273 274 4.014569 TGTGCAGCCTACAAATCACTAA 57.985 40.909 0.00 0.00 0.00 2.24
274 275 3.751175 TGTGCAGCCTACAAATCACTAAC 59.249 43.478 0.00 0.00 0.00 2.34
275 276 3.127030 GTGCAGCCTACAAATCACTAACC 59.873 47.826 0.00 0.00 0.00 2.85
276 277 3.244735 TGCAGCCTACAAATCACTAACCA 60.245 43.478 0.00 0.00 0.00 3.67
277 278 3.947834 GCAGCCTACAAATCACTAACCAT 59.052 43.478 0.00 0.00 0.00 3.55
278 279 4.399303 GCAGCCTACAAATCACTAACCATT 59.601 41.667 0.00 0.00 0.00 3.16
279 280 5.105756 GCAGCCTACAAATCACTAACCATTT 60.106 40.000 0.00 0.00 0.00 2.32
280 281 6.572314 GCAGCCTACAAATCACTAACCATTTT 60.572 38.462 0.00 0.00 0.00 1.82
281 282 7.378181 CAGCCTACAAATCACTAACCATTTTT 58.622 34.615 0.00 0.00 0.00 1.94
305 306 9.771915 TTTTCTTTACGAAATTTAACACGTTCT 57.228 25.926 7.79 0.00 41.04 3.01
306 307 9.771915 TTTCTTTACGAAATTTAACACGTTCTT 57.228 25.926 7.79 0.00 36.72 2.52
307 308 8.756376 TCTTTACGAAATTTAACACGTTCTTG 57.244 30.769 7.79 0.00 39.59 3.02
308 309 6.956393 TTACGAAATTTAACACGTTCTTGC 57.044 33.333 7.79 0.00 39.59 4.01
309 310 3.963724 ACGAAATTTAACACGTTCTTGCG 59.036 39.130 0.00 0.00 35.47 4.85
310 311 3.356658 CGAAATTTAACACGTTCTTGCGG 59.643 43.478 0.00 0.00 35.98 5.69
311 312 4.529446 GAAATTTAACACGTTCTTGCGGA 58.471 39.130 0.00 0.00 35.98 5.54
312 313 4.555348 AATTTAACACGTTCTTGCGGAA 57.445 36.364 0.00 0.00 35.98 4.30
313 314 4.759516 ATTTAACACGTTCTTGCGGAAT 57.240 36.364 0.00 0.00 36.24 3.01
314 315 3.529634 TTAACACGTTCTTGCGGAATG 57.470 42.857 9.09 9.09 44.22 2.67
315 316 0.040425 AACACGTTCTTGCGGAATGC 60.040 50.000 10.19 0.00 42.88 3.56
327 328 2.731217 GCGGAATGCATACATGTTTCC 58.269 47.619 13.96 13.96 45.45 3.13
328 329 2.098934 GCGGAATGCATACATGTTTCCA 59.901 45.455 20.80 4.89 45.45 3.53
329 330 3.243501 GCGGAATGCATACATGTTTCCAT 60.244 43.478 20.80 6.92 45.45 3.41
341 342 5.720371 CATGTTTCCATGTACCCTTTTCA 57.280 39.130 0.00 0.00 42.92 2.69
342 343 5.713025 CATGTTTCCATGTACCCTTTTCAG 58.287 41.667 0.00 0.00 42.92 3.02
343 344 5.055265 TGTTTCCATGTACCCTTTTCAGA 57.945 39.130 0.00 0.00 0.00 3.27
344 345 5.640147 TGTTTCCATGTACCCTTTTCAGAT 58.360 37.500 0.00 0.00 0.00 2.90
345 346 6.074648 TGTTTCCATGTACCCTTTTCAGATT 58.925 36.000 0.00 0.00 0.00 2.40
346 347 6.553100 TGTTTCCATGTACCCTTTTCAGATTT 59.447 34.615 0.00 0.00 0.00 2.17
347 348 7.070571 TGTTTCCATGTACCCTTTTCAGATTTT 59.929 33.333 0.00 0.00 0.00 1.82
348 349 7.610580 TTCCATGTACCCTTTTCAGATTTTT 57.389 32.000 0.00 0.00 0.00 1.94
394 395 5.957842 TGATGTTTTCAAAATACCGAGCT 57.042 34.783 0.00 0.00 0.00 4.09
395 396 5.938322 TGATGTTTTCAAAATACCGAGCTC 58.062 37.500 2.73 2.73 0.00 4.09
396 397 4.759516 TGTTTTCAAAATACCGAGCTCC 57.240 40.909 8.47 0.00 0.00 4.70
397 398 4.394729 TGTTTTCAAAATACCGAGCTCCT 58.605 39.130 8.47 0.00 0.00 3.69
398 399 4.454504 TGTTTTCAAAATACCGAGCTCCTC 59.545 41.667 8.47 0.00 0.00 3.71
410 411 3.144193 CTCCTCGAGCTCGGCCTT 61.144 66.667 33.98 0.00 40.29 4.35
411 412 3.423162 CTCCTCGAGCTCGGCCTTG 62.423 68.421 33.98 18.12 40.29 3.61
412 413 3.452786 CCTCGAGCTCGGCCTTGA 61.453 66.667 33.98 14.24 40.29 3.02
413 414 2.573869 CTCGAGCTCGGCCTTGAA 59.426 61.111 33.98 13.49 40.29 2.69
414 415 1.079819 CTCGAGCTCGGCCTTGAAA 60.080 57.895 33.98 12.73 40.29 2.69
415 416 0.670546 CTCGAGCTCGGCCTTGAAAA 60.671 55.000 33.98 11.99 40.29 2.29
416 417 0.250124 TCGAGCTCGGCCTTGAAAAA 60.250 50.000 33.98 9.52 40.29 1.94
417 418 0.804989 CGAGCTCGGCCTTGAAAAAT 59.195 50.000 28.40 0.00 35.37 1.82
418 419 1.202076 CGAGCTCGGCCTTGAAAAATC 60.202 52.381 28.40 0.00 35.37 2.17
419 420 1.133216 GAGCTCGGCCTTGAAAAATCC 59.867 52.381 0.00 0.00 0.00 3.01
420 421 0.179163 GCTCGGCCTTGAAAAATCCG 60.179 55.000 0.00 0.00 40.65 4.18
421 422 0.179163 CTCGGCCTTGAAAAATCCGC 60.179 55.000 0.00 0.00 39.61 5.54
422 423 0.891449 TCGGCCTTGAAAAATCCGCA 60.891 50.000 0.00 0.00 39.61 5.69
423 424 0.732538 CGGCCTTGAAAAATCCGCAC 60.733 55.000 0.00 0.00 34.78 5.34
424 425 0.603065 GGCCTTGAAAAATCCGCACT 59.397 50.000 0.00 0.00 0.00 4.40
425 426 1.402852 GGCCTTGAAAAATCCGCACTC 60.403 52.381 0.00 0.00 0.00 3.51
426 427 1.541588 GCCTTGAAAAATCCGCACTCT 59.458 47.619 0.00 0.00 0.00 3.24
427 428 2.669391 GCCTTGAAAAATCCGCACTCTG 60.669 50.000 0.00 0.00 0.00 3.35
428 429 2.589014 CTTGAAAAATCCGCACTCTGC 58.411 47.619 0.00 0.00 40.69 4.26
429 430 0.881118 TGAAAAATCCGCACTCTGCC 59.119 50.000 0.00 0.00 41.12 4.85
430 431 0.881118 GAAAAATCCGCACTCTGCCA 59.119 50.000 0.00 0.00 41.12 4.92
431 432 1.474077 GAAAAATCCGCACTCTGCCAT 59.526 47.619 0.00 0.00 41.12 4.40
432 433 0.813184 AAAATCCGCACTCTGCCATG 59.187 50.000 0.00 0.00 41.12 3.66
433 434 0.322816 AAATCCGCACTCTGCCATGT 60.323 50.000 0.00 0.00 41.12 3.21
434 435 0.541392 AATCCGCACTCTGCCATGTA 59.459 50.000 0.00 0.00 41.12 2.29
435 436 0.179073 ATCCGCACTCTGCCATGTAC 60.179 55.000 0.00 0.00 41.12 2.90
436 437 1.219124 CCGCACTCTGCCATGTACT 59.781 57.895 0.00 0.00 41.12 2.73
437 438 0.807667 CCGCACTCTGCCATGTACTC 60.808 60.000 0.00 0.00 41.12 2.59
438 439 0.807667 CGCACTCTGCCATGTACTCC 60.808 60.000 0.00 0.00 41.12 3.85
439 440 0.462759 GCACTCTGCCATGTACTCCC 60.463 60.000 0.00 0.00 37.42 4.30
440 441 0.179000 CACTCTGCCATGTACTCCCC 59.821 60.000 0.00 0.00 0.00 4.81
441 442 0.043334 ACTCTGCCATGTACTCCCCT 59.957 55.000 0.00 0.00 0.00 4.79
442 443 0.755686 CTCTGCCATGTACTCCCCTC 59.244 60.000 0.00 0.00 0.00 4.30
443 444 1.043116 TCTGCCATGTACTCCCCTCG 61.043 60.000 0.00 0.00 0.00 4.63
444 445 1.305802 TGCCATGTACTCCCCTCGT 60.306 57.895 0.00 0.00 0.00 4.18
445 446 0.907704 TGCCATGTACTCCCCTCGTT 60.908 55.000 0.00 0.00 0.00 3.85
446 447 0.179081 GCCATGTACTCCCCTCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
447 448 0.464452 CCATGTACTCCCCTCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
448 449 1.191535 CATGTACTCCCCTCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
449 450 1.762957 CATGTACTCCCCTCGTTCCAT 59.237 52.381 0.00 0.00 0.00 3.41
450 451 2.832643 TGTACTCCCCTCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
451 452 3.104519 TGTACTCCCCTCGTTCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
452 453 3.649843 TGTACTCCCCTCGTTCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
453 454 4.806892 TGTACTCCCCTCGTTCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
454 455 5.399991 TGTACTCCCCTCGTTCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
455 456 6.554784 TGTACTCCCCTCGTTCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
456 457 7.011994 TGTACTCCCCTCGTTCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
457 458 6.607004 ACTCCCCTCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
458 459 6.320518 ACTCCCCTCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
459 460 6.437793 ACTCCCCTCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
460 461 5.187186 TCCCCTCGTTCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
461 462 5.103000 CCCTCGTTCCATAATATAAGAGCG 58.897 45.833 3.49 3.49 34.75 5.03
462 463 5.336531 CCCTCGTTCCATAATATAAGAGCGT 60.337 44.000 7.97 0.00 34.98 5.07
463 464 6.157211 CCTCGTTCCATAATATAAGAGCGTT 58.843 40.000 7.97 0.00 34.98 4.84
464 465 6.645415 CCTCGTTCCATAATATAAGAGCGTTT 59.355 38.462 7.97 0.00 34.98 3.60
465 466 7.170998 CCTCGTTCCATAATATAAGAGCGTTTT 59.829 37.037 7.97 0.00 34.98 2.43
466 467 8.428186 TCGTTCCATAATATAAGAGCGTTTTT 57.572 30.769 7.97 0.00 34.98 1.94
508 509 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
509 510 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
510 511 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
511 512 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
512 513 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
513 514 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
514 515 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
515 516 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
516 517 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
517 518 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
518 519 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
519 520 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
520 521 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
521 522 0.613853 TGGGACGGAGGGAGTAGTTG 60.614 60.000 0.00 0.00 0.00 3.16
522 523 0.324091 GGGACGGAGGGAGTAGTTGA 60.324 60.000 0.00 0.00 0.00 3.18
523 524 1.688627 GGGACGGAGGGAGTAGTTGAT 60.689 57.143 0.00 0.00 0.00 2.57
524 525 2.108970 GGACGGAGGGAGTAGTTGATT 58.891 52.381 0.00 0.00 0.00 2.57
525 526 2.500504 GGACGGAGGGAGTAGTTGATTT 59.499 50.000 0.00 0.00 0.00 2.17
526 527 3.430513 GGACGGAGGGAGTAGTTGATTTC 60.431 52.174 0.00 0.00 0.00 2.17
527 528 3.442076 ACGGAGGGAGTAGTTGATTTCT 58.558 45.455 0.00 0.00 0.00 2.52
528 529 3.195825 ACGGAGGGAGTAGTTGATTTCTG 59.804 47.826 0.00 0.00 0.00 3.02
529 530 3.430929 CGGAGGGAGTAGTTGATTTCTGG 60.431 52.174 0.00 0.00 0.00 3.86
530 531 3.519913 GGAGGGAGTAGTTGATTTCTGGT 59.480 47.826 0.00 0.00 0.00 4.00
531 532 4.508662 GAGGGAGTAGTTGATTTCTGGTG 58.491 47.826 0.00 0.00 0.00 4.17
532 533 3.910627 AGGGAGTAGTTGATTTCTGGTGT 59.089 43.478 0.00 0.00 0.00 4.16
533 534 5.091552 AGGGAGTAGTTGATTTCTGGTGTA 58.908 41.667 0.00 0.00 0.00 2.90
534 535 5.046520 AGGGAGTAGTTGATTTCTGGTGTAC 60.047 44.000 0.00 0.00 0.00 2.90
535 536 4.863131 GGAGTAGTTGATTTCTGGTGTACG 59.137 45.833 0.00 0.00 0.00 3.67
543 544 6.228616 TGATTTCTGGTGTACGGAATGATA 57.771 37.500 0.00 0.00 43.71 2.15
544 545 6.280643 TGATTTCTGGTGTACGGAATGATAG 58.719 40.000 0.00 0.00 43.71 2.08
583 585 1.739466 CATGGGAGTGAACATGAACCG 59.261 52.381 0.00 0.00 45.55 4.44
603 605 2.674852 CGGTCAAACATGGTGATCTCTG 59.325 50.000 9.47 0.00 0.00 3.35
621 623 2.560105 TCTGTCTGTGTGTCCATCTCTG 59.440 50.000 0.00 0.00 0.00 3.35
637 639 0.398696 TCTGCTTCTTTGGGCGGTTA 59.601 50.000 0.00 0.00 36.35 2.85
682 684 0.670546 ACATGCCGAGAAGTTGACCG 60.671 55.000 0.00 0.00 0.00 4.79
686 688 0.319641 GCCGAGAAGTTGACCGAGTT 60.320 55.000 0.00 0.00 0.00 3.01
688 690 1.269621 CCGAGAAGTTGACCGAGTTGT 60.270 52.381 0.00 0.00 0.00 3.32
773 775 1.883084 CCGGGCTCAGTTCATACGC 60.883 63.158 0.00 0.00 0.00 4.42
776 783 1.421410 GGGCTCAGTTCATACGCACG 61.421 60.000 0.00 0.00 0.00 5.34
784 791 3.060272 CAGTTCATACGCACGAATCCATC 60.060 47.826 0.00 0.00 0.00 3.51
794 801 1.143684 ACGAATCCATCCCATTCCCAG 59.856 52.381 0.00 0.00 0.00 4.45
847 854 1.435577 GCGCCCGTGGGTTATATAAG 58.564 55.000 6.82 0.00 37.65 1.73
854 861 3.399330 CGTGGGTTATATAAGGCCACAG 58.601 50.000 5.01 0.00 0.00 3.66
856 863 2.714250 TGGGTTATATAAGGCCACAGGG 59.286 50.000 5.01 0.00 37.18 4.45
889 896 5.215160 GGCTAACACAAACAAACATCTCAG 58.785 41.667 0.00 0.00 0.00 3.35
890 897 5.215160 GCTAACACAAACAAACATCTCAGG 58.785 41.667 0.00 0.00 0.00 3.86
897 904 1.271597 ACAAACATCTCAGGCTCCACC 60.272 52.381 0.00 0.00 39.61 4.61
905 912 0.975556 TCAGGCTCCACCGCTAATCA 60.976 55.000 0.00 0.00 46.52 2.57
906 913 0.811616 CAGGCTCCACCGCTAATCAC 60.812 60.000 0.00 0.00 46.52 3.06
928 936 1.676006 ACCAACAAGACTCGCCTTTTG 59.324 47.619 0.00 0.00 0.00 2.44
934 942 3.028366 GACTCGCCTTTTGCTCCGC 62.028 63.158 0.00 0.00 38.05 5.54
987 995 1.890041 CCGAACCAACTCACGCCAA 60.890 57.895 0.00 0.00 0.00 4.52
1272 1290 1.814169 CTACGCGCTCCCTTTTCCC 60.814 63.158 5.73 0.00 0.00 3.97
1634 1685 2.035421 CCAAGCAGCAGCAGAACAA 58.965 52.632 3.17 0.00 45.49 2.83
1637 1688 0.383231 AAGCAGCAGCAGAACAACAC 59.617 50.000 3.17 0.00 45.49 3.32
1640 1691 0.029834 CAGCAGCAGAACAACACCAC 59.970 55.000 0.00 0.00 0.00 4.16
1866 1930 1.765230 AGCCAGTAGAACTAGACCGG 58.235 55.000 0.00 0.00 0.00 5.28
1901 1965 2.355009 CGCAAAGCCAACCAGCAC 60.355 61.111 0.00 0.00 34.23 4.40
1902 1966 2.355009 GCAAAGCCAACCAGCACG 60.355 61.111 0.00 0.00 34.23 5.34
1903 1967 2.355009 CAAAGCCAACCAGCACGC 60.355 61.111 0.00 0.00 34.23 5.34
1904 1968 2.832661 AAAGCCAACCAGCACGCA 60.833 55.556 0.00 0.00 34.23 5.24
1905 1969 3.137637 AAAGCCAACCAGCACGCAC 62.138 57.895 0.00 0.00 34.23 5.34
1918 1982 2.350895 CGCACCAAGGTCCATCCA 59.649 61.111 0.00 0.00 39.02 3.41
1919 1983 1.077501 CGCACCAAGGTCCATCCAT 60.078 57.895 0.00 0.00 39.02 3.41
1920 1984 1.097547 CGCACCAAGGTCCATCCATC 61.098 60.000 0.00 0.00 39.02 3.51
1921 1985 0.753111 GCACCAAGGTCCATCCATCC 60.753 60.000 0.00 0.00 39.02 3.51
1922 1986 0.625316 CACCAAGGTCCATCCATCCA 59.375 55.000 0.00 0.00 39.02 3.41
1923 1987 1.216175 CACCAAGGTCCATCCATCCAT 59.784 52.381 0.00 0.00 39.02 3.41
1924 1988 1.496429 ACCAAGGTCCATCCATCCATC 59.504 52.381 0.00 0.00 39.02 3.51
1925 1989 1.202976 CCAAGGTCCATCCATCCATCC 60.203 57.143 0.00 0.00 39.02 3.51
1926 1990 1.152649 AAGGTCCATCCATCCATCCC 58.847 55.000 0.00 0.00 39.02 3.85
1967 2034 2.034879 GCGTGGAGTGGACATGGTG 61.035 63.158 0.00 0.00 0.00 4.17
2003 2073 1.577421 GAGCCGAGCTCGTAGGATC 59.423 63.158 32.41 21.86 45.85 3.36
2098 2168 0.250553 ATCGGGCGTCTCCTAGAGAG 60.251 60.000 0.00 0.00 39.53 3.20
2099 2169 1.153127 CGGGCGTCTCCTAGAGAGT 60.153 63.158 7.76 0.00 43.71 3.24
2101 2171 1.874739 CGGGCGTCTCCTAGAGAGTAG 60.875 61.905 7.76 5.34 43.71 2.57
2103 2173 2.549349 GGGCGTCTCCTAGAGAGTAGAG 60.549 59.091 7.76 0.00 43.71 2.43
2112 2182 8.874744 TCTCCTAGAGAGTAGAGACTATACTC 57.125 42.308 23.83 23.83 46.28 2.59
2164 2234 1.298116 CTGTCGTGTCGTGTCGTGT 60.298 57.895 0.00 0.00 0.00 4.49
2165 2235 1.260198 CTGTCGTGTCGTGTCGTGTC 61.260 60.000 0.00 0.00 0.00 3.67
2166 2236 2.052854 TCGTGTCGTGTCGTGTCG 60.053 61.111 0.00 0.00 0.00 4.35
2167 2237 2.351548 CGTGTCGTGTCGTGTCGT 60.352 61.111 0.00 0.00 0.00 4.34
2168 2238 2.623427 CGTGTCGTGTCGTGTCGTG 61.623 63.158 0.00 0.00 0.00 4.35
2169 2239 2.025013 TGTCGTGTCGTGTCGTGG 59.975 61.111 0.00 0.00 0.00 4.94
2174 2244 1.422950 CGTGTCGTGTCGTGGGTTTT 61.423 55.000 0.00 0.00 0.00 2.43
2175 2245 0.027063 GTGTCGTGTCGTGGGTTTTG 59.973 55.000 0.00 0.00 0.00 2.44
2197 2268 0.933097 ATCACATCGCATCGACAAGC 59.067 50.000 0.00 0.00 39.18 4.01
2203 2274 1.346365 TCGCATCGACAAGCTGTAAC 58.654 50.000 0.00 0.00 0.00 2.50
2210 2281 1.726791 CGACAAGCTGTAACGCTGATT 59.273 47.619 0.00 0.00 40.79 2.57
2211 2282 2.472886 CGACAAGCTGTAACGCTGATTG 60.473 50.000 0.00 0.00 44.43 2.67
2212 2283 2.736721 GACAAGCTGTAACGCTGATTGA 59.263 45.455 8.58 0.00 42.49 2.57
2213 2284 3.338249 ACAAGCTGTAACGCTGATTGAT 58.662 40.909 8.58 0.00 42.49 2.57
2225 2296 2.291741 GCTGATTGATCCCCGAATTCAC 59.708 50.000 6.22 0.00 0.00 3.18
2234 2305 1.303309 CCCGAATTCACAGCATCTCC 58.697 55.000 6.22 0.00 0.00 3.71
2252 2323 6.628175 GCATCTCCACAGTCTTACATAAGTGA 60.628 42.308 0.00 0.00 34.93 3.41
2254 2325 8.633561 CATCTCCACAGTCTTACATAAGTGATA 58.366 37.037 0.00 0.00 34.93 2.15
2255 2326 7.997482 TCTCCACAGTCTTACATAAGTGATAC 58.003 38.462 0.00 0.00 34.93 2.24
2256 2327 7.834681 TCTCCACAGTCTTACATAAGTGATACT 59.165 37.037 0.00 0.00 34.93 2.12
2257 2328 9.121658 CTCCACAGTCTTACATAAGTGATACTA 57.878 37.037 0.00 0.00 34.93 1.82
2268 2339 8.948631 ACATAAGTGATACTAATTCCAGTGTG 57.051 34.615 0.00 0.00 0.00 3.82
2280 2351 1.159713 CCAGTGTGCGTTCTTGAGCA 61.160 55.000 0.00 0.00 41.55 4.26
2289 2360 1.135859 CGTTCTTGAGCAAGCACCATC 60.136 52.381 5.37 0.00 38.28 3.51
2292 2363 0.445436 CTTGAGCAAGCACCATCGTC 59.555 55.000 0.00 0.00 0.00 4.20
2293 2364 0.035317 TTGAGCAAGCACCATCGTCT 59.965 50.000 0.00 0.00 0.00 4.18
2304 2379 0.103937 CCATCGTCTTCCTCCTCTGC 59.896 60.000 0.00 0.00 0.00 4.26
2311 2386 1.277557 TCTTCCTCCTCTGCTTCTTGC 59.722 52.381 0.00 0.00 43.25 4.01
2313 2388 0.901124 TCCTCCTCTGCTTCTTGCTC 59.099 55.000 0.00 0.00 43.37 4.26
2315 2390 1.405797 CCTCCTCTGCTTCTTGCTCTG 60.406 57.143 0.00 0.00 43.37 3.35
2316 2391 0.036577 TCCTCTGCTTCTTGCTCTGC 60.037 55.000 0.00 0.00 43.37 4.26
2319 2394 2.152830 CTCTGCTTCTTGCTCTGCTTT 58.847 47.619 0.00 0.00 43.37 3.51
2320 2395 2.149578 TCTGCTTCTTGCTCTGCTTTC 58.850 47.619 0.00 0.00 43.37 2.62
2321 2396 1.199558 CTGCTTCTTGCTCTGCTTTCC 59.800 52.381 0.00 0.00 43.37 3.13
2322 2397 0.167689 GCTTCTTGCTCTGCTTTCCG 59.832 55.000 0.00 0.00 38.95 4.30
2323 2398 1.517242 CTTCTTGCTCTGCTTTCCGT 58.483 50.000 0.00 0.00 0.00 4.69
2324 2399 1.876156 CTTCTTGCTCTGCTTTCCGTT 59.124 47.619 0.00 0.00 0.00 4.44
2325 2400 1.967319 TCTTGCTCTGCTTTCCGTTT 58.033 45.000 0.00 0.00 0.00 3.60
2326 2401 1.873591 TCTTGCTCTGCTTTCCGTTTC 59.126 47.619 0.00 0.00 0.00 2.78
2327 2402 1.603802 CTTGCTCTGCTTTCCGTTTCA 59.396 47.619 0.00 0.00 0.00 2.69
2328 2403 1.229428 TGCTCTGCTTTCCGTTTCAG 58.771 50.000 0.00 0.00 0.00 3.02
2329 2404 1.230324 GCTCTGCTTTCCGTTTCAGT 58.770 50.000 0.00 0.00 0.00 3.41
2356 2431 1.338200 GCCTCACTCCACAGTAACAGG 60.338 57.143 0.00 0.00 0.00 4.00
2357 2432 1.338200 CCTCACTCCACAGTAACAGGC 60.338 57.143 0.00 0.00 0.00 4.85
2389 2464 0.394899 GGAGGAAGAAGGCCATGGTG 60.395 60.000 14.67 0.00 0.00 4.17
2455 2567 2.178912 TGTGGTCCAACGGAGAATTC 57.821 50.000 0.00 0.00 29.39 2.17
2456 2568 1.697432 TGTGGTCCAACGGAGAATTCT 59.303 47.619 7.95 7.95 29.39 2.40
2457 2569 2.105821 TGTGGTCCAACGGAGAATTCTT 59.894 45.455 9.87 0.00 29.39 2.52
2458 2570 2.742589 GTGGTCCAACGGAGAATTCTTC 59.257 50.000 9.87 6.54 29.39 2.87
2505 2617 3.998156 CTGCAAGCATGTGCCTCT 58.002 55.556 5.90 0.00 44.26 3.69
2506 2618 1.506718 CTGCAAGCATGTGCCTCTG 59.493 57.895 5.90 0.00 44.26 3.35
2507 2619 1.228337 TGCAAGCATGTGCCTCTGT 60.228 52.632 5.90 0.00 44.26 3.41
2508 2620 1.211969 GCAAGCATGTGCCTCTGTG 59.788 57.895 0.57 0.00 43.38 3.66
2509 2621 1.521450 GCAAGCATGTGCCTCTGTGT 61.521 55.000 0.57 0.00 43.38 3.72
2510 2622 1.812235 CAAGCATGTGCCTCTGTGTA 58.188 50.000 0.57 0.00 43.38 2.90
2511 2623 1.736126 CAAGCATGTGCCTCTGTGTAG 59.264 52.381 0.57 0.00 43.38 2.74
2513 2625 1.066573 AGCATGTGCCTCTGTGTAGAC 60.067 52.381 0.57 0.00 43.38 2.59
2514 2626 1.338105 GCATGTGCCTCTGTGTAGACA 60.338 52.381 0.00 0.00 34.31 3.41
2516 2628 5.968541 GCATGTGCCTCTGTGTAGACACA 62.969 52.174 14.47 14.47 43.92 3.72
2569 2690 2.242196 TCAACCAATCCCCCAAGATCTC 59.758 50.000 0.00 0.00 0.00 2.75
2623 2748 2.356135 GACGGATAACAGCACACCATT 58.644 47.619 0.00 0.00 0.00 3.16
2624 2749 2.083774 ACGGATAACAGCACACCATTG 58.916 47.619 0.00 0.00 0.00 2.82
2636 2761 3.091545 CACACCATTGTCCTAATTGGCT 58.908 45.455 0.00 0.00 31.66 4.75
2686 2815 5.344743 TGGCGATTCTTCTTCAGTAATCT 57.655 39.130 0.00 0.00 0.00 2.40
2687 2816 6.465439 TGGCGATTCTTCTTCAGTAATCTA 57.535 37.500 0.00 0.00 0.00 1.98
2688 2817 6.273825 TGGCGATTCTTCTTCAGTAATCTAC 58.726 40.000 0.00 0.00 0.00 2.59
2689 2818 6.127451 TGGCGATTCTTCTTCAGTAATCTACA 60.127 38.462 0.00 0.00 0.00 2.74
2690 2819 6.199342 GGCGATTCTTCTTCAGTAATCTACAC 59.801 42.308 0.00 0.00 0.00 2.90
2691 2820 6.752351 GCGATTCTTCTTCAGTAATCTACACA 59.248 38.462 0.00 0.00 0.00 3.72
2692 2821 7.043722 GCGATTCTTCTTCAGTAATCTACACAG 60.044 40.741 0.00 0.00 0.00 3.66
2693 2822 8.184848 CGATTCTTCTTCAGTAATCTACACAGA 58.815 37.037 0.00 0.00 34.56 3.41
2694 2823 9.515020 GATTCTTCTTCAGTAATCTACACAGAG 57.485 37.037 0.00 0.00 33.22 3.35
2698 2827 7.627298 TCTTCAGTAATCTACACAGAGGTAC 57.373 40.000 0.00 0.00 33.22 3.34
2713 2852 4.158025 CAGAGGTACGGACTACAGTGAAAT 59.842 45.833 0.00 0.00 0.00 2.17
2715 2854 4.084287 AGGTACGGACTACAGTGAAATGA 58.916 43.478 0.00 0.00 0.00 2.57
2741 2888 1.769098 CTGGATGAATGACTGGCGCG 61.769 60.000 0.00 0.00 0.00 6.86
2813 2960 2.671396 ACGTCGCGAGCAAATATTTTCT 59.329 40.909 10.24 0.00 0.00 2.52
2818 4488 6.083778 CGTCGCGAGCAAATATTTTCTTATTC 59.916 38.462 10.24 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.704070 GAGGGGAATCCAGATGCATCT 59.296 52.381 23.75 23.75 38.24 2.90
2 3 1.271817 GGAGGGGAATCCAGATGCATC 60.272 57.143 19.37 19.37 39.34 3.91
3 4 0.776176 GGAGGGGAATCCAGATGCAT 59.224 55.000 0.00 0.00 39.34 3.96
4 5 1.355718 GGGAGGGGAATCCAGATGCA 61.356 60.000 0.09 0.00 41.52 3.96
5 6 1.458045 GGGAGGGGAATCCAGATGC 59.542 63.158 0.09 0.00 41.52 3.91
6 7 1.772819 CGGGGAGGGGAATCCAGATG 61.773 65.000 0.09 0.00 41.52 2.90
7 8 1.462238 CGGGGAGGGGAATCCAGAT 60.462 63.158 0.09 0.00 41.52 2.90
8 9 1.596006 TACGGGGAGGGGAATCCAGA 61.596 60.000 0.09 0.00 41.52 3.86
9 10 1.074775 TACGGGGAGGGGAATCCAG 60.075 63.158 0.09 0.00 41.52 3.86
10 11 1.074775 CTACGGGGAGGGGAATCCA 60.075 63.158 0.09 0.00 41.52 3.41
11 12 2.517798 GCTACGGGGAGGGGAATCC 61.518 68.421 0.00 0.00 38.76 3.01
12 13 2.868986 CGCTACGGGGAGGGGAATC 61.869 68.421 0.00 0.00 0.00 2.52
13 14 2.842936 CGCTACGGGGAGGGGAAT 60.843 66.667 0.00 0.00 0.00 3.01
14 15 4.064768 TCGCTACGGGGAGGGGAA 62.065 66.667 0.00 0.00 0.00 3.97
15 16 4.828296 GTCGCTACGGGGAGGGGA 62.828 72.222 0.00 0.00 35.08 4.81
18 19 2.838225 ATGGTCGCTACGGGGAGG 60.838 66.667 0.00 0.00 35.08 4.30
19 20 2.728817 GATGGTCGCTACGGGGAG 59.271 66.667 0.00 0.00 35.08 4.30
20 21 3.214123 CGATGGTCGCTACGGGGA 61.214 66.667 0.00 0.00 31.14 4.81
29 30 0.301687 GCATGTTACTGCGATGGTCG 59.698 55.000 0.00 0.00 43.89 4.79
30 31 1.328680 CTGCATGTTACTGCGATGGTC 59.671 52.381 0.00 0.00 45.30 4.02
31 32 1.066215 TCTGCATGTTACTGCGATGGT 60.066 47.619 0.00 0.00 45.30 3.55
32 33 1.596260 CTCTGCATGTTACTGCGATGG 59.404 52.381 0.00 0.00 45.30 3.51
33 34 1.596260 CCTCTGCATGTTACTGCGATG 59.404 52.381 0.00 0.00 45.30 3.84
34 35 1.473965 CCCTCTGCATGTTACTGCGAT 60.474 52.381 0.00 0.00 45.30 4.58
35 36 0.108186 CCCTCTGCATGTTACTGCGA 60.108 55.000 0.00 3.34 45.30 5.10
36 37 1.091771 CCCCTCTGCATGTTACTGCG 61.092 60.000 0.00 0.00 45.30 5.18
37 38 0.253044 TCCCCTCTGCATGTTACTGC 59.747 55.000 0.00 1.01 42.62 4.40
38 39 1.134280 CCTCCCCTCTGCATGTTACTG 60.134 57.143 0.00 0.00 0.00 2.74
39 40 1.207791 CCTCCCCTCTGCATGTTACT 58.792 55.000 0.00 0.00 0.00 2.24
40 41 0.912486 ACCTCCCCTCTGCATGTTAC 59.088 55.000 0.00 0.00 0.00 2.50
41 42 0.911769 CACCTCCCCTCTGCATGTTA 59.088 55.000 0.00 0.00 0.00 2.41
42 43 0.842030 TCACCTCCCCTCTGCATGTT 60.842 55.000 0.00 0.00 0.00 2.71
43 44 1.229625 TCACCTCCCCTCTGCATGT 60.230 57.895 0.00 0.00 0.00 3.21
44 45 1.270414 ACTCACCTCCCCTCTGCATG 61.270 60.000 0.00 0.00 0.00 4.06
45 46 0.980231 GACTCACCTCCCCTCTGCAT 60.980 60.000 0.00 0.00 0.00 3.96
46 47 1.610673 GACTCACCTCCCCTCTGCA 60.611 63.158 0.00 0.00 0.00 4.41
47 48 0.033011 TAGACTCACCTCCCCTCTGC 60.033 60.000 0.00 0.00 0.00 4.26
48 49 1.770294 GTAGACTCACCTCCCCTCTG 58.230 60.000 0.00 0.00 0.00 3.35
49 50 0.256464 CGTAGACTCACCTCCCCTCT 59.744 60.000 0.00 0.00 0.00 3.69
50 51 0.752376 CCGTAGACTCACCTCCCCTC 60.752 65.000 0.00 0.00 0.00 4.30
51 52 1.306970 CCGTAGACTCACCTCCCCT 59.693 63.158 0.00 0.00 0.00 4.79
52 53 1.757340 CCCGTAGACTCACCTCCCC 60.757 68.421 0.00 0.00 0.00 4.81
53 54 0.614134 AACCCGTAGACTCACCTCCC 60.614 60.000 0.00 0.00 0.00 4.30
54 55 0.531200 CAACCCGTAGACTCACCTCC 59.469 60.000 0.00 0.00 0.00 4.30
55 56 1.201880 GACAACCCGTAGACTCACCTC 59.798 57.143 0.00 0.00 0.00 3.85
56 57 1.254954 GACAACCCGTAGACTCACCT 58.745 55.000 0.00 0.00 0.00 4.00
57 58 0.245813 GGACAACCCGTAGACTCACC 59.754 60.000 0.00 0.00 0.00 4.02
58 59 3.808583 GGACAACCCGTAGACTCAC 57.191 57.895 0.00 0.00 0.00 3.51
68 69 2.047179 GGCTCTGTCGGACAACCC 60.047 66.667 12.54 8.67 0.00 4.11
69 70 2.047179 GGGCTCTGTCGGACAACC 60.047 66.667 12.54 13.04 0.00 3.77
70 71 1.374758 CTGGGCTCTGTCGGACAAC 60.375 63.158 12.54 4.76 0.00 3.32
71 72 1.118965 TTCTGGGCTCTGTCGGACAA 61.119 55.000 12.54 2.95 0.00 3.18
72 73 1.533033 TTCTGGGCTCTGTCGGACA 60.533 57.895 10.88 10.88 0.00 4.02
73 74 1.216710 CTTCTGGGCTCTGTCGGAC 59.783 63.158 0.00 0.00 0.00 4.79
74 75 1.984570 CCTTCTGGGCTCTGTCGGA 60.985 63.158 0.00 0.00 0.00 4.55
75 76 1.544825 TTCCTTCTGGGCTCTGTCGG 61.545 60.000 0.00 0.00 34.39 4.79
76 77 0.539051 ATTCCTTCTGGGCTCTGTCG 59.461 55.000 0.00 0.00 34.39 4.35
77 78 1.556911 TCATTCCTTCTGGGCTCTGTC 59.443 52.381 0.00 0.00 34.39 3.51
78 79 1.558756 CTCATTCCTTCTGGGCTCTGT 59.441 52.381 0.00 0.00 34.39 3.41
79 80 1.558756 ACTCATTCCTTCTGGGCTCTG 59.441 52.381 0.00 0.00 34.39 3.35
80 81 1.963985 ACTCATTCCTTCTGGGCTCT 58.036 50.000 0.00 0.00 34.39 4.09
81 82 2.290577 ACAACTCATTCCTTCTGGGCTC 60.291 50.000 0.00 0.00 34.39 4.70
82 83 1.707427 ACAACTCATTCCTTCTGGGCT 59.293 47.619 0.00 0.00 34.39 5.19
83 84 2.206576 ACAACTCATTCCTTCTGGGC 57.793 50.000 0.00 0.00 34.39 5.36
84 85 2.744202 CGAACAACTCATTCCTTCTGGG 59.256 50.000 0.00 0.00 0.00 4.45
85 86 2.160417 GCGAACAACTCATTCCTTCTGG 59.840 50.000 0.00 0.00 0.00 3.86
86 87 2.160417 GGCGAACAACTCATTCCTTCTG 59.840 50.000 0.00 0.00 0.00 3.02
87 88 2.427506 GGCGAACAACTCATTCCTTCT 58.572 47.619 0.00 0.00 0.00 2.85
88 89 1.468914 GGGCGAACAACTCATTCCTTC 59.531 52.381 0.00 0.00 0.00 3.46
89 90 1.073923 AGGGCGAACAACTCATTCCTT 59.926 47.619 0.00 0.00 0.00 3.36
90 91 0.693049 AGGGCGAACAACTCATTCCT 59.307 50.000 0.00 0.00 0.00 3.36
91 92 2.396590 TAGGGCGAACAACTCATTCC 57.603 50.000 0.00 0.00 0.00 3.01
92 93 2.093783 CGTTAGGGCGAACAACTCATTC 59.906 50.000 0.00 0.00 0.00 2.67
93 94 2.073816 CGTTAGGGCGAACAACTCATT 58.926 47.619 0.00 0.00 0.00 2.57
94 95 1.001633 ACGTTAGGGCGAACAACTCAT 59.998 47.619 0.00 0.00 35.59 2.90
95 96 0.390124 ACGTTAGGGCGAACAACTCA 59.610 50.000 0.00 0.00 35.59 3.41
96 97 1.066136 GACGTTAGGGCGAACAACTC 58.934 55.000 0.00 0.00 35.59 3.01
97 98 0.320160 GGACGTTAGGGCGAACAACT 60.320 55.000 0.00 0.00 35.59 3.16
98 99 1.293963 GGGACGTTAGGGCGAACAAC 61.294 60.000 0.00 0.00 35.59 3.32
99 100 1.004679 GGGACGTTAGGGCGAACAA 60.005 57.895 0.00 0.00 35.59 2.83
100 101 1.474332 AAGGGACGTTAGGGCGAACA 61.474 55.000 0.00 0.00 35.59 3.18
101 102 0.321034 AAAGGGACGTTAGGGCGAAC 60.321 55.000 0.00 0.00 35.59 3.95
102 103 0.037046 GAAAGGGACGTTAGGGCGAA 60.037 55.000 0.00 0.00 35.59 4.70
103 104 1.186917 TGAAAGGGACGTTAGGGCGA 61.187 55.000 0.00 0.00 35.59 5.54
104 105 1.017701 GTGAAAGGGACGTTAGGGCG 61.018 60.000 0.00 0.00 37.94 6.13
105 106 1.017701 CGTGAAAGGGACGTTAGGGC 61.018 60.000 0.00 0.00 32.06 5.19
106 107 0.604578 TCGTGAAAGGGACGTTAGGG 59.395 55.000 0.00 0.00 38.04 3.53
107 108 1.542915 TCTCGTGAAAGGGACGTTAGG 59.457 52.381 0.00 0.00 38.04 2.69
108 109 2.415625 CCTCTCGTGAAAGGGACGTTAG 60.416 54.545 0.00 0.00 38.04 2.34
109 110 1.542915 CCTCTCGTGAAAGGGACGTTA 59.457 52.381 0.00 0.00 38.04 3.18
110 111 0.317479 CCTCTCGTGAAAGGGACGTT 59.683 55.000 0.00 0.00 38.04 3.99
111 112 1.965219 CCTCTCGTGAAAGGGACGT 59.035 57.895 0.00 0.00 38.04 4.34
112 113 4.891566 CCTCTCGTGAAAGGGACG 57.108 61.111 0.00 0.00 38.20 4.79
129 130 1.285078 AGTACATCCTTTTGCTCCCCC 59.715 52.381 0.00 0.00 0.00 5.40
130 131 2.808906 AGTACATCCTTTTGCTCCCC 57.191 50.000 0.00 0.00 0.00 4.81
131 132 4.137543 CCATAGTACATCCTTTTGCTCCC 58.862 47.826 0.00 0.00 0.00 4.30
132 133 4.137543 CCCATAGTACATCCTTTTGCTCC 58.862 47.826 0.00 0.00 0.00 4.70
133 134 4.781934 ACCCATAGTACATCCTTTTGCTC 58.218 43.478 0.00 0.00 0.00 4.26
134 135 4.683400 CGACCCATAGTACATCCTTTTGCT 60.683 45.833 0.00 0.00 0.00 3.91
135 136 3.560068 CGACCCATAGTACATCCTTTTGC 59.440 47.826 0.00 0.00 0.00 3.68
136 137 5.018539 TCGACCCATAGTACATCCTTTTG 57.981 43.478 0.00 0.00 0.00 2.44
137 138 5.687166 TTCGACCCATAGTACATCCTTTT 57.313 39.130 0.00 0.00 0.00 2.27
138 139 5.687166 TTTCGACCCATAGTACATCCTTT 57.313 39.130 0.00 0.00 0.00 3.11
139 140 5.365605 TCATTTCGACCCATAGTACATCCTT 59.634 40.000 0.00 0.00 0.00 3.36
140 141 4.899457 TCATTTCGACCCATAGTACATCCT 59.101 41.667 0.00 0.00 0.00 3.24
141 142 5.209818 TCATTTCGACCCATAGTACATCC 57.790 43.478 0.00 0.00 0.00 3.51
142 143 5.696724 CCTTCATTTCGACCCATAGTACATC 59.303 44.000 0.00 0.00 0.00 3.06
143 144 5.365605 TCCTTCATTTCGACCCATAGTACAT 59.634 40.000 0.00 0.00 0.00 2.29
144 145 4.712829 TCCTTCATTTCGACCCATAGTACA 59.287 41.667 0.00 0.00 0.00 2.90
145 146 5.272283 TCCTTCATTTCGACCCATAGTAC 57.728 43.478 0.00 0.00 0.00 2.73
146 147 6.014840 GGTATCCTTCATTTCGACCCATAGTA 60.015 42.308 0.00 0.00 0.00 1.82
147 148 5.221661 GGTATCCTTCATTTCGACCCATAGT 60.222 44.000 0.00 0.00 0.00 2.12
148 149 5.221641 TGGTATCCTTCATTTCGACCCATAG 60.222 44.000 0.00 0.00 0.00 2.23
149 150 4.656575 TGGTATCCTTCATTTCGACCCATA 59.343 41.667 0.00 0.00 0.00 2.74
150 151 3.458118 TGGTATCCTTCATTTCGACCCAT 59.542 43.478 0.00 0.00 0.00 4.00
151 152 2.841266 TGGTATCCTTCATTTCGACCCA 59.159 45.455 0.00 0.00 0.00 4.51
152 153 3.553828 TGGTATCCTTCATTTCGACCC 57.446 47.619 0.00 0.00 0.00 4.46
153 154 3.626217 GGTTGGTATCCTTCATTTCGACC 59.374 47.826 0.00 0.00 0.00 4.79
154 155 3.308866 CGGTTGGTATCCTTCATTTCGAC 59.691 47.826 0.00 0.00 0.00 4.20
155 156 3.055675 ACGGTTGGTATCCTTCATTTCGA 60.056 43.478 0.00 0.00 0.00 3.71
156 157 3.267483 ACGGTTGGTATCCTTCATTTCG 58.733 45.455 0.00 0.00 0.00 3.46
157 158 6.746745 TTAACGGTTGGTATCCTTCATTTC 57.253 37.500 3.07 0.00 0.00 2.17
158 159 7.527568 TTTTAACGGTTGGTATCCTTCATTT 57.472 32.000 3.07 0.00 0.00 2.32
159 160 7.527568 TTTTTAACGGTTGGTATCCTTCATT 57.472 32.000 3.07 0.00 0.00 2.57
183 184 2.101249 CCGCTACATGGCATCCATTTTT 59.899 45.455 0.00 0.00 42.23 1.94
184 185 1.682854 CCGCTACATGGCATCCATTTT 59.317 47.619 0.00 0.00 42.23 1.82
185 186 1.133823 TCCGCTACATGGCATCCATTT 60.134 47.619 0.00 0.00 42.23 2.32
186 187 0.473755 TCCGCTACATGGCATCCATT 59.526 50.000 0.00 0.00 42.23 3.16
187 188 0.473755 TTCCGCTACATGGCATCCAT 59.526 50.000 0.00 0.00 46.37 3.41
188 189 0.254462 TTTCCGCTACATGGCATCCA 59.746 50.000 0.00 0.00 38.19 3.41
189 190 1.388547 TTTTCCGCTACATGGCATCC 58.611 50.000 0.00 0.00 0.00 3.51
190 191 2.859806 GCATTTTCCGCTACATGGCATC 60.860 50.000 0.00 0.00 0.00 3.91
191 192 1.067516 GCATTTTCCGCTACATGGCAT 59.932 47.619 0.00 0.00 0.00 4.40
192 193 0.455410 GCATTTTCCGCTACATGGCA 59.545 50.000 0.00 0.00 0.00 4.92
193 194 0.740737 AGCATTTTCCGCTACATGGC 59.259 50.000 0.00 0.00 38.15 4.40
194 195 3.546020 CGTAAGCATTTTCCGCTACATGG 60.546 47.826 0.00 0.00 39.29 3.66
195 196 3.546020 CCGTAAGCATTTTCCGCTACATG 60.546 47.826 0.00 0.00 39.29 3.21
196 197 2.612212 CCGTAAGCATTTTCCGCTACAT 59.388 45.455 0.00 0.00 39.29 2.29
197 198 2.004017 CCGTAAGCATTTTCCGCTACA 58.996 47.619 0.00 0.00 39.29 2.74
198 199 2.273557 TCCGTAAGCATTTTCCGCTAC 58.726 47.619 0.00 0.00 39.29 3.58
199 200 2.546778 CTCCGTAAGCATTTTCCGCTA 58.453 47.619 0.00 0.00 39.29 4.26
200 201 1.369625 CTCCGTAAGCATTTTCCGCT 58.630 50.000 0.00 0.00 42.98 5.52
201 202 0.377203 CCTCCGTAAGCATTTTCCGC 59.623 55.000 0.00 0.00 0.00 5.54
202 203 0.377203 GCCTCCGTAAGCATTTTCCG 59.623 55.000 0.00 0.00 0.00 4.30
203 204 1.401905 CAGCCTCCGTAAGCATTTTCC 59.598 52.381 0.00 0.00 0.00 3.13
204 205 2.352960 CTCAGCCTCCGTAAGCATTTTC 59.647 50.000 0.00 0.00 0.00 2.29
205 206 2.359900 CTCAGCCTCCGTAAGCATTTT 58.640 47.619 0.00 0.00 0.00 1.82
206 207 2.014068 GCTCAGCCTCCGTAAGCATTT 61.014 52.381 0.00 0.00 33.21 2.32
207 208 0.462759 GCTCAGCCTCCGTAAGCATT 60.463 55.000 0.00 0.00 33.21 3.56
208 209 1.144936 GCTCAGCCTCCGTAAGCAT 59.855 57.895 0.00 0.00 33.21 3.79
209 210 1.949847 GAGCTCAGCCTCCGTAAGCA 61.950 60.000 9.40 0.00 35.42 3.91
210 211 1.227118 GAGCTCAGCCTCCGTAAGC 60.227 63.158 9.40 0.00 0.00 3.09
211 212 0.820871 AAGAGCTCAGCCTCCGTAAG 59.179 55.000 17.77 0.00 32.17 2.34
212 213 0.532573 CAAGAGCTCAGCCTCCGTAA 59.467 55.000 17.77 0.00 32.17 3.18
213 214 1.323271 CCAAGAGCTCAGCCTCCGTA 61.323 60.000 17.77 0.00 32.17 4.02
214 215 2.654079 CCAAGAGCTCAGCCTCCGT 61.654 63.158 17.77 0.00 32.17 4.69
215 216 2.186384 CCAAGAGCTCAGCCTCCG 59.814 66.667 17.77 0.00 32.17 4.63
216 217 2.588989 CCCAAGAGCTCAGCCTCC 59.411 66.667 17.77 0.00 32.17 4.30
217 218 2.124778 GCCCAAGAGCTCAGCCTC 60.125 66.667 17.77 0.00 0.00 4.70
218 219 3.726144 GGCCCAAGAGCTCAGCCT 61.726 66.667 22.57 0.00 40.57 4.58
221 222 2.262774 ATTCCGGCCCAAGAGCTCAG 62.263 60.000 17.77 7.89 0.00 3.35
222 223 1.852157 AATTCCGGCCCAAGAGCTCA 61.852 55.000 17.77 0.00 0.00 4.26
223 224 0.681243 AAATTCCGGCCCAAGAGCTC 60.681 55.000 5.27 5.27 0.00 4.09
224 225 0.251787 AAAATTCCGGCCCAAGAGCT 60.252 50.000 0.00 0.00 0.00 4.09
225 226 0.173481 GAAAATTCCGGCCCAAGAGC 59.827 55.000 0.00 0.00 0.00 4.09
226 227 1.839424 AGAAAATTCCGGCCCAAGAG 58.161 50.000 0.00 0.00 0.00 2.85
227 228 2.302587 AAGAAAATTCCGGCCCAAGA 57.697 45.000 0.00 0.00 0.00 3.02
228 229 2.298729 TGAAAGAAAATTCCGGCCCAAG 59.701 45.455 0.00 0.00 0.00 3.61
229 230 2.320781 TGAAAGAAAATTCCGGCCCAA 58.679 42.857 0.00 0.00 0.00 4.12
230 231 2.002505 TGAAAGAAAATTCCGGCCCA 57.997 45.000 0.00 0.00 0.00 5.36
231 232 3.610040 AATGAAAGAAAATTCCGGCCC 57.390 42.857 0.00 0.00 0.00 5.80
232 233 4.152223 CACAAATGAAAGAAAATTCCGGCC 59.848 41.667 0.00 0.00 0.00 6.13
233 234 4.377328 GCACAAATGAAAGAAAATTCCGGC 60.377 41.667 0.00 0.00 0.00 6.13
234 235 4.749099 TGCACAAATGAAAGAAAATTCCGG 59.251 37.500 0.00 0.00 0.00 5.14
235 236 5.613142 GCTGCACAAATGAAAGAAAATTCCG 60.613 40.000 0.00 0.00 0.00 4.30
236 237 5.334337 GGCTGCACAAATGAAAGAAAATTCC 60.334 40.000 0.50 0.00 0.00 3.01
237 238 5.467735 AGGCTGCACAAATGAAAGAAAATTC 59.532 36.000 0.50 0.00 0.00 2.17
238 239 5.370679 AGGCTGCACAAATGAAAGAAAATT 58.629 33.333 0.50 0.00 0.00 1.82
239 240 4.964593 AGGCTGCACAAATGAAAGAAAAT 58.035 34.783 0.50 0.00 0.00 1.82
240 241 4.405116 AGGCTGCACAAATGAAAGAAAA 57.595 36.364 0.50 0.00 0.00 2.29
241 242 4.340666 TGTAGGCTGCACAAATGAAAGAAA 59.659 37.500 0.00 0.00 0.00 2.52
242 243 3.888323 TGTAGGCTGCACAAATGAAAGAA 59.112 39.130 0.00 0.00 0.00 2.52
243 244 3.485394 TGTAGGCTGCACAAATGAAAGA 58.515 40.909 0.00 0.00 0.00 2.52
244 245 3.921119 TGTAGGCTGCACAAATGAAAG 57.079 42.857 0.00 0.00 0.00 2.62
245 246 4.662468 TTTGTAGGCTGCACAAATGAAA 57.338 36.364 4.26 0.00 40.12 2.69
250 251 3.221771 AGTGATTTGTAGGCTGCACAAA 58.778 40.909 17.16 17.16 46.64 2.83
251 252 2.862541 AGTGATTTGTAGGCTGCACAA 58.137 42.857 4.26 1.14 34.18 3.33
252 253 2.566833 AGTGATTTGTAGGCTGCACA 57.433 45.000 4.26 0.00 0.00 4.57
253 254 3.127030 GGTTAGTGATTTGTAGGCTGCAC 59.873 47.826 4.26 0.00 0.00 4.57
254 255 3.244735 TGGTTAGTGATTTGTAGGCTGCA 60.245 43.478 0.00 0.00 0.00 4.41
255 256 3.343617 TGGTTAGTGATTTGTAGGCTGC 58.656 45.455 0.00 0.00 0.00 5.25
256 257 6.515272 AAATGGTTAGTGATTTGTAGGCTG 57.485 37.500 0.00 0.00 0.00 4.85
257 258 7.539034 AAAAATGGTTAGTGATTTGTAGGCT 57.461 32.000 0.00 0.00 0.00 4.58
281 282 9.212687 CAAGAACGTGTTAAATTTCGTAAAGAA 57.787 29.630 0.00 0.00 35.49 2.52
282 283 7.373966 GCAAGAACGTGTTAAATTTCGTAAAGA 59.626 33.333 0.00 0.00 35.49 2.52
283 284 7.479553 GCAAGAACGTGTTAAATTTCGTAAAG 58.520 34.615 0.00 0.00 35.49 1.85
284 285 6.138858 CGCAAGAACGTGTTAAATTTCGTAAA 59.861 34.615 0.00 0.00 43.02 2.01
285 286 5.616383 CGCAAGAACGTGTTAAATTTCGTAA 59.384 36.000 0.00 0.00 43.02 3.18
286 287 5.131890 CGCAAGAACGTGTTAAATTTCGTA 58.868 37.500 0.00 0.00 43.02 3.43
287 288 3.963724 CGCAAGAACGTGTTAAATTTCGT 59.036 39.130 0.00 0.00 43.02 3.85
288 289 3.356658 CCGCAAGAACGTGTTAAATTTCG 59.643 43.478 0.00 0.00 43.02 3.46
289 290 4.529446 TCCGCAAGAACGTGTTAAATTTC 58.471 39.130 0.00 0.00 43.02 2.17
290 291 4.555348 TCCGCAAGAACGTGTTAAATTT 57.445 36.364 0.00 0.00 43.02 1.82
291 292 4.555348 TTCCGCAAGAACGTGTTAAATT 57.445 36.364 0.00 0.00 43.02 1.82
292 293 4.472286 CATTCCGCAAGAACGTGTTAAAT 58.528 39.130 0.00 0.00 37.29 1.40
293 294 3.850374 GCATTCCGCAAGAACGTGTTAAA 60.850 43.478 0.00 0.00 41.79 1.52
294 295 2.350007 GCATTCCGCAAGAACGTGTTAA 60.350 45.455 0.00 0.00 41.79 2.01
295 296 1.195900 GCATTCCGCAAGAACGTGTTA 59.804 47.619 0.00 0.00 41.79 2.41
296 297 0.040425 GCATTCCGCAAGAACGTGTT 60.040 50.000 0.00 0.00 41.79 3.32
297 298 1.574428 GCATTCCGCAAGAACGTGT 59.426 52.632 0.00 0.00 41.79 4.49
298 299 4.440214 GCATTCCGCAAGAACGTG 57.560 55.556 0.00 0.00 41.79 4.49
304 305 7.616704 TGGAAACATGTATGCATTCCGCAAG 62.617 44.000 17.39 0.00 46.68 4.01
305 306 5.881500 TGGAAACATGTATGCATTCCGCAA 61.882 41.667 17.39 2.43 46.68 4.85
307 308 2.098934 TGGAAACATGTATGCATTCCGC 59.901 45.455 17.39 0.00 44.03 5.54
322 323 6.590234 AATCTGAAAAGGGTACATGGAAAC 57.410 37.500 0.00 0.00 0.00 2.78
323 324 7.610580 AAAATCTGAAAAGGGTACATGGAAA 57.389 32.000 0.00 0.00 0.00 3.13
324 325 7.610580 AAAAATCTGAAAAGGGTACATGGAA 57.389 32.000 0.00 0.00 0.00 3.53
371 372 6.325919 AGCTCGGTATTTTGAAAACATCAA 57.674 33.333 0.00 0.00 46.22 2.57
372 373 5.106317 GGAGCTCGGTATTTTGAAAACATCA 60.106 40.000 7.83 0.00 35.85 3.07
373 374 5.123979 AGGAGCTCGGTATTTTGAAAACATC 59.876 40.000 7.83 0.00 0.00 3.06
374 375 5.010282 AGGAGCTCGGTATTTTGAAAACAT 58.990 37.500 7.83 0.00 0.00 2.71
375 376 4.394729 AGGAGCTCGGTATTTTGAAAACA 58.605 39.130 7.83 0.00 0.00 2.83
376 377 4.971008 GAGGAGCTCGGTATTTTGAAAAC 58.029 43.478 7.83 0.00 0.00 2.43
393 394 3.144193 AAGGCCGAGCTCGAGGAG 61.144 66.667 36.59 20.69 43.02 3.69
394 395 3.452786 CAAGGCCGAGCTCGAGGA 61.453 66.667 36.59 0.00 43.02 3.71
395 396 2.507110 TTTCAAGGCCGAGCTCGAGG 62.507 60.000 36.59 21.81 43.02 4.63
396 397 0.670546 TTTTCAAGGCCGAGCTCGAG 60.671 55.000 36.59 25.75 43.02 4.04
397 398 0.250124 TTTTTCAAGGCCGAGCTCGA 60.250 50.000 36.59 13.55 43.02 4.04
398 399 0.804989 ATTTTTCAAGGCCGAGCTCG 59.195 50.000 29.06 29.06 39.44 5.03
399 400 1.133216 GGATTTTTCAAGGCCGAGCTC 59.867 52.381 2.73 2.73 0.00 4.09
400 401 1.177401 GGATTTTTCAAGGCCGAGCT 58.823 50.000 0.00 0.00 0.00 4.09
401 402 0.179163 CGGATTTTTCAAGGCCGAGC 60.179 55.000 0.00 0.00 44.43 5.03
402 403 0.179163 GCGGATTTTTCAAGGCCGAG 60.179 55.000 0.00 0.00 44.43 4.63
403 404 0.891449 TGCGGATTTTTCAAGGCCGA 60.891 50.000 0.00 0.00 44.43 5.54
404 405 0.732538 GTGCGGATTTTTCAAGGCCG 60.733 55.000 0.00 0.00 44.47 6.13
405 406 0.603065 AGTGCGGATTTTTCAAGGCC 59.397 50.000 0.00 0.00 0.00 5.19
406 407 1.541588 AGAGTGCGGATTTTTCAAGGC 59.458 47.619 0.00 0.00 0.00 4.35
407 408 2.669391 GCAGAGTGCGGATTTTTCAAGG 60.669 50.000 0.00 0.00 31.71 3.61
408 409 2.589014 GCAGAGTGCGGATTTTTCAAG 58.411 47.619 0.00 0.00 31.71 3.02
409 410 1.269448 GGCAGAGTGCGGATTTTTCAA 59.731 47.619 0.00 0.00 46.21 2.69
410 411 0.881118 GGCAGAGTGCGGATTTTTCA 59.119 50.000 0.00 0.00 46.21 2.69
411 412 0.881118 TGGCAGAGTGCGGATTTTTC 59.119 50.000 0.00 0.00 46.21 2.29
412 413 1.203052 CATGGCAGAGTGCGGATTTTT 59.797 47.619 0.00 0.00 46.21 1.94
413 414 0.813184 CATGGCAGAGTGCGGATTTT 59.187 50.000 0.00 0.00 46.21 1.82
414 415 0.322816 ACATGGCAGAGTGCGGATTT 60.323 50.000 0.00 0.00 46.21 2.17
415 416 0.541392 TACATGGCAGAGTGCGGATT 59.459 50.000 0.00 0.00 46.21 3.01
416 417 0.179073 GTACATGGCAGAGTGCGGAT 60.179 55.000 0.00 0.00 46.21 4.18
417 418 1.218047 GTACATGGCAGAGTGCGGA 59.782 57.895 0.00 0.00 46.21 5.54
418 419 0.807667 GAGTACATGGCAGAGTGCGG 60.808 60.000 0.00 0.00 46.21 5.69
419 420 0.807667 GGAGTACATGGCAGAGTGCG 60.808 60.000 0.00 0.00 46.21 5.34
420 421 0.462759 GGGAGTACATGGCAGAGTGC 60.463 60.000 0.00 4.50 44.08 4.40
421 422 0.179000 GGGGAGTACATGGCAGAGTG 59.821 60.000 0.00 0.00 0.00 3.51
422 423 0.043334 AGGGGAGTACATGGCAGAGT 59.957 55.000 0.00 0.00 0.00 3.24
423 424 0.755686 GAGGGGAGTACATGGCAGAG 59.244 60.000 0.00 0.00 0.00 3.35
424 425 1.043116 CGAGGGGAGTACATGGCAGA 61.043 60.000 0.00 0.00 0.00 4.26
425 426 1.330655 ACGAGGGGAGTACATGGCAG 61.331 60.000 0.00 0.00 0.00 4.85
426 427 0.907704 AACGAGGGGAGTACATGGCA 60.908 55.000 0.00 0.00 0.00 4.92
427 428 0.179081 GAACGAGGGGAGTACATGGC 60.179 60.000 0.00 0.00 0.00 4.40
428 429 0.464452 GGAACGAGGGGAGTACATGG 59.536 60.000 0.00 0.00 0.00 3.66
429 430 1.191535 TGGAACGAGGGGAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
430 431 2.176247 ATGGAACGAGGGGAGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
431 432 2.832643 TATGGAACGAGGGGAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
432 433 5.997384 ATATTATGGAACGAGGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
433 434 7.472741 TCTTATATTATGGAACGAGGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
434 435 6.320518 TCTTATATTATGGAACGAGGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
435 436 6.628398 GCTCTTATATTATGGAACGAGGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
436 437 5.187186 GCTCTTATATTATGGAACGAGGGGA 59.813 44.000 0.00 0.00 0.00 4.81
437 438 5.420409 GCTCTTATATTATGGAACGAGGGG 58.580 45.833 0.00 0.00 0.00 4.79
438 439 5.103000 CGCTCTTATATTATGGAACGAGGG 58.897 45.833 0.00 0.00 0.00 4.30
439 440 5.710984 ACGCTCTTATATTATGGAACGAGG 58.289 41.667 0.00 0.00 0.00 4.63
440 441 7.639162 AAACGCTCTTATATTATGGAACGAG 57.361 36.000 0.00 0.00 0.00 4.18
441 442 8.428186 AAAAACGCTCTTATATTATGGAACGA 57.572 30.769 0.00 0.00 0.00 3.85
484 485 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
485 486 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
486 487 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
487 488 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
488 489 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
489 490 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
490 491 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
491 492 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
492 493 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
493 494 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
494 495 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
495 496 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
496 497 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
497 498 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
498 499 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
499 500 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
500 501 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
501 502 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
502 503 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
503 504 0.324091 TCAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
504 505 1.777941 ATCAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
505 506 3.447944 AGAAATCAACTACTCCCTCCGTC 59.552 47.826 0.00 0.00 0.00 4.79
506 507 3.195825 CAGAAATCAACTACTCCCTCCGT 59.804 47.826 0.00 0.00 0.00 4.69
507 508 3.430929 CCAGAAATCAACTACTCCCTCCG 60.431 52.174 0.00 0.00 0.00 4.63
508 509 3.519913 ACCAGAAATCAACTACTCCCTCC 59.480 47.826 0.00 0.00 0.00 4.30
509 510 4.020128 ACACCAGAAATCAACTACTCCCTC 60.020 45.833 0.00 0.00 0.00 4.30
510 511 3.910627 ACACCAGAAATCAACTACTCCCT 59.089 43.478 0.00 0.00 0.00 4.20
511 512 4.287766 ACACCAGAAATCAACTACTCCC 57.712 45.455 0.00 0.00 0.00 4.30
512 513 4.863131 CGTACACCAGAAATCAACTACTCC 59.137 45.833 0.00 0.00 0.00 3.85
513 514 4.863131 CCGTACACCAGAAATCAACTACTC 59.137 45.833 0.00 0.00 0.00 2.59
514 515 4.525487 TCCGTACACCAGAAATCAACTACT 59.475 41.667 0.00 0.00 0.00 2.57
515 516 4.813027 TCCGTACACCAGAAATCAACTAC 58.187 43.478 0.00 0.00 0.00 2.73
516 517 5.471556 TTCCGTACACCAGAAATCAACTA 57.528 39.130 0.00 0.00 0.00 2.24
517 518 4.345859 TTCCGTACACCAGAAATCAACT 57.654 40.909 0.00 0.00 0.00 3.16
518 519 4.693566 TCATTCCGTACACCAGAAATCAAC 59.306 41.667 0.00 0.00 0.00 3.18
519 520 4.900684 TCATTCCGTACACCAGAAATCAA 58.099 39.130 0.00 0.00 0.00 2.57
520 521 4.545208 TCATTCCGTACACCAGAAATCA 57.455 40.909 0.00 0.00 0.00 2.57
521 522 6.513180 TCTATCATTCCGTACACCAGAAATC 58.487 40.000 0.00 0.00 0.00 2.17
522 523 6.479972 TCTATCATTCCGTACACCAGAAAT 57.520 37.500 0.00 0.00 0.00 2.17
523 524 5.925506 TCTATCATTCCGTACACCAGAAA 57.074 39.130 0.00 0.00 0.00 2.52
524 525 5.925506 TTCTATCATTCCGTACACCAGAA 57.074 39.130 0.00 0.00 0.00 3.02
525 526 6.323996 AGAATTCTATCATTCCGTACACCAGA 59.676 38.462 6.06 0.00 34.15 3.86
526 527 6.516718 AGAATTCTATCATTCCGTACACCAG 58.483 40.000 6.06 0.00 34.15 4.00
527 528 6.479972 AGAATTCTATCATTCCGTACACCA 57.520 37.500 6.06 0.00 34.15 4.17
528 529 7.254795 CCAAAGAATTCTATCATTCCGTACACC 60.255 40.741 8.75 0.00 34.15 4.16
529 530 7.280205 ACCAAAGAATTCTATCATTCCGTACAC 59.720 37.037 8.75 0.00 34.15 2.90
530 531 7.279981 CACCAAAGAATTCTATCATTCCGTACA 59.720 37.037 8.75 0.00 34.15 2.90
531 532 7.280205 ACACCAAAGAATTCTATCATTCCGTAC 59.720 37.037 8.75 0.00 34.15 3.67
532 533 7.335627 ACACCAAAGAATTCTATCATTCCGTA 58.664 34.615 8.75 0.00 34.15 4.02
533 534 6.180472 ACACCAAAGAATTCTATCATTCCGT 58.820 36.000 8.75 0.00 34.15 4.69
534 535 6.683974 ACACCAAAGAATTCTATCATTCCG 57.316 37.500 8.75 0.00 34.15 4.30
535 536 9.143631 CAAAACACCAAAGAATTCTATCATTCC 57.856 33.333 8.75 0.00 34.15 3.01
543 544 6.282930 CCATGTCAAAACACCAAAGAATTCT 58.717 36.000 0.88 0.88 38.48 2.40
544 545 5.466393 CCCATGTCAAAACACCAAAGAATTC 59.534 40.000 0.00 0.00 38.48 2.17
583 585 3.679389 ACAGAGATCACCATGTTTGACC 58.321 45.455 0.00 0.00 0.00 4.02
603 605 1.274728 AGCAGAGATGGACACACAGAC 59.725 52.381 0.00 0.00 0.00 3.51
621 623 1.816224 TGATTAACCGCCCAAAGAAGC 59.184 47.619 0.00 0.00 0.00 3.86
637 639 3.621268 CACCCGTAATCGTTCATGTGATT 59.379 43.478 12.68 12.68 38.34 2.57
682 684 4.056050 ACCGAGTTAATGTGACACAACTC 58.944 43.478 22.44 22.44 42.14 3.01
686 688 2.139917 GCACCGAGTTAATGTGACACA 58.860 47.619 11.41 11.41 31.66 3.72
688 690 2.535012 TGCACCGAGTTAATGTGACA 57.465 45.000 0.00 0.00 31.66 3.58
755 757 1.883084 GCGTATGAACTGAGCCCGG 60.883 63.158 0.00 0.00 0.00 5.73
773 775 1.133823 TGGGAATGGGATGGATTCGTG 60.134 52.381 0.00 0.00 31.59 4.35
776 783 3.225940 GAACTGGGAATGGGATGGATTC 58.774 50.000 0.00 0.00 0.00 2.52
831 838 1.700739 TGGCCTTATATAACCCACGGG 59.299 52.381 3.32 0.00 42.03 5.28
872 879 3.304928 GGAGCCTGAGATGTTTGTTTGTG 60.305 47.826 0.00 0.00 0.00 3.33
889 896 1.523938 GGTGATTAGCGGTGGAGCC 60.524 63.158 0.00 0.00 38.01 4.70
890 897 1.090052 GTGGTGATTAGCGGTGGAGC 61.090 60.000 0.00 0.00 37.41 4.70
897 904 2.159627 GTCTTGTTGGTGGTGATTAGCG 59.840 50.000 0.00 0.00 0.00 4.26
905 912 1.227853 GGCGAGTCTTGTTGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
906 913 0.535102 AAGGCGAGTCTTGTTGGTGG 60.535 55.000 0.00 0.00 0.00 4.61
934 942 1.829533 CGGGAATGGCATCCTTGGG 60.830 63.158 0.00 0.00 39.57 4.12
987 995 2.769621 TCCATGGATGCCGGAGCT 60.770 61.111 11.44 0.00 40.80 4.09
1230 1248 4.828925 GACGAGGAGCTGGCTGCC 62.829 72.222 12.87 12.87 44.23 4.85
1233 1251 3.444805 GACGACGAGGAGCTGGCT 61.445 66.667 0.00 0.00 0.00 4.75
1234 1252 4.838486 CGACGACGAGGAGCTGGC 62.838 72.222 0.00 0.00 42.66 4.85
1235 1253 4.180946 CCGACGACGAGGAGCTGG 62.181 72.222 9.28 0.00 42.66 4.85
1236 1254 4.180946 CCCGACGACGAGGAGCTG 62.181 72.222 9.28 0.00 42.66 4.24
1239 1257 2.513204 TAGCCCGACGACGAGGAG 60.513 66.667 9.28 6.87 42.66 3.69
1240 1258 2.821366 GTAGCCCGACGACGAGGA 60.821 66.667 9.28 0.00 42.66 3.71
1901 1965 1.077501 ATGGATGGACCTTGGTGCG 60.078 57.895 6.81 0.00 39.86 5.34
1902 1966 0.753111 GGATGGATGGACCTTGGTGC 60.753 60.000 4.29 4.29 39.86 5.01
1903 1967 0.625316 TGGATGGATGGACCTTGGTG 59.375 55.000 0.00 0.00 39.86 4.17
1904 1968 1.496429 GATGGATGGATGGACCTTGGT 59.504 52.381 0.00 0.00 39.86 3.67
1905 1969 1.202976 GGATGGATGGATGGACCTTGG 60.203 57.143 0.00 0.00 39.86 3.61
1918 1982 0.103228 TGGGATGGGATGGGATGGAT 60.103 55.000 0.00 0.00 0.00 3.41
1919 1983 0.103228 ATGGGATGGGATGGGATGGA 60.103 55.000 0.00 0.00 0.00 3.41
1920 1984 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
1921 1985 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
1922 1986 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
1923 1987 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
1924 1988 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
1925 1989 0.788383 AATGGGATGGGATGGGATGG 59.212 55.000 0.00 0.00 0.00 3.51
1926 1990 1.430075 TGAATGGGATGGGATGGGATG 59.570 52.381 0.00 0.00 0.00 3.51
1974 2041 3.057547 CTCGGCTCCGACAGACAGG 62.058 68.421 6.95 0.00 44.01 4.00
2073 2143 1.818363 GGAGACGCCCGATTTTCCC 60.818 63.158 0.00 0.00 0.00 3.97
2109 2179 9.122779 CAGTTGCTAGTACTAGTAATTAGGAGT 57.877 37.037 28.77 11.67 39.34 3.85
2112 2182 7.713750 TGCAGTTGCTAGTACTAGTAATTAGG 58.286 38.462 28.77 20.41 39.34 2.69
2164 2234 0.466372 TGTGATGCCAAAACCCACGA 60.466 50.000 0.00 0.00 0.00 4.35
2165 2235 0.602562 ATGTGATGCCAAAACCCACG 59.397 50.000 0.00 0.00 0.00 4.94
2166 2236 1.402720 CGATGTGATGCCAAAACCCAC 60.403 52.381 0.00 0.00 0.00 4.61
2167 2237 0.887247 CGATGTGATGCCAAAACCCA 59.113 50.000 0.00 0.00 0.00 4.51
2168 2238 0.458370 GCGATGTGATGCCAAAACCC 60.458 55.000 0.00 0.00 0.00 4.11
2169 2239 0.243365 TGCGATGTGATGCCAAAACC 59.757 50.000 0.00 0.00 0.00 3.27
2174 2244 1.143620 TCGATGCGATGTGATGCCA 59.856 52.632 0.00 0.00 0.00 4.92
2175 2245 1.153597 TGTCGATGCGATGTGATGCC 61.154 55.000 0.00 0.00 38.42 4.40
2197 2268 2.213499 GGGGATCAATCAGCGTTACAG 58.787 52.381 0.00 0.00 0.00 2.74
2203 2274 1.532868 GAATTCGGGGATCAATCAGCG 59.467 52.381 0.00 0.00 0.00 5.18
2210 2281 0.617935 TGCTGTGAATTCGGGGATCA 59.382 50.000 0.04 0.00 0.00 2.92
2211 2282 1.876156 GATGCTGTGAATTCGGGGATC 59.124 52.381 0.04 6.02 0.00 3.36
2212 2283 1.492176 AGATGCTGTGAATTCGGGGAT 59.508 47.619 0.04 0.26 0.00 3.85
2213 2284 0.911769 AGATGCTGTGAATTCGGGGA 59.088 50.000 0.04 0.00 0.00 4.81
2225 2296 3.599730 TGTAAGACTGTGGAGATGCTG 57.400 47.619 0.00 0.00 0.00 4.41
2252 2323 5.086104 AGAACGCACACTGGAATTAGTAT 57.914 39.130 0.00 0.00 0.00 2.12
2254 2325 3.402628 AGAACGCACACTGGAATTAGT 57.597 42.857 0.00 0.00 0.00 2.24
2255 2326 3.745975 TCAAGAACGCACACTGGAATTAG 59.254 43.478 0.00 0.00 0.00 1.73
2256 2327 3.734463 TCAAGAACGCACACTGGAATTA 58.266 40.909 0.00 0.00 0.00 1.40
2257 2328 2.549754 CTCAAGAACGCACACTGGAATT 59.450 45.455 0.00 0.00 0.00 2.17
2261 2332 1.159713 TGCTCAAGAACGCACACTGG 61.160 55.000 0.00 0.00 0.00 4.00
2268 2339 1.081840 GGTGCTTGCTCAAGAACGC 60.082 57.895 13.33 4.15 45.86 4.84
2280 2351 0.250513 GGAGGAAGACGATGGTGCTT 59.749 55.000 0.00 0.00 0.00 3.91
2289 2360 1.181786 AGAAGCAGAGGAGGAAGACG 58.818 55.000 0.00 0.00 0.00 4.18
2292 2363 1.736612 GCAAGAAGCAGAGGAGGAAG 58.263 55.000 0.00 0.00 44.79 3.46
2293 2364 3.944476 GCAAGAAGCAGAGGAGGAA 57.056 52.632 0.00 0.00 44.79 3.36
2304 2379 1.517242 ACGGAAAGCAGAGCAAGAAG 58.483 50.000 0.00 0.00 0.00 2.85
2311 2386 1.801178 GGACTGAAACGGAAAGCAGAG 59.199 52.381 0.00 0.00 32.86 3.35
2313 2388 0.875059 GGGACTGAAACGGAAAGCAG 59.125 55.000 0.00 0.00 34.65 4.24
2315 2390 1.241990 GGGGGACTGAAACGGAAAGC 61.242 60.000 0.00 0.00 0.00 3.51
2316 2391 0.109723 TGGGGGACTGAAACGGAAAG 59.890 55.000 0.00 0.00 0.00 2.62
2319 2394 2.890766 GCTGGGGGACTGAAACGGA 61.891 63.158 0.00 0.00 0.00 4.69
2320 2395 2.359975 GCTGGGGGACTGAAACGG 60.360 66.667 0.00 0.00 0.00 4.44
2321 2396 2.359975 GGCTGGGGGACTGAAACG 60.360 66.667 0.00 0.00 0.00 3.60
2322 2397 1.002011 GAGGCTGGGGGACTGAAAC 60.002 63.158 0.00 0.00 30.21 2.78
2323 2398 1.463214 TGAGGCTGGGGGACTGAAA 60.463 57.895 0.00 0.00 30.21 2.69
2324 2399 2.206900 TGAGGCTGGGGGACTGAA 59.793 61.111 0.00 0.00 30.21 3.02
2325 2400 2.607750 GTGAGGCTGGGGGACTGA 60.608 66.667 0.00 0.00 30.21 3.41
2326 2401 2.608988 AGTGAGGCTGGGGGACTG 60.609 66.667 0.00 0.00 30.21 3.51
2327 2402 2.284995 GAGTGAGGCTGGGGGACT 60.285 66.667 0.00 0.00 34.86 3.85
2328 2403 3.403558 GGAGTGAGGCTGGGGGAC 61.404 72.222 0.00 0.00 0.00 4.46
2329 2404 3.940480 TGGAGTGAGGCTGGGGGA 61.940 66.667 0.00 0.00 0.00 4.81
2356 2431 1.299773 CCTCCTCGAGCATCTTCGC 60.300 63.158 6.99 0.00 40.29 4.70
2357 2432 0.741326 TTCCTCCTCGAGCATCTTCG 59.259 55.000 6.99 0.00 41.79 3.79
2389 2464 7.554118 TCAGAAAATCAAGATGAACCTACCATC 59.446 37.037 0.00 0.00 40.40 3.51
2455 2567 3.201290 GCACATGTGTCTATCCCTGAAG 58.799 50.000 26.01 0.00 0.00 3.02
2456 2568 2.571202 TGCACATGTGTCTATCCCTGAA 59.429 45.455 26.01 0.00 0.00 3.02
2457 2569 2.169144 CTGCACATGTGTCTATCCCTGA 59.831 50.000 26.01 1.12 0.00 3.86
2458 2570 2.558378 CTGCACATGTGTCTATCCCTG 58.442 52.381 26.01 8.48 0.00 4.45
2506 2618 1.350193 CGTGGAGCATGTGTCTACAC 58.650 55.000 6.29 6.29 46.59 2.90
2507 2619 0.246360 CCGTGGAGCATGTGTCTACA 59.754 55.000 12.11 0.00 41.89 2.74
2508 2620 1.084370 GCCGTGGAGCATGTGTCTAC 61.084 60.000 0.00 0.00 0.00 2.59
2509 2621 1.218047 GCCGTGGAGCATGTGTCTA 59.782 57.895 0.00 0.00 0.00 2.59
2510 2622 2.046892 GCCGTGGAGCATGTGTCT 60.047 61.111 0.00 0.00 0.00 3.41
2511 2623 3.127533 GGCCGTGGAGCATGTGTC 61.128 66.667 0.00 0.00 0.00 3.67
2636 2761 6.240894 AGTGAGTAAATGAAGCTTTGGATCA 58.759 36.000 0.00 0.00 0.00 2.92
2686 2815 3.008375 ACTGTAGTCCGTACCTCTGTGTA 59.992 47.826 0.00 0.00 0.00 2.90
2687 2816 2.224719 ACTGTAGTCCGTACCTCTGTGT 60.225 50.000 0.00 0.00 0.00 3.72
2688 2817 2.161808 CACTGTAGTCCGTACCTCTGTG 59.838 54.545 0.00 0.00 0.00 3.66
2689 2818 2.039480 TCACTGTAGTCCGTACCTCTGT 59.961 50.000 0.00 0.00 0.00 3.41
2690 2819 2.708051 TCACTGTAGTCCGTACCTCTG 58.292 52.381 0.00 0.00 0.00 3.35
2691 2820 3.430042 TTCACTGTAGTCCGTACCTCT 57.570 47.619 0.00 0.00 0.00 3.69
2692 2821 4.157289 TCATTTCACTGTAGTCCGTACCTC 59.843 45.833 0.00 0.00 0.00 3.85
2693 2822 4.084287 TCATTTCACTGTAGTCCGTACCT 58.916 43.478 0.00 0.00 0.00 3.08
2694 2823 4.445452 TCATTTCACTGTAGTCCGTACC 57.555 45.455 0.00 0.00 0.00 3.34
2698 2827 3.553511 GCAGATCATTTCACTGTAGTCCG 59.446 47.826 0.00 0.00 34.60 4.79
2713 2852 3.710165 AGTCATTCATCCAGAGCAGATCA 59.290 43.478 0.00 0.00 0.00 2.92
2715 2854 3.181453 CCAGTCATTCATCCAGAGCAGAT 60.181 47.826 0.00 0.00 0.00 2.90
2741 2888 1.912371 CTTTCGAGCAGCGTTTCCCC 61.912 60.000 0.00 0.00 41.80 4.81
2792 2939 2.671396 AGAAAATATTTGCTCGCGACGT 59.329 40.909 3.71 0.00 0.00 4.34
2801 2948 6.358822 GCGGGTACGAATAAGAAAATATTTGC 59.641 38.462 0.39 0.00 44.60 3.68
2813 2960 3.936585 GTACGGCGGGTACGAATAA 57.063 52.632 13.24 0.00 41.91 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.