Multiple sequence alignment - TraesCS1B01G441000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G441000 chr1B 100.000 3829 0 0 1 3829 662070696 662066868 0.000000e+00 7071
1 TraesCS1B01G441000 chr3B 96.669 2432 62 9 798 3211 232605183 232602753 0.000000e+00 4024
2 TraesCS1B01G441000 chr3B 98.123 746 12 2 1 744 232605937 232605192 0.000000e+00 1299
3 TraesCS1B01G441000 chr3B 95.330 621 25 3 3210 3829 232564929 232564312 0.000000e+00 983
4 TraesCS1B01G441000 chr3B 74.845 644 144 17 2197 2831 42340890 42340256 3.770000e-70 276
5 TraesCS1B01G441000 chr5A 94.330 2434 115 9 796 3211 570186813 570189241 0.000000e+00 3709
6 TraesCS1B01G441000 chr5A 94.737 760 31 8 1 754 570186063 570186819 0.000000e+00 1173
7 TraesCS1B01G441000 chr5A 91.304 621 51 3 3210 3829 570226889 570227507 0.000000e+00 845
8 TraesCS1B01G441000 chr2B 94.244 886 29 10 1 881 11910781 11909913 0.000000e+00 1334
9 TraesCS1B01G441000 chr2B 85.666 293 42 0 1248 1540 259762944 259762652 3.720000e-80 309
10 TraesCS1B01G441000 chr2B 72.273 880 211 30 855 1724 794922418 794923274 3.820000e-60 243
11 TraesCS1B01G441000 chr2B 71.591 880 216 30 855 1724 794916440 794917295 3.880000e-50 209
12 TraesCS1B01G441000 chrUn 82.660 940 138 16 798 1716 24277509 24276574 0.000000e+00 809
13 TraesCS1B01G441000 chr7A 81.915 940 145 15 798 1716 675508182 675507247 0.000000e+00 771
14 TraesCS1B01G441000 chr7A 86.575 365 47 2 800 1163 102077444 102077081 5.960000e-108 401
15 TraesCS1B01G441000 chr7A 81.041 269 51 0 2197 2465 522333129 522332861 8.330000e-52 215
16 TraesCS1B01G441000 chr2D 81.809 940 142 20 798 1716 431389786 431390717 0.000000e+00 761
17 TraesCS1B01G441000 chr7D 85.393 445 63 2 1273 1716 86060105 86060548 9.690000e-126 460
18 TraesCS1B01G441000 chr1D 76.000 650 138 17 2197 2838 384914785 384914146 1.720000e-83 320
19 TraesCS1B01G441000 chr5D 75.767 652 143 15 2194 2838 375061089 375061732 7.980000e-82 315
20 TraesCS1B01G441000 chr6B 74.516 620 137 20 2197 2799 287142746 287142131 2.280000e-62 250
21 TraesCS1B01G441000 chr6B 73.753 461 99 19 1250 1699 26739866 26740315 1.100000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G441000 chr1B 662066868 662070696 3828 True 7071.0 7071 100.0000 1 3829 1 chr1B.!!$R1 3828
1 TraesCS1B01G441000 chr3B 232602753 232605937 3184 True 2661.5 4024 97.3960 1 3211 2 chr3B.!!$R3 3210
2 TraesCS1B01G441000 chr3B 232564312 232564929 617 True 983.0 983 95.3300 3210 3829 1 chr3B.!!$R2 619
3 TraesCS1B01G441000 chr3B 42340256 42340890 634 True 276.0 276 74.8450 2197 2831 1 chr3B.!!$R1 634
4 TraesCS1B01G441000 chr5A 570186063 570189241 3178 False 2441.0 3709 94.5335 1 3211 2 chr5A.!!$F2 3210
5 TraesCS1B01G441000 chr5A 570226889 570227507 618 False 845.0 845 91.3040 3210 3829 1 chr5A.!!$F1 619
6 TraesCS1B01G441000 chr2B 11909913 11910781 868 True 1334.0 1334 94.2440 1 881 1 chr2B.!!$R1 880
7 TraesCS1B01G441000 chr2B 794922418 794923274 856 False 243.0 243 72.2730 855 1724 1 chr2B.!!$F2 869
8 TraesCS1B01G441000 chr2B 794916440 794917295 855 False 209.0 209 71.5910 855 1724 1 chr2B.!!$F1 869
9 TraesCS1B01G441000 chrUn 24276574 24277509 935 True 809.0 809 82.6600 798 1716 1 chrUn.!!$R1 918
10 TraesCS1B01G441000 chr7A 675507247 675508182 935 True 771.0 771 81.9150 798 1716 1 chr7A.!!$R3 918
11 TraesCS1B01G441000 chr2D 431389786 431390717 931 False 761.0 761 81.8090 798 1716 1 chr2D.!!$F1 918
12 TraesCS1B01G441000 chr1D 384914146 384914785 639 True 320.0 320 76.0000 2197 2838 1 chr1D.!!$R1 641
13 TraesCS1B01G441000 chr5D 375061089 375061732 643 False 315.0 315 75.7670 2194 2838 1 chr5D.!!$F1 644
14 TraesCS1B01G441000 chr6B 287142131 287142746 615 True 250.0 250 74.5160 2197 2799 1 chr6B.!!$R1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 552 1.434188 AGATGCCCATAATCACCCGA 58.566 50.000 0.0 0.0 0.00 5.14 F
780 788 1.811359 ACCTCTTCGGTTCAGTAGTCG 59.189 52.381 0.0 0.0 46.37 4.18 F
781 789 1.811359 CCTCTTCGGTTCAGTAGTCGT 59.189 52.381 0.0 0.0 0.00 4.34 F
2189 2237 2.073816 GTTATGGTGTTGGTCCGTCTG 58.926 52.381 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2271 0.171231 TCTCGTGCATCTCTTGTCCG 59.829 55.000 0.00 0.0 0.00 4.79 R
2493 2555 0.320247 AACTCGAGTGCCTCTTGCTG 60.320 55.000 20.85 0.0 42.00 4.41 R
2607 2669 1.081840 GAGCTTTGTCACGGCTTGC 60.082 57.895 0.00 0.0 36.37 4.01 R
3801 3865 0.390124 CCCCGCGTATAGGCTTGTAA 59.610 55.000 14.94 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 6.073447 TGAACCCAAATAGGAAATCAGCTA 57.927 37.500 0.00 0.00 41.22 3.32
107 109 6.435164 ACCCAAATAGGAAATCAGCTATTGT 58.565 36.000 0.00 0.00 41.22 2.71
148 150 9.162960 CTTATGCTGATAAGAAGGATGGCCCTA 62.163 44.444 0.00 0.00 42.43 3.53
327 330 2.742530 GCGGTATGTAATTCGGAACCCA 60.743 50.000 0.00 0.00 0.00 4.51
453 459 1.668151 GGAAAACAGCCGCTCGTCT 60.668 57.895 0.00 0.00 0.00 4.18
544 552 1.434188 AGATGCCCATAATCACCCGA 58.566 50.000 0.00 0.00 0.00 5.14
744 752 7.963532 TGAAGACACTCTGTAGGAAACTAAAT 58.036 34.615 0.00 0.00 46.54 1.40
747 755 8.880991 AGACACTCTGTAGGAAACTAAATAGA 57.119 34.615 0.00 0.00 46.54 1.98
748 756 8.962679 AGACACTCTGTAGGAAACTAAATAGAG 58.037 37.037 0.00 0.00 46.54 2.43
753 761 8.880991 TCTGTAGGAAACTAAATAGAGTGTCT 57.119 34.615 0.00 0.00 46.54 3.41
754 762 9.310449 TCTGTAGGAAACTAAATAGAGTGTCTT 57.690 33.333 0.00 0.00 46.54 3.01
755 763 9.575783 CTGTAGGAAACTAAATAGAGTGTCTTC 57.424 37.037 0.00 0.00 46.54 2.87
756 764 9.085645 TGTAGGAAACTAAATAGAGTGTCTTCA 57.914 33.333 0.00 0.00 46.54 3.02
757 765 9.924650 GTAGGAAACTAAATAGAGTGTCTTCAA 57.075 33.333 0.00 0.00 46.54 2.69
758 766 8.834749 AGGAAACTAAATAGAGTGTCTTCAAC 57.165 34.615 0.00 0.00 40.61 3.18
759 767 7.599245 AGGAAACTAAATAGAGTGTCTTCAACG 59.401 37.037 0.00 0.00 40.61 4.10
760 768 7.597743 GGAAACTAAATAGAGTGTCTTCAACGA 59.402 37.037 0.00 0.00 34.53 3.85
761 769 7.870588 AACTAAATAGAGTGTCTTCAACGAC 57.129 36.000 0.00 0.00 34.52 4.34
762 770 6.388278 ACTAAATAGAGTGTCTTCAACGACC 58.612 40.000 0.00 0.00 32.97 4.79
763 771 5.470047 AAATAGAGTGTCTTCAACGACCT 57.530 39.130 0.00 0.00 32.97 3.85
764 772 4.705337 ATAGAGTGTCTTCAACGACCTC 57.295 45.455 0.00 0.00 34.36 3.85
765 773 2.588620 AGAGTGTCTTCAACGACCTCT 58.411 47.619 0.00 0.00 37.05 3.69
767 775 3.004944 AGAGTGTCTTCAACGACCTCTTC 59.995 47.826 0.00 0.00 37.84 2.87
780 788 1.811359 ACCTCTTCGGTTCAGTAGTCG 59.189 52.381 0.00 0.00 46.37 4.18
781 789 1.811359 CCTCTTCGGTTCAGTAGTCGT 59.189 52.381 0.00 0.00 0.00 4.34
782 790 2.228343 CCTCTTCGGTTCAGTAGTCGTT 59.772 50.000 0.00 0.00 0.00 3.85
783 791 3.438087 CCTCTTCGGTTCAGTAGTCGTTA 59.562 47.826 0.00 0.00 0.00 3.18
784 792 4.437121 CCTCTTCGGTTCAGTAGTCGTTAG 60.437 50.000 0.00 0.00 0.00 2.34
785 793 3.438087 TCTTCGGTTCAGTAGTCGTTAGG 59.562 47.826 0.00 0.00 0.00 2.69
786 794 3.057969 TCGGTTCAGTAGTCGTTAGGA 57.942 47.619 0.00 0.00 0.00 2.94
787 795 3.411446 TCGGTTCAGTAGTCGTTAGGAA 58.589 45.455 0.00 0.00 0.00 3.36
788 796 4.012374 TCGGTTCAGTAGTCGTTAGGAAT 58.988 43.478 0.00 0.00 0.00 3.01
789 797 4.095483 TCGGTTCAGTAGTCGTTAGGAATC 59.905 45.833 0.00 0.00 0.00 2.52
790 798 4.096081 CGGTTCAGTAGTCGTTAGGAATCT 59.904 45.833 0.00 0.00 0.00 2.40
791 799 5.580661 GGTTCAGTAGTCGTTAGGAATCTC 58.419 45.833 0.00 0.00 0.00 2.75
792 800 5.357596 GGTTCAGTAGTCGTTAGGAATCTCT 59.642 44.000 0.00 0.00 0.00 3.10
793 801 6.127675 GGTTCAGTAGTCGTTAGGAATCTCTT 60.128 42.308 0.00 0.00 0.00 2.85
794 802 6.438259 TCAGTAGTCGTTAGGAATCTCTTG 57.562 41.667 0.00 0.00 0.00 3.02
812 820 4.096681 TCTTGGTAGTCTGACATGGATGT 58.903 43.478 10.88 0.00 45.16 3.06
937 945 5.104735 TGGGTAACAAGCAAAGGTTTTGATT 60.105 36.000 5.77 2.70 39.74 2.57
1553 1584 5.460646 CATATTTCAGAGGCGTGTTTTGTT 58.539 37.500 0.00 0.00 0.00 2.83
1653 1684 4.209080 GCACCTTTTCTTGAAACAATTCGG 59.791 41.667 0.00 0.00 38.46 4.30
1828 1859 2.898729 AGTGGTGTCTCACTCTTGTG 57.101 50.000 0.06 0.00 43.82 3.33
1829 1860 2.111384 AGTGGTGTCTCACTCTTGTGT 58.889 47.619 0.06 0.00 43.82 3.72
1882 1929 5.673337 TGTTCGAGAAATTTGGTGAAGAG 57.327 39.130 0.00 0.00 0.00 2.85
1949 1996 8.843733 CGAGAAAGATTTACAAATCAACACATG 58.156 33.333 15.20 0.00 45.59 3.21
2181 2229 8.581578 AGTTTTTAATGTAGGTTATGGTGTTGG 58.418 33.333 0.00 0.00 0.00 3.77
2189 2237 2.073816 GTTATGGTGTTGGTCCGTCTG 58.926 52.381 0.00 0.00 0.00 3.51
2223 2271 6.257193 ACCCGAGAAACATATAATGAAACGAC 59.743 38.462 0.00 0.00 0.00 4.34
2493 2555 4.574599 AATCAGTTGCTTGTTCAGAACC 57.425 40.909 10.93 0.00 0.00 3.62
2607 2669 1.108132 GCCGAGGGGTAGACCTACAG 61.108 65.000 9.15 0.00 42.10 2.74
2948 3011 7.311364 ACGTTAGCGGTGATGTAATTTAATT 57.689 32.000 1.99 0.00 43.45 1.40
3332 3395 2.982130 TTCTGCTCCCGGAGAAGC 59.018 61.111 19.33 9.95 41.83 3.86
3419 3482 9.803507 AATTGTATGTATCTGATGAACATGGAT 57.196 29.630 13.70 5.08 35.54 3.41
3447 3510 5.929415 GGCTTTAGGAGACATACTATGCTTC 59.071 44.000 0.00 0.00 31.73 3.86
3453 3516 4.519730 GGAGACATACTATGCTTCGGTAGT 59.480 45.833 0.00 0.00 35.47 2.73
3587 3650 5.529060 TGTTTTTGTTGCACAAACTTCCTTT 59.471 32.000 12.14 0.00 46.53 3.11
3603 3666 0.307760 CTTTGGACGGCACACACTTC 59.692 55.000 0.00 0.00 0.00 3.01
3643 3706 0.041312 CTCCGCACCTGTTGTTTTCG 60.041 55.000 0.00 0.00 0.00 3.46
3687 3751 9.011407 GTTTTGATGTAGTACGACTGAGATAAG 57.989 37.037 7.66 0.00 0.00 1.73
3772 3836 6.403092 CGGGGCAAAATTCATTGTAATTTTCC 60.403 38.462 12.54 14.24 43.67 3.13
3801 3865 7.450014 ACCATATTCTTGATCGACTCATAGTCT 59.550 37.037 5.59 0.00 42.92 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 0.652592 GCGCGCAGAGACAATACAAT 59.347 50.000 29.10 0.00 0.00 2.71
107 109 2.127251 CATAAGCGCGCAGAGACAATA 58.873 47.619 35.10 12.42 0.00 1.90
327 330 7.385205 CCTAACGCTCTAGCATAATAAATGTGT 59.615 37.037 2.44 0.00 42.21 3.72
453 459 2.668212 GCGTTGCAGCCACACCTA 60.668 61.111 0.00 0.00 0.00 3.08
544 552 0.179032 TGCCCACACGTCAAAGACAT 60.179 50.000 0.00 0.00 32.09 3.06
744 752 3.752665 AGAGGTCGTTGAAGACACTCTA 58.247 45.455 12.83 0.00 41.97 2.43
747 755 2.287668 CGAAGAGGTCGTTGAAGACACT 60.288 50.000 0.00 0.00 45.09 3.55
748 756 2.052157 CGAAGAGGTCGTTGAAGACAC 58.948 52.381 0.00 0.00 45.09 3.67
749 757 2.417339 CGAAGAGGTCGTTGAAGACA 57.583 50.000 0.00 0.00 45.09 3.41
762 770 3.555917 AACGACTACTGAACCGAAGAG 57.444 47.619 0.00 0.00 0.00 2.85
763 771 3.438087 CCTAACGACTACTGAACCGAAGA 59.562 47.826 0.00 0.00 0.00 2.87
764 772 3.438087 TCCTAACGACTACTGAACCGAAG 59.562 47.826 0.00 0.00 0.00 3.79
765 773 3.411446 TCCTAACGACTACTGAACCGAA 58.589 45.455 0.00 0.00 0.00 4.30
767 775 3.837213 TTCCTAACGACTACTGAACCG 57.163 47.619 0.00 0.00 0.00 4.44
768 776 5.357596 AGAGATTCCTAACGACTACTGAACC 59.642 44.000 0.00 0.00 0.00 3.62
769 777 6.439675 AGAGATTCCTAACGACTACTGAAC 57.560 41.667 0.00 0.00 0.00 3.18
770 778 6.127703 CCAAGAGATTCCTAACGACTACTGAA 60.128 42.308 0.00 0.00 0.00 3.02
772 780 5.125739 ACCAAGAGATTCCTAACGACTACTG 59.874 44.000 0.00 0.00 0.00 2.74
774 782 5.579564 ACCAAGAGATTCCTAACGACTAC 57.420 43.478 0.00 0.00 0.00 2.73
775 783 6.421485 ACTACCAAGAGATTCCTAACGACTA 58.579 40.000 0.00 0.00 0.00 2.59
778 786 5.357314 CAGACTACCAAGAGATTCCTAACGA 59.643 44.000 0.00 0.00 0.00 3.85
779 787 5.357314 TCAGACTACCAAGAGATTCCTAACG 59.643 44.000 0.00 0.00 0.00 3.18
780 788 6.153000 TGTCAGACTACCAAGAGATTCCTAAC 59.847 42.308 1.31 0.00 0.00 2.34
781 789 6.253758 TGTCAGACTACCAAGAGATTCCTAA 58.746 40.000 1.31 0.00 0.00 2.69
782 790 5.827756 TGTCAGACTACCAAGAGATTCCTA 58.172 41.667 1.31 0.00 0.00 2.94
783 791 4.678256 TGTCAGACTACCAAGAGATTCCT 58.322 43.478 1.31 0.00 0.00 3.36
784 792 5.355596 CATGTCAGACTACCAAGAGATTCC 58.644 45.833 1.31 0.00 0.00 3.01
785 793 5.127845 TCCATGTCAGACTACCAAGAGATTC 59.872 44.000 1.31 0.00 0.00 2.52
786 794 5.026121 TCCATGTCAGACTACCAAGAGATT 58.974 41.667 1.31 0.00 0.00 2.40
787 795 4.614475 TCCATGTCAGACTACCAAGAGAT 58.386 43.478 1.31 0.00 0.00 2.75
788 796 4.047627 TCCATGTCAGACTACCAAGAGA 57.952 45.455 1.31 0.00 0.00 3.10
789 797 4.161189 ACATCCATGTCAGACTACCAAGAG 59.839 45.833 1.31 0.00 35.87 2.85
790 798 4.096681 ACATCCATGTCAGACTACCAAGA 58.903 43.478 1.31 0.00 35.87 3.02
791 799 4.478206 ACATCCATGTCAGACTACCAAG 57.522 45.455 1.31 0.00 35.87 3.61
792 800 5.023452 ACTACATCCATGTCAGACTACCAA 58.977 41.667 1.31 0.00 41.97 3.67
793 801 4.402474 CACTACATCCATGTCAGACTACCA 59.598 45.833 1.31 0.00 41.97 3.25
794 802 4.645136 TCACTACATCCATGTCAGACTACC 59.355 45.833 1.31 0.00 41.97 3.18
812 820 6.838090 AGACAGAATCTCCATCATCTTCACTA 59.162 38.462 0.00 0.00 28.16 2.74
937 945 2.502142 TCTCCGAAGCACCTGTACTA 57.498 50.000 0.00 0.00 0.00 1.82
1553 1584 3.740832 CGTTGTGTGCTAGTCATCTTTGA 59.259 43.478 0.00 0.00 0.00 2.69
1653 1684 3.214328 TCCCTGTCAAACTGAAGCTTTC 58.786 45.455 0.00 0.00 0.00 2.62
1823 1854 2.353889 CCTTGCTAGCATGCTACACAAG 59.646 50.000 34.14 34.14 37.36 3.16
1824 1855 2.290260 ACCTTGCTAGCATGCTACACAA 60.290 45.455 23.52 24.90 0.00 3.33
1825 1856 1.278985 ACCTTGCTAGCATGCTACACA 59.721 47.619 23.52 20.16 0.00 3.72
1826 1857 1.667724 CACCTTGCTAGCATGCTACAC 59.332 52.381 23.52 17.90 0.00 2.90
1827 1858 1.278985 ACACCTTGCTAGCATGCTACA 59.721 47.619 23.52 21.13 0.00 2.74
1828 1859 2.029838 ACACCTTGCTAGCATGCTAC 57.970 50.000 23.52 19.01 0.00 3.58
1829 1860 2.499693 TGTACACCTTGCTAGCATGCTA 59.500 45.455 25.40 25.40 0.00 3.49
1882 1929 1.400142 TGTGCGCCACATTTATACAGC 59.600 47.619 4.18 0.00 39.62 4.40
1949 1996 2.202878 TCTTGCCGCCGCATCTAC 60.203 61.111 0.00 0.00 46.67 2.59
2155 2202 8.581578 CCAACACCATAACCTACATTAAAAACT 58.418 33.333 0.00 0.00 0.00 2.66
2181 2229 1.065251 GGGTATCTTCGACAGACGGAC 59.935 57.143 0.00 0.00 42.82 4.79
2189 2237 3.498927 TGTTTCTCGGGTATCTTCGAC 57.501 47.619 0.00 0.00 0.00 4.20
2223 2271 0.171231 TCTCGTGCATCTCTTGTCCG 59.829 55.000 0.00 0.00 0.00 4.79
2493 2555 0.320247 AACTCGAGTGCCTCTTGCTG 60.320 55.000 20.85 0.00 42.00 4.41
2607 2669 1.081840 GAGCTTTGTCACGGCTTGC 60.082 57.895 0.00 0.00 36.37 4.01
2948 3011 6.625740 GCACAGATTTGCAGCCTATAGAAAAA 60.626 38.462 0.00 0.00 42.49 1.94
2979 3042 3.260931 CAGCAAGCTGTCGCACAT 58.739 55.556 13.72 0.00 39.10 3.21
3332 3395 3.479269 GCGGAGAAACTCGGCGTG 61.479 66.667 6.85 7.20 44.30 5.34
3374 3437 4.650972 ATTTGACTGCCACCTAACCTTA 57.349 40.909 0.00 0.00 0.00 2.69
3419 3482 7.235606 AGCATAGTATGTCTCCTAAAGCCATTA 59.764 37.037 11.73 0.00 0.00 1.90
3447 3510 8.564648 TCAAATTATATACGAACACACTACCG 57.435 34.615 0.00 0.00 0.00 4.02
3587 3650 2.279851 CGAAGTGTGTGCCGTCCA 60.280 61.111 0.00 0.00 0.00 4.02
3603 3666 0.456995 GAGCTCTCCGTGAGAAACCG 60.457 60.000 6.43 0.00 45.39 4.44
3687 3751 5.163513 ACATGCCAAATCGAAGACATTTTC 58.836 37.500 0.00 0.00 42.51 2.29
3761 3825 9.094578 TCAAGAATATGGTTGGGAAAATTACAA 57.905 29.630 0.00 0.00 0.00 2.41
3772 3836 5.359756 TGAGTCGATCAAGAATATGGTTGG 58.640 41.667 0.00 0.00 34.02 3.77
3801 3865 0.390124 CCCCGCGTATAGGCTTGTAA 59.610 55.000 14.94 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.