Multiple sequence alignment - TraesCS1B01G440300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G440300 chr1B 100.000 3405 0 0 1 3405 661928605 661932009 0.000000e+00 6288.0
1 TraesCS1B01G440300 chr1B 83.636 715 72 16 1084 1759 662020298 662021006 6.200000e-177 630.0
2 TraesCS1B01G440300 chr1B 79.340 939 91 51 883 1737 662004971 662005890 6.380000e-157 564.0
3 TraesCS1B01G440300 chr1B 86.465 495 46 14 1079 1552 662016386 662016880 1.080000e-144 523.0
4 TraesCS1B01G440300 chr1B 83.000 300 49 2 13 311 409956618 409956320 1.560000e-68 270.0
5 TraesCS1B01G440300 chr1B 91.156 147 13 0 318 464 593908690 593908836 2.070000e-47 200.0
6 TraesCS1B01G440300 chr1D 88.549 1502 76 30 633 2074 475863327 475864792 0.000000e+00 1733.0
7 TraesCS1B01G440300 chr1D 87.629 873 75 24 2556 3404 475867080 475867943 0.000000e+00 983.0
8 TraesCS1B01G440300 chr1D 82.449 735 71 23 1080 1759 475923146 475923877 1.050000e-164 590.0
9 TraesCS1B01G440300 chr1D 86.842 494 50 4 1072 1550 475918695 475919188 3.870000e-149 538.0
10 TraesCS1B01G440300 chr1D 81.538 650 61 37 951 1554 475913078 475913714 6.610000e-132 481.0
11 TraesCS1B01G440300 chr1D 86.397 272 16 6 2211 2467 475865230 475865495 9.310000e-71 278.0
12 TraesCS1B01G440300 chr1D 95.775 142 6 0 2073 2214 475864831 475864972 2.640000e-56 230.0
13 TraesCS1B01G440300 chr1A 87.649 1093 59 25 940 1978 571724590 571725660 0.000000e+00 1201.0
14 TraesCS1B01G440300 chr1A 82.320 724 71 21 1084 1753 571787035 571787755 2.950000e-160 575.0
15 TraesCS1B01G440300 chr1A 78.883 985 103 48 951 1858 571737345 571738301 1.370000e-158 569.0
16 TraesCS1B01G440300 chr1A 83.235 340 39 9 1074 1395 571743775 571744114 2.570000e-76 296.0
17 TraesCS1B01G440300 chr1A 92.233 206 13 3 609 813 571724233 571724436 4.300000e-74 289.0
18 TraesCS1B01G440300 chr1A 93.478 138 9 0 325 462 548586144 548586281 4.450000e-49 206.0
19 TraesCS1B01G440300 chr1A 89.091 110 12 0 1445 1554 571744134 571744243 1.650000e-28 137.0
20 TraesCS1B01G440300 chr1A 97.674 43 1 0 2032 2074 571725678 571725720 1.310000e-09 75.0
21 TraesCS1B01G440300 chr4A 84.433 803 101 17 2574 3362 736821805 736822597 0.000000e+00 769.0
22 TraesCS1B01G440300 chr4A 84.237 793 104 19 2553 3331 17780662 17781447 0.000000e+00 752.0
23 TraesCS1B01G440300 chr4A 83.560 809 105 19 2571 3362 735741328 735742125 0.000000e+00 732.0
24 TraesCS1B01G440300 chr4A 83.509 758 96 18 2596 3335 736426419 736425673 0.000000e+00 680.0
25 TraesCS1B01G440300 chr2D 84.921 756 94 15 2571 3310 531769569 531768818 0.000000e+00 747.0
26 TraesCS1B01G440300 chr2D 85.211 710 84 15 2667 3362 575768698 575769400 0.000000e+00 710.0
27 TraesCS1B01G440300 chr2D 85.714 308 43 1 1 307 73221881 73222188 1.180000e-84 324.0
28 TraesCS1B01G440300 chr6B 83.423 742 98 19 2606 3328 27899647 27900382 0.000000e+00 665.0
29 TraesCS1B01G440300 chr6B 92.466 146 11 0 325 470 636490784 636490639 3.440000e-50 209.0
30 TraesCS1B01G440300 chr7A 79.752 805 126 29 2586 3365 545475658 545474866 1.790000e-152 549.0
31 TraesCS1B01G440300 chr7A 92.000 50 4 0 1361 1410 74159830 74159879 1.700000e-08 71.3
32 TraesCS1B01G440300 chr5B 86.333 300 39 2 3 301 25286916 25287214 3.280000e-85 326.0
33 TraesCS1B01G440300 chr5B 93.151 146 9 1 325 470 346616302 346616158 2.660000e-51 213.0
34 TraesCS1B01G440300 chr5B 77.512 209 29 17 2834 3032 382789352 382789552 3.590000e-20 110.0
35 TraesCS1B01G440300 chr7D 82.748 313 50 4 2 312 75078752 75079062 3.350000e-70 276.0
36 TraesCS1B01G440300 chr7D 90.000 50 5 0 1361 1410 66697020 66696971 7.890000e-07 65.8
37 TraesCS1B01G440300 chrUn 84.091 264 42 0 3 266 138314713 138314450 4.360000e-64 255.0
38 TraesCS1B01G440300 chrUn 84.091 264 42 0 3 266 172151086 172151349 4.360000e-64 255.0
39 TraesCS1B01G440300 chrUn 84.091 264 42 0 3 266 196918011 196917748 4.360000e-64 255.0
40 TraesCS1B01G440300 chrUn 84.091 264 42 0 3 266 286967731 286967468 4.360000e-64 255.0
41 TraesCS1B01G440300 chrUn 84.091 264 42 0 3 266 298260560 298260823 4.360000e-64 255.0
42 TraesCS1B01G440300 chr2B 91.837 147 12 0 325 471 614418276 614418130 4.450000e-49 206.0
43 TraesCS1B01G440300 chr2B 91.724 145 11 1 325 469 763446690 763446833 2.070000e-47 200.0
44 TraesCS1B01G440300 chr3B 92.857 140 10 0 325 464 723448575 723448436 1.600000e-48 204.0
45 TraesCS1B01G440300 chr7B 89.809 157 14 2 324 479 47004556 47004401 2.070000e-47 200.0
46 TraesCS1B01G440300 chr5D 89.610 154 15 1 321 474 58419475 58419323 9.640000e-46 195.0
47 TraesCS1B01G440300 chr5D 78.723 282 49 8 2889 3165 560256224 560255949 9.710000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G440300 chr1B 661928605 661932009 3404 False 6288.000000 6288 100.000000 1 3405 1 chr1B.!!$F2 3404
1 TraesCS1B01G440300 chr1B 662016386 662021006 4620 False 576.500000 630 85.050500 1079 1759 2 chr1B.!!$F4 680
2 TraesCS1B01G440300 chr1B 662004971 662005890 919 False 564.000000 564 79.340000 883 1737 1 chr1B.!!$F3 854
3 TraesCS1B01G440300 chr1D 475863327 475867943 4616 False 806.000000 1733 89.587500 633 3404 4 chr1D.!!$F2 2771
4 TraesCS1B01G440300 chr1D 475918695 475923877 5182 False 564.000000 590 84.645500 1072 1759 2 chr1D.!!$F3 687
5 TraesCS1B01G440300 chr1D 475913078 475913714 636 False 481.000000 481 81.538000 951 1554 1 chr1D.!!$F1 603
6 TraesCS1B01G440300 chr1A 571787035 571787755 720 False 575.000000 575 82.320000 1084 1753 1 chr1A.!!$F3 669
7 TraesCS1B01G440300 chr1A 571737345 571738301 956 False 569.000000 569 78.883000 951 1858 1 chr1A.!!$F2 907
8 TraesCS1B01G440300 chr1A 571724233 571725720 1487 False 521.666667 1201 92.518667 609 2074 3 chr1A.!!$F4 1465
9 TraesCS1B01G440300 chr4A 736821805 736822597 792 False 769.000000 769 84.433000 2574 3362 1 chr4A.!!$F3 788
10 TraesCS1B01G440300 chr4A 17780662 17781447 785 False 752.000000 752 84.237000 2553 3331 1 chr4A.!!$F1 778
11 TraesCS1B01G440300 chr4A 735741328 735742125 797 False 732.000000 732 83.560000 2571 3362 1 chr4A.!!$F2 791
12 TraesCS1B01G440300 chr4A 736425673 736426419 746 True 680.000000 680 83.509000 2596 3335 1 chr4A.!!$R1 739
13 TraesCS1B01G440300 chr2D 531768818 531769569 751 True 747.000000 747 84.921000 2571 3310 1 chr2D.!!$R1 739
14 TraesCS1B01G440300 chr2D 575768698 575769400 702 False 710.000000 710 85.211000 2667 3362 1 chr2D.!!$F2 695
15 TraesCS1B01G440300 chr6B 27899647 27900382 735 False 665.000000 665 83.423000 2606 3328 1 chr6B.!!$F1 722
16 TraesCS1B01G440300 chr7A 545474866 545475658 792 True 549.000000 549 79.752000 2586 3365 1 chr7A.!!$R1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.035176 TGGTTGTGCCCGGTAGTAAC 59.965 55.0 0.0 0.3 36.04 2.50 F
188 189 0.038618 TTATGATCGGGCGATGACGG 60.039 55.0 0.0 0.0 40.15 4.79 F
1515 8863 0.179111 CCCGCTGCTCTTCGATGTTA 60.179 55.0 0.0 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 9157 0.106149 AACCACTCGTCCAGTTGACC 59.894 55.0 0.00 0.0 41.18 4.02 R
1801 9200 0.395312 GTTCTGAACCTCCGGTTGGA 59.605 55.0 19.97 0.0 46.95 3.53 R
2456 10187 1.398692 TTGCGAGGGTTGCTTTTTCT 58.601 45.0 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.153369 TTGTAGCAGAGGCATCGGC 60.153 57.895 15.79 15.79 45.79 5.54
22 23 2.437359 GCAGAGGCATCGGCAAGT 60.437 61.111 18.49 0.00 44.92 3.16
25 26 2.825836 GAGGCATCGGCAAGTGGG 60.826 66.667 0.00 0.00 43.71 4.61
26 27 4.431131 AGGCATCGGCAAGTGGGG 62.431 66.667 0.00 0.00 43.71 4.96
50 51 2.970639 GCACAGGCGGAGTACAGA 59.029 61.111 0.00 0.00 0.00 3.41
51 52 1.153745 GCACAGGCGGAGTACAGAG 60.154 63.158 0.00 0.00 0.00 3.35
54 55 0.038455 ACAGGCGGAGTACAGAGTCT 59.962 55.000 0.00 0.00 0.00 3.24
55 56 1.178276 CAGGCGGAGTACAGAGTCTT 58.822 55.000 0.00 0.00 0.00 3.01
56 57 2.290768 ACAGGCGGAGTACAGAGTCTTA 60.291 50.000 0.00 0.00 0.00 2.10
57 58 2.097791 CAGGCGGAGTACAGAGTCTTAC 59.902 54.545 0.00 0.00 0.00 2.34
58 59 2.089980 GGCGGAGTACAGAGTCTTACA 58.910 52.381 12.20 0.00 0.00 2.41
59 60 2.688958 GGCGGAGTACAGAGTCTTACAT 59.311 50.000 12.20 2.18 0.00 2.29
60 61 3.130693 GGCGGAGTACAGAGTCTTACATT 59.869 47.826 12.20 0.00 0.00 2.71
62 63 4.799428 GCGGAGTACAGAGTCTTACATTTC 59.201 45.833 12.20 4.64 0.00 2.17
63 64 5.621555 GCGGAGTACAGAGTCTTACATTTCA 60.622 44.000 12.20 0.00 0.00 2.69
64 65 6.030849 CGGAGTACAGAGTCTTACATTTCAG 58.969 44.000 12.20 2.90 0.00 3.02
65 66 6.334202 GGAGTACAGAGTCTTACATTTCAGG 58.666 44.000 12.20 0.00 0.00 3.86
67 68 5.780793 AGTACAGAGTCTTACATTTCAGGGT 59.219 40.000 12.20 0.00 0.00 4.34
68 69 6.952358 AGTACAGAGTCTTACATTTCAGGGTA 59.048 38.462 12.20 0.00 0.00 3.69
70 71 7.074653 ACAGAGTCTTACATTTCAGGGTAAA 57.925 36.000 0.00 0.00 0.00 2.01
71 72 7.514721 ACAGAGTCTTACATTTCAGGGTAAAA 58.485 34.615 0.00 0.00 0.00 1.52
72 73 7.996644 ACAGAGTCTTACATTTCAGGGTAAAAA 59.003 33.333 0.00 0.00 0.00 1.94
74 75 8.218488 AGAGTCTTACATTTCAGGGTAAAAACT 58.782 33.333 0.00 0.00 32.60 2.66
75 76 8.392372 AGTCTTACATTTCAGGGTAAAAACTC 57.608 34.615 0.00 0.00 0.00 3.01
76 77 7.996644 AGTCTTACATTTCAGGGTAAAAACTCA 59.003 33.333 0.00 0.00 0.00 3.41
77 78 8.626526 GTCTTACATTTCAGGGTAAAAACTCAA 58.373 33.333 0.00 0.00 0.00 3.02
79 80 6.405278 ACATTTCAGGGTAAAAACTCAAGG 57.595 37.500 0.00 0.00 0.00 3.61
80 81 4.929819 TTTCAGGGTAAAAACTCAAGGC 57.070 40.909 0.00 0.00 0.00 4.35
81 82 3.586470 TCAGGGTAAAAACTCAAGGCA 57.414 42.857 0.00 0.00 0.00 4.75
85 86 2.353704 GGGTAAAAACTCAAGGCATGGC 60.354 50.000 12.14 12.14 0.00 4.40
97 98 2.314323 GGCATGGCCTTAATTGGTTG 57.686 50.000 8.35 0.00 46.69 3.77
98 99 1.554617 GGCATGGCCTTAATTGGTTGT 59.445 47.619 8.35 0.00 46.69 3.32
100 101 2.620242 CATGGCCTTAATTGGTTGTGC 58.380 47.619 3.32 0.00 0.00 4.57
102 103 0.249120 GGCCTTAATTGGTTGTGCCC 59.751 55.000 0.00 0.00 36.04 5.36
103 104 0.108851 GCCTTAATTGGTTGTGCCCG 60.109 55.000 0.00 0.00 36.04 6.13
104 105 0.530288 CCTTAATTGGTTGTGCCCGG 59.470 55.000 0.00 0.00 36.04 5.73
105 106 1.253100 CTTAATTGGTTGTGCCCGGT 58.747 50.000 0.00 0.00 36.04 5.28
108 109 0.111639 AATTGGTTGTGCCCGGTAGT 59.888 50.000 0.00 0.00 36.04 2.73
109 110 0.985760 ATTGGTTGTGCCCGGTAGTA 59.014 50.000 0.00 0.00 36.04 1.82
110 111 0.763652 TTGGTTGTGCCCGGTAGTAA 59.236 50.000 0.00 0.00 36.04 2.24
111 112 0.035176 TGGTTGTGCCCGGTAGTAAC 59.965 55.000 0.00 0.30 36.04 2.50
113 114 0.322648 GTTGTGCCCGGTAGTAACCT 59.677 55.000 0.00 0.00 44.35 3.50
114 115 1.058284 TTGTGCCCGGTAGTAACCTT 58.942 50.000 0.00 0.00 44.35 3.50
115 116 0.322322 TGTGCCCGGTAGTAACCTTG 59.678 55.000 0.00 0.00 44.35 3.61
116 117 0.322648 GTGCCCGGTAGTAACCTTGT 59.677 55.000 0.00 0.00 44.35 3.16
117 118 1.058284 TGCCCGGTAGTAACCTTGTT 58.942 50.000 0.00 0.00 44.35 2.83
119 120 1.002315 GCCCGGTAGTAACCTTGTTGA 59.998 52.381 0.00 0.00 44.35 3.18
120 121 2.550639 GCCCGGTAGTAACCTTGTTGAA 60.551 50.000 0.00 0.00 44.35 2.69
121 122 3.332034 CCCGGTAGTAACCTTGTTGAAG 58.668 50.000 0.00 0.00 44.35 3.02
134 135 6.956299 CCTTGTTGAAGGCATTATTTTGAG 57.044 37.500 0.00 0.00 42.60 3.02
135 136 6.690530 CCTTGTTGAAGGCATTATTTTGAGA 58.309 36.000 0.00 0.00 42.60 3.27
137 138 6.899393 TGTTGAAGGCATTATTTTGAGAGT 57.101 33.333 0.00 0.00 0.00 3.24
140 141 4.142622 TGAAGGCATTATTTTGAGAGTGCG 60.143 41.667 0.00 0.00 33.62 5.34
142 143 2.682856 GGCATTATTTTGAGAGTGCGGA 59.317 45.455 0.00 0.00 33.62 5.54
143 144 3.316308 GGCATTATTTTGAGAGTGCGGAT 59.684 43.478 0.00 0.00 33.62 4.18
146 147 5.220931 GCATTATTTTGAGAGTGCGGATCTT 60.221 40.000 0.00 0.00 0.00 2.40
147 148 6.425504 CATTATTTTGAGAGTGCGGATCTTC 58.574 40.000 0.00 0.00 0.00 2.87
148 149 3.685139 TTTTGAGAGTGCGGATCTTCT 57.315 42.857 0.00 0.00 0.00 2.85
150 151 2.136298 TGAGAGTGCGGATCTTCTCT 57.864 50.000 13.98 6.16 39.54 3.10
151 152 3.283259 TGAGAGTGCGGATCTTCTCTA 57.717 47.619 13.98 2.76 37.39 2.43
153 154 2.552315 GAGAGTGCGGATCTTCTCTAGG 59.448 54.545 8.21 0.00 37.39 3.02
154 155 1.611491 GAGTGCGGATCTTCTCTAGGG 59.389 57.143 0.00 0.00 0.00 3.53
155 156 1.063567 AGTGCGGATCTTCTCTAGGGT 60.064 52.381 0.00 0.00 0.00 4.34
156 157 2.175069 AGTGCGGATCTTCTCTAGGGTA 59.825 50.000 0.00 0.00 0.00 3.69
157 158 2.957006 GTGCGGATCTTCTCTAGGGTAA 59.043 50.000 0.00 0.00 0.00 2.85
158 159 3.383825 GTGCGGATCTTCTCTAGGGTAAA 59.616 47.826 0.00 0.00 0.00 2.01
159 160 4.028131 TGCGGATCTTCTCTAGGGTAAAA 58.972 43.478 0.00 0.00 0.00 1.52
161 162 5.130477 TGCGGATCTTCTCTAGGGTAAAAAT 59.870 40.000 0.00 0.00 0.00 1.82
163 164 6.463190 GCGGATCTTCTCTAGGGTAAAAATCT 60.463 42.308 0.00 0.00 0.00 2.40
164 165 7.255871 GCGGATCTTCTCTAGGGTAAAAATCTA 60.256 40.741 0.00 0.00 0.00 1.98
165 166 8.639761 CGGATCTTCTCTAGGGTAAAAATCTAA 58.360 37.037 0.00 0.00 0.00 2.10
166 167 9.990360 GGATCTTCTCTAGGGTAAAAATCTAAG 57.010 37.037 0.00 0.00 0.00 2.18
180 181 9.827411 GTAAAAATCTAAGATTTATGATCGGGC 57.173 33.333 0.00 0.00 0.00 6.13
182 183 5.661056 ATCTAAGATTTATGATCGGGCGA 57.339 39.130 0.00 0.00 0.00 5.54
183 184 5.661056 TCTAAGATTTATGATCGGGCGAT 57.339 39.130 0.00 0.00 37.59 4.58
185 186 3.961480 AGATTTATGATCGGGCGATGA 57.039 42.857 0.00 0.00 34.60 2.92
186 187 3.589988 AGATTTATGATCGGGCGATGAC 58.410 45.455 0.00 0.00 34.60 3.06
187 188 1.778334 TTTATGATCGGGCGATGACG 58.222 50.000 0.00 0.00 42.93 4.35
188 189 0.038618 TTATGATCGGGCGATGACGG 60.039 55.000 0.00 0.00 40.15 4.79
189 190 1.176619 TATGATCGGGCGATGACGGT 61.177 55.000 0.00 0.00 40.15 4.83
194 195 3.499737 GGGCGATGACGGTGCTTG 61.500 66.667 0.00 0.00 40.15 4.01
195 196 2.742372 GGCGATGACGGTGCTTGT 60.742 61.111 0.00 0.00 40.15 3.16
196 197 2.476051 GCGATGACGGTGCTTGTG 59.524 61.111 0.00 0.00 40.15 3.33
198 199 2.316867 CGATGACGGTGCTTGTGCA 61.317 57.895 0.00 0.00 40.41 4.57
209 210 3.149436 TGCTTGTGCAGTGTTTTCTTC 57.851 42.857 0.00 0.00 45.31 2.87
210 211 2.754552 TGCTTGTGCAGTGTTTTCTTCT 59.245 40.909 0.00 0.00 45.31 2.85
211 212 3.193267 TGCTTGTGCAGTGTTTTCTTCTT 59.807 39.130 0.00 0.00 45.31 2.52
212 213 3.549070 GCTTGTGCAGTGTTTTCTTCTTG 59.451 43.478 0.00 0.00 39.41 3.02
213 214 4.675146 GCTTGTGCAGTGTTTTCTTCTTGA 60.675 41.667 0.00 0.00 39.41 3.02
214 215 5.384063 TTGTGCAGTGTTTTCTTCTTGAA 57.616 34.783 0.00 0.00 0.00 2.69
216 217 4.142403 TGTGCAGTGTTTTCTTCTTGAAGG 60.142 41.667 10.08 0.00 35.89 3.46
217 218 3.181487 TGCAGTGTTTTCTTCTTGAAGGC 60.181 43.478 10.08 4.36 35.89 4.35
218 219 3.621794 CAGTGTTTTCTTCTTGAAGGCG 58.378 45.455 10.08 0.00 35.89 5.52
219 220 3.065371 CAGTGTTTTCTTCTTGAAGGCGT 59.935 43.478 10.08 0.00 35.89 5.68
220 221 3.312697 AGTGTTTTCTTCTTGAAGGCGTC 59.687 43.478 10.08 0.00 35.89 5.19
221 222 3.064820 GTGTTTTCTTCTTGAAGGCGTCA 59.935 43.478 10.08 0.00 35.89 4.35
223 224 2.910688 TTCTTCTTGAAGGCGTCACT 57.089 45.000 1.62 0.00 35.39 3.41
224 225 2.910688 TCTTCTTGAAGGCGTCACTT 57.089 45.000 1.62 0.00 35.39 3.16
225 226 3.194005 TCTTCTTGAAGGCGTCACTTT 57.806 42.857 1.62 0.00 35.39 2.66
227 228 3.312421 TCTTCTTGAAGGCGTCACTTTTG 59.688 43.478 1.62 0.00 35.39 2.44
228 229 1.946768 TCTTGAAGGCGTCACTTTTGG 59.053 47.619 1.62 0.00 35.39 3.28
229 230 1.946768 CTTGAAGGCGTCACTTTTGGA 59.053 47.619 1.62 0.00 35.39 3.53
232 233 2.218603 GAAGGCGTCACTTTTGGAGAA 58.781 47.619 0.00 0.00 0.00 2.87
233 234 2.568623 AGGCGTCACTTTTGGAGAAT 57.431 45.000 0.00 0.00 0.00 2.40
234 235 2.863809 AGGCGTCACTTTTGGAGAATT 58.136 42.857 0.00 0.00 0.00 2.17
235 236 3.222603 AGGCGTCACTTTTGGAGAATTT 58.777 40.909 0.00 0.00 0.00 1.82
239 240 4.441087 GCGTCACTTTTGGAGAATTTGAAC 59.559 41.667 0.00 0.00 0.00 3.18
240 241 5.733373 GCGTCACTTTTGGAGAATTTGAACT 60.733 40.000 0.00 0.00 0.00 3.01
241 242 6.265577 CGTCACTTTTGGAGAATTTGAACTT 58.734 36.000 0.00 0.00 0.00 2.66
242 243 6.414987 CGTCACTTTTGGAGAATTTGAACTTC 59.585 38.462 0.00 0.00 0.00 3.01
244 245 5.687285 CACTTTTGGAGAATTTGAACTTCGG 59.313 40.000 0.00 0.00 0.00 4.30
246 247 3.502123 TGGAGAATTTGAACTTCGGGT 57.498 42.857 0.00 0.00 0.00 5.28
247 248 3.146066 TGGAGAATTTGAACTTCGGGTG 58.854 45.455 0.00 0.00 0.00 4.61
248 249 3.146847 GGAGAATTTGAACTTCGGGTGT 58.853 45.455 0.00 0.00 0.00 4.16
249 250 3.568430 GGAGAATTTGAACTTCGGGTGTT 59.432 43.478 0.00 0.00 0.00 3.32
250 251 4.537015 GAGAATTTGAACTTCGGGTGTTG 58.463 43.478 0.00 0.00 0.00 3.33
251 252 3.951680 AGAATTTGAACTTCGGGTGTTGT 59.048 39.130 0.00 0.00 0.00 3.32
252 253 3.982576 ATTTGAACTTCGGGTGTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
253 254 2.702592 TTGAACTTCGGGTGTTGTCT 57.297 45.000 0.00 0.00 0.00 3.41
254 255 3.823281 TTGAACTTCGGGTGTTGTCTA 57.177 42.857 0.00 0.00 0.00 2.59
256 257 2.036733 TGAACTTCGGGTGTTGTCTAGG 59.963 50.000 0.00 0.00 0.00 3.02
257 258 1.713297 ACTTCGGGTGTTGTCTAGGT 58.287 50.000 0.00 0.00 0.00 3.08
258 259 1.343465 ACTTCGGGTGTTGTCTAGGTG 59.657 52.381 0.00 0.00 0.00 4.00
259 260 1.616865 CTTCGGGTGTTGTCTAGGTGA 59.383 52.381 0.00 0.00 0.00 4.02
260 261 1.933021 TCGGGTGTTGTCTAGGTGAT 58.067 50.000 0.00 0.00 0.00 3.06
261 262 1.548719 TCGGGTGTTGTCTAGGTGATG 59.451 52.381 0.00 0.00 0.00 3.07
262 263 1.405526 CGGGTGTTGTCTAGGTGATGG 60.406 57.143 0.00 0.00 0.00 3.51
263 264 1.628846 GGGTGTTGTCTAGGTGATGGT 59.371 52.381 0.00 0.00 0.00 3.55
264 265 2.039879 GGGTGTTGTCTAGGTGATGGTT 59.960 50.000 0.00 0.00 0.00 3.67
265 266 3.335579 GGTGTTGTCTAGGTGATGGTTC 58.664 50.000 0.00 0.00 0.00 3.62
267 268 2.631062 TGTTGTCTAGGTGATGGTTCGT 59.369 45.455 0.00 0.00 0.00 3.85
268 269 2.993899 GTTGTCTAGGTGATGGTTCGTG 59.006 50.000 0.00 0.00 0.00 4.35
269 270 2.244695 TGTCTAGGTGATGGTTCGTGT 58.755 47.619 0.00 0.00 0.00 4.49
270 271 2.631062 TGTCTAGGTGATGGTTCGTGTT 59.369 45.455 0.00 0.00 0.00 3.32
272 273 2.631062 TCTAGGTGATGGTTCGTGTTGT 59.369 45.455 0.00 0.00 0.00 3.32
274 275 0.591170 GGTGATGGTTCGTGTTGTGG 59.409 55.000 0.00 0.00 0.00 4.17
275 276 1.305201 GTGATGGTTCGTGTTGTGGT 58.695 50.000 0.00 0.00 0.00 4.16
276 277 1.673920 GTGATGGTTCGTGTTGTGGTT 59.326 47.619 0.00 0.00 0.00 3.67
277 278 2.873472 GTGATGGTTCGTGTTGTGGTTA 59.127 45.455 0.00 0.00 0.00 2.85
279 280 2.398252 TGGTTCGTGTTGTGGTTACA 57.602 45.000 0.00 0.00 34.31 2.41
280 281 2.708051 TGGTTCGTGTTGTGGTTACAA 58.292 42.857 0.00 0.00 44.17 2.41
282 283 2.032426 GGTTCGTGTTGTGGTTACAAGG 59.968 50.000 0.00 0.00 46.75 3.61
283 284 2.937799 GTTCGTGTTGTGGTTACAAGGA 59.062 45.455 0.00 0.00 46.75 3.36
284 285 3.263489 TCGTGTTGTGGTTACAAGGAA 57.737 42.857 0.00 0.00 46.75 3.36
285 286 3.811083 TCGTGTTGTGGTTACAAGGAAT 58.189 40.909 0.00 0.00 46.75 3.01
286 287 4.200874 TCGTGTTGTGGTTACAAGGAATT 58.799 39.130 0.00 0.00 46.75 2.17
288 289 4.035792 CGTGTTGTGGTTACAAGGAATTGA 59.964 41.667 0.00 0.00 46.75 2.57
289 290 5.278266 CGTGTTGTGGTTACAAGGAATTGAT 60.278 40.000 0.00 0.00 46.75 2.57
291 292 5.830457 TGTTGTGGTTACAAGGAATTGATCA 59.170 36.000 0.00 0.00 46.75 2.92
292 293 5.957842 TGTGGTTACAAGGAATTGATCAC 57.042 39.130 0.00 0.00 32.88 3.06
293 294 5.630121 TGTGGTTACAAGGAATTGATCACT 58.370 37.500 0.00 0.00 32.88 3.41
294 295 6.068010 TGTGGTTACAAGGAATTGATCACTT 58.932 36.000 0.00 0.00 32.88 3.16
295 296 7.227873 TGTGGTTACAAGGAATTGATCACTTA 58.772 34.615 0.00 0.00 32.88 2.24
298 299 6.456988 GGTTACAAGGAATTGATCACTTAGCG 60.457 42.308 0.00 0.00 0.00 4.26
299 300 4.832248 ACAAGGAATTGATCACTTAGCGA 58.168 39.130 0.00 0.00 0.00 4.93
300 301 4.872691 ACAAGGAATTGATCACTTAGCGAG 59.127 41.667 0.00 0.00 0.00 5.03
301 302 5.111989 CAAGGAATTGATCACTTAGCGAGA 58.888 41.667 0.00 0.00 0.00 4.04
302 303 5.543507 AGGAATTGATCACTTAGCGAGAT 57.456 39.130 0.00 0.00 0.00 2.75
303 304 5.537188 AGGAATTGATCACTTAGCGAGATC 58.463 41.667 0.00 0.00 39.36 2.75
304 305 5.304101 AGGAATTGATCACTTAGCGAGATCT 59.696 40.000 0.00 0.00 39.55 2.75
305 306 5.988561 GGAATTGATCACTTAGCGAGATCTT 59.011 40.000 0.00 0.00 39.55 2.40
306 307 6.481644 GGAATTGATCACTTAGCGAGATCTTT 59.518 38.462 0.00 5.53 39.55 2.52
307 308 7.307101 GGAATTGATCACTTAGCGAGATCTTTC 60.307 40.741 0.00 11.21 39.55 2.62
308 309 5.843673 TGATCACTTAGCGAGATCTTTCT 57.156 39.130 0.00 0.00 39.55 2.52
309 310 6.214191 TGATCACTTAGCGAGATCTTTCTT 57.786 37.500 0.00 0.00 39.55 2.52
310 311 6.634805 TGATCACTTAGCGAGATCTTTCTTT 58.365 36.000 0.00 0.00 39.55 2.52
311 312 7.099764 TGATCACTTAGCGAGATCTTTCTTTT 58.900 34.615 0.00 0.00 39.55 2.27
312 313 8.251026 TGATCACTTAGCGAGATCTTTCTTTTA 58.749 33.333 0.00 0.00 39.55 1.52
313 314 9.088512 GATCACTTAGCGAGATCTTTCTTTTAA 57.911 33.333 0.00 0.00 36.95 1.52
314 315 8.240883 TCACTTAGCGAGATCTTTCTTTTAAC 57.759 34.615 0.00 0.00 30.30 2.01
315 316 8.088981 TCACTTAGCGAGATCTTTCTTTTAACT 58.911 33.333 0.00 0.00 30.30 2.24
316 317 8.376942 CACTTAGCGAGATCTTTCTTTTAACTC 58.623 37.037 0.00 0.00 30.30 3.01
317 318 8.088981 ACTTAGCGAGATCTTTCTTTTAACTCA 58.911 33.333 0.00 0.00 30.30 3.41
319 320 7.532682 AGCGAGATCTTTCTTTTAACTCATC 57.467 36.000 0.00 0.00 30.30 2.92
320 321 7.327214 AGCGAGATCTTTCTTTTAACTCATCT 58.673 34.615 0.00 0.00 30.30 2.90
321 322 8.470805 AGCGAGATCTTTCTTTTAACTCATCTA 58.529 33.333 0.00 0.00 30.30 1.98
331 332 9.877178 TTCTTTTAACTCATCTAGATTGGTCTC 57.123 33.333 1.33 0.00 35.87 3.36
332 333 9.035890 TCTTTTAACTCATCTAGATTGGTCTCA 57.964 33.333 1.33 0.00 35.87 3.27
333 334 9.829507 CTTTTAACTCATCTAGATTGGTCTCAT 57.170 33.333 1.33 0.00 35.87 2.90
335 336 9.823647 TTTAACTCATCTAGATTGGTCTCATTC 57.176 33.333 1.33 0.00 35.87 2.67
337 338 6.815089 ACTCATCTAGATTGGTCTCATTCAC 58.185 40.000 1.33 0.00 35.87 3.18
338 339 6.166984 TCATCTAGATTGGTCTCATTCACC 57.833 41.667 1.33 0.00 35.87 4.02
339 340 5.901853 TCATCTAGATTGGTCTCATTCACCT 59.098 40.000 1.33 0.00 35.87 4.00
340 341 6.385176 TCATCTAGATTGGTCTCATTCACCTT 59.615 38.462 1.33 0.00 35.87 3.50
341 342 6.627087 TCTAGATTGGTCTCATTCACCTTT 57.373 37.500 0.00 0.00 35.87 3.11
342 343 7.020827 TCTAGATTGGTCTCATTCACCTTTT 57.979 36.000 0.00 0.00 35.87 2.27
343 344 8.146053 TCTAGATTGGTCTCATTCACCTTTTA 57.854 34.615 0.00 0.00 35.87 1.52
344 345 8.772250 TCTAGATTGGTCTCATTCACCTTTTAT 58.228 33.333 0.00 0.00 35.87 1.40
346 347 8.970859 AGATTGGTCTCATTCACCTTTTATAG 57.029 34.615 0.00 0.00 34.66 1.31
348 349 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
349 350 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
350 351 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
351 352 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
352 353 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
353 354 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
355 356 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
358 359 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
359 360 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
360 361 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
361 362 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
363 364 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
364 365 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
365 366 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
366 367 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
367 368 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
368 369 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
369 370 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
370 371 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
371 372 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
372 373 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
373 374 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
374 375 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
375 376 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
376 377 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
381 382 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
382 383 3.181480 TGCTATAAGATGCGTGTGTGCTA 60.181 43.478 0.00 0.00 35.36 3.49
383 384 3.802139 GCTATAAGATGCGTGTGTGCTAA 59.198 43.478 0.00 0.00 35.36 3.09
385 386 1.156736 AAGATGCGTGTGTGCTAACC 58.843 50.000 0.00 0.00 35.36 2.85
386 387 0.321671 AGATGCGTGTGTGCTAACCT 59.678 50.000 0.00 0.00 35.36 3.50
387 388 0.443869 GATGCGTGTGTGCTAACCTG 59.556 55.000 0.00 0.00 35.36 4.00
389 390 1.301401 GCGTGTGTGCTAACCTGGA 60.301 57.895 0.00 0.00 0.00 3.86
390 391 0.673644 GCGTGTGTGCTAACCTGGAT 60.674 55.000 0.00 0.00 0.00 3.41
391 392 1.808411 CGTGTGTGCTAACCTGGATT 58.192 50.000 0.00 0.00 0.00 3.01
392 393 2.151202 CGTGTGTGCTAACCTGGATTT 58.849 47.619 0.00 0.00 0.00 2.17
393 394 2.552315 CGTGTGTGCTAACCTGGATTTT 59.448 45.455 0.00 0.00 0.00 1.82
394 395 3.749088 CGTGTGTGCTAACCTGGATTTTA 59.251 43.478 0.00 0.00 0.00 1.52
395 396 4.394920 CGTGTGTGCTAACCTGGATTTTAT 59.605 41.667 0.00 0.00 0.00 1.40
397 398 5.648092 GTGTGTGCTAACCTGGATTTTATCT 59.352 40.000 0.00 0.00 0.00 1.98
399 400 5.648092 GTGTGCTAACCTGGATTTTATCTGT 59.352 40.000 0.00 0.00 0.00 3.41
400 401 6.151144 GTGTGCTAACCTGGATTTTATCTGTT 59.849 38.462 0.00 0.00 0.00 3.16
403 404 7.121315 GTGCTAACCTGGATTTTATCTGTTCTT 59.879 37.037 0.00 0.00 0.00 2.52
404 405 8.325787 TGCTAACCTGGATTTTATCTGTTCTTA 58.674 33.333 0.00 0.00 0.00 2.10
405 406 9.343539 GCTAACCTGGATTTTATCTGTTCTTAT 57.656 33.333 0.00 0.00 0.00 1.73
421 422 6.934056 TGTTCTTATTTTCCATGTGAATGGG 58.066 36.000 4.96 0.00 41.95 4.00
422 423 6.723515 TGTTCTTATTTTCCATGTGAATGGGA 59.276 34.615 4.96 0.00 41.95 4.37
424 425 5.656416 TCTTATTTTCCATGTGAATGGGACC 59.344 40.000 4.96 0.00 41.95 4.46
426 427 0.988063 TTCCATGTGAATGGGACCGA 59.012 50.000 4.96 0.00 41.95 4.69
427 428 0.988063 TCCATGTGAATGGGACCGAA 59.012 50.000 4.96 0.00 41.95 4.30
428 429 1.563879 TCCATGTGAATGGGACCGAAT 59.436 47.619 4.96 0.00 41.95 3.34
429 430 2.025416 TCCATGTGAATGGGACCGAATT 60.025 45.455 4.96 0.00 41.95 2.17
430 431 3.201045 TCCATGTGAATGGGACCGAATTA 59.799 43.478 4.96 0.00 41.95 1.40
431 432 4.141274 TCCATGTGAATGGGACCGAATTAT 60.141 41.667 4.96 0.00 41.95 1.28
433 434 5.945784 CCATGTGAATGGGACCGAATTATAT 59.054 40.000 0.00 0.00 38.04 0.86
434 435 6.094048 CCATGTGAATGGGACCGAATTATATC 59.906 42.308 0.00 0.00 38.04 1.63
435 436 6.433847 TGTGAATGGGACCGAATTATATCT 57.566 37.500 0.00 0.00 0.00 1.98
437 438 6.042666 TGTGAATGGGACCGAATTATATCTCA 59.957 38.462 0.00 0.00 0.00 3.27
438 439 7.106239 GTGAATGGGACCGAATTATATCTCAT 58.894 38.462 0.00 0.00 33.60 2.90
439 440 7.607991 GTGAATGGGACCGAATTATATCTCATT 59.392 37.037 9.18 9.18 43.39 2.57
440 441 8.163408 TGAATGGGACCGAATTATATCTCATTT 58.837 33.333 10.28 0.00 41.32 2.32
441 442 9.667107 GAATGGGACCGAATTATATCTCATTTA 57.333 33.333 10.28 0.00 41.32 1.40
442 443 9.672673 AATGGGACCGAATTATATCTCATTTAG 57.327 33.333 5.11 0.00 38.80 1.85
443 444 8.430573 TGGGACCGAATTATATCTCATTTAGA 57.569 34.615 0.00 0.00 39.02 2.10
444 445 9.046846 TGGGACCGAATTATATCTCATTTAGAT 57.953 33.333 0.00 0.00 46.95 1.98
445 446 9.319143 GGGACCGAATTATATCTCATTTAGATG 57.681 37.037 0.00 0.00 44.95 2.90
460 461 8.466617 TCATTTAGATGAGTTCTAGGTACTCC 57.533 38.462 17.72 8.04 41.02 3.85
461 462 7.506261 TCATTTAGATGAGTTCTAGGTACTCCC 59.494 40.741 17.72 12.05 41.02 4.30
463 464 5.475398 AGATGAGTTCTAGGTACTCCCTT 57.525 43.478 17.72 7.62 42.73 3.95
465 466 4.949966 TGAGTTCTAGGTACTCCCTTCT 57.050 45.455 17.72 0.00 42.73 2.85
467 468 5.652324 TGAGTTCTAGGTACTCCCTTCTTT 58.348 41.667 17.72 0.00 42.73 2.52
468 469 6.082707 TGAGTTCTAGGTACTCCCTTCTTTT 58.917 40.000 17.72 0.00 42.73 2.27
469 470 6.557633 TGAGTTCTAGGTACTCCCTTCTTTTT 59.442 38.462 17.72 0.00 42.73 1.94
492 493 9.904198 TTTTTCATTTTCCCTTCTTCTTCATTT 57.096 25.926 0.00 0.00 0.00 2.32
493 494 9.904198 TTTTCATTTTCCCTTCTTCTTCATTTT 57.096 25.926 0.00 0.00 0.00 1.82
494 495 9.904198 TTTCATTTTCCCTTCTTCTTCATTTTT 57.096 25.926 0.00 0.00 0.00 1.94
497 498 9.112725 CATTTTCCCTTCTTCTTCATTTTTGTT 57.887 29.630 0.00 0.00 0.00 2.83
498 499 9.685276 ATTTTCCCTTCTTCTTCATTTTTGTTT 57.315 25.926 0.00 0.00 0.00 2.83
500 501 9.513906 TTTCCCTTCTTCTTCATTTTTGTTTTT 57.486 25.926 0.00 0.00 0.00 1.94
518 519 3.883830 TTTTTGGTTGTGTGCATCTGT 57.116 38.095 0.00 0.00 0.00 3.41
519 520 4.991153 TTTTTGGTTGTGTGCATCTGTA 57.009 36.364 0.00 0.00 0.00 2.74
520 521 4.991153 TTTTGGTTGTGTGCATCTGTAA 57.009 36.364 0.00 0.00 0.00 2.41
521 522 5.528043 TTTTGGTTGTGTGCATCTGTAAT 57.472 34.783 0.00 0.00 0.00 1.89
522 523 4.502171 TTGGTTGTGTGCATCTGTAATG 57.498 40.909 0.00 0.00 0.00 1.90
523 524 3.485394 TGGTTGTGTGCATCTGTAATGT 58.515 40.909 0.00 0.00 0.00 2.71
524 525 3.501828 TGGTTGTGTGCATCTGTAATGTC 59.498 43.478 0.00 0.00 0.00 3.06
525 526 3.753272 GGTTGTGTGCATCTGTAATGTCT 59.247 43.478 0.00 0.00 0.00 3.41
526 527 4.216257 GGTTGTGTGCATCTGTAATGTCTT 59.784 41.667 0.00 0.00 0.00 3.01
527 528 5.278463 GGTTGTGTGCATCTGTAATGTCTTT 60.278 40.000 0.00 0.00 0.00 2.52
528 529 6.072728 GGTTGTGTGCATCTGTAATGTCTTTA 60.073 38.462 0.00 0.00 0.00 1.85
530 531 5.994668 TGTGTGCATCTGTAATGTCTTTACA 59.005 36.000 10.08 10.08 46.18 2.41
531 532 6.654582 TGTGTGCATCTGTAATGTCTTTACAT 59.345 34.615 10.74 0.00 46.88 2.29
533 534 6.878389 TGTGCATCTGTAATGTCTTTACATCA 59.122 34.615 10.74 3.41 46.88 3.07
534 535 7.553760 TGTGCATCTGTAATGTCTTTACATCAT 59.446 33.333 10.74 5.16 46.88 2.45
535 536 8.400947 GTGCATCTGTAATGTCTTTACATCATT 58.599 33.333 10.74 0.00 46.88 2.57
536 537 8.400186 TGCATCTGTAATGTCTTTACATCATTG 58.600 33.333 10.74 8.05 46.88 2.82
537 538 7.377928 GCATCTGTAATGTCTTTACATCATTGC 59.622 37.037 10.74 12.30 46.88 3.56
538 539 7.003939 TCTGTAATGTCTTTACATCATTGCG 57.996 36.000 10.74 0.56 46.88 4.85
539 540 6.593770 TCTGTAATGTCTTTACATCATTGCGT 59.406 34.615 10.74 0.00 46.88 5.24
540 541 7.119116 TCTGTAATGTCTTTACATCATTGCGTT 59.881 33.333 10.74 0.00 46.88 4.84
542 543 5.627499 ATGTCTTTACATCATTGCGTTGT 57.373 34.783 0.00 0.00 42.92 3.32
543 544 5.431420 TGTCTTTACATCATTGCGTTGTT 57.569 34.783 0.00 0.00 0.00 2.83
544 545 5.211454 TGTCTTTACATCATTGCGTTGTTG 58.789 37.500 0.00 0.00 0.00 3.33
545 546 4.088496 GTCTTTACATCATTGCGTTGTTGC 59.912 41.667 0.00 0.00 0.00 4.17
546 547 3.632855 TTACATCATTGCGTTGTTGCA 57.367 38.095 0.00 0.00 44.61 4.08
552 553 3.205395 TGCGTTGTTGCAAAGGCT 58.795 50.000 14.79 0.00 43.02 4.58
553 554 1.226916 TGCGTTGTTGCAAAGGCTG 60.227 52.632 14.79 1.01 43.02 4.85
554 555 1.226945 GCGTTGTTGCAAAGGCTGT 60.227 52.632 0.00 0.00 41.91 4.40
555 556 1.481819 GCGTTGTTGCAAAGGCTGTG 61.482 55.000 0.00 0.00 41.91 3.66
556 557 0.179140 CGTTGTTGCAAAGGCTGTGT 60.179 50.000 6.53 0.00 41.91 3.72
557 558 1.280066 GTTGTTGCAAAGGCTGTGTG 58.720 50.000 6.53 0.00 41.91 3.82
558 559 0.894141 TTGTTGCAAAGGCTGTGTGT 59.106 45.000 6.53 0.00 41.91 3.72
559 560 1.756430 TGTTGCAAAGGCTGTGTGTA 58.244 45.000 6.53 0.00 41.91 2.90
560 561 2.095461 TGTTGCAAAGGCTGTGTGTAA 58.905 42.857 6.53 0.00 41.91 2.41
561 562 2.692557 TGTTGCAAAGGCTGTGTGTAAT 59.307 40.909 6.53 0.00 41.91 1.89
562 563 3.131933 TGTTGCAAAGGCTGTGTGTAATT 59.868 39.130 6.53 0.00 41.91 1.40
564 565 2.954989 TGCAAAGGCTGTGTGTAATTGA 59.045 40.909 6.53 0.00 41.91 2.57
565 566 3.573538 TGCAAAGGCTGTGTGTAATTGAT 59.426 39.130 6.53 0.00 41.91 2.57
567 568 5.418524 TGCAAAGGCTGTGTGTAATTGATAT 59.581 36.000 6.53 0.00 41.91 1.63
568 569 5.973565 GCAAAGGCTGTGTGTAATTGATATC 59.026 40.000 6.53 0.00 36.96 1.63
569 570 6.183360 GCAAAGGCTGTGTGTAATTGATATCT 60.183 38.462 6.53 0.00 36.96 1.98
570 571 7.412853 CAAAGGCTGTGTGTAATTGATATCTC 58.587 38.462 3.98 0.00 0.00 2.75
572 573 6.286758 AGGCTGTGTGTAATTGATATCTCTG 58.713 40.000 3.98 0.00 0.00 3.35
575 576 6.037500 GCTGTGTGTAATTGATATCTCTGCAA 59.962 38.462 3.98 0.00 0.00 4.08
577 578 9.264719 CTGTGTGTAATTGATATCTCTGCAATA 57.735 33.333 3.98 0.00 32.39 1.90
578 579 9.783081 TGTGTGTAATTGATATCTCTGCAATAT 57.217 29.630 3.98 0.00 32.39 1.28
764 765 8.095937 ACTTAATTAAGTGTAGGAACAAGTGC 57.904 34.615 26.30 0.00 44.30 4.40
817 840 0.969894 AAGTGGTCGGAGAGTCTTGG 59.030 55.000 0.00 0.00 36.95 3.61
900 952 5.409520 CGATGAGTCATTCAACTTTTCTCCA 59.590 40.000 7.16 0.00 39.77 3.86
916 968 3.664107 TCTCCAGTCTTCGGTCAAAATG 58.336 45.455 0.00 0.00 0.00 2.32
932 996 2.354729 TGGCGGACCAATTCCCTG 59.645 61.111 0.00 0.00 45.37 4.45
933 997 2.355115 GGCGGACCAATTCCCTGT 59.645 61.111 0.00 0.00 42.27 4.00
934 998 1.749258 GGCGGACCAATTCCCTGTC 60.749 63.158 0.00 0.00 42.27 3.51
935 999 1.002624 GCGGACCAATTCCCTGTCA 60.003 57.895 0.00 0.00 42.27 3.58
936 1000 1.026718 GCGGACCAATTCCCTGTCAG 61.027 60.000 0.00 0.00 42.27 3.51
939 1003 1.566231 GGACCAATTCCCTGTCAGGAT 59.434 52.381 21.23 3.71 37.67 3.24
981 1045 1.132657 TCCGGCCCTATAAATCCTCCA 60.133 52.381 0.00 0.00 0.00 3.86
1068 1157 4.341783 GCCAGGTGCTGCTGACCT 62.342 66.667 5.88 5.88 45.23 3.85
1069 1158 2.046507 CCAGGTGCTGCTGACCTC 60.047 66.667 8.58 0.00 42.25 3.85
1511 8859 2.496817 GACCCGCTGCTCTTCGAT 59.503 61.111 0.00 0.00 0.00 3.59
1514 8862 1.448540 CCCGCTGCTCTTCGATGTT 60.449 57.895 0.00 0.00 0.00 2.71
1515 8863 0.179111 CCCGCTGCTCTTCGATGTTA 60.179 55.000 0.00 0.00 0.00 2.41
1590 8971 2.511145 GCTTCGAGCAGGAGCAGG 60.511 66.667 7.52 0.00 45.49 4.85
1760 9156 2.351276 GCTGACATGGGGTTCGGT 59.649 61.111 0.00 0.00 0.00 4.69
1761 9157 2.040544 GCTGACATGGGGTTCGGTG 61.041 63.158 0.00 0.00 0.00 4.94
1796 9195 2.737252 GTGGTTCTTGAATCTGTCCGAC 59.263 50.000 0.00 0.00 0.00 4.79
1797 9196 1.993370 GGTTCTTGAATCTGTCCGACG 59.007 52.381 0.00 0.00 0.00 5.12
1798 9197 1.390463 GTTCTTGAATCTGTCCGACGC 59.610 52.381 0.00 0.00 0.00 5.19
1799 9198 0.888619 TCTTGAATCTGTCCGACGCT 59.111 50.000 0.00 0.00 0.00 5.07
1800 9199 1.272490 TCTTGAATCTGTCCGACGCTT 59.728 47.619 0.00 0.00 0.00 4.68
1801 9200 2.069273 CTTGAATCTGTCCGACGCTTT 58.931 47.619 0.00 0.00 0.00 3.51
1802 9201 1.710013 TGAATCTGTCCGACGCTTTC 58.290 50.000 0.00 0.00 0.00 2.62
1803 9202 1.000145 GAATCTGTCCGACGCTTTCC 59.000 55.000 0.00 0.00 0.00 3.13
1804 9203 0.320374 AATCTGTCCGACGCTTTCCA 59.680 50.000 0.00 0.00 0.00 3.53
1805 9204 0.320374 ATCTGTCCGACGCTTTCCAA 59.680 50.000 0.00 0.00 0.00 3.53
1806 9205 0.599204 TCTGTCCGACGCTTTCCAAC 60.599 55.000 0.00 0.00 0.00 3.77
1807 9206 1.566018 CTGTCCGACGCTTTCCAACC 61.566 60.000 0.00 0.00 0.00 3.77
1808 9207 2.356553 TCCGACGCTTTCCAACCG 60.357 61.111 0.00 0.00 0.00 4.44
1809 9208 3.419759 CCGACGCTTTCCAACCGG 61.420 66.667 0.00 0.00 0.00 5.28
1810 9209 2.356553 CGACGCTTTCCAACCGGA 60.357 61.111 9.46 0.00 40.60 5.14
1851 9265 0.103026 TGCTGCAGCCAGTATCGTAG 59.897 55.000 34.64 0.00 41.26 3.51
1910 9326 4.498520 CTCGTGTGATCGCCGGCT 62.499 66.667 26.68 6.32 0.00 5.52
1946 9362 4.865865 GAATTCTCGAGCAGGGGG 57.134 61.111 7.81 0.00 0.00 5.40
1969 9385 1.201343 GGCATCGAACGAGAAGTAGC 58.799 55.000 2.94 0.79 0.00 3.58
2080 9536 9.360093 CGTCTAGAGACTTAATTTGAACTGATT 57.640 33.333 8.01 0.00 42.66 2.57
2214 9670 0.937699 GTTGCTCACTGCGACGTACA 60.938 55.000 0.00 0.00 45.05 2.90
2215 9671 0.663269 TTGCTCACTGCGACGTACAG 60.663 55.000 14.74 14.74 46.63 2.74
2226 9944 2.327081 GACGTACAGTCGAGCAAAGA 57.673 50.000 0.00 0.00 40.43 2.52
2229 9947 2.223641 ACGTACAGTCGAGCAAAGACAA 60.224 45.455 8.53 0.00 40.84 3.18
2235 9953 4.814234 ACAGTCGAGCAAAGACAAATTGTA 59.186 37.500 0.00 0.00 40.84 2.41
2236 9954 5.140177 CAGTCGAGCAAAGACAAATTGTAC 58.860 41.667 0.00 0.00 40.84 2.90
2351 10069 7.789273 ACAAAAATCATGAGCATGTTTTGAA 57.211 28.000 27.70 7.60 41.86 2.69
2443 10174 9.952188 GTAAATTTCTGGATGCTACCTTATTTC 57.048 33.333 0.00 0.00 0.00 2.17
2444 10175 8.829373 AAATTTCTGGATGCTACCTTATTTCT 57.171 30.769 0.00 0.00 0.00 2.52
2449 10180 8.055279 TCTGGATGCTACCTTATTTCTTTTTG 57.945 34.615 0.00 0.00 0.00 2.44
2450 10181 7.669722 TCTGGATGCTACCTTATTTCTTTTTGT 59.330 33.333 0.00 0.00 0.00 2.83
2451 10182 8.871629 TGGATGCTACCTTATTTCTTTTTGTA 57.128 30.769 0.00 0.00 0.00 2.41
2452 10183 9.303116 TGGATGCTACCTTATTTCTTTTTGTAA 57.697 29.630 0.00 0.00 0.00 2.41
2469 10200 9.929722 CTTTTTGTAAAATAGAAAAAGCAACCC 57.070 29.630 15.19 0.00 45.59 4.11
2470 10201 9.674068 TTTTTGTAAAATAGAAAAAGCAACCCT 57.326 25.926 2.23 0.00 36.42 4.34
2471 10202 8.880878 TTTGTAAAATAGAAAAAGCAACCCTC 57.119 30.769 0.00 0.00 0.00 4.30
2472 10203 6.674066 TGTAAAATAGAAAAAGCAACCCTCG 58.326 36.000 0.00 0.00 0.00 4.63
2473 10204 3.850122 AATAGAAAAAGCAACCCTCGC 57.150 42.857 0.00 0.00 0.00 5.03
2474 10205 2.264005 TAGAAAAAGCAACCCTCGCA 57.736 45.000 0.00 0.00 0.00 5.10
2475 10206 1.398692 AGAAAAAGCAACCCTCGCAA 58.601 45.000 0.00 0.00 0.00 4.85
2476 10207 1.754226 AGAAAAAGCAACCCTCGCAAA 59.246 42.857 0.00 0.00 0.00 3.68
2477 10208 2.167487 AGAAAAAGCAACCCTCGCAAAA 59.833 40.909 0.00 0.00 0.00 2.44
2478 10209 2.682155 AAAAGCAACCCTCGCAAAAA 57.318 40.000 0.00 0.00 0.00 1.94
2547 11747 4.278956 CGGCTACCGCAGAAAAGT 57.721 55.556 0.00 0.00 41.17 2.66
2548 11748 2.079049 CGGCTACCGCAGAAAAGTC 58.921 57.895 0.00 0.00 41.17 3.01
2549 11749 1.359459 CGGCTACCGCAGAAAAGTCC 61.359 60.000 0.00 0.00 41.17 3.85
2550 11750 1.025113 GGCTACCGCAGAAAAGTCCC 61.025 60.000 0.00 0.00 38.10 4.46
2551 11751 0.036294 GCTACCGCAGAAAAGTCCCT 60.036 55.000 0.00 0.00 35.78 4.20
2614 11877 6.007703 CCTGGTCTTTTAGTTAATGAACCCA 58.992 40.000 0.00 0.00 36.08 4.51
3036 12340 3.900941 TCTTTCTTTCGTACCGGTGTAC 58.099 45.455 19.93 7.51 43.24 2.90
3077 12383 6.215845 ACACATCAGCAAAATTAGTTTGGAC 58.784 36.000 7.25 0.00 45.79 4.02
3107 12413 8.701908 AAGAAATCATCTATAACCATGCATGT 57.298 30.769 24.58 10.36 37.42 3.21
3165 12477 6.024552 AGATTTCTCATCTTATCGGAGAGC 57.975 41.667 0.00 0.00 43.63 4.09
3200 12512 2.250031 AGAATTGGCCACATTCAAGCA 58.750 42.857 27.65 6.87 0.00 3.91
3222 12537 4.494350 AGTTGTGATTGTGAGCATTGAC 57.506 40.909 0.00 0.00 0.00 3.18
3259 12574 1.764854 GGGATGGAGGGTAAGCGGA 60.765 63.158 0.00 0.00 0.00 5.54
3262 12577 1.064979 GGATGGAGGGTAAGCGGAAAA 60.065 52.381 0.00 0.00 0.00 2.29
3397 12716 6.481954 ACATAATTATAAAGCGGCTACTGC 57.518 37.500 1.35 0.00 38.76 4.40
3403 12722 2.581354 AGCGGCTACTGCTTCTGG 59.419 61.111 0.00 0.00 40.48 3.86
3404 12723 3.198489 GCGGCTACTGCTTCTGGC 61.198 66.667 0.00 0.00 39.59 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153369 GCCGATGCCTCTGCTACAA 60.153 57.895 0.00 0.00 38.71 2.41
3 4 1.144716 CTTGCCGATGCCTCTGCTA 59.855 57.895 6.91 0.00 38.71 3.49
4 5 2.124819 CTTGCCGATGCCTCTGCT 60.125 61.111 6.91 0.00 38.71 4.24
5 6 2.437359 ACTTGCCGATGCCTCTGC 60.437 61.111 0.00 0.00 36.33 4.26
6 7 2.110967 CCACTTGCCGATGCCTCTG 61.111 63.158 0.00 0.00 36.33 3.35
7 8 2.270205 CCACTTGCCGATGCCTCT 59.730 61.111 0.00 0.00 36.33 3.69
8 9 2.825836 CCCACTTGCCGATGCCTC 60.826 66.667 0.00 0.00 36.33 4.70
9 10 4.431131 CCCCACTTGCCGATGCCT 62.431 66.667 0.00 0.00 36.33 4.75
18 19 4.641645 TGCTGTCGCCCCCACTTG 62.642 66.667 0.00 0.00 34.43 3.16
19 20 4.643387 GTGCTGTCGCCCCCACTT 62.643 66.667 0.00 0.00 34.43 3.16
31 32 1.446792 CTGTACTCCGCCTGTGCTG 60.447 63.158 0.00 0.00 34.43 4.41
32 33 1.599606 CTCTGTACTCCGCCTGTGCT 61.600 60.000 0.00 0.00 34.43 4.40
35 36 0.038455 AGACTCTGTACTCCGCCTGT 59.962 55.000 0.00 0.00 0.00 4.00
36 37 1.178276 AAGACTCTGTACTCCGCCTG 58.822 55.000 0.00 0.00 0.00 4.85
37 38 2.290768 TGTAAGACTCTGTACTCCGCCT 60.291 50.000 0.00 0.00 0.00 5.52
39 40 4.373348 AATGTAAGACTCTGTACTCCGC 57.627 45.455 0.00 0.00 0.00 5.54
40 41 5.950883 TGAAATGTAAGACTCTGTACTCCG 58.049 41.667 0.00 0.00 0.00 4.63
43 44 5.780793 ACCCTGAAATGTAAGACTCTGTACT 59.219 40.000 0.00 0.00 0.00 2.73
45 46 7.786046 TTACCCTGAAATGTAAGACTCTGTA 57.214 36.000 0.00 0.00 0.00 2.74
46 47 6.681729 TTACCCTGAAATGTAAGACTCTGT 57.318 37.500 0.00 0.00 0.00 3.41
47 48 7.979444 TTTTACCCTGAAATGTAAGACTCTG 57.021 36.000 0.00 0.00 0.00 3.35
48 49 8.218488 AGTTTTTACCCTGAAATGTAAGACTCT 58.782 33.333 0.00 0.00 0.00 3.24
49 50 8.392372 AGTTTTTACCCTGAAATGTAAGACTC 57.608 34.615 0.00 0.00 0.00 3.36
50 51 7.996644 TGAGTTTTTACCCTGAAATGTAAGACT 59.003 33.333 0.00 0.00 32.58 3.24
51 52 8.161699 TGAGTTTTTACCCTGAAATGTAAGAC 57.838 34.615 0.00 0.00 0.00 3.01
54 55 7.470841 GCCTTGAGTTTTTACCCTGAAATGTAA 60.471 37.037 0.00 0.00 0.00 2.41
55 56 6.015772 GCCTTGAGTTTTTACCCTGAAATGTA 60.016 38.462 0.00 0.00 0.00 2.29
56 57 5.221441 GCCTTGAGTTTTTACCCTGAAATGT 60.221 40.000 0.00 0.00 0.00 2.71
57 58 5.221422 TGCCTTGAGTTTTTACCCTGAAATG 60.221 40.000 0.00 0.00 0.00 2.32
58 59 4.898861 TGCCTTGAGTTTTTACCCTGAAAT 59.101 37.500 0.00 0.00 0.00 2.17
59 60 4.282496 TGCCTTGAGTTTTTACCCTGAAA 58.718 39.130 0.00 0.00 0.00 2.69
60 61 3.904717 TGCCTTGAGTTTTTACCCTGAA 58.095 40.909 0.00 0.00 0.00 3.02
62 63 3.056607 CCATGCCTTGAGTTTTTACCCTG 60.057 47.826 0.00 0.00 0.00 4.45
63 64 3.165071 CCATGCCTTGAGTTTTTACCCT 58.835 45.455 0.00 0.00 0.00 4.34
64 65 2.353704 GCCATGCCTTGAGTTTTTACCC 60.354 50.000 0.00 0.00 0.00 3.69
65 66 2.353704 GGCCATGCCTTGAGTTTTTACC 60.354 50.000 0.00 0.00 46.69 2.85
79 80 2.620242 CACAACCAATTAAGGCCATGC 58.380 47.619 5.01 0.00 0.00 4.06
80 81 2.620242 GCACAACCAATTAAGGCCATG 58.380 47.619 5.01 0.00 0.00 3.66
81 82 1.554617 GGCACAACCAATTAAGGCCAT 59.445 47.619 5.01 0.00 39.66 4.40
85 86 0.530288 CCGGGCACAACCAATTAAGG 59.470 55.000 0.00 0.00 42.05 2.69
86 87 1.253100 ACCGGGCACAACCAATTAAG 58.747 50.000 6.32 0.00 42.05 1.85
87 88 2.224818 ACTACCGGGCACAACCAATTAA 60.225 45.455 6.32 0.00 42.05 1.40
88 89 1.351683 ACTACCGGGCACAACCAATTA 59.648 47.619 6.32 0.00 42.05 1.40
89 90 0.111639 ACTACCGGGCACAACCAATT 59.888 50.000 6.32 0.00 42.05 2.32
90 91 0.985760 TACTACCGGGCACAACCAAT 59.014 50.000 6.32 0.00 42.05 3.16
91 92 0.763652 TTACTACCGGGCACAACCAA 59.236 50.000 6.32 0.00 42.05 3.67
92 93 0.035176 GTTACTACCGGGCACAACCA 59.965 55.000 6.32 0.00 42.05 3.67
94 95 2.845019 GGTTACTACCGGGCACAAC 58.155 57.895 6.32 4.50 34.01 3.32
113 114 7.147312 CACTCTCAAAATAATGCCTTCAACAA 58.853 34.615 0.00 0.00 0.00 2.83
114 115 6.680810 CACTCTCAAAATAATGCCTTCAACA 58.319 36.000 0.00 0.00 0.00 3.33
115 116 5.574443 GCACTCTCAAAATAATGCCTTCAAC 59.426 40.000 0.00 0.00 0.00 3.18
116 117 5.619757 CGCACTCTCAAAATAATGCCTTCAA 60.620 40.000 0.00 0.00 0.00 2.69
117 118 4.142622 CGCACTCTCAAAATAATGCCTTCA 60.143 41.667 0.00 0.00 0.00 3.02
119 120 3.129287 CCGCACTCTCAAAATAATGCCTT 59.871 43.478 0.00 0.00 0.00 4.35
120 121 2.684881 CCGCACTCTCAAAATAATGCCT 59.315 45.455 0.00 0.00 0.00 4.75
121 122 2.682856 TCCGCACTCTCAAAATAATGCC 59.317 45.455 0.00 0.00 0.00 4.40
122 123 4.274459 AGATCCGCACTCTCAAAATAATGC 59.726 41.667 0.00 0.00 0.00 3.56
123 124 5.998454 AGATCCGCACTCTCAAAATAATG 57.002 39.130 0.00 0.00 0.00 1.90
124 125 6.352516 AGAAGATCCGCACTCTCAAAATAAT 58.647 36.000 0.00 0.00 0.00 1.28
125 126 5.734720 AGAAGATCCGCACTCTCAAAATAA 58.265 37.500 0.00 0.00 0.00 1.40
126 127 5.127845 AGAGAAGATCCGCACTCTCAAAATA 59.872 40.000 0.00 0.00 35.19 1.40
127 128 4.081198 AGAGAAGATCCGCACTCTCAAAAT 60.081 41.667 0.00 0.00 35.19 1.82
128 129 3.259374 AGAGAAGATCCGCACTCTCAAAA 59.741 43.478 0.00 0.00 35.19 2.44
129 130 2.828520 AGAGAAGATCCGCACTCTCAAA 59.171 45.455 0.00 0.00 35.19 2.69
130 131 2.451490 AGAGAAGATCCGCACTCTCAA 58.549 47.619 0.00 0.00 35.19 3.02
131 132 2.136298 AGAGAAGATCCGCACTCTCA 57.864 50.000 0.00 0.00 35.19 3.27
132 133 2.552315 CCTAGAGAAGATCCGCACTCTC 59.448 54.545 10.37 5.48 39.81 3.20
133 134 2.582052 CCTAGAGAAGATCCGCACTCT 58.418 52.381 0.00 0.00 41.61 3.24
134 135 1.611491 CCCTAGAGAAGATCCGCACTC 59.389 57.143 0.00 0.00 0.00 3.51
135 136 1.063567 ACCCTAGAGAAGATCCGCACT 60.064 52.381 0.00 0.00 0.00 4.40
137 138 3.308035 TTACCCTAGAGAAGATCCGCA 57.692 47.619 0.00 0.00 0.00 5.69
140 141 9.990360 CTTAGATTTTTACCCTAGAGAAGATCC 57.010 37.037 0.00 0.00 0.00 3.36
154 155 9.827411 GCCCGATCATAAATCTTAGATTTTTAC 57.173 33.333 22.92 10.97 0.00 2.01
155 156 8.717821 CGCCCGATCATAAATCTTAGATTTTTA 58.282 33.333 22.92 8.78 0.00 1.52
156 157 7.444183 TCGCCCGATCATAAATCTTAGATTTTT 59.556 33.333 22.92 13.91 0.00 1.94
157 158 6.934645 TCGCCCGATCATAAATCTTAGATTTT 59.065 34.615 22.92 7.33 0.00 1.82
158 159 6.464222 TCGCCCGATCATAAATCTTAGATTT 58.536 36.000 21.70 21.70 0.00 2.17
159 160 6.037786 TCGCCCGATCATAAATCTTAGATT 57.962 37.500 0.99 0.99 0.00 2.40
161 162 5.185056 TCATCGCCCGATCATAAATCTTAGA 59.815 40.000 0.00 0.00 31.62 2.10
163 164 5.168569 GTCATCGCCCGATCATAAATCTTA 58.831 41.667 0.00 0.00 31.62 2.10
164 165 3.997021 GTCATCGCCCGATCATAAATCTT 59.003 43.478 0.00 0.00 31.62 2.40
165 166 3.589988 GTCATCGCCCGATCATAAATCT 58.410 45.455 0.00 0.00 31.62 2.40
166 167 2.345641 CGTCATCGCCCGATCATAAATC 59.654 50.000 0.00 0.00 31.62 2.17
167 168 2.337583 CGTCATCGCCCGATCATAAAT 58.662 47.619 0.00 0.00 31.62 1.40
168 169 1.604438 CCGTCATCGCCCGATCATAAA 60.604 52.381 0.00 0.00 35.54 1.40
170 171 1.176619 ACCGTCATCGCCCGATCATA 61.177 55.000 0.00 0.00 35.54 2.15
171 172 2.340078 CCGTCATCGCCCGATCAT 59.660 61.111 0.00 0.00 35.54 2.45
172 173 3.144871 ACCGTCATCGCCCGATCA 61.145 61.111 0.00 0.00 35.54 2.92
173 174 2.658593 CACCGTCATCGCCCGATC 60.659 66.667 0.00 0.00 35.54 3.69
174 175 4.891727 GCACCGTCATCGCCCGAT 62.892 66.667 0.00 0.00 35.54 4.18
178 179 2.742372 ACAAGCACCGTCATCGCC 60.742 61.111 0.00 0.00 35.54 5.54
179 180 2.476051 CACAAGCACCGTCATCGC 59.524 61.111 0.00 0.00 35.54 4.58
180 181 2.476051 GCACAAGCACCGTCATCG 59.524 61.111 0.00 0.00 41.58 3.84
189 190 8.450558 TTCAAGAAGAAAACACTGCACAAGCA 62.451 38.462 0.00 0.00 40.19 3.91
192 193 5.384063 TTCAAGAAGAAAACACTGCACAA 57.616 34.783 0.00 0.00 32.05 3.33
193 194 4.142403 CCTTCAAGAAGAAAACACTGCACA 60.142 41.667 11.25 0.00 40.79 4.57
194 195 4.354587 CCTTCAAGAAGAAAACACTGCAC 58.645 43.478 11.25 0.00 40.79 4.57
195 196 3.181487 GCCTTCAAGAAGAAAACACTGCA 60.181 43.478 11.25 0.00 40.79 4.41
196 197 3.375642 GCCTTCAAGAAGAAAACACTGC 58.624 45.455 11.25 0.31 40.79 4.40
198 199 3.279434 ACGCCTTCAAGAAGAAAACACT 58.721 40.909 11.25 0.00 40.79 3.55
200 201 3.064820 GTGACGCCTTCAAGAAGAAAACA 59.935 43.478 11.25 4.14 40.79 2.83
202 203 3.541632 AGTGACGCCTTCAAGAAGAAAA 58.458 40.909 11.25 0.00 40.79 2.29
203 204 3.194005 AGTGACGCCTTCAAGAAGAAA 57.806 42.857 11.25 0.00 40.79 2.52
204 205 2.910688 AGTGACGCCTTCAAGAAGAA 57.089 45.000 11.25 0.00 40.79 2.52
205 206 2.910688 AAGTGACGCCTTCAAGAAGA 57.089 45.000 11.25 0.00 40.79 2.87
206 207 3.548818 CCAAAAGTGACGCCTTCAAGAAG 60.549 47.826 2.83 2.83 35.39 2.85
207 208 2.357637 CCAAAAGTGACGCCTTCAAGAA 59.642 45.455 0.00 0.00 35.39 2.52
208 209 1.946768 CCAAAAGTGACGCCTTCAAGA 59.053 47.619 0.00 0.00 35.39 3.02
209 210 1.946768 TCCAAAAGTGACGCCTTCAAG 59.053 47.619 0.00 0.00 35.39 3.02
210 211 1.946768 CTCCAAAAGTGACGCCTTCAA 59.053 47.619 0.00 0.00 35.39 2.69
211 212 1.140052 TCTCCAAAAGTGACGCCTTCA 59.860 47.619 0.00 0.00 0.00 3.02
212 213 1.878953 TCTCCAAAAGTGACGCCTTC 58.121 50.000 0.00 0.00 0.00 3.46
213 214 2.341846 TTCTCCAAAAGTGACGCCTT 57.658 45.000 0.00 0.00 0.00 4.35
214 215 2.568623 ATTCTCCAAAAGTGACGCCT 57.431 45.000 0.00 0.00 0.00 5.52
216 217 4.223320 TCAAATTCTCCAAAAGTGACGC 57.777 40.909 0.00 0.00 0.00 5.19
217 218 5.821204 AGTTCAAATTCTCCAAAAGTGACG 58.179 37.500 0.00 0.00 0.00 4.35
218 219 6.414987 CGAAGTTCAAATTCTCCAAAAGTGAC 59.585 38.462 3.32 0.00 0.00 3.67
219 220 6.459573 CCGAAGTTCAAATTCTCCAAAAGTGA 60.460 38.462 3.32 0.00 0.00 3.41
220 221 5.687285 CCGAAGTTCAAATTCTCCAAAAGTG 59.313 40.000 3.32 0.00 0.00 3.16
221 222 5.221244 CCCGAAGTTCAAATTCTCCAAAAGT 60.221 40.000 3.32 0.00 0.00 2.66
223 224 4.647399 ACCCGAAGTTCAAATTCTCCAAAA 59.353 37.500 3.32 0.00 0.00 2.44
224 225 4.037446 CACCCGAAGTTCAAATTCTCCAAA 59.963 41.667 3.32 0.00 0.00 3.28
225 226 3.568007 CACCCGAAGTTCAAATTCTCCAA 59.432 43.478 3.32 0.00 0.00 3.53
227 228 3.146847 ACACCCGAAGTTCAAATTCTCC 58.853 45.455 3.32 0.00 0.00 3.71
228 229 4.036380 ACAACACCCGAAGTTCAAATTCTC 59.964 41.667 3.32 0.00 0.00 2.87
229 230 3.951680 ACAACACCCGAAGTTCAAATTCT 59.048 39.130 3.32 0.00 0.00 2.40
232 233 3.551846 AGACAACACCCGAAGTTCAAAT 58.448 40.909 3.32 0.00 0.00 2.32
233 234 2.993937 AGACAACACCCGAAGTTCAAA 58.006 42.857 3.32 0.00 0.00 2.69
234 235 2.702592 AGACAACACCCGAAGTTCAA 57.297 45.000 3.32 0.00 0.00 2.69
235 236 2.036733 CCTAGACAACACCCGAAGTTCA 59.963 50.000 3.32 0.00 0.00 3.18
239 240 1.616865 TCACCTAGACAACACCCGAAG 59.383 52.381 0.00 0.00 0.00 3.79
240 241 1.707106 TCACCTAGACAACACCCGAA 58.293 50.000 0.00 0.00 0.00 4.30
241 242 1.548719 CATCACCTAGACAACACCCGA 59.451 52.381 0.00 0.00 0.00 5.14
242 243 1.405526 CCATCACCTAGACAACACCCG 60.406 57.143 0.00 0.00 0.00 5.28
244 245 3.335579 GAACCATCACCTAGACAACACC 58.664 50.000 0.00 0.00 0.00 4.16
246 247 2.631062 ACGAACCATCACCTAGACAACA 59.369 45.455 0.00 0.00 0.00 3.33
247 248 2.993899 CACGAACCATCACCTAGACAAC 59.006 50.000 0.00 0.00 0.00 3.32
248 249 2.631062 ACACGAACCATCACCTAGACAA 59.369 45.455 0.00 0.00 0.00 3.18
249 250 2.244695 ACACGAACCATCACCTAGACA 58.755 47.619 0.00 0.00 0.00 3.41
250 251 2.993899 CAACACGAACCATCACCTAGAC 59.006 50.000 0.00 0.00 0.00 2.59
251 252 2.631062 ACAACACGAACCATCACCTAGA 59.369 45.455 0.00 0.00 0.00 2.43
252 253 2.736721 CACAACACGAACCATCACCTAG 59.263 50.000 0.00 0.00 0.00 3.02
253 254 2.549134 CCACAACACGAACCATCACCTA 60.549 50.000 0.00 0.00 0.00 3.08
254 255 1.593196 CACAACACGAACCATCACCT 58.407 50.000 0.00 0.00 0.00 4.00
256 257 1.305201 ACCACAACACGAACCATCAC 58.695 50.000 0.00 0.00 0.00 3.06
257 258 2.045561 AACCACAACACGAACCATCA 57.954 45.000 0.00 0.00 0.00 3.07
258 259 2.873472 TGTAACCACAACACGAACCATC 59.127 45.455 0.00 0.00 0.00 3.51
259 260 2.920524 TGTAACCACAACACGAACCAT 58.079 42.857 0.00 0.00 0.00 3.55
260 261 2.398252 TGTAACCACAACACGAACCA 57.602 45.000 0.00 0.00 0.00 3.67
261 262 2.032426 CCTTGTAACCACAACACGAACC 59.968 50.000 0.00 0.00 39.75 3.62
262 263 2.937799 TCCTTGTAACCACAACACGAAC 59.062 45.455 0.00 0.00 39.75 3.95
263 264 3.263489 TCCTTGTAACCACAACACGAA 57.737 42.857 0.00 0.00 39.75 3.85
264 265 2.983907 TCCTTGTAACCACAACACGA 57.016 45.000 0.00 0.00 39.75 4.35
265 266 4.035792 TCAATTCCTTGTAACCACAACACG 59.964 41.667 0.00 0.00 39.75 4.49
267 268 5.830457 TGATCAATTCCTTGTAACCACAACA 59.170 36.000 0.00 0.00 39.75 3.33
268 269 6.016276 AGTGATCAATTCCTTGTAACCACAAC 60.016 38.462 0.00 0.00 39.75 3.32
269 270 6.068010 AGTGATCAATTCCTTGTAACCACAA 58.932 36.000 0.00 0.00 42.39 3.33
270 271 5.630121 AGTGATCAATTCCTTGTAACCACA 58.370 37.500 0.00 0.00 33.87 4.17
272 273 6.374333 GCTAAGTGATCAATTCCTTGTAACCA 59.626 38.462 12.35 0.00 33.87 3.67
274 275 6.312918 TCGCTAAGTGATCAATTCCTTGTAAC 59.687 38.462 12.35 0.00 33.87 2.50
275 276 6.403049 TCGCTAAGTGATCAATTCCTTGTAA 58.597 36.000 12.35 0.00 33.87 2.41
276 277 5.972935 TCGCTAAGTGATCAATTCCTTGTA 58.027 37.500 12.35 0.00 33.87 2.41
277 278 4.832248 TCGCTAAGTGATCAATTCCTTGT 58.168 39.130 12.35 0.00 33.87 3.16
279 280 5.344743 TCTCGCTAAGTGATCAATTCCTT 57.655 39.130 12.35 6.60 0.00 3.36
280 281 5.304101 AGATCTCGCTAAGTGATCAATTCCT 59.696 40.000 12.35 0.00 46.69 3.36
282 283 7.437862 AGAAAGATCTCGCTAAGTGATCAATTC 59.562 37.037 12.35 0.00 46.69 2.17
283 284 7.271511 AGAAAGATCTCGCTAAGTGATCAATT 58.728 34.615 13.58 13.58 46.69 2.32
284 285 6.815089 AGAAAGATCTCGCTAAGTGATCAAT 58.185 36.000 0.00 0.00 46.69 2.57
285 286 6.214191 AGAAAGATCTCGCTAAGTGATCAA 57.786 37.500 0.00 0.00 46.69 2.57
286 287 5.843673 AGAAAGATCTCGCTAAGTGATCA 57.156 39.130 0.00 0.00 46.69 2.92
288 289 8.874816 GTTAAAAGAAAGATCTCGCTAAGTGAT 58.125 33.333 0.00 0.00 33.77 3.06
289 290 8.088981 AGTTAAAAGAAAGATCTCGCTAAGTGA 58.911 33.333 0.00 0.00 33.77 3.41
291 292 8.088981 TGAGTTAAAAGAAAGATCTCGCTAAGT 58.911 33.333 0.00 0.00 33.77 2.24
292 293 8.467402 TGAGTTAAAAGAAAGATCTCGCTAAG 57.533 34.615 0.00 0.00 33.77 2.18
293 294 9.088512 GATGAGTTAAAAGAAAGATCTCGCTAA 57.911 33.333 0.00 0.00 33.77 3.09
294 295 8.470805 AGATGAGTTAAAAGAAAGATCTCGCTA 58.529 33.333 0.00 0.00 33.77 4.26
295 296 7.327214 AGATGAGTTAAAAGAAAGATCTCGCT 58.673 34.615 0.00 0.00 33.77 4.93
305 306 9.877178 GAGACCAATCTAGATGAGTTAAAAGAA 57.123 33.333 5.86 0.00 34.34 2.52
306 307 9.035890 TGAGACCAATCTAGATGAGTTAAAAGA 57.964 33.333 5.86 0.00 34.34 2.52
307 308 9.829507 ATGAGACCAATCTAGATGAGTTAAAAG 57.170 33.333 5.86 0.00 34.34 2.27
309 310 9.823647 GAATGAGACCAATCTAGATGAGTTAAA 57.176 33.333 5.86 0.00 34.34 1.52
310 311 8.981659 TGAATGAGACCAATCTAGATGAGTTAA 58.018 33.333 5.86 0.00 34.34 2.01
311 312 8.417106 GTGAATGAGACCAATCTAGATGAGTTA 58.583 37.037 5.86 0.00 34.34 2.24
312 313 7.271511 GTGAATGAGACCAATCTAGATGAGTT 58.728 38.462 5.86 0.00 34.34 3.01
313 314 6.183360 GGTGAATGAGACCAATCTAGATGAGT 60.183 42.308 5.86 6.80 34.34 3.41
314 315 6.041865 AGGTGAATGAGACCAATCTAGATGAG 59.958 42.308 5.86 3.34 34.34 2.90
315 316 5.901853 AGGTGAATGAGACCAATCTAGATGA 59.098 40.000 5.86 0.00 34.34 2.92
316 317 6.172136 AGGTGAATGAGACCAATCTAGATG 57.828 41.667 5.86 0.00 34.34 2.90
317 318 6.821616 AAGGTGAATGAGACCAATCTAGAT 57.178 37.500 0.00 0.00 34.34 1.98
319 320 8.970859 ATAAAAGGTGAATGAGACCAATCTAG 57.029 34.615 0.00 0.00 34.34 2.43
321 322 7.500559 GCTATAAAAGGTGAATGAGACCAATCT 59.499 37.037 0.00 0.00 38.15 2.40
323 324 6.547510 GGCTATAAAAGGTGAATGAGACCAAT 59.452 38.462 0.00 0.00 35.76 3.16
324 325 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
325 326 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
327 328 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
328 329 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
330 331 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
331 332 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
332 333 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
333 334 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
334 335 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
335 336 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
337 338 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
338 339 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
339 340 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
340 341 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
341 342 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
342 343 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
343 344 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
344 345 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
345 346 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
346 347 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
348 349 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
349 350 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
350 351 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
351 352 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
352 353 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
353 354 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
355 356 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
358 359 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
359 360 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
360 361 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
361 362 2.205074 AGCACACACGCATCTTATAGC 58.795 47.619 0.00 0.00 0.00 2.97
363 364 4.116961 GGTTAGCACACACGCATCTTATA 58.883 43.478 0.00 0.00 0.00 0.98
364 365 2.936498 GGTTAGCACACACGCATCTTAT 59.064 45.455 0.00 0.00 0.00 1.73
365 366 2.028476 AGGTTAGCACACACGCATCTTA 60.028 45.455 0.00 0.00 0.00 2.10
366 367 1.156736 GGTTAGCACACACGCATCTT 58.843 50.000 0.00 0.00 0.00 2.40
367 368 0.321671 AGGTTAGCACACACGCATCT 59.678 50.000 0.00 0.00 0.00 2.90
368 369 0.443869 CAGGTTAGCACACACGCATC 59.556 55.000 0.00 0.00 0.00 3.91
369 370 0.955428 CCAGGTTAGCACACACGCAT 60.955 55.000 0.00 0.00 0.00 4.73
370 371 1.596752 CCAGGTTAGCACACACGCA 60.597 57.895 0.00 0.00 0.00 5.24
371 372 0.673644 ATCCAGGTTAGCACACACGC 60.674 55.000 0.00 0.00 0.00 5.34
372 373 1.808411 AATCCAGGTTAGCACACACG 58.192 50.000 0.00 0.00 0.00 4.49
373 374 5.648092 AGATAAAATCCAGGTTAGCACACAC 59.352 40.000 0.00 0.00 0.00 3.82
374 375 5.647658 CAGATAAAATCCAGGTTAGCACACA 59.352 40.000 0.00 0.00 0.00 3.72
375 376 5.648092 ACAGATAAAATCCAGGTTAGCACAC 59.352 40.000 0.00 0.00 0.00 3.82
376 377 5.815581 ACAGATAAAATCCAGGTTAGCACA 58.184 37.500 0.00 0.00 0.00 4.57
412 413 6.042666 TGAGATATAATTCGGTCCCATTCACA 59.957 38.462 0.00 0.00 0.00 3.58
413 414 6.464222 TGAGATATAATTCGGTCCCATTCAC 58.536 40.000 0.00 0.00 0.00 3.18
414 415 6.680148 TGAGATATAATTCGGTCCCATTCA 57.320 37.500 0.00 0.00 0.00 2.57
415 416 8.567285 AAATGAGATATAATTCGGTCCCATTC 57.433 34.615 0.00 0.00 0.00 2.67
416 417 9.672673 CTAAATGAGATATAATTCGGTCCCATT 57.327 33.333 0.00 0.00 0.00 3.16
417 418 9.046846 TCTAAATGAGATATAATTCGGTCCCAT 57.953 33.333 0.00 0.00 0.00 4.00
418 419 8.430573 TCTAAATGAGATATAATTCGGTCCCA 57.569 34.615 0.00 0.00 0.00 4.37
435 436 7.506261 GGGAGTACCTAGAACTCATCTAAATGA 59.494 40.741 20.28 0.00 44.25 2.57
437 438 7.842887 GGGAGTACCTAGAACTCATCTAAAT 57.157 40.000 20.28 0.00 44.25 1.40
467 468 9.904198 AAAATGAAGAAGAAGGGAAAATGAAAA 57.096 25.926 0.00 0.00 0.00 2.29
468 469 9.904198 AAAAATGAAGAAGAAGGGAAAATGAAA 57.096 25.926 0.00 0.00 0.00 2.69
469 470 9.328845 CAAAAATGAAGAAGAAGGGAAAATGAA 57.671 29.630 0.00 0.00 0.00 2.57
470 471 8.485392 ACAAAAATGAAGAAGAAGGGAAAATGA 58.515 29.630 0.00 0.00 0.00 2.57
471 472 8.667076 ACAAAAATGAAGAAGAAGGGAAAATG 57.333 30.769 0.00 0.00 0.00 2.32
472 473 9.685276 AAACAAAAATGAAGAAGAAGGGAAAAT 57.315 25.926 0.00 0.00 0.00 1.82
473 474 9.513906 AAAACAAAAATGAAGAAGAAGGGAAAA 57.486 25.926 0.00 0.00 0.00 2.29
474 475 9.513906 AAAAACAAAAATGAAGAAGAAGGGAAA 57.486 25.926 0.00 0.00 0.00 3.13
498 499 3.883830 ACAGATGCACACAACCAAAAA 57.116 38.095 0.00 0.00 0.00 1.94
500 501 4.340666 ACATTACAGATGCACACAACCAAA 59.659 37.500 0.00 0.00 0.00 3.28
501 502 3.888323 ACATTACAGATGCACACAACCAA 59.112 39.130 0.00 0.00 0.00 3.67
502 503 3.485394 ACATTACAGATGCACACAACCA 58.515 40.909 0.00 0.00 0.00 3.67
503 504 3.753272 AGACATTACAGATGCACACAACC 59.247 43.478 0.00 0.00 0.00 3.77
505 506 6.484977 TGTAAAGACATTACAGATGCACACAA 59.515 34.615 0.00 0.00 46.88 3.33
506 507 5.994668 TGTAAAGACATTACAGATGCACACA 59.005 36.000 0.00 0.00 46.88 3.72
517 518 7.021196 ACAACGCAATGATGTAAAGACATTAC 58.979 34.615 0.00 0.00 46.64 1.89
518 519 7.139896 ACAACGCAATGATGTAAAGACATTA 57.860 32.000 0.00 0.00 46.64 1.90
519 520 6.012658 ACAACGCAATGATGTAAAGACATT 57.987 33.333 0.00 0.00 46.64 2.71
520 521 9.799664 TGCAACAACGCAATGATGTAAAGACAT 62.800 37.037 0.00 0.00 43.47 3.06
521 522 5.211454 CAACAACGCAATGATGTAAAGACA 58.789 37.500 0.00 0.00 40.72 3.41
522 523 4.088496 GCAACAACGCAATGATGTAAAGAC 59.912 41.667 0.00 0.00 31.56 3.01
523 524 4.225984 GCAACAACGCAATGATGTAAAGA 58.774 39.130 0.00 0.00 31.56 2.52
524 525 3.980134 TGCAACAACGCAATGATGTAAAG 59.020 39.130 0.00 0.00 39.45 1.85
525 526 3.969899 TGCAACAACGCAATGATGTAAA 58.030 36.364 0.00 0.00 39.45 2.01
526 527 3.632855 TGCAACAACGCAATGATGTAA 57.367 38.095 0.00 0.00 39.45 2.41
527 528 3.632855 TTGCAACAACGCAATGATGTA 57.367 38.095 0.00 0.00 46.61 2.29
528 529 2.505628 TTGCAACAACGCAATGATGT 57.494 40.000 0.00 0.00 46.61 3.06
535 536 1.226916 CAGCCTTTGCAACAACGCA 60.227 52.632 0.00 0.00 41.13 5.24
536 537 1.226945 ACAGCCTTTGCAACAACGC 60.227 52.632 0.00 0.00 41.13 4.84
537 538 0.179140 ACACAGCCTTTGCAACAACG 60.179 50.000 0.00 0.00 41.13 4.10
538 539 1.280066 CACACAGCCTTTGCAACAAC 58.720 50.000 0.00 0.00 41.13 3.32
539 540 0.894141 ACACACAGCCTTTGCAACAA 59.106 45.000 0.00 0.00 41.13 2.83
540 541 1.756430 TACACACAGCCTTTGCAACA 58.244 45.000 0.00 0.00 41.13 3.33
542 543 3.382865 TCAATTACACACAGCCTTTGCAA 59.617 39.130 0.00 0.00 41.13 4.08
543 544 2.954989 TCAATTACACACAGCCTTTGCA 59.045 40.909 0.00 0.00 41.13 4.08
544 545 3.641437 TCAATTACACACAGCCTTTGC 57.359 42.857 0.00 0.00 37.95 3.68
545 546 7.281774 AGAGATATCAATTACACACAGCCTTTG 59.718 37.037 5.32 0.00 0.00 2.77
546 547 7.281774 CAGAGATATCAATTACACACAGCCTTT 59.718 37.037 5.32 0.00 0.00 3.11
548 549 6.286758 CAGAGATATCAATTACACACAGCCT 58.713 40.000 5.32 0.00 0.00 4.58
549 550 5.049818 GCAGAGATATCAATTACACACAGCC 60.050 44.000 5.32 0.00 0.00 4.85
550 551 5.525012 TGCAGAGATATCAATTACACACAGC 59.475 40.000 5.32 0.00 0.00 4.40
551 552 7.543947 TTGCAGAGATATCAATTACACACAG 57.456 36.000 5.32 0.00 0.00 3.66
552 553 9.783081 ATATTGCAGAGATATCAATTACACACA 57.217 29.630 5.32 0.00 33.13 3.72
607 608 3.560668 GGGTAGAGGGTCGGAATGTTTTT 60.561 47.826 0.00 0.00 0.00 1.94
608 609 2.026542 GGGTAGAGGGTCGGAATGTTTT 60.027 50.000 0.00 0.00 0.00 2.43
609 610 1.558294 GGGTAGAGGGTCGGAATGTTT 59.442 52.381 0.00 0.00 0.00 2.83
610 611 1.201424 GGGTAGAGGGTCGGAATGTT 58.799 55.000 0.00 0.00 0.00 2.71
611 612 1.041447 CGGGTAGAGGGTCGGAATGT 61.041 60.000 0.00 0.00 0.00 2.71
612 613 1.740285 CGGGTAGAGGGTCGGAATG 59.260 63.158 0.00 0.00 0.00 2.67
613 614 2.132352 GCGGGTAGAGGGTCGGAAT 61.132 63.158 0.00 0.00 0.00 3.01
614 615 2.757099 GCGGGTAGAGGGTCGGAA 60.757 66.667 0.00 0.00 0.00 4.30
617 618 0.320946 TTTTTGCGGGTAGAGGGTCG 60.321 55.000 0.00 0.00 0.00 4.79
618 619 3.637184 TTTTTGCGGGTAGAGGGTC 57.363 52.632 0.00 0.00 0.00 4.46
684 685 0.608130 TGACCAACTAGCTGCGTCAT 59.392 50.000 11.22 0.00 0.00 3.06
758 759 5.293324 TCGTACTGCCATTAATTAGCACTTG 59.707 40.000 5.93 1.12 32.06 3.16
761 762 4.025145 GGTCGTACTGCCATTAATTAGCAC 60.025 45.833 5.93 0.00 32.06 4.40
762 763 4.124238 GGTCGTACTGCCATTAATTAGCA 58.876 43.478 9.09 9.09 34.79 3.49
763 764 3.183775 CGGTCGTACTGCCATTAATTAGC 59.816 47.826 1.03 1.03 0.00 3.09
764 765 3.183775 GCGGTCGTACTGCCATTAATTAG 59.816 47.826 7.36 0.00 44.50 1.73
900 952 1.156736 CGCCATTTTGACCGAAGACT 58.843 50.000 0.00 0.00 0.00 3.24
929 993 2.741228 GCTAAGCACAGATCCTGACAGG 60.741 54.545 15.99 15.99 35.18 4.00
931 995 1.134995 CGCTAAGCACAGATCCTGACA 60.135 52.381 0.45 0.00 35.18 3.58
932 996 1.565305 CGCTAAGCACAGATCCTGAC 58.435 55.000 0.45 0.00 35.18 3.51
981 1045 2.426023 GGTGGCGACAGTGGAAGT 59.574 61.111 0.00 0.00 44.46 3.01
1067 1156 4.821589 GGGCCTCGGTTCAGCGAG 62.822 72.222 19.18 19.18 0.00 5.03
1082 4456 4.489771 GTGTCCTCCATGCCCGGG 62.490 72.222 19.09 19.09 0.00 5.73
1370 8718 2.453638 GCCGTACTTTCGCCAGCTC 61.454 63.158 0.00 0.00 0.00 4.09
1379 8727 1.053424 TGTCCTTCTGGCCGTACTTT 58.947 50.000 0.00 0.00 0.00 2.66
1511 8859 1.226745 CGCGCCGTGGTAGATAACA 60.227 57.895 0.00 0.00 0.00 2.41
1514 8862 3.519930 TGCGCGCCGTGGTAGATA 61.520 61.111 30.77 1.61 0.00 1.98
1579 8948 3.082701 GGCTCTCCTGCTCCTGCT 61.083 66.667 0.00 0.00 40.48 4.24
1609 8990 2.285368 ACTGAATCCCCTCCGGCA 60.285 61.111 0.00 0.00 0.00 5.69
1676 9066 1.682684 CACGGAGGGGTAGCAGTCT 60.683 63.158 0.00 0.00 0.00 3.24
1760 9156 1.046472 ACCACTCGTCCAGTTGACCA 61.046 55.000 0.00 0.00 41.18 4.02
1761 9157 0.106149 AACCACTCGTCCAGTTGACC 59.894 55.000 0.00 0.00 41.18 4.02
1797 9196 0.536460 TGAACCTCCGGTTGGAAAGC 60.536 55.000 19.97 8.53 46.95 3.51
1798 9197 1.071699 TCTGAACCTCCGGTTGGAAAG 59.928 52.381 19.97 13.82 46.95 2.62
1799 9198 1.133363 TCTGAACCTCCGGTTGGAAA 58.867 50.000 19.97 6.66 46.95 3.13
1800 9199 1.133363 TTCTGAACCTCCGGTTGGAA 58.867 50.000 19.97 5.13 46.95 3.53
1801 9200 0.395312 GTTCTGAACCTCCGGTTGGA 59.605 55.000 19.97 0.00 46.95 3.53
1802 9201 0.605589 GGTTCTGAACCTCCGGTTGG 60.606 60.000 28.07 13.29 46.95 3.77
1803 9202 2.928416 GGTTCTGAACCTCCGGTTG 58.072 57.895 28.07 0.00 46.95 3.77
1851 9265 3.928211 CAGTGCTGCGAATACAATACAC 58.072 45.455 0.00 0.00 0.00 2.90
1910 9326 1.827315 CGGCACTTTCGTTCGCTCAA 61.827 55.000 0.00 0.00 0.00 3.02
1946 9362 1.475441 CTTCTCGTTCGATGCCGCTC 61.475 60.000 0.00 0.00 35.37 5.03
1969 9385 7.382218 GTTCAATAACTTGTCCAATTGGACTTG 59.618 37.037 42.47 36.05 46.40 3.16
2080 9536 1.552799 TTTCTCTCGCCATGGCTGGA 61.553 55.000 33.07 26.49 46.37 3.86
2101 9557 4.281688 CCCTTGATGTTGATGGTTCAGTTT 59.718 41.667 0.00 0.00 32.27 2.66
2152 9608 6.757010 ACGTTGATGTACTCTCATATTTGTCC 59.243 38.462 0.00 0.00 0.00 4.02
2194 9650 1.372499 TACGTCGCAGTGAGCAACC 60.372 57.895 0.00 0.00 46.13 3.77
2214 9670 4.084537 CGTACAATTTGTCTTTGCTCGACT 60.085 41.667 5.07 0.00 32.70 4.18
2215 9671 4.141680 CGTACAATTTGTCTTTGCTCGAC 58.858 43.478 5.07 0.00 0.00 4.20
2216 9672 3.185594 CCGTACAATTTGTCTTTGCTCGA 59.814 43.478 5.07 0.00 0.00 4.04
2218 9674 3.252458 ACCCGTACAATTTGTCTTTGCTC 59.748 43.478 5.07 0.00 0.00 4.26
2219 9675 3.004315 CACCCGTACAATTTGTCTTTGCT 59.996 43.478 5.07 0.00 0.00 3.91
2220 9676 3.243267 ACACCCGTACAATTTGTCTTTGC 60.243 43.478 5.07 0.00 0.00 3.68
2221 9677 4.561735 ACACCCGTACAATTTGTCTTTG 57.438 40.909 5.07 0.91 0.00 2.77
2320 10038 9.715121 AACATGCTCATGATTTTTGTAAATTCT 57.285 25.926 15.96 0.00 41.20 2.40
2411 10129 9.125026 AGGTAGCATCCAGAAATTTACAATTAG 57.875 33.333 0.00 0.00 0.00 1.73
2425 10156 7.830739 ACAAAAAGAAATAAGGTAGCATCCAG 58.169 34.615 0.00 0.00 0.00 3.86
2443 10174 9.929722 GGGTTGCTTTTTCTATTTTACAAAAAG 57.070 29.630 10.42 10.42 44.57 2.27
2444 10175 9.674068 AGGGTTGCTTTTTCTATTTTACAAAAA 57.326 25.926 0.00 0.00 0.00 1.94
2449 10180 5.571741 GCGAGGGTTGCTTTTTCTATTTTAC 59.428 40.000 0.00 0.00 0.00 2.01
2450 10181 5.241949 TGCGAGGGTTGCTTTTTCTATTTTA 59.758 36.000 0.00 0.00 0.00 1.52
2451 10182 4.038642 TGCGAGGGTTGCTTTTTCTATTTT 59.961 37.500 0.00 0.00 0.00 1.82
2452 10183 3.572255 TGCGAGGGTTGCTTTTTCTATTT 59.428 39.130 0.00 0.00 0.00 1.40
2453 10184 3.153919 TGCGAGGGTTGCTTTTTCTATT 58.846 40.909 0.00 0.00 0.00 1.73
2454 10185 2.790433 TGCGAGGGTTGCTTTTTCTAT 58.210 42.857 0.00 0.00 0.00 1.98
2455 10186 2.264005 TGCGAGGGTTGCTTTTTCTA 57.736 45.000 0.00 0.00 0.00 2.10
2456 10187 1.398692 TTGCGAGGGTTGCTTTTTCT 58.601 45.000 0.00 0.00 0.00 2.52
2457 10188 2.217429 TTTGCGAGGGTTGCTTTTTC 57.783 45.000 0.00 0.00 0.00 2.29
2458 10189 2.682155 TTTTGCGAGGGTTGCTTTTT 57.318 40.000 0.00 0.00 0.00 1.94
2459 10190 2.682155 TTTTTGCGAGGGTTGCTTTT 57.318 40.000 0.00 0.00 0.00 2.27
2506 10237 9.307121 CCGCTTTATGATCATAGGTAAAGATAG 57.693 37.037 23.70 16.07 36.66 2.08
2508 10239 6.595716 GCCGCTTTATGATCATAGGTAAAGAT 59.404 38.462 23.70 0.00 36.66 2.40
2548 11748 5.560722 ACCATTTTCCCACTTAAAAAGGG 57.439 39.130 9.08 9.08 46.46 3.95
2549 11749 6.826668 AGAACCATTTTCCCACTTAAAAAGG 58.173 36.000 0.00 0.00 39.44 3.11
2550 11750 8.731275 AAAGAACCATTTTCCCACTTAAAAAG 57.269 30.769 0.00 0.00 30.20 2.27
2551 11751 9.521841 AAAAAGAACCATTTTCCCACTTAAAAA 57.478 25.926 0.00 0.00 31.25 1.94
2614 11877 8.852135 TCATTTTTCACTTAAATTTAGGACCGT 58.148 29.630 13.73 0.00 0.00 4.83
3036 12340 5.353956 TGATGTGTTGATTTCTAACCCGATG 59.646 40.000 0.00 0.00 0.00 3.84
3077 12383 9.674824 GCATGGTTATAGATGATTTCTTTCTTG 57.325 33.333 0.00 0.00 35.79 3.02
3101 12407 3.936453 GGTTTTACCGAGTCATACATGCA 59.064 43.478 0.00 0.00 0.00 3.96
3107 12413 3.449737 CCTGGAGGTTTTACCGAGTCATA 59.550 47.826 0.00 0.00 44.90 2.15
3165 12477 4.633565 GCCAATTCTAAGGTGTCTCTCTTG 59.366 45.833 0.00 0.00 0.00 3.02
3200 12512 4.555313 CGTCAATGCTCACAATCACAACTT 60.555 41.667 0.00 0.00 0.00 2.66
3259 12574 3.381272 CCACGTGCATCCCATCTATTTTT 59.619 43.478 10.91 0.00 0.00 1.94
3262 12577 1.768275 TCCACGTGCATCCCATCTATT 59.232 47.619 10.91 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.