Multiple sequence alignment - TraesCS1B01G438900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G438900 chr1B 100.000 3695 0 0 1 3695 660893904 660897598 0.000000e+00 6824.0
1 TraesCS1B01G438900 chr1B 95.670 2240 73 13 1006 3230 660459919 660462149 0.000000e+00 3578.0
2 TraesCS1B01G438900 chr1B 78.226 1883 300 65 1120 2937 660524260 660526097 0.000000e+00 1105.0
3 TraesCS1B01G438900 chr1B 78.874 1581 257 46 1122 2650 677306241 677304686 0.000000e+00 998.0
4 TraesCS1B01G438900 chr1B 89.107 459 19 8 499 926 660459041 660459499 3.250000e-150 542.0
5 TraesCS1B01G438900 chr1B 98.120 266 5 0 1 266 660458745 660459010 7.230000e-127 464.0
6 TraesCS1B01G438900 chr1B 88.432 389 29 8 2743 3126 660684653 660685030 4.350000e-124 455.0
7 TraesCS1B01G438900 chr1B 88.432 389 30 7 2743 3126 660723647 660724025 4.350000e-124 455.0
8 TraesCS1B01G438900 chr1B 89.634 328 32 2 3136 3462 661051819 661052145 2.050000e-112 416.0
9 TraesCS1B01G438900 chr1B 90.345 290 17 4 3168 3456 660681083 660681362 1.620000e-98 370.0
10 TraesCS1B01G438900 chr1B 88.699 292 22 8 2842 3126 661059682 661059969 2.730000e-91 346.0
11 TraesCS1B01G438900 chr1B 84.774 243 28 8 3461 3695 660681397 660681638 6.170000e-58 235.0
12 TraesCS1B01G438900 chr1B 84.232 241 24 6 3461 3695 660796343 660796575 4.800000e-54 222.0
13 TraesCS1B01G438900 chr1B 91.667 156 5 2 3342 3490 660912220 660912374 3.740000e-50 209.0
14 TraesCS1B01G438900 chr1B 81.203 266 34 11 2812 3065 660567839 660568100 2.250000e-47 200.0
15 TraesCS1B01G438900 chr1B 78.756 193 24 8 2891 3079 660458283 660458462 3.020000e-21 113.0
16 TraesCS1B01G438900 chr1B 82.353 119 21 0 1127 1245 113516574 113516456 1.820000e-18 104.0
17 TraesCS1B01G438900 chr1B 85.577 104 6 2 3459 3561 660462803 660462898 2.350000e-17 100.0
18 TraesCS1B01G438900 chr1B 100.000 29 0 0 3016 3044 561867025 561867053 2.000000e-03 54.7
19 TraesCS1B01G438900 chr1A 79.093 1588 243 55 1123 2650 583991140 583989582 0.000000e+00 1011.0
20 TraesCS1B01G438900 chr1A 78.669 1458 259 38 1120 2548 570787937 570786503 0.000000e+00 922.0
21 TraesCS1B01G438900 chr1A 78.178 1361 262 29 1120 2459 567988672 567987326 0.000000e+00 835.0
22 TraesCS1B01G438900 chr1A 93.151 292 18 2 3166 3456 570858737 570859027 9.480000e-116 427.0
23 TraesCS1B01G438900 chr1A 90.260 308 20 7 2824 3126 570862686 570862988 9.620000e-106 394.0
24 TraesCS1B01G438900 chr1A 86.008 243 25 7 3461 3695 570859062 570859303 6.130000e-63 252.0
25 TraesCS1B01G438900 chr1A 84.507 71 7 4 2569 2637 567987182 567987114 2.380000e-07 67.6
26 TraesCS1B01G438900 chr1D 79.259 1538 245 44 1120 2607 486334230 486332717 0.000000e+00 1005.0
27 TraesCS1B01G438900 chr1D 78.376 1355 265 21 1122 2459 473623548 473622205 0.000000e+00 854.0
28 TraesCS1B01G438900 chr1D 92.708 288 19 2 3170 3456 475174963 475175249 7.380000e-112 414.0
29 TraesCS1B01G438900 chr1D 100.000 60 0 0 316 375 327238557 327238616 1.080000e-20 111.0
30 TraesCS1B01G438900 chr1D 89.535 86 7 2 3461 3545 475175284 475175368 1.400000e-19 108.0
31 TraesCS1B01G438900 chrUn 100.000 60 0 0 316 375 43672073 43672014 1.080000e-20 111.0
32 TraesCS1B01G438900 chrUn 100.000 60 0 0 316 375 441243691 441243632 1.080000e-20 111.0
33 TraesCS1B01G438900 chr6D 100.000 60 0 0 316 375 173308410 173308469 1.080000e-20 111.0
34 TraesCS1B01G438900 chr6D 100.000 60 0 0 316 375 389247035 389246976 1.080000e-20 111.0
35 TraesCS1B01G438900 chr5D 100.000 60 0 0 316 375 503244059 503244118 1.080000e-20 111.0
36 TraesCS1B01G438900 chr5D 100.000 60 0 0 316 375 503266516 503266457 1.080000e-20 111.0
37 TraesCS1B01G438900 chr5D 100.000 60 0 0 316 375 523018134 523018075 1.080000e-20 111.0
38 TraesCS1B01G438900 chr3D 100.000 60 0 0 316 375 589264736 589264677 1.080000e-20 111.0
39 TraesCS1B01G438900 chr3A 78.846 156 23 6 2492 2637 35846500 35846655 3.040000e-16 97.1
40 TraesCS1B01G438900 chr2A 96.970 33 1 0 2403 2435 37954153 37954185 5.160000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G438900 chr1B 660893904 660897598 3694 False 6824.000000 6824 100.000000 1 3695 1 chr1B.!!$F6 3694
1 TraesCS1B01G438900 chr1B 660524260 660526097 1837 False 1105.000000 1105 78.226000 1120 2937 1 chr1B.!!$F2 1817
2 TraesCS1B01G438900 chr1B 677304686 677306241 1555 True 998.000000 998 78.874000 1122 2650 1 chr1B.!!$R2 1528
3 TraesCS1B01G438900 chr1B 660458283 660462898 4615 False 959.400000 3578 89.446000 1 3561 5 chr1B.!!$F10 3560
4 TraesCS1B01G438900 chr1B 660681083 660685030 3947 False 353.333333 455 87.850333 2743 3695 3 chr1B.!!$F11 952
5 TraesCS1B01G438900 chr1A 583989582 583991140 1558 True 1011.000000 1011 79.093000 1123 2650 1 chr1A.!!$R2 1527
6 TraesCS1B01G438900 chr1A 570786503 570787937 1434 True 922.000000 922 78.669000 1120 2548 1 chr1A.!!$R1 1428
7 TraesCS1B01G438900 chr1A 567987114 567988672 1558 True 451.300000 835 81.342500 1120 2637 2 chr1A.!!$R3 1517
8 TraesCS1B01G438900 chr1A 570858737 570862988 4251 False 357.666667 427 89.806333 2824 3695 3 chr1A.!!$F1 871
9 TraesCS1B01G438900 chr1D 486332717 486334230 1513 True 1005.000000 1005 79.259000 1120 2607 1 chr1D.!!$R2 1487
10 TraesCS1B01G438900 chr1D 473622205 473623548 1343 True 854.000000 854 78.376000 1122 2459 1 chr1D.!!$R1 1337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
965 1459 0.530744 TCTCGTACCACATCACTGCC 59.469 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2772 3720 0.033109 CCCCCTCAATCCTGGTTTCC 60.033 60.0 0.0 0.0 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 501 2.027192 TCTGGTTAGACAACTCCATGGC 60.027 50.000 6.96 0.00 34.88 4.40
202 665 4.253685 GTGTGCTGATTTCTGTAAGCCTA 58.746 43.478 0.00 0.00 34.70 3.93
218 681 9.679661 CTGTAAGCCTATCTATCTGAATCTCTA 57.320 37.037 0.00 0.00 0.00 2.43
253 716 8.398665 GCAAGTACTTTGGTGAATATTTCTAGG 58.601 37.037 5.07 0.00 37.26 3.02
266 729 9.561069 TGAATATTTCTAGGAATTACAGGAAGC 57.439 33.333 0.40 0.00 0.00 3.86
267 730 9.561069 GAATATTTCTAGGAATTACAGGAAGCA 57.439 33.333 0.40 0.00 0.00 3.91
268 731 9.566432 AATATTTCTAGGAATTACAGGAAGCAG 57.434 33.333 0.40 0.00 0.00 4.24
270 733 5.599999 TCTAGGAATTACAGGAAGCAGTC 57.400 43.478 0.00 0.00 0.00 3.51
271 734 5.273208 TCTAGGAATTACAGGAAGCAGTCT 58.727 41.667 0.00 0.00 0.00 3.24
272 735 6.432581 TCTAGGAATTACAGGAAGCAGTCTA 58.567 40.000 0.00 0.00 0.00 2.59
273 736 5.606348 AGGAATTACAGGAAGCAGTCTAG 57.394 43.478 0.00 0.00 0.00 2.43
274 737 4.123506 GGAATTACAGGAAGCAGTCTAGC 58.876 47.826 0.00 0.00 0.00 3.42
278 741 3.374042 ACAGGAAGCAGTCTAGCTCTA 57.626 47.619 0.00 0.00 45.89 2.43
279 742 3.287222 ACAGGAAGCAGTCTAGCTCTAG 58.713 50.000 0.00 0.00 45.89 2.43
281 744 3.315191 CAGGAAGCAGTCTAGCTCTAGTC 59.685 52.174 0.00 0.00 45.89 2.59
282 745 3.053991 AGGAAGCAGTCTAGCTCTAGTCA 60.054 47.826 0.00 0.00 45.89 3.41
284 747 4.202010 GGAAGCAGTCTAGCTCTAGTCAAG 60.202 50.000 0.00 0.00 45.89 3.02
285 748 2.687935 AGCAGTCTAGCTCTAGTCAAGC 59.312 50.000 0.00 7.02 42.18 4.01
304 767 2.836981 AGCTCTAGCACTCTGGTGAAAT 59.163 45.455 4.54 0.00 45.61 2.17
316 779 1.879380 TGGTGAAATGTGTGCAGTAGC 59.121 47.619 0.00 0.00 42.57 3.58
319 782 3.125316 GGTGAAATGTGTGCAGTAGCTAC 59.875 47.826 16.43 16.43 42.74 3.58
321 784 4.213270 GTGAAATGTGTGCAGTAGCTACAA 59.787 41.667 25.28 8.15 40.19 2.41
322 785 5.003160 TGAAATGTGTGCAGTAGCTACAAT 58.997 37.500 25.28 3.04 40.19 2.71
323 786 4.952262 AATGTGTGCAGTAGCTACAATG 57.048 40.909 25.28 16.41 40.19 2.82
324 787 2.698803 TGTGTGCAGTAGCTACAATGG 58.301 47.619 25.28 12.53 42.74 3.16
325 788 2.009774 GTGTGCAGTAGCTACAATGGG 58.990 52.381 25.28 10.23 42.74 4.00
326 789 1.017387 GTGCAGTAGCTACAATGGGC 58.983 55.000 25.28 18.61 42.74 5.36
328 791 1.160329 GCAGTAGCTACAATGGGCGG 61.160 60.000 25.28 5.73 37.91 6.13
329 792 0.532862 CAGTAGCTACAATGGGCGGG 60.533 60.000 25.28 0.33 0.00 6.13
330 793 0.689745 AGTAGCTACAATGGGCGGGA 60.690 55.000 25.28 0.00 0.00 5.14
331 794 0.532196 GTAGCTACAATGGGCGGGAC 60.532 60.000 19.15 0.00 0.00 4.46
332 795 0.978667 TAGCTACAATGGGCGGGACA 60.979 55.000 0.00 0.00 0.00 4.02
333 796 1.377987 GCTACAATGGGCGGGACAA 60.378 57.895 0.00 0.00 0.00 3.18
335 798 1.094785 CTACAATGGGCGGGACAAAG 58.905 55.000 0.00 0.00 0.00 2.77
337 800 2.037208 AATGGGCGGGACAAAGGG 59.963 61.111 0.00 0.00 0.00 3.95
339 802 2.781431 AATGGGCGGGACAAAGGGTC 62.781 60.000 0.00 0.00 46.20 4.46
346 809 4.913126 GACAAAGGGTCGCGATCT 57.087 55.556 20.42 13.95 36.65 2.75
347 810 2.666989 GACAAAGGGTCGCGATCTC 58.333 57.895 20.42 9.88 36.65 2.75
348 811 1.140407 GACAAAGGGTCGCGATCTCG 61.140 60.000 20.42 13.19 38.48 4.04
362 825 3.197614 CTCGCGAGGGTGAGCTAA 58.802 61.111 28.40 0.00 43.25 3.09
363 826 1.226717 CTCGCGAGGGTGAGCTAAC 60.227 63.158 28.40 0.00 43.25 2.34
364 827 1.658686 CTCGCGAGGGTGAGCTAACT 61.659 60.000 28.40 0.00 43.25 2.24
365 828 1.226717 CGCGAGGGTGAGCTAACTC 60.227 63.158 0.00 0.00 43.76 3.01
366 829 1.142097 GCGAGGGTGAGCTAACTCC 59.858 63.158 0.00 0.00 42.74 3.85
369 832 1.275291 CGAGGGTGAGCTAACTCCAAA 59.725 52.381 0.00 0.00 42.74 3.28
370 833 2.289444 CGAGGGTGAGCTAACTCCAAAA 60.289 50.000 0.00 0.00 42.74 2.44
372 835 3.487372 AGGGTGAGCTAACTCCAAAAAC 58.513 45.455 0.00 0.00 42.74 2.43
375 838 3.487372 GTGAGCTAACTCCAAAAACCCT 58.513 45.455 0.00 0.00 42.74 4.34
377 840 5.254115 GTGAGCTAACTCCAAAAACCCTAT 58.746 41.667 0.00 0.00 42.74 2.57
378 841 5.123979 GTGAGCTAACTCCAAAAACCCTATG 59.876 44.000 0.00 0.00 42.74 2.23
379 842 4.600062 AGCTAACTCCAAAAACCCTATGG 58.400 43.478 0.00 0.00 35.49 2.74
380 843 3.130516 GCTAACTCCAAAAACCCTATGGC 59.869 47.826 0.00 0.00 34.13 4.40
381 844 2.990740 ACTCCAAAAACCCTATGGCA 57.009 45.000 0.00 0.00 34.13 4.92
382 845 3.473113 ACTCCAAAAACCCTATGGCAT 57.527 42.857 4.88 4.88 34.13 4.40
384 847 4.941713 ACTCCAAAAACCCTATGGCATTA 58.058 39.130 4.78 0.00 34.13 1.90
385 848 5.337788 ACTCCAAAAACCCTATGGCATTAA 58.662 37.500 4.78 0.00 34.13 1.40
386 849 5.782845 ACTCCAAAAACCCTATGGCATTAAA 59.217 36.000 4.78 0.00 34.13 1.52
387 850 6.271159 ACTCCAAAAACCCTATGGCATTAAAA 59.729 34.615 4.78 0.00 34.13 1.52
389 852 8.380742 TCCAAAAACCCTATGGCATTAAAATA 57.619 30.769 4.78 0.00 34.13 1.40
390 853 8.261522 TCCAAAAACCCTATGGCATTAAAATAC 58.738 33.333 4.78 0.00 34.13 1.89
392 855 9.612066 CAAAAACCCTATGGCATTAAAATACAT 57.388 29.630 4.78 0.00 33.59 2.29
393 856 9.612066 AAAAACCCTATGGCATTAAAATACATG 57.388 29.630 4.78 0.00 33.59 3.21
394 857 6.916360 ACCCTATGGCATTAAAATACATGG 57.084 37.500 4.78 0.00 33.59 3.66
395 858 6.619464 ACCCTATGGCATTAAAATACATGGA 58.381 36.000 4.78 0.00 33.59 3.41
396 859 6.721208 ACCCTATGGCATTAAAATACATGGAG 59.279 38.462 4.78 0.00 33.59 3.86
397 860 6.153340 CCCTATGGCATTAAAATACATGGAGG 59.847 42.308 4.78 0.86 0.00 4.30
398 861 6.721208 CCTATGGCATTAAAATACATGGAGGT 59.279 38.462 4.78 0.00 0.00 3.85
399 862 6.655078 ATGGCATTAAAATACATGGAGGTC 57.345 37.500 0.00 0.00 0.00 3.85
400 863 5.514169 TGGCATTAAAATACATGGAGGTCA 58.486 37.500 0.00 0.00 0.00 4.02
401 864 6.135454 TGGCATTAAAATACATGGAGGTCAT 58.865 36.000 0.00 0.00 36.31 3.06
408 871 3.526211 CATGGAGGTCATGCCCAAT 57.474 52.632 0.00 0.00 45.58 3.16
410 873 1.133575 CATGGAGGTCATGCCCAATCT 60.134 52.381 0.00 0.00 45.58 2.40
411 874 1.002069 TGGAGGTCATGCCCAATCTT 58.998 50.000 0.00 0.00 38.26 2.40
412 875 1.358787 TGGAGGTCATGCCCAATCTTT 59.641 47.619 0.00 0.00 38.26 2.52
413 876 2.225343 TGGAGGTCATGCCCAATCTTTT 60.225 45.455 0.00 0.00 38.26 2.27
414 877 2.833943 GGAGGTCATGCCCAATCTTTTT 59.166 45.455 0.00 0.00 38.26 1.94
440 903 7.698506 AACAAATCTGATGATGTGATGAAGT 57.301 32.000 9.33 0.00 39.67 3.01
441 904 7.698506 ACAAATCTGATGATGTGATGAAGTT 57.301 32.000 8.14 0.00 39.67 2.66
442 905 8.118976 ACAAATCTGATGATGTGATGAAGTTT 57.881 30.769 8.14 0.00 39.67 2.66
443 906 8.027189 ACAAATCTGATGATGTGATGAAGTTTG 58.973 33.333 8.14 0.00 39.67 2.93
444 907 7.698506 AATCTGATGATGTGATGAAGTTTGT 57.301 32.000 0.00 0.00 32.44 2.83
445 908 6.490566 TCTGATGATGTGATGAAGTTTGTG 57.509 37.500 0.00 0.00 0.00 3.33
447 910 6.148315 TCTGATGATGTGATGAAGTTTGTGTC 59.852 38.462 0.00 0.00 0.00 3.67
448 911 5.999600 TGATGATGTGATGAAGTTTGTGTCT 59.000 36.000 0.00 0.00 0.00 3.41
451 914 5.589855 TGATGTGATGAAGTTTGTGTCTGTT 59.410 36.000 0.00 0.00 0.00 3.16
452 915 5.895636 TGTGATGAAGTTTGTGTCTGTTT 57.104 34.783 0.00 0.00 0.00 2.83
454 917 6.686630 TGTGATGAAGTTTGTGTCTGTTTTT 58.313 32.000 0.00 0.00 0.00 1.94
480 943 9.829507 TTGAATTAAAATTTGTTCTGTGGATGT 57.170 25.926 0.00 0.00 0.00 3.06
481 944 9.258826 TGAATTAAAATTTGTTCTGTGGATGTG 57.741 29.630 0.00 0.00 0.00 3.21
485 948 9.906660 TTAAAATTTGTTCTGTGGATGTGATAC 57.093 29.630 0.00 0.00 0.00 2.24
486 949 6.515272 AATTTGTTCTGTGGATGTGATACC 57.485 37.500 0.00 0.00 0.00 2.73
487 950 4.632327 TTGTTCTGTGGATGTGATACCA 57.368 40.909 0.00 0.00 0.00 3.25
693 1156 5.640147 ACTTGGTGTCAAATAGGGATGAAA 58.360 37.500 0.00 0.00 31.77 2.69
749 1212 4.912586 TCTAGGGTCGAATAGGATCTCTG 58.087 47.826 0.00 0.00 0.00 3.35
766 1229 4.352893 TCTCTGTCTCTCTCTCTCTCTCA 58.647 47.826 0.00 0.00 0.00 3.27
836 1330 4.202663 CCCCTCTCTCTCTCTCATATTCCA 60.203 50.000 0.00 0.00 0.00 3.53
843 1337 6.814043 TCTCTCTCTCATATTCCATTGTGTG 58.186 40.000 0.00 0.00 0.00 3.82
863 1357 4.057432 GTGAAGCAAGCCAGATCTAGATC 58.943 47.826 22.92 22.92 38.09 2.75
883 1377 1.202770 CCCCGTTCCCCAATCTCATAC 60.203 57.143 0.00 0.00 0.00 2.39
894 1388 4.453478 CCCAATCTCATACCACATCATTCG 59.547 45.833 0.00 0.00 0.00 3.34
908 1402 7.134815 CCACATCATTCGTTCATATTCCTTTC 58.865 38.462 0.00 0.00 0.00 2.62
928 1422 7.667219 TCCTTTCTGTGAAAGCAAAATAGATCT 59.333 33.333 12.92 0.00 0.00 2.75
930 1424 9.985318 CTTTCTGTGAAAGCAAAATAGATCTAG 57.015 33.333 8.70 0.00 0.00 2.43
931 1425 9.725019 TTTCTGTGAAAGCAAAATAGATCTAGA 57.275 29.630 8.70 0.00 0.00 2.43
932 1426 9.896645 TTCTGTGAAAGCAAAATAGATCTAGAT 57.103 29.630 4.47 4.47 0.00 1.98
933 1427 9.539825 TCTGTGAAAGCAAAATAGATCTAGATC 57.460 33.333 22.92 22.92 38.09 2.75
935 1429 7.716998 TGTGAAAGCAAAATAGATCTAGATCCC 59.283 37.037 25.88 6.23 38.58 3.85
936 1430 7.936301 GTGAAAGCAAAATAGATCTAGATCCCT 59.064 37.037 25.88 13.33 38.58 4.20
937 1431 9.159254 TGAAAGCAAAATAGATCTAGATCCCTA 57.841 33.333 25.88 14.94 38.58 3.53
941 1435 8.767436 AGCAAAATAGATCTAGATCCCTATTCC 58.233 37.037 25.88 15.49 38.58 3.01
942 1436 8.767436 GCAAAATAGATCTAGATCCCTATTCCT 58.233 37.037 25.88 13.26 38.58 3.36
944 1438 8.760980 AAATAGATCTAGATCCCTATTCCTCG 57.239 38.462 25.88 0.00 38.58 4.63
945 1439 7.699709 ATAGATCTAGATCCCTATTCCTCGA 57.300 40.000 25.88 0.00 38.58 4.04
946 1440 6.590656 AGATCTAGATCCCTATTCCTCGAT 57.409 41.667 25.88 3.13 38.58 3.59
947 1441 6.601332 AGATCTAGATCCCTATTCCTCGATC 58.399 44.000 25.88 0.28 38.58 3.69
948 1442 6.389869 AGATCTAGATCCCTATTCCTCGATCT 59.610 42.308 25.88 2.63 43.00 2.75
949 1443 5.996644 TCTAGATCCCTATTCCTCGATCTC 58.003 45.833 1.87 0.00 40.42 2.75
952 1446 4.225492 AGATCCCTATTCCTCGATCTCGTA 59.775 45.833 0.00 0.00 37.50 3.43
953 1447 3.672808 TCCCTATTCCTCGATCTCGTAC 58.327 50.000 0.00 0.00 40.80 3.67
954 1448 2.748532 CCCTATTCCTCGATCTCGTACC 59.251 54.545 0.00 0.00 40.80 3.34
955 1449 3.409570 CCTATTCCTCGATCTCGTACCA 58.590 50.000 0.00 0.00 40.80 3.25
956 1450 3.188873 CCTATTCCTCGATCTCGTACCAC 59.811 52.174 0.00 0.00 40.80 4.16
958 1452 2.343484 TCCTCGATCTCGTACCACAT 57.657 50.000 0.00 0.00 40.80 3.21
959 1453 2.219458 TCCTCGATCTCGTACCACATC 58.781 52.381 0.00 0.00 40.80 3.06
960 1454 1.947456 CCTCGATCTCGTACCACATCA 59.053 52.381 0.00 0.00 40.80 3.07
961 1455 2.287069 CCTCGATCTCGTACCACATCAC 60.287 54.545 0.00 0.00 40.80 3.06
963 1457 2.354821 TCGATCTCGTACCACATCACTG 59.645 50.000 0.00 0.00 40.80 3.66
964 1458 2.464865 GATCTCGTACCACATCACTGC 58.535 52.381 0.00 0.00 0.00 4.40
965 1459 0.530744 TCTCGTACCACATCACTGCC 59.469 55.000 0.00 0.00 0.00 4.85
968 1462 0.796312 CGTACCACATCACTGCCAAC 59.204 55.000 0.00 0.00 0.00 3.77
969 1463 1.165270 GTACCACATCACTGCCAACC 58.835 55.000 0.00 0.00 0.00 3.77
970 1464 1.064003 TACCACATCACTGCCAACCT 58.936 50.000 0.00 0.00 0.00 3.50
972 1466 1.423541 ACCACATCACTGCCAACCTAA 59.576 47.619 0.00 0.00 0.00 2.69
973 1467 2.158534 ACCACATCACTGCCAACCTAAA 60.159 45.455 0.00 0.00 0.00 1.85
974 1468 2.890311 CCACATCACTGCCAACCTAAAA 59.110 45.455 0.00 0.00 0.00 1.52
975 1469 3.511146 CCACATCACTGCCAACCTAAAAT 59.489 43.478 0.00 0.00 0.00 1.82
976 1470 4.380867 CCACATCACTGCCAACCTAAAATC 60.381 45.833 0.00 0.00 0.00 2.17
977 1471 4.460382 CACATCACTGCCAACCTAAAATCT 59.540 41.667 0.00 0.00 0.00 2.40
978 1472 5.047802 CACATCACTGCCAACCTAAAATCTT 60.048 40.000 0.00 0.00 0.00 2.40
979 1473 5.183904 ACATCACTGCCAACCTAAAATCTTC 59.816 40.000 0.00 0.00 0.00 2.87
981 1475 4.082125 CACTGCCAACCTAAAATCTTCCT 58.918 43.478 0.00 0.00 0.00 3.36
983 1477 4.767409 ACTGCCAACCTAAAATCTTCCTTC 59.233 41.667 0.00 0.00 0.00 3.46
984 1478 4.998051 TGCCAACCTAAAATCTTCCTTCT 58.002 39.130 0.00 0.00 0.00 2.85
985 1479 5.393866 TGCCAACCTAAAATCTTCCTTCTT 58.606 37.500 0.00 0.00 0.00 2.52
986 1480 5.243730 TGCCAACCTAAAATCTTCCTTCTTG 59.756 40.000 0.00 0.00 0.00 3.02
987 1481 5.714047 CCAACCTAAAATCTTCCTTCTTGC 58.286 41.667 0.00 0.00 0.00 4.01
988 1482 5.243730 CCAACCTAAAATCTTCCTTCTTGCA 59.756 40.000 0.00 0.00 0.00 4.08
989 1483 6.239289 CCAACCTAAAATCTTCCTTCTTGCAA 60.239 38.462 0.00 0.00 0.00 4.08
990 1484 6.581171 ACCTAAAATCTTCCTTCTTGCAAG 57.419 37.500 20.81 20.81 0.00 4.01
991 1485 6.071320 ACCTAAAATCTTCCTTCTTGCAAGT 58.929 36.000 25.19 4.78 0.00 3.16
992 1486 6.015940 ACCTAAAATCTTCCTTCTTGCAAGTG 60.016 38.462 25.19 18.18 0.00 3.16
993 1487 5.859205 AAAATCTTCCTTCTTGCAAGTGT 57.141 34.783 25.19 0.00 0.00 3.55
994 1488 5.859205 AAATCTTCCTTCTTGCAAGTGTT 57.141 34.783 25.19 7.53 0.00 3.32
995 1489 5.444663 AATCTTCCTTCTTGCAAGTGTTC 57.555 39.130 25.19 0.00 0.00 3.18
996 1490 2.872245 TCTTCCTTCTTGCAAGTGTTCG 59.128 45.455 25.19 11.21 0.00 3.95
998 1492 2.210116 TCCTTCTTGCAAGTGTTCGAC 58.790 47.619 25.19 0.00 0.00 4.20
999 1493 1.264288 CCTTCTTGCAAGTGTTCGACC 59.736 52.381 25.19 0.00 0.00 4.79
1002 1496 1.872952 TCTTGCAAGTGTTCGACCATG 59.127 47.619 25.19 0.00 0.00 3.66
1003 1497 0.950836 TTGCAAGTGTTCGACCATGG 59.049 50.000 11.19 11.19 0.00 3.66
1004 1498 0.107643 TGCAAGTGTTCGACCATGGA 59.892 50.000 21.47 0.00 0.00 3.41
1050 1884 1.841302 TTCGTGCTCCCAAGAGGCAT 61.841 55.000 0.00 0.00 40.79 4.40
1269 2103 2.348998 CCTCTCAACCTTGGCGCT 59.651 61.111 7.64 0.00 0.00 5.92
1289 2123 6.132056 GCGCTGATAATAATCTTTGTGACAG 58.868 40.000 0.00 0.00 32.93 3.51
1517 2360 2.972505 CTTCGCGCCCACACTGTT 60.973 61.111 0.00 0.00 0.00 3.16
1555 2404 4.759205 GCCAATTCCCCGGCCTGT 62.759 66.667 0.00 0.00 42.82 4.00
1907 2765 3.898123 TCTGAAGGCATATCTACACTCCC 59.102 47.826 0.00 0.00 0.00 4.30
2198 3083 6.434596 TGTCAAAACATTATGGTTTCAGACG 58.565 36.000 16.19 3.66 42.44 4.18
2208 3093 7.997107 TTATGGTTTCAGACGTATGATGTAC 57.003 36.000 14.51 11.98 0.00 2.90
2211 3096 5.041940 GGTTTCAGACGTATGATGTACTCC 58.958 45.833 14.51 6.84 0.00 3.85
2320 3218 7.445096 TGAATATTGTGCGGAAGTATGATCAAT 59.555 33.333 0.00 0.00 0.00 2.57
2391 3289 5.864418 AGAATTACTGCGGTGGTTATAGA 57.136 39.130 8.92 0.00 0.00 1.98
2529 3451 3.005684 AGAATAGAGCCTCTCAAGATGCG 59.994 47.826 0.00 0.00 40.03 4.73
2695 3643 2.368548 TGCCTTTGCTTGTCTGTCTAGA 59.631 45.455 0.00 0.00 38.71 2.43
2704 3652 4.261825 GCTTGTCTGTCTAGAGTTGTCACT 60.262 45.833 0.00 0.00 32.48 3.41
2773 3721 3.462021 GCTTTGTCAGCCACTATAGAGG 58.538 50.000 11.58 11.58 43.65 3.69
2774 3722 3.133003 GCTTTGTCAGCCACTATAGAGGA 59.867 47.826 19.30 0.00 43.65 3.71
2775 3723 4.383118 GCTTTGTCAGCCACTATAGAGGAA 60.383 45.833 19.30 2.22 43.65 3.36
2777 3725 4.737855 TGTCAGCCACTATAGAGGAAAC 57.262 45.455 19.30 12.85 0.00 2.78
2778 3726 3.451178 TGTCAGCCACTATAGAGGAAACC 59.549 47.826 19.30 2.35 0.00 3.27
2779 3727 3.451178 GTCAGCCACTATAGAGGAAACCA 59.549 47.826 19.30 0.00 0.00 3.67
2780 3728 3.706594 TCAGCCACTATAGAGGAAACCAG 59.293 47.826 19.30 0.00 0.00 4.00
2781 3729 3.041946 AGCCACTATAGAGGAAACCAGG 58.958 50.000 19.30 2.52 0.00 4.45
2783 3731 3.648545 GCCACTATAGAGGAAACCAGGAT 59.351 47.826 19.30 0.00 0.00 3.24
2784 3732 4.103311 GCCACTATAGAGGAAACCAGGATT 59.897 45.833 19.30 0.00 0.00 3.01
2787 3735 6.463614 CCACTATAGAGGAAACCAGGATTGAG 60.464 46.154 10.50 0.00 0.00 3.02
2788 3736 5.604650 ACTATAGAGGAAACCAGGATTGAGG 59.395 44.000 6.78 0.00 0.00 3.86
2789 3737 1.918957 AGAGGAAACCAGGATTGAGGG 59.081 52.381 0.00 0.00 0.00 4.30
2792 3740 0.704664 GAAACCAGGATTGAGGGGGT 59.295 55.000 0.00 0.00 0.00 4.95
2823 3771 3.673323 GCCCAAGCCAAAGATTAAAGTCG 60.673 47.826 0.00 0.00 0.00 4.18
3025 4298 8.823220 AGTATAAGGTTTATTTCCTTGCATGT 57.177 30.769 7.37 0.00 43.95 3.21
3099 4380 1.079405 GCGTACTAGCTGCACCCAA 60.079 57.895 1.02 0.00 0.00 4.12
3141 4422 8.844244 GTCAAGAATGTCTGCCTGATATAAATT 58.156 33.333 0.00 0.00 0.00 1.82
3144 4425 8.388484 AGAATGTCTGCCTGATATAAATTGTC 57.612 34.615 0.00 0.00 0.00 3.18
3146 4427 7.741027 ATGTCTGCCTGATATAAATTGTCTG 57.259 36.000 0.00 0.00 0.00 3.51
3167 4448 6.860023 GTCTGATTCCTTTGTGTTGATTTCTG 59.140 38.462 0.00 0.00 0.00 3.02
3192 4473 5.867903 AGTTGGTCTATCAGAATCTCTGG 57.132 43.478 3.92 0.00 44.39 3.86
3224 4505 8.388103 CCGTAAGTACTTTGGTGAATATTTCTG 58.612 37.037 14.49 0.00 0.00 3.02
3230 4511 7.797121 ACTTTGGTGAATATTTCTGGGATTT 57.203 32.000 0.00 0.00 0.00 2.17
3232 4513 9.492730 ACTTTGGTGAATATTTCTGGGATTTAT 57.507 29.630 0.00 0.00 0.00 1.40
3247 4528 8.260818 TCTGGGATTTATATGAAGCAGTATAGC 58.739 37.037 0.00 0.00 0.00 2.97
3304 4992 6.899393 TTCTAGGTTTGTTTGCATGATTCT 57.101 33.333 0.00 0.00 0.00 2.40
3316 5004 4.740268 TGCATGATTCTTTCATTCACTGC 58.260 39.130 0.00 0.00 42.62 4.40
3318 5006 4.142227 GCATGATTCTTTCATTCACTGCCT 60.142 41.667 0.00 0.00 42.62 4.75
3331 5019 4.715534 TCACTGCCTAGCTCTAGTCTAT 57.284 45.455 0.00 0.00 0.00 1.98
3336 5024 6.488683 CACTGCCTAGCTCTAGTCTATTAACT 59.511 42.308 0.00 0.00 0.00 2.24
3338 5026 8.219178 ACTGCCTAGCTCTAGTCTATTAACTAA 58.781 37.037 0.00 0.00 31.56 2.24
3355 5043 0.320421 TAACACTTGAGGGTCAGCGC 60.320 55.000 0.00 0.00 0.00 5.92
3362 5050 4.112341 AGGGTCAGCGCGTACGAC 62.112 66.667 21.65 10.22 43.93 4.34
3394 5082 1.469703 CACGAAAGCTGATCATGGCAA 59.530 47.619 9.38 0.00 0.00 4.52
3396 5084 2.557924 ACGAAAGCTGATCATGGCAAAA 59.442 40.909 9.38 0.00 0.00 2.44
3398 5086 3.518590 GAAAGCTGATCATGGCAAAAGG 58.481 45.455 9.38 0.00 0.00 3.11
3423 5111 6.662414 TGGCGATATGTAGTTTCTTGAAAG 57.338 37.500 0.00 0.00 0.00 2.62
3432 5120 4.152284 AGTTTCTTGAAAGGGACGAACT 57.848 40.909 0.00 0.00 0.00 3.01
3441 5129 3.790089 AAGGGACGAACTCAATTTCCT 57.210 42.857 0.00 0.00 0.00 3.36
3449 5137 4.273480 ACGAACTCAATTTCCTGAACAGTG 59.727 41.667 0.00 0.00 0.00 3.66
3482 5206 2.039818 ACTGGAGATGAGCATGCAAG 57.960 50.000 21.98 6.32 0.00 4.01
3491 5215 3.066190 GCATGCAAGCTCCAGGCA 61.066 61.111 14.21 10.91 44.79 4.75
3503 5227 2.362369 CCAGGCAGAGGACGGTGAT 61.362 63.158 0.00 0.00 0.00 3.06
3509 5233 1.137872 GCAGAGGACGGTGATGAAGAT 59.862 52.381 0.00 0.00 0.00 2.40
3510 5234 2.819115 CAGAGGACGGTGATGAAGATG 58.181 52.381 0.00 0.00 0.00 2.90
3511 5235 2.167281 CAGAGGACGGTGATGAAGATGT 59.833 50.000 0.00 0.00 0.00 3.06
3512 5236 3.381590 CAGAGGACGGTGATGAAGATGTA 59.618 47.826 0.00 0.00 0.00 2.29
3513 5237 4.038522 CAGAGGACGGTGATGAAGATGTAT 59.961 45.833 0.00 0.00 0.00 2.29
3514 5238 4.651503 AGAGGACGGTGATGAAGATGTATT 59.348 41.667 0.00 0.00 0.00 1.89
3515 5239 4.950050 AGGACGGTGATGAAGATGTATTC 58.050 43.478 0.00 0.00 0.00 1.75
3516 5240 4.058817 GGACGGTGATGAAGATGTATTCC 58.941 47.826 0.00 0.00 0.00 3.01
3526 5250 7.718314 TGATGAAGATGTATTCCTGGAAATCAG 59.282 37.037 14.03 0.00 43.00 2.90
3561 5285 0.824759 GCTGGGACGGTATCTGAAGT 59.175 55.000 0.00 0.00 36.83 3.01
3562 5286 1.202428 GCTGGGACGGTATCTGAAGTC 60.202 57.143 0.00 0.00 36.83 3.01
3565 5289 1.481871 GGACGGTATCTGAAGTCCCA 58.518 55.000 11.44 0.00 45.39 4.37
3566 5290 1.409427 GGACGGTATCTGAAGTCCCAG 59.591 57.143 11.44 0.00 45.39 4.45
3567 5291 2.100989 GACGGTATCTGAAGTCCCAGT 58.899 52.381 0.00 0.00 35.71 4.00
3568 5292 2.099427 GACGGTATCTGAAGTCCCAGTC 59.901 54.545 0.00 0.00 35.71 3.51
3569 5293 2.291670 ACGGTATCTGAAGTCCCAGTCT 60.292 50.000 0.00 0.00 35.71 3.24
3570 5294 2.359531 CGGTATCTGAAGTCCCAGTCTC 59.640 54.545 0.00 0.00 35.71 3.36
3571 5295 3.366396 GGTATCTGAAGTCCCAGTCTCA 58.634 50.000 0.00 0.00 35.71 3.27
3572 5296 3.131400 GGTATCTGAAGTCCCAGTCTCAC 59.869 52.174 0.00 0.00 35.71 3.51
3573 5297 1.248486 TCTGAAGTCCCAGTCTCACG 58.752 55.000 0.00 0.00 35.71 4.35
3574 5298 1.202891 TCTGAAGTCCCAGTCTCACGA 60.203 52.381 0.00 0.00 35.71 4.35
3575 5299 1.821753 CTGAAGTCCCAGTCTCACGAT 59.178 52.381 0.00 0.00 0.00 3.73
3576 5300 1.819288 TGAAGTCCCAGTCTCACGATC 59.181 52.381 0.00 0.00 0.00 3.69
3577 5301 1.819288 GAAGTCCCAGTCTCACGATCA 59.181 52.381 0.00 0.00 0.00 2.92
3578 5302 2.151502 AGTCCCAGTCTCACGATCAT 57.848 50.000 0.00 0.00 0.00 2.45
3579 5303 1.753649 AGTCCCAGTCTCACGATCATG 59.246 52.381 0.00 0.00 0.00 3.07
3580 5304 1.478510 GTCCCAGTCTCACGATCATGT 59.521 52.381 0.00 0.00 0.00 3.21
3581 5305 1.751351 TCCCAGTCTCACGATCATGTC 59.249 52.381 0.00 0.00 0.00 3.06
3582 5306 1.478105 CCCAGTCTCACGATCATGTCA 59.522 52.381 0.00 0.00 0.00 3.58
3583 5307 2.102084 CCCAGTCTCACGATCATGTCAT 59.898 50.000 0.00 0.00 0.00 3.06
3584 5308 3.319122 CCCAGTCTCACGATCATGTCATA 59.681 47.826 0.00 0.00 0.00 2.15
3585 5309 4.202151 CCCAGTCTCACGATCATGTCATAA 60.202 45.833 0.00 0.00 0.00 1.90
3586 5310 4.981054 CCAGTCTCACGATCATGTCATAAG 59.019 45.833 0.00 0.00 0.00 1.73
3587 5311 5.451103 CCAGTCTCACGATCATGTCATAAGT 60.451 44.000 0.00 0.00 0.00 2.24
3588 5312 5.458126 CAGTCTCACGATCATGTCATAAGTG 59.542 44.000 0.00 0.00 0.00 3.16
3589 5313 5.358160 AGTCTCACGATCATGTCATAAGTGA 59.642 40.000 0.00 9.79 36.04 3.41
3607 5331 9.935682 CATAAGTGACAGAATTTTATTATGCGT 57.064 29.630 0.00 0.00 0.00 5.24
3609 5333 7.849804 AGTGACAGAATTTTATTATGCGTCT 57.150 32.000 0.00 0.00 0.00 4.18
3610 5334 7.910304 AGTGACAGAATTTTATTATGCGTCTC 58.090 34.615 0.00 0.00 0.00 3.36
3611 5335 7.766278 AGTGACAGAATTTTATTATGCGTCTCT 59.234 33.333 0.00 0.00 0.00 3.10
3612 5336 7.848051 GTGACAGAATTTTATTATGCGTCTCTG 59.152 37.037 0.00 0.00 35.12 3.35
3613 5337 6.719365 ACAGAATTTTATTATGCGTCTCTGC 58.281 36.000 0.00 0.00 32.80 4.26
3614 5338 6.540189 ACAGAATTTTATTATGCGTCTCTGCT 59.460 34.615 0.00 0.00 32.80 4.24
3615 5339 7.068341 CAGAATTTTATTATGCGTCTCTGCTC 58.932 38.462 0.00 0.00 35.36 4.26
3616 5340 5.931441 ATTTTATTATGCGTCTCTGCTCC 57.069 39.130 0.00 0.00 35.36 4.70
3617 5341 3.386768 TTATTATGCGTCTCTGCTCCC 57.613 47.619 0.00 0.00 35.36 4.30
3618 5342 1.418334 ATTATGCGTCTCTGCTCCCT 58.582 50.000 0.00 0.00 35.36 4.20
3619 5343 0.461548 TTATGCGTCTCTGCTCCCTG 59.538 55.000 0.00 0.00 35.36 4.45
3620 5344 2.021068 TATGCGTCTCTGCTCCCTGC 62.021 60.000 0.00 0.00 43.25 4.85
3621 5345 4.828925 GCGTCTCTGCTCCCTGCC 62.829 72.222 0.00 0.00 42.00 4.85
3622 5346 4.504916 CGTCTCTGCTCCCTGCCG 62.505 72.222 0.00 0.00 42.00 5.69
3623 5347 3.386237 GTCTCTGCTCCCTGCCGT 61.386 66.667 0.00 0.00 42.00 5.68
3624 5348 3.071206 TCTCTGCTCCCTGCCGTC 61.071 66.667 0.00 0.00 42.00 4.79
3625 5349 3.385384 CTCTGCTCCCTGCCGTCA 61.385 66.667 0.00 0.00 42.00 4.35
3626 5350 3.368190 CTCTGCTCCCTGCCGTCAG 62.368 68.421 0.00 0.00 42.00 3.51
3627 5351 3.699894 CTGCTCCCTGCCGTCAGT 61.700 66.667 0.00 0.00 42.00 3.41
3628 5352 3.947132 CTGCTCCCTGCCGTCAGTG 62.947 68.421 0.00 0.00 42.00 3.66
3629 5353 4.008933 GCTCCCTGCCGTCAGTGT 62.009 66.667 0.00 0.00 38.66 3.55
3630 5354 2.743718 CTCCCTGCCGTCAGTGTT 59.256 61.111 0.00 0.00 38.66 3.32
3631 5355 1.972198 CTCCCTGCCGTCAGTGTTA 59.028 57.895 0.00 0.00 38.66 2.41
3632 5356 0.320374 CTCCCTGCCGTCAGTGTTAA 59.680 55.000 0.00 0.00 38.66 2.01
3633 5357 0.320374 TCCCTGCCGTCAGTGTTAAG 59.680 55.000 0.00 0.00 38.66 1.85
3634 5358 0.320374 CCCTGCCGTCAGTGTTAAGA 59.680 55.000 0.00 0.00 38.66 2.10
3635 5359 1.673033 CCCTGCCGTCAGTGTTAAGAG 60.673 57.143 0.00 0.00 38.66 2.85
3636 5360 1.000955 CCTGCCGTCAGTGTTAAGAGT 59.999 52.381 0.00 0.00 38.66 3.24
3637 5361 2.329379 CTGCCGTCAGTGTTAAGAGTC 58.671 52.381 0.00 0.00 35.61 3.36
3638 5362 1.335597 TGCCGTCAGTGTTAAGAGTCG 60.336 52.381 0.00 0.00 0.00 4.18
3639 5363 1.337821 CCGTCAGTGTTAAGAGTCGC 58.662 55.000 0.00 0.00 0.00 5.19
3640 5364 0.975544 CGTCAGTGTTAAGAGTCGCG 59.024 55.000 0.00 0.00 0.00 5.87
3641 5365 0.708918 GTCAGTGTTAAGAGTCGCGC 59.291 55.000 0.00 0.00 0.00 6.86
3642 5366 0.596577 TCAGTGTTAAGAGTCGCGCT 59.403 50.000 5.56 0.89 0.00 5.92
3643 5367 0.710567 CAGTGTTAAGAGTCGCGCTG 59.289 55.000 5.56 0.00 33.97 5.18
3644 5368 0.314302 AGTGTTAAGAGTCGCGCTGT 59.686 50.000 5.56 0.00 0.00 4.40
3645 5369 1.538512 AGTGTTAAGAGTCGCGCTGTA 59.461 47.619 5.56 0.00 0.00 2.74
3646 5370 2.030540 AGTGTTAAGAGTCGCGCTGTAA 60.031 45.455 5.56 0.63 0.00 2.41
3647 5371 2.090195 GTGTTAAGAGTCGCGCTGTAAC 59.910 50.000 5.56 12.50 0.00 2.50
3648 5372 2.287728 TGTTAAGAGTCGCGCTGTAACA 60.288 45.455 20.13 20.13 34.50 2.41
3649 5373 2.710220 TAAGAGTCGCGCTGTAACAA 57.290 45.000 5.56 0.00 0.00 2.83
3650 5374 1.860676 AAGAGTCGCGCTGTAACAAA 58.139 45.000 5.56 0.00 0.00 2.83
3651 5375 1.419374 AGAGTCGCGCTGTAACAAAG 58.581 50.000 5.56 0.00 0.00 2.77
3652 5376 1.000607 AGAGTCGCGCTGTAACAAAGA 60.001 47.619 5.56 0.00 0.00 2.52
3653 5377 1.993370 GAGTCGCGCTGTAACAAAGAT 59.007 47.619 5.56 0.00 0.00 2.40
3654 5378 1.726791 AGTCGCGCTGTAACAAAGATG 59.273 47.619 5.56 0.00 0.00 2.90
3655 5379 0.442310 TCGCGCTGTAACAAAGATGC 59.558 50.000 5.56 0.00 0.00 3.91
3656 5380 0.165727 CGCGCTGTAACAAAGATGCA 59.834 50.000 5.56 0.00 0.00 3.96
3657 5381 1.787989 CGCGCTGTAACAAAGATGCAG 60.788 52.381 5.56 0.00 0.00 4.41
3658 5382 1.464608 GCGCTGTAACAAAGATGCAGA 59.535 47.619 0.00 0.00 0.00 4.26
3659 5383 2.475187 GCGCTGTAACAAAGATGCAGAG 60.475 50.000 0.00 0.00 0.00 3.35
3660 5384 2.094894 CGCTGTAACAAAGATGCAGAGG 59.905 50.000 0.00 0.00 0.00 3.69
3661 5385 3.338249 GCTGTAACAAAGATGCAGAGGA 58.662 45.455 0.00 0.00 0.00 3.71
3662 5386 3.753272 GCTGTAACAAAGATGCAGAGGAA 59.247 43.478 0.00 0.00 0.00 3.36
3663 5387 4.142730 GCTGTAACAAAGATGCAGAGGAAG 60.143 45.833 0.00 0.00 0.00 3.46
3664 5388 5.227569 TGTAACAAAGATGCAGAGGAAGA 57.772 39.130 0.00 0.00 0.00 2.87
3665 5389 5.240891 TGTAACAAAGATGCAGAGGAAGAG 58.759 41.667 0.00 0.00 0.00 2.85
3666 5390 3.347077 ACAAAGATGCAGAGGAAGAGG 57.653 47.619 0.00 0.00 0.00 3.69
3667 5391 2.909006 ACAAAGATGCAGAGGAAGAGGA 59.091 45.455 0.00 0.00 0.00 3.71
3668 5392 3.328931 ACAAAGATGCAGAGGAAGAGGAA 59.671 43.478 0.00 0.00 0.00 3.36
3669 5393 3.910568 AAGATGCAGAGGAAGAGGAAG 57.089 47.619 0.00 0.00 0.00 3.46
3670 5394 2.117865 AGATGCAGAGGAAGAGGAAGG 58.882 52.381 0.00 0.00 0.00 3.46
3671 5395 2.114616 GATGCAGAGGAAGAGGAAGGA 58.885 52.381 0.00 0.00 0.00 3.36
3672 5396 1.566211 TGCAGAGGAAGAGGAAGGAG 58.434 55.000 0.00 0.00 0.00 3.69
3673 5397 1.077828 TGCAGAGGAAGAGGAAGGAGA 59.922 52.381 0.00 0.00 0.00 3.71
3674 5398 2.292785 TGCAGAGGAAGAGGAAGGAGAT 60.293 50.000 0.00 0.00 0.00 2.75
3675 5399 2.102925 GCAGAGGAAGAGGAAGGAGATG 59.897 54.545 0.00 0.00 0.00 2.90
3676 5400 3.373830 CAGAGGAAGAGGAAGGAGATGT 58.626 50.000 0.00 0.00 0.00 3.06
3677 5401 3.132646 CAGAGGAAGAGGAAGGAGATGTG 59.867 52.174 0.00 0.00 0.00 3.21
3678 5402 3.012274 AGAGGAAGAGGAAGGAGATGTGA 59.988 47.826 0.00 0.00 0.00 3.58
3679 5403 3.373830 AGGAAGAGGAAGGAGATGTGAG 58.626 50.000 0.00 0.00 0.00 3.51
3680 5404 2.433970 GGAAGAGGAAGGAGATGTGAGG 59.566 54.545 0.00 0.00 0.00 3.86
3681 5405 3.370104 GAAGAGGAAGGAGATGTGAGGA 58.630 50.000 0.00 0.00 0.00 3.71
3682 5406 3.030873 AGAGGAAGGAGATGTGAGGAG 57.969 52.381 0.00 0.00 0.00 3.69
3683 5407 2.314549 AGAGGAAGGAGATGTGAGGAGT 59.685 50.000 0.00 0.00 0.00 3.85
3684 5408 3.103742 GAGGAAGGAGATGTGAGGAGTT 58.896 50.000 0.00 0.00 0.00 3.01
3685 5409 2.836981 AGGAAGGAGATGTGAGGAGTTG 59.163 50.000 0.00 0.00 0.00 3.16
3686 5410 2.834549 GGAAGGAGATGTGAGGAGTTGA 59.165 50.000 0.00 0.00 0.00 3.18
3687 5411 3.118811 GGAAGGAGATGTGAGGAGTTGAG 60.119 52.174 0.00 0.00 0.00 3.02
3688 5412 3.464720 AGGAGATGTGAGGAGTTGAGA 57.535 47.619 0.00 0.00 0.00 3.27
3689 5413 3.364549 AGGAGATGTGAGGAGTTGAGAG 58.635 50.000 0.00 0.00 0.00 3.20
3690 5414 3.011144 AGGAGATGTGAGGAGTTGAGAGA 59.989 47.826 0.00 0.00 0.00 3.10
3691 5415 3.766591 GGAGATGTGAGGAGTTGAGAGAA 59.233 47.826 0.00 0.00 0.00 2.87
3692 5416 4.142182 GGAGATGTGAGGAGTTGAGAGAAG 60.142 50.000 0.00 0.00 0.00 2.85
3693 5417 3.195396 AGATGTGAGGAGTTGAGAGAAGC 59.805 47.826 0.00 0.00 0.00 3.86
3694 5418 2.319844 TGTGAGGAGTTGAGAGAAGCA 58.680 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.531287 GTCTAACCAGAACCAAGAAACATGT 59.469 40.000 0.00 0.00 30.85 3.21
4 5 5.530915 TGTCTAACCAGAACCAAGAAACATG 59.469 40.000 0.00 0.00 30.85 3.21
202 665 9.213799 GCGGAAATTTTAGAGATTCAGATAGAT 57.786 33.333 0.00 0.00 0.00 1.98
218 681 5.047188 CACCAAAGTACTTGCGGAAATTTT 58.953 37.500 24.33 4.75 33.27 1.82
253 716 5.017294 AGCTAGACTGCTTCCTGTAATTC 57.983 43.478 0.00 0.00 40.93 2.17
273 736 2.687935 AGTGCTAGAGCTTGACTAGAGC 59.312 50.000 11.19 0.00 42.66 4.09
274 737 4.035558 CAGAGTGCTAGAGCTTGACTAGAG 59.964 50.000 11.19 0.00 42.66 2.43
278 741 1.824230 CCAGAGTGCTAGAGCTTGACT 59.176 52.381 2.72 0.00 42.66 3.41
279 742 1.548269 ACCAGAGTGCTAGAGCTTGAC 59.452 52.381 2.72 0.00 42.66 3.18
281 744 1.547820 TCACCAGAGTGCTAGAGCTTG 59.452 52.381 2.72 0.00 44.16 4.01
282 745 1.930251 TCACCAGAGTGCTAGAGCTT 58.070 50.000 2.72 0.00 44.16 3.74
284 747 2.751166 TTTCACCAGAGTGCTAGAGC 57.249 50.000 0.00 0.00 44.16 4.09
285 748 3.931468 CACATTTCACCAGAGTGCTAGAG 59.069 47.826 0.00 0.00 44.16 2.43
286 749 3.324846 ACACATTTCACCAGAGTGCTAGA 59.675 43.478 0.00 0.00 44.16 2.43
287 750 3.434641 CACACATTTCACCAGAGTGCTAG 59.565 47.826 0.00 0.00 44.16 3.42
288 751 3.402110 CACACATTTCACCAGAGTGCTA 58.598 45.455 0.00 0.00 44.16 3.49
289 752 2.224606 CACACATTTCACCAGAGTGCT 58.775 47.619 0.00 0.00 44.16 4.40
290 753 1.335324 GCACACATTTCACCAGAGTGC 60.335 52.381 0.00 0.00 44.16 4.40
291 754 1.948834 TGCACACATTTCACCAGAGTG 59.051 47.619 0.00 0.00 46.00 3.51
304 767 2.615240 CCCATTGTAGCTACTGCACACA 60.615 50.000 23.84 2.02 42.74 3.72
316 779 1.094785 CTTTGTCCCGCCCATTGTAG 58.905 55.000 0.00 0.00 0.00 2.74
319 782 2.350458 CCCTTTGTCCCGCCCATTG 61.350 63.158 0.00 0.00 0.00 2.82
321 784 3.264845 ACCCTTTGTCCCGCCCAT 61.265 61.111 0.00 0.00 0.00 4.00
322 785 3.961414 GACCCTTTGTCCCGCCCA 61.961 66.667 0.00 0.00 38.09 5.36
326 789 3.659089 ATCGCGACCCTTTGTCCCG 62.659 63.158 12.93 0.00 44.65 5.14
328 791 0.806492 GAGATCGCGACCCTTTGTCC 60.806 60.000 12.93 0.00 41.18 4.02
329 792 1.140407 CGAGATCGCGACCCTTTGTC 61.140 60.000 12.93 2.57 40.81 3.18
330 793 1.153823 CGAGATCGCGACCCTTTGT 60.154 57.895 12.93 0.00 0.00 2.83
331 794 3.693245 CGAGATCGCGACCCTTTG 58.307 61.111 12.93 5.12 0.00 2.77
342 805 1.167155 TAGCTCACCCTCGCGAGATC 61.167 60.000 36.59 17.19 40.84 2.75
344 807 1.378119 TTAGCTCACCCTCGCGAGA 60.378 57.895 36.59 16.50 39.12 4.04
345 808 1.226717 GTTAGCTCACCCTCGCGAG 60.227 63.158 29.06 29.06 0.00 5.03
346 809 1.654954 GAGTTAGCTCACCCTCGCGA 61.655 60.000 9.26 9.26 41.29 5.87
347 810 1.226717 GAGTTAGCTCACCCTCGCG 60.227 63.158 0.00 0.00 41.29 5.87
348 811 1.142097 GGAGTTAGCTCACCCTCGC 59.858 63.158 8.96 0.00 43.37 5.03
349 812 0.895530 TTGGAGTTAGCTCACCCTCG 59.104 55.000 8.96 0.00 43.37 4.63
353 816 2.557056 GGGTTTTTGGAGTTAGCTCACC 59.443 50.000 8.96 6.70 43.37 4.02
354 817 3.487372 AGGGTTTTTGGAGTTAGCTCAC 58.513 45.455 8.96 0.00 43.37 3.51
355 818 3.876309 AGGGTTTTTGGAGTTAGCTCA 57.124 42.857 8.96 0.00 43.37 4.26
356 819 4.640647 CCATAGGGTTTTTGGAGTTAGCTC 59.359 45.833 0.00 0.00 40.93 4.09
357 820 4.600062 CCATAGGGTTTTTGGAGTTAGCT 58.400 43.478 0.00 0.00 31.94 3.32
358 821 3.130516 GCCATAGGGTTTTTGGAGTTAGC 59.869 47.826 0.00 0.00 36.17 3.09
359 822 4.340617 TGCCATAGGGTTTTTGGAGTTAG 58.659 43.478 0.00 0.00 36.17 2.34
360 823 4.390129 TGCCATAGGGTTTTTGGAGTTA 57.610 40.909 0.00 0.00 36.17 2.24
361 824 3.252554 TGCCATAGGGTTTTTGGAGTT 57.747 42.857 0.00 0.00 36.17 3.01
362 825 2.990740 TGCCATAGGGTTTTTGGAGT 57.009 45.000 0.00 0.00 36.17 3.85
363 826 5.930837 TTAATGCCATAGGGTTTTTGGAG 57.069 39.130 0.00 0.00 36.17 3.86
364 827 6.688073 TTTTAATGCCATAGGGTTTTTGGA 57.312 33.333 0.00 0.00 36.17 3.53
365 828 8.043710 TGTATTTTAATGCCATAGGGTTTTTGG 58.956 33.333 0.00 0.00 36.17 3.28
366 829 9.612066 ATGTATTTTAATGCCATAGGGTTTTTG 57.388 29.630 0.00 0.00 36.17 2.44
369 832 7.566879 TCCATGTATTTTAATGCCATAGGGTTT 59.433 33.333 0.00 0.00 36.17 3.27
370 833 7.072562 TCCATGTATTTTAATGCCATAGGGTT 58.927 34.615 0.00 0.00 36.17 4.11
372 835 6.153340 CCTCCATGTATTTTAATGCCATAGGG 59.847 42.308 0.00 0.00 37.18 3.53
375 838 7.293828 TGACCTCCATGTATTTTAATGCCATA 58.706 34.615 0.00 0.00 0.00 2.74
377 840 5.514169 TGACCTCCATGTATTTTAATGCCA 58.486 37.500 0.00 0.00 0.00 4.92
378 841 6.449698 CATGACCTCCATGTATTTTAATGCC 58.550 40.000 0.00 0.00 45.83 4.40
392 855 1.002069 AAGATTGGGCATGACCTCCA 58.998 50.000 21.02 2.72 39.10 3.86
393 856 2.149973 AAAGATTGGGCATGACCTCC 57.850 50.000 21.02 7.76 39.10 4.30
414 877 9.234827 ACTTCATCACATCATCAGATTTGTTAA 57.765 29.630 0.00 0.00 34.35 2.01
417 880 7.698506 AACTTCATCACATCATCAGATTTGT 57.301 32.000 0.00 0.00 34.35 2.83
418 881 8.027189 ACAAACTTCATCACATCATCAGATTTG 58.973 33.333 0.00 0.00 34.07 2.32
419 882 8.027189 CACAAACTTCATCACATCATCAGATTT 58.973 33.333 0.00 0.00 30.20 2.17
420 883 7.176165 ACACAAACTTCATCACATCATCAGATT 59.824 33.333 0.00 0.00 30.20 2.40
422 885 5.999600 ACACAAACTTCATCACATCATCAGA 59.000 36.000 0.00 0.00 0.00 3.27
423 886 6.148976 AGACACAAACTTCATCACATCATCAG 59.851 38.462 0.00 0.00 0.00 2.90
424 887 5.999600 AGACACAAACTTCATCACATCATCA 59.000 36.000 0.00 0.00 0.00 3.07
425 888 6.072838 ACAGACACAAACTTCATCACATCATC 60.073 38.462 0.00 0.00 0.00 2.92
426 889 5.766670 ACAGACACAAACTTCATCACATCAT 59.233 36.000 0.00 0.00 0.00 2.45
427 890 5.125356 ACAGACACAAACTTCATCACATCA 58.875 37.500 0.00 0.00 0.00 3.07
428 891 5.679734 ACAGACACAAACTTCATCACATC 57.320 39.130 0.00 0.00 0.00 3.06
429 892 6.455360 AAACAGACACAAACTTCATCACAT 57.545 33.333 0.00 0.00 0.00 3.21
430 893 5.895636 AAACAGACACAAACTTCATCACA 57.104 34.783 0.00 0.00 0.00 3.58
454 917 9.829507 ACATCCACAGAACAAATTTTAATTCAA 57.170 25.926 8.54 0.00 0.00 2.69
455 918 9.258826 CACATCCACAGAACAAATTTTAATTCA 57.741 29.630 8.54 0.00 0.00 2.57
456 919 9.474920 TCACATCCACAGAACAAATTTTAATTC 57.525 29.630 0.00 0.00 0.00 2.17
459 922 9.906660 GTATCACATCCACAGAACAAATTTTAA 57.093 29.630 0.00 0.00 0.00 1.52
461 924 7.015098 TGGTATCACATCCACAGAACAAATTTT 59.985 33.333 0.00 0.00 0.00 1.82
462 925 6.493115 TGGTATCACATCCACAGAACAAATTT 59.507 34.615 0.00 0.00 0.00 1.82
464 927 5.569355 TGGTATCACATCCACAGAACAAAT 58.431 37.500 0.00 0.00 0.00 2.32
466 929 4.632327 TGGTATCACATCCACAGAACAA 57.368 40.909 0.00 0.00 0.00 2.83
479 942 2.884639 AGCAAACCTGTTGTGGTATCAC 59.115 45.455 0.00 0.00 39.83 3.06
480 943 3.222173 AGCAAACCTGTTGTGGTATCA 57.778 42.857 0.00 0.00 39.83 2.15
481 944 3.821033 AGAAGCAAACCTGTTGTGGTATC 59.179 43.478 0.00 0.00 39.83 2.24
483 946 3.211045 GAGAAGCAAACCTGTTGTGGTA 58.789 45.455 0.00 0.00 39.83 3.25
484 947 2.024414 GAGAAGCAAACCTGTTGTGGT 58.976 47.619 0.00 0.00 43.11 4.16
485 948 2.023673 TGAGAAGCAAACCTGTTGTGG 58.976 47.619 0.00 0.00 0.00 4.17
486 949 3.567164 AGATGAGAAGCAAACCTGTTGTG 59.433 43.478 0.00 0.00 0.00 3.33
487 950 3.567164 CAGATGAGAAGCAAACCTGTTGT 59.433 43.478 0.00 0.00 0.00 3.32
488 951 3.057736 CCAGATGAGAAGCAAACCTGTTG 60.058 47.826 0.00 0.00 0.00 3.33
489 952 3.152341 CCAGATGAGAAGCAAACCTGTT 58.848 45.455 0.00 0.00 0.00 3.16
490 953 2.107204 ACCAGATGAGAAGCAAACCTGT 59.893 45.455 0.00 0.00 0.00 4.00
491 954 2.746362 GACCAGATGAGAAGCAAACCTG 59.254 50.000 0.00 0.00 0.00 4.00
492 955 2.373169 TGACCAGATGAGAAGCAAACCT 59.627 45.455 0.00 0.00 0.00 3.50
493 956 2.783135 TGACCAGATGAGAAGCAAACC 58.217 47.619 0.00 0.00 0.00 3.27
494 957 3.755378 ACATGACCAGATGAGAAGCAAAC 59.245 43.478 0.00 0.00 0.00 2.93
495 958 4.025040 ACATGACCAGATGAGAAGCAAA 57.975 40.909 0.00 0.00 0.00 3.68
496 959 3.708403 ACATGACCAGATGAGAAGCAA 57.292 42.857 0.00 0.00 0.00 3.91
497 960 4.507710 GTTACATGACCAGATGAGAAGCA 58.492 43.478 0.00 0.00 0.00 3.91
580 1043 2.435120 GATGGTTTTCCCCGGGGTGT 62.435 60.000 38.73 17.32 39.73 4.16
637 1100 2.421424 GTCTTCATTGACACTGCCATCC 59.579 50.000 0.00 0.00 36.97 3.51
689 1152 5.280419 CCCTATTTGCCCCTGAAAAATTTCA 60.280 40.000 8.21 8.21 44.31 2.69
693 1156 4.073425 TCCCTATTTGCCCCTGAAAAAT 57.927 40.909 0.00 0.00 0.00 1.82
749 1212 3.197766 TCACCTGAGAGAGAGAGAGAGAC 59.802 52.174 0.00 0.00 0.00 3.36
766 1229 6.209026 AGGGAGAGAGATCTTTATTTCACCT 58.791 40.000 0.00 0.00 0.00 4.00
802 1285 3.039526 AGAGGGGAGGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
806 1289 0.998945 AGAGAGAGAGGGGAGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
807 1290 0.996762 GAGAGAGAGAGGGGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
812 1306 4.044065 GGAATATGAGAGAGAGAGAGGGGA 59.956 50.000 0.00 0.00 0.00 4.81
836 1330 1.985473 TCTGGCTTGCTTCACACAAT 58.015 45.000 0.00 0.00 0.00 2.71
843 1337 3.556843 GGGATCTAGATCTGGCTTGCTTC 60.557 52.174 27.65 10.34 37.92 3.86
863 1357 1.136828 TATGAGATTGGGGAACGGGG 58.863 55.000 0.00 0.00 0.00 5.73
883 1377 6.624352 AAGGAATATGAACGAATGATGTGG 57.376 37.500 0.00 0.00 0.00 4.17
894 1388 6.913170 TGCTTTCACAGAAAGGAATATGAAC 58.087 36.000 18.08 2.60 0.00 3.18
908 1402 8.772705 GGATCTAGATCTATTTTGCTTTCACAG 58.227 37.037 27.65 0.00 37.92 3.66
928 1422 4.225492 ACGAGATCGAGGAATAGGGATCTA 59.775 45.833 9.58 0.00 44.08 1.98
930 1424 3.349022 ACGAGATCGAGGAATAGGGATC 58.651 50.000 9.58 0.00 43.02 3.36
931 1425 3.443145 ACGAGATCGAGGAATAGGGAT 57.557 47.619 9.58 0.00 43.02 3.85
932 1426 2.953284 ACGAGATCGAGGAATAGGGA 57.047 50.000 9.58 0.00 43.02 4.20
933 1427 2.748532 GGTACGAGATCGAGGAATAGGG 59.251 54.545 9.58 0.00 43.02 3.53
935 1429 3.813724 TGTGGTACGAGATCGAGGAATAG 59.186 47.826 9.58 0.00 43.02 1.73
936 1430 3.812262 TGTGGTACGAGATCGAGGAATA 58.188 45.455 9.58 0.00 43.02 1.75
937 1431 2.651455 TGTGGTACGAGATCGAGGAAT 58.349 47.619 9.58 0.00 43.02 3.01
939 1433 2.219458 GATGTGGTACGAGATCGAGGA 58.781 52.381 9.58 0.00 43.02 3.71
940 1434 1.947456 TGATGTGGTACGAGATCGAGG 59.053 52.381 9.58 0.00 43.02 4.63
941 1435 2.614520 AGTGATGTGGTACGAGATCGAG 59.385 50.000 9.58 0.00 43.02 4.04
942 1436 2.354821 CAGTGATGTGGTACGAGATCGA 59.645 50.000 9.58 0.00 43.02 3.59
943 1437 2.720933 CAGTGATGTGGTACGAGATCG 58.279 52.381 9.86 0.00 46.33 3.69
944 1438 2.464865 GCAGTGATGTGGTACGAGATC 58.535 52.381 7.91 7.91 0.00 2.75
945 1439 1.137086 GGCAGTGATGTGGTACGAGAT 59.863 52.381 0.00 0.00 0.00 2.75
946 1440 0.530744 GGCAGTGATGTGGTACGAGA 59.469 55.000 0.00 0.00 0.00 4.04
947 1441 0.246360 TGGCAGTGATGTGGTACGAG 59.754 55.000 0.00 0.00 0.00 4.18
948 1442 0.682292 TTGGCAGTGATGTGGTACGA 59.318 50.000 0.00 0.00 0.00 3.43
949 1443 0.796312 GTTGGCAGTGATGTGGTACG 59.204 55.000 0.00 0.00 0.00 3.67
952 1446 1.064003 TAGGTTGGCAGTGATGTGGT 58.936 50.000 0.00 0.00 0.00 4.16
953 1447 2.198827 TTAGGTTGGCAGTGATGTGG 57.801 50.000 0.00 0.00 0.00 4.17
954 1448 4.460382 AGATTTTAGGTTGGCAGTGATGTG 59.540 41.667 0.00 0.00 0.00 3.21
955 1449 4.666512 AGATTTTAGGTTGGCAGTGATGT 58.333 39.130 0.00 0.00 0.00 3.06
956 1450 5.393461 GGAAGATTTTAGGTTGGCAGTGATG 60.393 44.000 0.00 0.00 0.00 3.07
958 1452 4.079253 GGAAGATTTTAGGTTGGCAGTGA 58.921 43.478 0.00 0.00 0.00 3.41
959 1453 4.082125 AGGAAGATTTTAGGTTGGCAGTG 58.918 43.478 0.00 0.00 0.00 3.66
960 1454 4.388577 AGGAAGATTTTAGGTTGGCAGT 57.611 40.909 0.00 0.00 0.00 4.40
961 1455 5.012893 AGAAGGAAGATTTTAGGTTGGCAG 58.987 41.667 0.00 0.00 0.00 4.85
963 1457 5.714047 CAAGAAGGAAGATTTTAGGTTGGC 58.286 41.667 0.00 0.00 0.00 4.52
964 1458 5.243730 TGCAAGAAGGAAGATTTTAGGTTGG 59.756 40.000 0.00 0.00 0.00 3.77
965 1459 6.331369 TGCAAGAAGGAAGATTTTAGGTTG 57.669 37.500 0.00 0.00 0.00 3.77
977 1471 2.612212 GTCGAACACTTGCAAGAAGGAA 59.388 45.455 32.50 10.33 0.00 3.36
978 1472 2.210116 GTCGAACACTTGCAAGAAGGA 58.790 47.619 32.50 17.44 0.00 3.36
979 1473 1.264288 GGTCGAACACTTGCAAGAAGG 59.736 52.381 32.50 21.50 0.00 3.46
981 1475 2.031258 TGGTCGAACACTTGCAAGAA 57.969 45.000 32.50 7.74 0.00 2.52
983 1477 1.069022 CCATGGTCGAACACTTGCAAG 60.069 52.381 24.84 24.84 0.00 4.01
984 1478 0.950836 CCATGGTCGAACACTTGCAA 59.049 50.000 4.62 0.00 0.00 4.08
985 1479 0.107643 TCCATGGTCGAACACTTGCA 59.892 50.000 4.62 0.00 0.00 4.08
986 1480 0.798776 CTCCATGGTCGAACACTTGC 59.201 55.000 4.62 0.00 0.00 4.01
987 1481 1.001974 TCCTCCATGGTCGAACACTTG 59.998 52.381 4.62 0.00 37.07 3.16
988 1482 1.276421 CTCCTCCATGGTCGAACACTT 59.724 52.381 4.62 0.00 37.07 3.16
989 1483 0.898320 CTCCTCCATGGTCGAACACT 59.102 55.000 4.62 0.00 37.07 3.55
990 1484 0.108138 CCTCCTCCATGGTCGAACAC 60.108 60.000 4.62 0.00 37.07 3.32
991 1485 0.252057 TCCTCCTCCATGGTCGAACA 60.252 55.000 5.17 5.17 37.07 3.18
992 1486 0.461961 CTCCTCCTCCATGGTCGAAC 59.538 60.000 12.58 0.00 37.07 3.95
993 1487 0.687757 CCTCCTCCTCCATGGTCGAA 60.688 60.000 12.58 0.00 37.07 3.71
994 1488 1.075970 CCTCCTCCTCCATGGTCGA 60.076 63.158 12.58 7.47 37.07 4.20
995 1489 2.801631 GCCTCCTCCTCCATGGTCG 61.802 68.421 12.58 4.18 37.07 4.79
996 1490 2.447714 GGCCTCCTCCTCCATGGTC 61.448 68.421 12.58 0.00 37.07 4.02
998 1492 3.554342 CGGCCTCCTCCTCCATGG 61.554 72.222 4.97 4.97 37.10 3.66
999 1493 4.247380 GCGGCCTCCTCCTCCATG 62.247 72.222 0.00 0.00 0.00 3.66
1018 1852 1.207329 AGCACGAATTACCTCCACCTC 59.793 52.381 0.00 0.00 0.00 3.85
1050 1884 2.362397 GTCAGCGATTCCCACAGATCTA 59.638 50.000 0.00 0.00 0.00 1.98
1351 2188 0.108424 AAGATGAGGTGCAGCGAGAC 60.108 55.000 10.78 4.31 38.13 3.36
1517 2360 1.971167 CCGCCAAGCCTAAGCACAA 60.971 57.895 0.00 0.00 43.56 3.33
1555 2404 0.030638 GAAAAACTTGGCAGCGCAGA 59.969 50.000 11.47 0.00 0.00 4.26
1907 2765 2.230660 GAAAGACTGTGGTTCCAAGGG 58.769 52.381 0.00 0.00 0.00 3.95
2007 2886 8.677300 GGTGACAGCAATCATTTTCTATAGAAA 58.323 33.333 21.46 21.46 41.77 2.52
2008 2887 7.828717 TGGTGACAGCAATCATTTTCTATAGAA 59.171 33.333 11.24 11.24 35.01 2.10
2009 2888 7.337938 TGGTGACAGCAATCATTTTCTATAGA 58.662 34.615 4.51 0.00 35.01 1.98
2198 3083 7.147707 ACCTAAAACAGAGGGAGTACATCATAC 60.148 40.741 0.00 0.00 38.52 2.39
2208 3093 4.553330 TTAGCACCTAAAACAGAGGGAG 57.447 45.455 0.00 0.00 38.52 4.30
2211 3096 6.575162 ACAAATTAGCACCTAAAACAGAGG 57.425 37.500 0.00 0.00 40.22 3.69
2320 3218 7.669427 AGTTCAAGGCATTCAATTGTATCAAA 58.331 30.769 5.13 0.00 0.00 2.69
2695 3643 3.514309 AGCGTTATAAGGGAGTGACAACT 59.486 43.478 7.25 0.00 40.21 3.16
2704 3652 3.620427 TTTGCAGAGCGTTATAAGGGA 57.380 42.857 7.25 0.00 0.00 4.20
2763 3711 6.463614 CCTCAATCCTGGTTTCCTCTATAGTG 60.464 46.154 0.00 0.00 0.00 2.74
2765 3713 5.012561 CCCTCAATCCTGGTTTCCTCTATAG 59.987 48.000 0.00 0.00 0.00 1.31
2769 3717 1.918957 CCCTCAATCCTGGTTTCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
2772 3720 0.033109 CCCCCTCAATCCTGGTTTCC 60.033 60.000 0.00 0.00 0.00 3.13
2773 3721 0.704664 ACCCCCTCAATCCTGGTTTC 59.295 55.000 0.00 0.00 0.00 2.78
2774 3722 1.639108 GTACCCCCTCAATCCTGGTTT 59.361 52.381 0.00 0.00 0.00 3.27
2775 3723 1.296002 GTACCCCCTCAATCCTGGTT 58.704 55.000 0.00 0.00 0.00 3.67
2777 3725 1.696097 CCGTACCCCCTCAATCCTGG 61.696 65.000 0.00 0.00 0.00 4.45
2778 3726 0.981277 ACCGTACCCCCTCAATCCTG 60.981 60.000 0.00 0.00 0.00 3.86
2779 3727 0.981277 CACCGTACCCCCTCAATCCT 60.981 60.000 0.00 0.00 0.00 3.24
2780 3728 1.525442 CACCGTACCCCCTCAATCC 59.475 63.158 0.00 0.00 0.00 3.01
2781 3729 1.269703 ACCACCGTACCCCCTCAATC 61.270 60.000 0.00 0.00 0.00 2.67
2783 3731 2.204889 ACCACCGTACCCCCTCAA 59.795 61.111 0.00 0.00 0.00 3.02
2784 3732 2.605295 CACCACCGTACCCCCTCA 60.605 66.667 0.00 0.00 0.00 3.86
2823 3771 4.209080 GCACCTTGTACATTTGCAAGTTTC 59.791 41.667 15.41 0.00 42.31 2.78
3007 4280 8.947055 ATCAATTACATGCAAGGAAATAAACC 57.053 30.769 0.00 0.00 0.00 3.27
3025 4298 7.168219 ACCTGCTGAGAAGTTGTAATCAATTA 58.832 34.615 0.00 0.00 35.92 1.40
3069 4342 2.788407 GCTAGTACGCTTGTCTGTCTCG 60.788 54.545 0.00 0.00 0.00 4.04
3095 4368 5.305585 TGACTAAACTAGCAGAAACTTGGG 58.694 41.667 0.00 0.00 0.00 4.12
3099 4380 7.934120 ACATTCTTGACTAAACTAGCAGAAACT 59.066 33.333 0.00 0.00 0.00 2.66
3141 4422 6.547141 AGAAATCAACACAAAGGAATCAGACA 59.453 34.615 0.00 0.00 0.00 3.41
3144 4425 6.742109 ACAGAAATCAACACAAAGGAATCAG 58.258 36.000 0.00 0.00 0.00 2.90
3146 4427 8.352942 ACTTACAGAAATCAACACAAAGGAATC 58.647 33.333 0.00 0.00 0.00 2.52
3156 4437 8.154203 TGATAGACCAACTTACAGAAATCAACA 58.846 33.333 0.00 0.00 0.00 3.33
3192 4473 6.790285 TCACCAAAGTACTTACGGAAATTC 57.210 37.500 24.03 0.00 0.00 2.17
3224 4505 8.482128 AGAGCTATACTGCTTCATATAAATCCC 58.518 37.037 0.00 0.00 44.17 3.85
3230 4511 9.913310 AGTGATAGAGCTATACTGCTTCATATA 57.087 33.333 0.00 0.00 44.17 0.86
3232 4513 8.642935 AAGTGATAGAGCTATACTGCTTCATA 57.357 34.615 0.00 0.00 44.17 2.15
3233 4514 7.537596 AAGTGATAGAGCTATACTGCTTCAT 57.462 36.000 0.00 0.00 44.17 2.57
3234 4515 6.968263 AAGTGATAGAGCTATACTGCTTCA 57.032 37.500 0.00 0.00 44.17 3.02
3235 4516 8.573035 ACTAAAGTGATAGAGCTATACTGCTTC 58.427 37.037 0.00 0.00 44.17 3.86
3236 4517 8.472007 ACTAAAGTGATAGAGCTATACTGCTT 57.528 34.615 0.00 0.00 44.17 3.91
3277 4558 9.807649 GAATCATGCAAACAAACCTAGAAATAT 57.192 29.630 0.00 0.00 0.00 1.28
3278 4559 9.023962 AGAATCATGCAAACAAACCTAGAAATA 57.976 29.630 0.00 0.00 0.00 1.40
3279 4560 7.899973 AGAATCATGCAAACAAACCTAGAAAT 58.100 30.769 0.00 0.00 0.00 2.17
3302 4990 3.517100 AGAGCTAGGCAGTGAATGAAAGA 59.483 43.478 0.00 0.00 0.00 2.52
3304 4992 3.988976 AGAGCTAGGCAGTGAATGAAA 57.011 42.857 0.00 0.00 0.00 2.69
3316 5004 9.563748 AGTGTTAGTTAATAGACTAGAGCTAGG 57.436 37.037 9.18 0.00 37.49 3.02
3331 5019 4.638304 GCTGACCCTCAAGTGTTAGTTAA 58.362 43.478 0.00 0.00 0.00 2.01
3336 5024 0.320421 GCGCTGACCCTCAAGTGTTA 60.320 55.000 0.00 0.00 0.00 2.41
3338 5026 2.031163 GCGCTGACCCTCAAGTGT 59.969 61.111 0.00 0.00 0.00 3.55
3362 5050 1.254570 GCTTTCGTGGCGACTAATACG 59.745 52.381 0.00 0.00 34.89 3.06
3363 5051 2.281762 CAGCTTTCGTGGCGACTAATAC 59.718 50.000 0.00 0.00 34.89 1.89
3374 5062 1.089112 TGCCATGATCAGCTTTCGTG 58.911 50.000 0.09 8.18 0.00 4.35
3394 5082 5.497474 AGAAACTACATATCGCCAACCTTT 58.503 37.500 0.00 0.00 0.00 3.11
3396 5084 4.755266 AGAAACTACATATCGCCAACCT 57.245 40.909 0.00 0.00 0.00 3.50
3398 5086 6.417191 TTCAAGAAACTACATATCGCCAAC 57.583 37.500 0.00 0.00 0.00 3.77
3404 5092 7.039882 TCGTCCCTTTCAAGAAACTACATATC 58.960 38.462 0.00 0.00 0.00 1.63
3409 5097 5.055144 AGTTCGTCCCTTTCAAGAAACTAC 58.945 41.667 0.00 0.00 0.00 2.73
3423 5111 3.053831 TCAGGAAATTGAGTTCGTCCC 57.946 47.619 0.00 0.00 0.00 4.46
3432 5120 5.534654 CCCTTTACACTGTTCAGGAAATTGA 59.465 40.000 7.61 0.00 0.00 2.57
3441 5129 2.303175 GCAACCCCTTTACACTGTTCA 58.697 47.619 0.00 0.00 0.00 3.18
3449 5137 1.886542 CTCCAGTTGCAACCCCTTTAC 59.113 52.381 25.62 0.00 0.00 2.01
3482 5206 4.154347 CCGTCCTCTGCCTGGAGC 62.154 72.222 0.00 0.00 44.14 4.70
3485 5209 2.362369 ATCACCGTCCTCTGCCTGG 61.362 63.158 0.00 0.00 0.00 4.45
3486 5210 1.153489 CATCACCGTCCTCTGCCTG 60.153 63.158 0.00 0.00 0.00 4.85
3491 5215 2.461695 ACATCTTCATCACCGTCCTCT 58.538 47.619 0.00 0.00 0.00 3.69
3509 5233 9.396022 GAGATTTTACTGATTTCCAGGAATACA 57.604 33.333 1.58 5.75 44.77 2.29
3510 5234 9.396022 TGAGATTTTACTGATTTCCAGGAATAC 57.604 33.333 1.58 1.00 44.77 1.89
3512 5236 9.129532 GATGAGATTTTACTGATTTCCAGGAAT 57.870 33.333 1.58 0.00 44.77 3.01
3526 5250 4.336713 GTCCCAGCCAAGATGAGATTTTAC 59.663 45.833 0.00 0.00 0.00 2.01
3561 5285 1.751351 GACATGATCGTGAGACTGGGA 59.249 52.381 21.75 0.00 46.97 4.37
3562 5286 1.478105 TGACATGATCGTGAGACTGGG 59.522 52.381 21.75 0.00 46.97 4.45
3563 5287 2.947448 TGACATGATCGTGAGACTGG 57.053 50.000 21.75 0.00 46.97 4.00
3564 5288 5.458126 CACTTATGACATGATCGTGAGACTG 59.542 44.000 21.75 8.93 46.97 3.51
3565 5289 5.358160 TCACTTATGACATGATCGTGAGACT 59.642 40.000 21.75 0.00 46.97 3.24
3566 5290 5.582550 TCACTTATGACATGATCGTGAGAC 58.417 41.667 21.75 12.00 46.97 3.36
3581 5305 9.935682 ACGCATAATAAAATTCTGTCACTTATG 57.064 29.630 0.00 0.00 0.00 1.90
3583 5307 9.378551 AGACGCATAATAAAATTCTGTCACTTA 57.621 29.630 0.00 0.00 0.00 2.24
3584 5308 8.268850 AGACGCATAATAAAATTCTGTCACTT 57.731 30.769 0.00 0.00 0.00 3.16
3585 5309 7.766278 AGAGACGCATAATAAAATTCTGTCACT 59.234 33.333 0.00 0.00 0.00 3.41
3586 5310 7.848051 CAGAGACGCATAATAAAATTCTGTCAC 59.152 37.037 0.00 0.00 0.00 3.67
3587 5311 7.465916 GCAGAGACGCATAATAAAATTCTGTCA 60.466 37.037 0.00 0.00 33.79 3.58
3588 5312 6.848296 GCAGAGACGCATAATAAAATTCTGTC 59.152 38.462 0.00 0.00 33.79 3.51
3589 5313 6.540189 AGCAGAGACGCATAATAAAATTCTGT 59.460 34.615 0.00 0.00 33.79 3.41
3590 5314 6.952743 AGCAGAGACGCATAATAAAATTCTG 58.047 36.000 0.00 0.00 34.25 3.02
3591 5315 6.203723 GGAGCAGAGACGCATAATAAAATTCT 59.796 38.462 0.00 0.00 0.00 2.40
3592 5316 6.366630 GGAGCAGAGACGCATAATAAAATTC 58.633 40.000 0.00 0.00 0.00 2.17
3593 5317 5.239525 GGGAGCAGAGACGCATAATAAAATT 59.760 40.000 0.00 0.00 0.00 1.82
3594 5318 4.757149 GGGAGCAGAGACGCATAATAAAAT 59.243 41.667 0.00 0.00 0.00 1.82
3595 5319 4.127171 GGGAGCAGAGACGCATAATAAAA 58.873 43.478 0.00 0.00 0.00 1.52
3596 5320 3.388024 AGGGAGCAGAGACGCATAATAAA 59.612 43.478 0.00 0.00 0.00 1.40
3597 5321 2.965831 AGGGAGCAGAGACGCATAATAA 59.034 45.455 0.00 0.00 0.00 1.40
3598 5322 2.297315 CAGGGAGCAGAGACGCATAATA 59.703 50.000 0.00 0.00 0.00 0.98
3599 5323 1.069823 CAGGGAGCAGAGACGCATAAT 59.930 52.381 0.00 0.00 0.00 1.28
3600 5324 0.461548 CAGGGAGCAGAGACGCATAA 59.538 55.000 0.00 0.00 0.00 1.90
3601 5325 2.021068 GCAGGGAGCAGAGACGCATA 62.021 60.000 0.00 0.00 44.79 3.14
3602 5326 2.898738 CAGGGAGCAGAGACGCAT 59.101 61.111 0.00 0.00 0.00 4.73
3603 5327 4.074526 GCAGGGAGCAGAGACGCA 62.075 66.667 0.00 0.00 44.79 5.24
3616 5340 1.000955 ACTCTTAACACTGACGGCAGG 59.999 52.381 24.99 14.23 46.60 4.85
3618 5342 1.335597 CGACTCTTAACACTGACGGCA 60.336 52.381 0.00 0.00 0.00 5.69
3619 5343 1.337821 CGACTCTTAACACTGACGGC 58.662 55.000 0.00 0.00 0.00 5.68
3620 5344 1.337821 GCGACTCTTAACACTGACGG 58.662 55.000 0.00 0.00 0.00 4.79
3621 5345 0.975544 CGCGACTCTTAACACTGACG 59.024 55.000 0.00 0.00 0.00 4.35
3622 5346 0.708918 GCGCGACTCTTAACACTGAC 59.291 55.000 12.10 0.00 0.00 3.51
3623 5347 0.596577 AGCGCGACTCTTAACACTGA 59.403 50.000 12.10 0.00 0.00 3.41
3624 5348 0.710567 CAGCGCGACTCTTAACACTG 59.289 55.000 12.10 0.00 0.00 3.66
3625 5349 0.314302 ACAGCGCGACTCTTAACACT 59.686 50.000 12.10 0.00 0.00 3.55
3626 5350 1.973138 TACAGCGCGACTCTTAACAC 58.027 50.000 12.10 0.00 0.00 3.32
3627 5351 2.287728 TGTTACAGCGCGACTCTTAACA 60.288 45.455 12.10 17.35 0.00 2.41
3628 5352 2.322161 TGTTACAGCGCGACTCTTAAC 58.678 47.619 12.10 15.24 0.00 2.01
3629 5353 2.710220 TGTTACAGCGCGACTCTTAA 57.290 45.000 12.10 3.87 0.00 1.85
3630 5354 2.710220 TTGTTACAGCGCGACTCTTA 57.290 45.000 12.10 0.00 0.00 2.10
3631 5355 1.792949 CTTTGTTACAGCGCGACTCTT 59.207 47.619 12.10 0.00 0.00 2.85
3632 5356 1.000607 TCTTTGTTACAGCGCGACTCT 60.001 47.619 12.10 0.00 0.00 3.24
3633 5357 1.415374 TCTTTGTTACAGCGCGACTC 58.585 50.000 12.10 0.00 0.00 3.36
3634 5358 1.726791 CATCTTTGTTACAGCGCGACT 59.273 47.619 12.10 3.13 0.00 4.18
3635 5359 1.786928 GCATCTTTGTTACAGCGCGAC 60.787 52.381 12.10 0.04 0.00 5.19
3636 5360 0.442310 GCATCTTTGTTACAGCGCGA 59.558 50.000 12.10 0.00 0.00 5.87
3637 5361 0.165727 TGCATCTTTGTTACAGCGCG 59.834 50.000 0.00 0.00 0.00 6.86
3638 5362 1.464608 TCTGCATCTTTGTTACAGCGC 59.535 47.619 0.00 0.00 0.00 5.92
3639 5363 2.094894 CCTCTGCATCTTTGTTACAGCG 59.905 50.000 0.00 0.00 0.00 5.18
3640 5364 3.338249 TCCTCTGCATCTTTGTTACAGC 58.662 45.455 0.00 0.00 0.00 4.40
3641 5365 5.240891 TCTTCCTCTGCATCTTTGTTACAG 58.759 41.667 0.00 0.00 0.00 2.74
3642 5366 5.227569 TCTTCCTCTGCATCTTTGTTACA 57.772 39.130 0.00 0.00 0.00 2.41
3643 5367 4.633565 CCTCTTCCTCTGCATCTTTGTTAC 59.366 45.833 0.00 0.00 0.00 2.50
3644 5368 4.532126 TCCTCTTCCTCTGCATCTTTGTTA 59.468 41.667 0.00 0.00 0.00 2.41
3645 5369 3.328931 TCCTCTTCCTCTGCATCTTTGTT 59.671 43.478 0.00 0.00 0.00 2.83
3646 5370 2.909006 TCCTCTTCCTCTGCATCTTTGT 59.091 45.455 0.00 0.00 0.00 2.83
3647 5371 3.623906 TCCTCTTCCTCTGCATCTTTG 57.376 47.619 0.00 0.00 0.00 2.77
3648 5372 3.054508 CCTTCCTCTTCCTCTGCATCTTT 60.055 47.826 0.00 0.00 0.00 2.52
3649 5373 2.504996 CCTTCCTCTTCCTCTGCATCTT 59.495 50.000 0.00 0.00 0.00 2.40
3650 5374 2.117865 CCTTCCTCTTCCTCTGCATCT 58.882 52.381 0.00 0.00 0.00 2.90
3651 5375 2.102925 CTCCTTCCTCTTCCTCTGCATC 59.897 54.545 0.00 0.00 0.00 3.91
3652 5376 2.117865 CTCCTTCCTCTTCCTCTGCAT 58.882 52.381 0.00 0.00 0.00 3.96
3653 5377 1.077828 TCTCCTTCCTCTTCCTCTGCA 59.922 52.381 0.00 0.00 0.00 4.41
3654 5378 1.859302 TCTCCTTCCTCTTCCTCTGC 58.141 55.000 0.00 0.00 0.00 4.26
3655 5379 3.132646 CACATCTCCTTCCTCTTCCTCTG 59.867 52.174 0.00 0.00 0.00 3.35
3656 5380 3.012274 TCACATCTCCTTCCTCTTCCTCT 59.988 47.826 0.00 0.00 0.00 3.69
3657 5381 3.370104 TCACATCTCCTTCCTCTTCCTC 58.630 50.000 0.00 0.00 0.00 3.71
3658 5382 3.373830 CTCACATCTCCTTCCTCTTCCT 58.626 50.000 0.00 0.00 0.00 3.36
3659 5383 2.433970 CCTCACATCTCCTTCCTCTTCC 59.566 54.545 0.00 0.00 0.00 3.46
3660 5384 3.370104 TCCTCACATCTCCTTCCTCTTC 58.630 50.000 0.00 0.00 0.00 2.87
3661 5385 3.245948 ACTCCTCACATCTCCTTCCTCTT 60.246 47.826 0.00 0.00 0.00 2.85
3662 5386 2.314549 ACTCCTCACATCTCCTTCCTCT 59.685 50.000 0.00 0.00 0.00 3.69
3663 5387 2.745968 ACTCCTCACATCTCCTTCCTC 58.254 52.381 0.00 0.00 0.00 3.71
3664 5388 2.836981 CAACTCCTCACATCTCCTTCCT 59.163 50.000 0.00 0.00 0.00 3.36
3665 5389 2.834549 TCAACTCCTCACATCTCCTTCC 59.165 50.000 0.00 0.00 0.00 3.46
3666 5390 3.766591 TCTCAACTCCTCACATCTCCTTC 59.233 47.826 0.00 0.00 0.00 3.46
3667 5391 3.768757 CTCTCAACTCCTCACATCTCCTT 59.231 47.826 0.00 0.00 0.00 3.36
3668 5392 3.011144 TCTCTCAACTCCTCACATCTCCT 59.989 47.826 0.00 0.00 0.00 3.69
3669 5393 3.360867 TCTCTCAACTCCTCACATCTCC 58.639 50.000 0.00 0.00 0.00 3.71
3670 5394 4.677779 GCTTCTCTCAACTCCTCACATCTC 60.678 50.000 0.00 0.00 0.00 2.75
3671 5395 3.195396 GCTTCTCTCAACTCCTCACATCT 59.805 47.826 0.00 0.00 0.00 2.90
3672 5396 3.056250 TGCTTCTCTCAACTCCTCACATC 60.056 47.826 0.00 0.00 0.00 3.06
3673 5397 2.902486 TGCTTCTCTCAACTCCTCACAT 59.098 45.455 0.00 0.00 0.00 3.21
3674 5398 2.319844 TGCTTCTCTCAACTCCTCACA 58.680 47.619 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.