Multiple sequence alignment - TraesCS1B01G438100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G438100 chr1B 100.000 3458 0 0 1 3458 660530694 660527237 0.000000e+00 6386.0
1 TraesCS1B01G438100 chr1B 91.322 2420 177 9 1 2404 660964604 660962202 0.000000e+00 3275.0
2 TraesCS1B01G438100 chr1B 90.042 2129 176 27 296 2404 660684377 660682265 0.000000e+00 2724.0
3 TraesCS1B01G438100 chr1B 85.537 2178 272 31 253 2404 661055427 661053267 0.000000e+00 2237.0
4 TraesCS1B01G438100 chr1B 88.179 1895 191 23 206 2075 660746686 660744800 0.000000e+00 2228.0
5 TraesCS1B01G438100 chr1B 85.196 1986 276 11 431 2404 660950481 660948502 0.000000e+00 2023.0
6 TraesCS1B01G438100 chr1B 86.249 1709 172 33 408 2074 660723343 660721656 0.000000e+00 1796.0
7 TraesCS1B01G438100 chr1B 86.978 1413 175 5 996 2404 660914435 660913028 0.000000e+00 1581.0
8 TraesCS1B01G438100 chr1B 83.221 1639 244 18 456 2074 660997285 660995658 0.000000e+00 1474.0
9 TraesCS1B01G438100 chr1B 88.235 816 80 9 1600 2404 660798366 660797556 0.000000e+00 961.0
10 TraesCS1B01G438100 chr1B 90.097 414 25 7 2422 2834 660797445 660797047 1.100000e-144 523.0
11 TraesCS1B01G438100 chr1B 90.282 319 18 6 2522 2834 661053078 661052767 4.160000e-109 405.0
12 TraesCS1B01G438100 chr1B 95.122 246 8 3 2506 2750 660912878 660912636 5.410000e-103 385.0
13 TraesCS1B01G438100 chr1B 94.083 169 8 1 2423 2591 660948389 660948223 4.430000e-64 255.0
14 TraesCS1B01G438100 chr1B 82.759 290 42 7 2119 2404 660995577 660995292 5.730000e-63 252.0
15 TraesCS1B01G438100 chr1B 100.000 125 0 0 2956 3080 660947976 660947852 7.460000e-57 231.0
16 TraesCS1B01G438100 chr1B 92.143 140 6 2 2692 2831 660682200 660682066 3.520000e-45 193.0
17 TraesCS1B01G438100 chr1B 85.149 202 8 3 2690 2891 660948201 660948022 1.640000e-43 187.0
18 TraesCS1B01G438100 chr1B 90.083 121 11 1 215 334 660649923 660649803 4.620000e-34 156.0
19 TraesCS1B01G438100 chr1B 95.161 62 3 0 3223 3284 660682062 660682001 7.900000e-17 99.0
20 TraesCS1B01G438100 chr1B 93.651 63 4 0 3220 3282 660962098 660962036 1.020000e-15 95.3
21 TraesCS1B01G438100 chr1B 80.734 109 12 6 2472 2574 660995013 660994908 3.700000e-10 76.8
22 TraesCS1B01G438100 chr1B 100.000 29 0 0 3237 3265 677304291 677304319 2.000000e-03 54.7
23 TraesCS1B01G438100 chr1D 89.787 2164 200 16 253 2404 475178633 475176479 0.000000e+00 2752.0
24 TraesCS1B01G438100 chr1D 92.992 371 15 7 2468 2834 475176361 475175998 6.570000e-147 531.0
25 TraesCS1B01G438100 chr1D 92.958 71 5 0 3219 3289 475176001 475175931 1.700000e-18 104.0
26 TraesCS1B01G438100 chr1A 88.006 2176 219 29 253 2404 570862409 570860252 0.000000e+00 2534.0
27 TraesCS1B01G438100 chr1A 89.614 414 19 9 2423 2818 570860135 570859728 3.980000e-139 505.0
28 TraesCS1B01G438100 chr1A 90.909 66 4 2 3221 3285 570859725 570859661 1.710000e-13 87.9
29 TraesCS1B01G438100 chr1A 100.000 29 0 0 3237 3265 583989207 583989235 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G438100 chr1B 660527237 660530694 3457 True 6386.000000 6386 100.000000 1 3458 1 chr1B.!!$R1 3457
1 TraesCS1B01G438100 chr1B 660744800 660746686 1886 True 2228.000000 2228 88.179000 206 2075 1 chr1B.!!$R4 1869
2 TraesCS1B01G438100 chr1B 660721656 660723343 1687 True 1796.000000 1796 86.249000 408 2074 1 chr1B.!!$R3 1666
3 TraesCS1B01G438100 chr1B 660962036 660964604 2568 True 1685.150000 3275 92.486500 1 3282 2 chr1B.!!$R9 3281
4 TraesCS1B01G438100 chr1B 661052767 661055427 2660 True 1321.000000 2237 87.909500 253 2834 2 chr1B.!!$R11 2581
5 TraesCS1B01G438100 chr1B 660682001 660684377 2376 True 1005.333333 2724 92.448667 296 3284 3 chr1B.!!$R5 2988
6 TraesCS1B01G438100 chr1B 660912636 660914435 1799 True 983.000000 1581 91.050000 996 2750 2 chr1B.!!$R7 1754
7 TraesCS1B01G438100 chr1B 660797047 660798366 1319 True 742.000000 961 89.166000 1600 2834 2 chr1B.!!$R6 1234
8 TraesCS1B01G438100 chr1B 660947852 660950481 2629 True 674.000000 2023 91.107000 431 3080 4 chr1B.!!$R8 2649
9 TraesCS1B01G438100 chr1B 660994908 660997285 2377 True 600.933333 1474 82.238000 456 2574 3 chr1B.!!$R10 2118
10 TraesCS1B01G438100 chr1D 475175931 475178633 2702 True 1129.000000 2752 91.912333 253 3289 3 chr1D.!!$R1 3036
11 TraesCS1B01G438100 chr1A 570859661 570862409 2748 True 1042.300000 2534 89.509667 253 3285 3 chr1A.!!$R1 3032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 98 0.679002 GCTCCATGTGCACACAGGAT 60.679 55.0 31.72 12.88 45.01 3.24 F
1724 1780 0.250124 TTCATGCAAACCGACGACCT 60.250 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1864 0.319211 TGGGTTACAGAACAGACGCG 60.319 55.0 3.53 3.53 37.29 6.01 R
3434 3828 0.034756 ACCGTGTGATAGCTGTGCAA 59.965 50.0 0.00 0.00 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.879400 CATCTCGTCTGGATGGCTGC 60.879 60.000 0.00 0.00 37.50 5.25
89 98 0.679002 GCTCCATGTGCACACAGGAT 60.679 55.000 31.72 12.88 45.01 3.24
90 99 1.092348 CTCCATGTGCACACAGGATG 58.908 55.000 31.72 23.78 45.01 3.51
110 119 7.123247 CAGGATGGAGAACAAAGGACAAAATAT 59.877 37.037 0.00 0.00 0.00 1.28
111 120 8.336235 AGGATGGAGAACAAAGGACAAAATATA 58.664 33.333 0.00 0.00 0.00 0.86
112 121 8.624776 GGATGGAGAACAAAGGACAAAATATAG 58.375 37.037 0.00 0.00 0.00 1.31
113 122 7.938140 TGGAGAACAAAGGACAAAATATAGG 57.062 36.000 0.00 0.00 0.00 2.57
114 123 7.466804 TGGAGAACAAAGGACAAAATATAGGT 58.533 34.615 0.00 0.00 0.00 3.08
115 124 7.610305 TGGAGAACAAAGGACAAAATATAGGTC 59.390 37.037 0.00 0.00 0.00 3.85
123 132 6.844097 GGACAAAATATAGGTCCCACAAAA 57.156 37.500 8.48 0.00 44.21 2.44
124 133 7.234661 GGACAAAATATAGGTCCCACAAAAA 57.765 36.000 8.48 0.00 44.21 1.94
171 180 6.509656 ACATCACATGAATCATTATGGTTGC 58.490 36.000 0.00 0.00 0.00 4.17
172 181 6.097129 ACATCACATGAATCATTATGGTTGCA 59.903 34.615 0.00 0.00 0.00 4.08
176 185 8.693625 TCACATGAATCATTATGGTTGCAAATA 58.306 29.630 0.00 0.00 0.00 1.40
190 199 5.333263 GGTTGCAAATAGTTGATGTTTGTGC 60.333 40.000 7.18 0.00 40.90 4.57
193 202 5.691305 TGCAAATAGTTGATGTTTGTGCTTC 59.309 36.000 7.18 0.00 40.90 3.86
195 204 7.083858 GCAAATAGTTGATGTTTGTGCTTCTA 58.916 34.615 7.18 0.00 40.90 2.10
196 205 7.061094 GCAAATAGTTGATGTTTGTGCTTCTAC 59.939 37.037 7.18 0.00 40.90 2.59
245 254 9.221933 TGAAACTCAAACTTGACACTAGTTTAA 57.778 29.630 5.21 0.00 42.32 1.52
446 465 8.504812 TCTTTGCATATATCAAGTTAAGTGCA 57.495 30.769 0.00 0.00 39.31 4.57
482 502 9.016623 CATCACAATAATGACAATGCTTAACAG 57.983 33.333 0.00 0.00 0.00 3.16
640 664 7.977818 AGCTAATCTATGTTGTTCCATATCCA 58.022 34.615 0.00 0.00 0.00 3.41
651 675 3.949586 TCCATATCCAATGAGCAACCA 57.050 42.857 0.00 0.00 0.00 3.67
686 710 6.684865 GCACCTCTAGATGATGTTGATTCTCA 60.685 42.308 1.64 0.00 0.00 3.27
742 766 5.488262 TGATTCATGTCCTTCTGAACTGA 57.512 39.130 0.00 0.00 34.43 3.41
750 774 5.360591 TGTCCTTCTGAACTGAAAGAAGTC 58.639 41.667 10.57 5.31 45.24 3.01
827 851 4.305989 CAAGTTTGCTTGCCAGTAAGAA 57.694 40.909 0.00 0.00 44.54 2.52
891 915 5.929992 TGGTACTGGTTCTTCGTTTGATAAG 59.070 40.000 0.00 0.00 0.00 1.73
910 934 3.757947 AGGATGGGAACTTAAAAGGGG 57.242 47.619 0.00 0.00 0.00 4.79
976 1000 5.465724 CACCTGAAGACTTGTTTACTGTACC 59.534 44.000 0.00 0.00 0.00 3.34
1101 1125 7.659652 AGTAGCAGAGAACTGTTTTAATGAC 57.340 36.000 0.00 0.00 45.04 3.06
1224 1248 7.387673 TCTTTATCAGACGAAGAGAATTTTGCA 59.612 33.333 0.00 0.00 0.00 4.08
1469 1505 8.807581 GGAAAACAAGCATGTAAAACATATAGC 58.192 33.333 0.00 0.00 39.40 2.97
1505 1541 4.439289 GCTGAGGTATTTGAGAATTGGCAC 60.439 45.833 0.00 0.00 0.00 5.01
1617 1661 1.004320 ATCAACCGTGGCGCAGTTA 60.004 52.632 10.83 0.00 0.00 2.24
1645 1689 1.742831 TGGTGCGCCTATTTGTCAATC 59.257 47.619 18.96 0.00 35.27 2.67
1647 1691 0.376852 TGCGCCTATTTGTCAATCGC 59.623 50.000 4.18 0.00 41.22 4.58
1655 1699 3.988379 ATTTGTCAATCGCAACACACT 57.012 38.095 0.00 0.00 0.00 3.55
1686 1742 0.669625 GTGGGTTCCGTAGTCTGCAC 60.670 60.000 0.00 0.00 0.00 4.57
1724 1780 0.250124 TTCATGCAAACCGACGACCT 60.250 50.000 0.00 0.00 0.00 3.85
1728 1784 1.246649 TGCAAACCGACGACCTAGTA 58.753 50.000 0.00 0.00 0.00 1.82
1789 1848 5.371526 ACCTTCGGTATCTTCGTACTGATA 58.628 41.667 0.00 0.00 39.14 2.15
1790 1849 6.002704 ACCTTCGGTATCTTCGTACTGATAT 58.997 40.000 0.00 0.00 39.14 1.63
1802 1864 4.755629 TCGTACTGATATAGAGACAGCCAC 59.244 45.833 0.00 0.00 35.38 5.01
1874 1945 8.754080 TCTTAAAATTCAGTCAGGTTTTGGAAA 58.246 29.630 0.00 0.00 0.00 3.13
2034 2106 6.285990 GGCCATTAATGAAAAGCTGATCATT 58.714 36.000 23.17 23.17 45.54 2.57
2043 2115 5.412594 TGAAAAGCTGATCATTGGTAGTGAC 59.587 40.000 0.00 0.00 0.00 3.67
2090 2165 2.159028 GCTTCCGCTATTCACTCTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
2102 2177 9.522804 CTATTCACTCTTCCTTACTCATGTTAC 57.477 37.037 0.00 0.00 0.00 2.50
2110 2185 8.375506 TCTTCCTTACTCATGTTACAGTGAAAT 58.624 33.333 0.00 0.00 0.00 2.17
2243 2354 2.203126 CGAGCATCTTCCAGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
2248 2359 1.453379 CATCTTCCAGGCCCTGCAG 60.453 63.158 4.81 6.78 0.00 4.41
2309 2420 0.413832 AGGGTGAAGGCTCTGGAGTA 59.586 55.000 0.00 0.00 0.00 2.59
2348 2459 4.428845 CTTGCTCCCCAAGTGCAT 57.571 55.556 0.00 0.00 44.04 3.96
2369 2480 0.529833 ATCCGTGTCAGCAGAGTCTG 59.470 55.000 16.21 16.21 35.46 3.51
2379 2490 3.193056 TCAGCAGAGTCTGTGAAGATCAG 59.807 47.826 21.06 0.42 35.63 2.90
2384 2495 5.163571 GCAGAGTCTGTGAAGATCAGATGTA 60.164 44.000 21.06 0.00 42.63 2.29
2404 2515 5.277250 TGTATAAGGATGACAAGGAGTGGA 58.723 41.667 0.00 0.00 0.00 4.02
2405 2516 4.762289 ATAAGGATGACAAGGAGTGGAC 57.238 45.455 0.00 0.00 0.00 4.02
2406 2517 1.280457 AGGATGACAAGGAGTGGACC 58.720 55.000 0.00 0.00 0.00 4.46
2416 2599 0.037232 GGAGTGGACCAGAAACGAGG 60.037 60.000 0.00 0.00 0.00 4.63
2419 2602 2.046217 GGACCAGAAACGAGGGGC 60.046 66.667 0.00 0.00 0.00 5.80
2420 2603 2.747686 GACCAGAAACGAGGGGCA 59.252 61.111 0.00 0.00 0.00 5.36
2428 2691 4.081697 CCAGAAACGAGGGGCAATTTTTAT 60.082 41.667 0.00 0.00 0.00 1.40
2538 2893 5.599999 GAGAATCCAGTCCTGCTACTTAA 57.400 43.478 0.00 0.00 0.00 1.85
2539 2894 6.168270 GAGAATCCAGTCCTGCTACTTAAT 57.832 41.667 0.00 0.00 0.00 1.40
2566 2921 0.961019 GTCTGCAATTCAACTGGCCA 59.039 50.000 4.71 4.71 0.00 5.36
2685 3048 3.991924 ATCTGTCGCCAGCCTCCCT 62.992 63.158 0.00 0.00 38.66 4.20
2760 3124 1.898574 CGCTGTTGGGGAAGCTTGT 60.899 57.895 2.10 0.00 37.27 3.16
2808 3173 1.620822 ACTCTTGTGGTGGCAAATCC 58.379 50.000 0.00 0.00 0.00 3.01
2809 3174 1.133513 ACTCTTGTGGTGGCAAATCCA 60.134 47.619 0.00 0.00 44.18 3.41
2844 3209 0.648958 GTGTACGATTTACGCAGGCC 59.351 55.000 0.00 0.00 46.94 5.19
2845 3210 0.246910 TGTACGATTTACGCAGGCCA 59.753 50.000 5.01 0.00 46.94 5.36
2858 3223 1.952367 GCAGGCCAAACTGAGCTATGT 60.952 52.381 5.01 0.00 40.97 2.29
2865 3230 4.067896 CCAAACTGAGCTATGTGTCTTGT 58.932 43.478 0.00 0.00 0.00 3.16
2908 3302 3.092301 GGGGCAAAAGTTCAGAGCTATT 58.908 45.455 0.00 0.00 0.00 1.73
2909 3303 3.129462 GGGGCAAAAGTTCAGAGCTATTC 59.871 47.826 0.00 0.00 0.00 1.75
2910 3304 4.013050 GGGCAAAAGTTCAGAGCTATTCT 58.987 43.478 0.00 0.00 36.25 2.40
2911 3305 4.095632 GGGCAAAAGTTCAGAGCTATTCTC 59.904 45.833 0.00 0.00 42.21 2.87
2922 3316 4.005487 GAGCTATTCTCTGCCATCATGT 57.995 45.455 0.00 0.00 38.78 3.21
2923 3317 5.144692 GAGCTATTCTCTGCCATCATGTA 57.855 43.478 0.00 0.00 38.78 2.29
2924 3318 5.545588 GAGCTATTCTCTGCCATCATGTAA 58.454 41.667 0.00 0.00 38.78 2.41
2925 3319 6.124316 AGCTATTCTCTGCCATCATGTAAT 57.876 37.500 0.00 0.00 0.00 1.89
2926 3320 6.540995 AGCTATTCTCTGCCATCATGTAATT 58.459 36.000 0.00 0.00 0.00 1.40
2927 3321 6.430308 AGCTATTCTCTGCCATCATGTAATTG 59.570 38.462 0.00 0.00 0.00 2.32
2928 3322 6.206243 GCTATTCTCTGCCATCATGTAATTGT 59.794 38.462 0.00 0.00 0.00 2.71
2929 3323 6.630444 ATTCTCTGCCATCATGTAATTGTC 57.370 37.500 0.00 0.00 0.00 3.18
2930 3324 5.101648 TCTCTGCCATCATGTAATTGTCA 57.898 39.130 0.00 0.00 0.00 3.58
2931 3325 4.877823 TCTCTGCCATCATGTAATTGTCAC 59.122 41.667 0.00 0.00 0.00 3.67
2932 3326 3.947196 TCTGCCATCATGTAATTGTCACC 59.053 43.478 0.00 0.00 0.00 4.02
2933 3327 3.949754 CTGCCATCATGTAATTGTCACCT 59.050 43.478 0.00 0.00 0.00 4.00
2934 3328 3.695556 TGCCATCATGTAATTGTCACCTG 59.304 43.478 0.00 0.00 0.00 4.00
2935 3329 3.489738 GCCATCATGTAATTGTCACCTGC 60.490 47.826 0.00 0.00 0.00 4.85
2936 3330 3.242837 CCATCATGTAATTGTCACCTGCG 60.243 47.826 0.00 0.00 0.00 5.18
2937 3331 3.326836 TCATGTAATTGTCACCTGCGA 57.673 42.857 0.00 0.00 0.00 5.10
2938 3332 3.000041 TCATGTAATTGTCACCTGCGAC 59.000 45.455 0.00 0.00 36.40 5.19
2939 3333 2.831685 TGTAATTGTCACCTGCGACT 57.168 45.000 0.00 0.00 36.82 4.18
2940 3334 2.412870 TGTAATTGTCACCTGCGACTG 58.587 47.619 0.00 0.00 36.82 3.51
2941 3335 2.036604 TGTAATTGTCACCTGCGACTGA 59.963 45.455 0.00 0.00 36.82 3.41
2942 3336 1.512926 AATTGTCACCTGCGACTGAC 58.487 50.000 0.00 1.50 37.83 3.51
2943 3337 0.320771 ATTGTCACCTGCGACTGACC 60.321 55.000 5.33 0.00 36.70 4.02
2944 3338 2.430921 GTCACCTGCGACTGACCG 60.431 66.667 0.00 0.00 32.15 4.79
2945 3339 2.596338 TCACCTGCGACTGACCGA 60.596 61.111 0.00 0.00 0.00 4.69
2946 3340 2.430921 CACCTGCGACTGACCGAC 60.431 66.667 0.00 0.00 0.00 4.79
2947 3341 2.597805 ACCTGCGACTGACCGACT 60.598 61.111 0.00 0.00 0.00 4.18
2948 3342 1.303074 ACCTGCGACTGACCGACTA 60.303 57.895 0.00 0.00 0.00 2.59
2949 3343 1.306642 ACCTGCGACTGACCGACTAG 61.307 60.000 0.00 0.00 0.00 2.57
2950 3344 1.025113 CCTGCGACTGACCGACTAGA 61.025 60.000 0.00 0.00 0.00 2.43
2951 3345 1.018148 CTGCGACTGACCGACTAGAT 58.982 55.000 0.00 0.00 0.00 1.98
2952 3346 1.003331 CTGCGACTGACCGACTAGATC 60.003 57.143 0.00 0.00 0.00 2.75
3080 3474 0.742505 CATGCAAGTCGCCATCCAAT 59.257 50.000 0.00 0.00 41.33 3.16
3081 3475 1.135527 CATGCAAGTCGCCATCCAATT 59.864 47.619 0.00 0.00 41.33 2.32
3082 3476 0.810648 TGCAAGTCGCCATCCAATTC 59.189 50.000 0.00 0.00 41.33 2.17
3083 3477 0.101219 GCAAGTCGCCATCCAATTCC 59.899 55.000 0.00 0.00 32.94 3.01
3084 3478 1.462616 CAAGTCGCCATCCAATTCCA 58.537 50.000 0.00 0.00 0.00 3.53
3085 3479 1.818060 CAAGTCGCCATCCAATTCCAA 59.182 47.619 0.00 0.00 0.00 3.53
3086 3480 2.214376 AGTCGCCATCCAATTCCAAA 57.786 45.000 0.00 0.00 0.00 3.28
3087 3481 2.738743 AGTCGCCATCCAATTCCAAAT 58.261 42.857 0.00 0.00 0.00 2.32
3088 3482 2.428171 AGTCGCCATCCAATTCCAAATG 59.572 45.455 0.00 0.00 0.00 2.32
3089 3483 2.426738 GTCGCCATCCAATTCCAAATGA 59.573 45.455 0.00 0.00 0.00 2.57
3090 3484 3.068590 GTCGCCATCCAATTCCAAATGAT 59.931 43.478 0.00 0.00 0.00 2.45
3091 3485 3.318839 TCGCCATCCAATTCCAAATGATC 59.681 43.478 0.00 0.00 0.00 2.92
3092 3486 3.645884 GCCATCCAATTCCAAATGATCG 58.354 45.455 0.00 0.00 0.00 3.69
3093 3487 3.318839 GCCATCCAATTCCAAATGATCGA 59.681 43.478 0.00 0.00 0.00 3.59
3094 3488 4.558095 GCCATCCAATTCCAAATGATCGAG 60.558 45.833 0.00 0.00 0.00 4.04
3095 3489 4.823442 CCATCCAATTCCAAATGATCGAGA 59.177 41.667 0.00 0.00 0.00 4.04
3096 3490 5.048921 CCATCCAATTCCAAATGATCGAGAG 60.049 44.000 0.00 0.00 0.00 3.20
3097 3491 5.102953 TCCAATTCCAAATGATCGAGAGT 57.897 39.130 0.00 0.00 0.00 3.24
3098 3492 5.500234 TCCAATTCCAAATGATCGAGAGTT 58.500 37.500 0.00 0.00 0.00 3.01
3099 3493 5.586243 TCCAATTCCAAATGATCGAGAGTTC 59.414 40.000 0.00 0.00 0.00 3.01
3100 3494 5.355071 CCAATTCCAAATGATCGAGAGTTCA 59.645 40.000 0.00 0.00 43.28 3.18
3101 3495 6.457934 CCAATTCCAAATGATCGAGAGTTCAG 60.458 42.308 0.00 0.00 42.49 3.02
3102 3496 4.128925 TCCAAATGATCGAGAGTTCAGG 57.871 45.455 0.00 0.00 42.49 3.86
3103 3497 3.769300 TCCAAATGATCGAGAGTTCAGGA 59.231 43.478 0.00 0.00 42.49 3.86
3104 3498 3.868077 CCAAATGATCGAGAGTTCAGGAC 59.132 47.826 0.00 0.00 42.49 3.85
3105 3499 3.428746 AATGATCGAGAGTTCAGGACG 57.571 47.619 0.00 0.00 42.49 4.79
3106 3500 0.452184 TGATCGAGAGTTCAGGACGC 59.548 55.000 0.00 0.00 35.07 5.19
3107 3501 0.452184 GATCGAGAGTTCAGGACGCA 59.548 55.000 0.00 0.00 0.00 5.24
3108 3502 0.171455 ATCGAGAGTTCAGGACGCAC 59.829 55.000 0.00 0.00 0.00 5.34
3109 3503 1.797933 CGAGAGTTCAGGACGCACG 60.798 63.158 0.00 0.00 36.12 5.34
3110 3504 1.579932 GAGAGTTCAGGACGCACGA 59.420 57.895 0.00 0.00 0.00 4.35
3111 3505 0.729816 GAGAGTTCAGGACGCACGAC 60.730 60.000 0.00 0.00 0.00 4.34
3112 3506 1.173444 AGAGTTCAGGACGCACGACT 61.173 55.000 0.00 0.00 0.00 4.18
3113 3507 0.318784 GAGTTCAGGACGCACGACTT 60.319 55.000 0.00 0.00 0.00 3.01
3114 3508 0.597637 AGTTCAGGACGCACGACTTG 60.598 55.000 0.00 0.00 0.00 3.16
3115 3509 0.874607 GTTCAGGACGCACGACTTGT 60.875 55.000 0.00 0.00 0.00 3.16
3116 3510 0.669619 TTCAGGACGCACGACTTGTA 59.330 50.000 0.00 0.00 0.00 2.41
3117 3511 0.669619 TCAGGACGCACGACTTGTAA 59.330 50.000 0.00 0.00 0.00 2.41
3118 3512 1.271379 TCAGGACGCACGACTTGTAAT 59.729 47.619 0.00 0.00 0.00 1.89
3119 3513 2.066262 CAGGACGCACGACTTGTAATT 58.934 47.619 0.00 0.00 0.00 1.40
3120 3514 2.478894 CAGGACGCACGACTTGTAATTT 59.521 45.455 0.00 0.00 0.00 1.82
3121 3515 3.059188 CAGGACGCACGACTTGTAATTTT 60.059 43.478 0.00 0.00 0.00 1.82
3122 3516 3.059188 AGGACGCACGACTTGTAATTTTG 60.059 43.478 0.00 0.00 0.00 2.44
3123 3517 3.223157 GACGCACGACTTGTAATTTTGG 58.777 45.455 0.00 0.00 0.00 3.28
3124 3518 2.873472 ACGCACGACTTGTAATTTTGGA 59.127 40.909 0.00 0.00 0.00 3.53
3125 3519 3.312973 ACGCACGACTTGTAATTTTGGAA 59.687 39.130 0.00 0.00 0.00 3.53
3126 3520 3.906008 CGCACGACTTGTAATTTTGGAAG 59.094 43.478 0.00 0.00 0.00 3.46
3127 3521 3.668656 GCACGACTTGTAATTTTGGAAGC 59.331 43.478 0.00 0.00 0.00 3.86
3128 3522 3.906008 CACGACTTGTAATTTTGGAAGCG 59.094 43.478 0.00 0.00 0.00 4.68
3129 3523 3.810941 ACGACTTGTAATTTTGGAAGCGA 59.189 39.130 0.00 0.00 0.00 4.93
3130 3524 4.454504 ACGACTTGTAATTTTGGAAGCGAT 59.545 37.500 0.00 0.00 0.00 4.58
3131 3525 5.022021 CGACTTGTAATTTTGGAAGCGATC 58.978 41.667 0.00 0.00 0.00 3.69
3132 3526 5.163854 CGACTTGTAATTTTGGAAGCGATCT 60.164 40.000 0.00 0.00 0.00 2.75
3133 3527 6.183309 ACTTGTAATTTTGGAAGCGATCTC 57.817 37.500 0.00 0.00 0.00 2.75
3134 3528 5.940470 ACTTGTAATTTTGGAAGCGATCTCT 59.060 36.000 0.00 0.00 0.00 3.10
3135 3529 6.092807 ACTTGTAATTTTGGAAGCGATCTCTC 59.907 38.462 0.00 0.00 0.00 3.20
3136 3530 5.734720 TGTAATTTTGGAAGCGATCTCTCT 58.265 37.500 0.00 0.00 0.00 3.10
3137 3531 6.873997 TGTAATTTTGGAAGCGATCTCTCTA 58.126 36.000 0.00 0.00 0.00 2.43
3138 3532 6.980978 TGTAATTTTGGAAGCGATCTCTCTAG 59.019 38.462 0.00 0.00 0.00 2.43
3139 3533 5.860941 ATTTTGGAAGCGATCTCTCTAGA 57.139 39.130 0.00 0.00 35.80 2.43
3140 3534 4.909696 TTTGGAAGCGATCTCTCTAGAG 57.090 45.455 13.98 13.98 43.36 2.43
3141 3535 3.569194 TGGAAGCGATCTCTCTAGAGT 57.431 47.619 19.21 0.00 42.60 3.24
3142 3536 3.472652 TGGAAGCGATCTCTCTAGAGTC 58.527 50.000 19.21 8.98 42.60 3.36
3143 3537 3.118223 TGGAAGCGATCTCTCTAGAGTCA 60.118 47.826 19.21 7.66 42.60 3.41
3144 3538 3.880490 GGAAGCGATCTCTCTAGAGTCAA 59.120 47.826 19.21 6.77 42.60 3.18
3145 3539 4.336993 GGAAGCGATCTCTCTAGAGTCAAA 59.663 45.833 19.21 4.40 42.60 2.69
3146 3540 5.499139 AAGCGATCTCTCTAGAGTCAAAG 57.501 43.478 19.21 9.49 42.60 2.77
3147 3541 3.315191 AGCGATCTCTCTAGAGTCAAAGC 59.685 47.826 19.21 18.31 42.60 3.51
3148 3542 3.315191 GCGATCTCTCTAGAGTCAAAGCT 59.685 47.826 19.21 1.08 42.60 3.74
3149 3543 4.202010 GCGATCTCTCTAGAGTCAAAGCTT 60.202 45.833 19.21 0.00 42.60 3.74
3150 3544 5.510671 CGATCTCTCTAGAGTCAAAGCTTC 58.489 45.833 19.21 8.62 42.60 3.86
3151 3545 5.505654 CGATCTCTCTAGAGTCAAAGCTTCC 60.506 48.000 19.21 0.00 42.60 3.46
3152 3546 3.692101 TCTCTCTAGAGTCAAAGCTTCCG 59.308 47.826 19.21 0.00 42.60 4.30
3153 3547 2.755655 TCTCTAGAGTCAAAGCTTCCGG 59.244 50.000 19.21 0.00 0.00 5.14
3154 3548 1.204941 TCTAGAGTCAAAGCTTCCGGC 59.795 52.381 0.00 0.00 42.19 6.13
3155 3549 0.973632 TAGAGTCAAAGCTTCCGGCA 59.026 50.000 0.00 0.00 44.79 5.69
3156 3550 0.326264 AGAGTCAAAGCTTCCGGCAT 59.674 50.000 0.00 0.00 44.79 4.40
3157 3551 0.449388 GAGTCAAAGCTTCCGGCATG 59.551 55.000 0.00 0.00 44.79 4.06
3158 3552 0.250901 AGTCAAAGCTTCCGGCATGT 60.251 50.000 0.00 0.00 44.79 3.21
3159 3553 0.169009 GTCAAAGCTTCCGGCATGTC 59.831 55.000 0.00 0.00 44.79 3.06
3160 3554 1.135315 CAAAGCTTCCGGCATGTCG 59.865 57.895 13.99 13.99 44.79 4.35
3161 3555 1.003839 AAAGCTTCCGGCATGTCGA 60.004 52.632 23.62 4.32 44.79 4.20
3162 3556 0.392998 AAAGCTTCCGGCATGTCGAT 60.393 50.000 23.62 0.00 44.79 3.59
3163 3557 0.811616 AAGCTTCCGGCATGTCGATC 60.812 55.000 23.62 6.81 44.79 3.69
3164 3558 2.247437 GCTTCCGGCATGTCGATCC 61.247 63.158 23.62 2.43 41.35 3.36
3165 3559 1.143838 CTTCCGGCATGTCGATCCA 59.856 57.895 23.62 0.00 0.00 3.41
3166 3560 0.877649 CTTCCGGCATGTCGATCCAG 60.878 60.000 23.62 7.14 0.00 3.86
3167 3561 1.613317 TTCCGGCATGTCGATCCAGT 61.613 55.000 23.62 0.00 0.00 4.00
3168 3562 1.592669 CCGGCATGTCGATCCAGTC 60.593 63.158 23.62 0.00 0.00 3.51
3177 3571 3.036026 CGATCCAGTCGTCAGGTTG 57.964 57.895 0.00 0.00 45.19 3.77
3178 3572 0.458543 CGATCCAGTCGTCAGGTTGG 60.459 60.000 0.00 0.00 45.19 3.77
3179 3573 0.608640 GATCCAGTCGTCAGGTTGGT 59.391 55.000 0.00 0.00 32.51 3.67
3180 3574 0.608640 ATCCAGTCGTCAGGTTGGTC 59.391 55.000 0.00 0.00 32.51 4.02
3181 3575 1.004918 CCAGTCGTCAGGTTGGTCC 60.005 63.158 0.00 0.00 0.00 4.46
3182 3576 1.004918 CAGTCGTCAGGTTGGTCCC 60.005 63.158 0.00 0.00 36.75 4.46
3183 3577 1.152312 AGTCGTCAGGTTGGTCCCT 60.152 57.895 0.00 0.00 36.75 4.20
3184 3578 0.763223 AGTCGTCAGGTTGGTCCCTT 60.763 55.000 0.00 0.00 36.75 3.95
3185 3579 0.602905 GTCGTCAGGTTGGTCCCTTG 60.603 60.000 0.00 0.00 36.75 3.61
3186 3580 1.966451 CGTCAGGTTGGTCCCTTGC 60.966 63.158 0.00 0.00 36.75 4.01
3187 3581 1.456287 GTCAGGTTGGTCCCTTGCT 59.544 57.895 0.00 0.00 36.75 3.91
3188 3582 0.690762 GTCAGGTTGGTCCCTTGCTA 59.309 55.000 0.00 0.00 36.75 3.49
3189 3583 0.690762 TCAGGTTGGTCCCTTGCTAC 59.309 55.000 0.00 0.00 36.75 3.58
3190 3584 0.693049 CAGGTTGGTCCCTTGCTACT 59.307 55.000 0.00 0.00 36.75 2.57
3191 3585 0.984995 AGGTTGGTCCCTTGCTACTC 59.015 55.000 0.00 0.00 36.75 2.59
3192 3586 0.984995 GGTTGGTCCCTTGCTACTCT 59.015 55.000 0.00 0.00 0.00 3.24
3193 3587 1.339151 GGTTGGTCCCTTGCTACTCTG 60.339 57.143 0.00 0.00 0.00 3.35
3194 3588 0.324943 TTGGTCCCTTGCTACTCTGC 59.675 55.000 0.00 0.00 0.00 4.26
3195 3589 0.545309 TGGTCCCTTGCTACTCTGCT 60.545 55.000 0.00 0.00 0.00 4.24
3196 3590 0.176910 GGTCCCTTGCTACTCTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
3197 3591 0.179124 GTCCCTTGCTACTCTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
3198 3592 0.612174 TCCCTTGCTACTCTGCTCGT 60.612 55.000 0.00 0.00 0.00 4.18
3199 3593 1.103803 CCCTTGCTACTCTGCTCGTA 58.896 55.000 0.00 0.00 0.00 3.43
3200 3594 1.476891 CCCTTGCTACTCTGCTCGTAA 59.523 52.381 0.00 0.00 0.00 3.18
3201 3595 2.480416 CCCTTGCTACTCTGCTCGTAAG 60.480 54.545 0.00 0.00 0.00 2.34
3202 3596 2.164624 CCTTGCTACTCTGCTCGTAAGT 59.835 50.000 0.00 0.00 39.48 2.24
3203 3597 2.921634 TGCTACTCTGCTCGTAAGTG 57.078 50.000 0.00 0.00 39.48 3.16
3204 3598 2.160205 TGCTACTCTGCTCGTAAGTGT 58.840 47.619 0.00 0.00 39.48 3.55
3205 3599 2.557056 TGCTACTCTGCTCGTAAGTGTT 59.443 45.455 0.00 0.00 39.48 3.32
3206 3600 2.917971 GCTACTCTGCTCGTAAGTGTTG 59.082 50.000 0.00 0.00 39.48 3.33
3207 3601 2.440539 ACTCTGCTCGTAAGTGTTGG 57.559 50.000 0.00 0.00 39.48 3.77
3208 3602 1.961394 ACTCTGCTCGTAAGTGTTGGA 59.039 47.619 0.00 0.00 39.48 3.53
3209 3603 2.364324 ACTCTGCTCGTAAGTGTTGGAA 59.636 45.455 0.00 0.00 39.48 3.53
3210 3604 3.006967 ACTCTGCTCGTAAGTGTTGGAAT 59.993 43.478 0.00 0.00 39.48 3.01
3211 3605 3.997021 CTCTGCTCGTAAGTGTTGGAATT 59.003 43.478 0.00 0.00 39.48 2.17
3212 3606 3.994392 TCTGCTCGTAAGTGTTGGAATTC 59.006 43.478 0.00 0.00 39.48 2.17
3213 3607 3.071479 TGCTCGTAAGTGTTGGAATTCC 58.929 45.455 18.17 18.17 39.48 3.01
3214 3608 3.071479 GCTCGTAAGTGTTGGAATTCCA 58.929 45.455 23.63 23.63 41.31 3.53
3215 3609 3.120304 GCTCGTAAGTGTTGGAATTCCAC 60.120 47.826 27.04 20.43 42.30 4.02
3216 3610 3.404899 TCGTAAGTGTTGGAATTCCACC 58.595 45.455 27.04 20.77 42.30 4.61
3217 3611 4.108444 TCGTAAGTGTTGGAATTCCACCG 61.108 47.826 27.04 17.81 42.30 4.94
3235 3629 3.308595 CACCGCGATAATTGAAGTAAGCA 59.691 43.478 8.23 0.00 0.00 3.91
3265 3659 1.279271 ACTGGGACTGAACATGCTACC 59.721 52.381 0.00 0.00 0.00 3.18
3289 3683 1.880027 GTCCACTGATCTGCCGTTTTT 59.120 47.619 0.00 0.00 0.00 1.94
3290 3684 1.879380 TCCACTGATCTGCCGTTTTTG 59.121 47.619 0.00 0.00 0.00 2.44
3291 3685 1.608590 CCACTGATCTGCCGTTTTTGT 59.391 47.619 0.00 0.00 0.00 2.83
3292 3686 2.811431 CCACTGATCTGCCGTTTTTGTA 59.189 45.455 0.00 0.00 0.00 2.41
3293 3687 3.440173 CCACTGATCTGCCGTTTTTGTAT 59.560 43.478 0.00 0.00 0.00 2.29
3294 3688 4.437390 CCACTGATCTGCCGTTTTTGTATC 60.437 45.833 0.00 0.00 0.00 2.24
3295 3689 3.689649 ACTGATCTGCCGTTTTTGTATCC 59.310 43.478 0.00 0.00 0.00 2.59
3296 3690 3.680490 TGATCTGCCGTTTTTGTATCCA 58.320 40.909 0.00 0.00 0.00 3.41
3297 3691 3.438781 TGATCTGCCGTTTTTGTATCCAC 59.561 43.478 0.00 0.00 0.00 4.02
3298 3692 2.852449 TCTGCCGTTTTTGTATCCACA 58.148 42.857 0.00 0.00 0.00 4.17
3299 3693 2.811431 TCTGCCGTTTTTGTATCCACAG 59.189 45.455 0.00 0.00 35.67 3.66
3300 3694 1.883275 TGCCGTTTTTGTATCCACAGG 59.117 47.619 0.00 0.00 35.67 4.00
3301 3695 2.156098 GCCGTTTTTGTATCCACAGGA 58.844 47.619 0.00 0.00 35.67 3.86
3302 3696 2.752903 GCCGTTTTTGTATCCACAGGAT 59.247 45.455 3.74 3.74 45.40 3.24
3303 3697 3.427503 GCCGTTTTTGTATCCACAGGATG 60.428 47.826 8.76 0.00 43.06 3.51
3314 3708 1.815003 CCACAGGATGGTTCAAGAAGC 59.185 52.381 5.12 5.12 44.46 3.86
3315 3709 2.553904 CCACAGGATGGTTCAAGAAGCT 60.554 50.000 12.54 0.00 44.46 3.74
3316 3710 3.152341 CACAGGATGGTTCAAGAAGCTT 58.848 45.455 0.00 0.00 43.62 3.74
3317 3711 3.571401 CACAGGATGGTTCAAGAAGCTTT 59.429 43.478 12.54 1.54 43.62 3.51
3318 3712 4.038402 CACAGGATGGTTCAAGAAGCTTTT 59.962 41.667 12.54 0.00 43.62 2.27
3319 3713 4.279420 ACAGGATGGTTCAAGAAGCTTTTC 59.721 41.667 12.54 7.34 43.62 2.29
3320 3714 4.279169 CAGGATGGTTCAAGAAGCTTTTCA 59.721 41.667 12.54 0.00 39.38 2.69
3321 3715 4.895297 AGGATGGTTCAAGAAGCTTTTCAA 59.105 37.500 12.54 0.00 39.38 2.69
3322 3716 4.984785 GGATGGTTCAAGAAGCTTTTCAAC 59.015 41.667 12.54 1.92 39.38 3.18
3323 3717 4.385358 TGGTTCAAGAAGCTTTTCAACC 57.615 40.909 17.70 17.70 39.38 3.77
3324 3718 3.766591 TGGTTCAAGAAGCTTTTCAACCA 59.233 39.130 21.05 21.05 39.55 3.67
3325 3719 4.405358 TGGTTCAAGAAGCTTTTCAACCAT 59.595 37.500 21.05 0.00 37.48 3.55
3326 3720 5.596361 TGGTTCAAGAAGCTTTTCAACCATA 59.404 36.000 21.05 7.59 37.48 2.74
3327 3721 5.920840 GGTTCAAGAAGCTTTTCAACCATAC 59.079 40.000 18.85 4.21 36.02 2.39
3328 3722 6.460953 GGTTCAAGAAGCTTTTCAACCATACA 60.461 38.462 18.85 0.00 36.02 2.29
3329 3723 6.899393 TCAAGAAGCTTTTCAACCATACAT 57.101 33.333 0.00 0.00 0.00 2.29
3330 3724 7.288810 TCAAGAAGCTTTTCAACCATACATT 57.711 32.000 0.00 0.00 0.00 2.71
3331 3725 7.725251 TCAAGAAGCTTTTCAACCATACATTT 58.275 30.769 0.00 0.00 0.00 2.32
3332 3726 7.652909 TCAAGAAGCTTTTCAACCATACATTTG 59.347 33.333 0.00 0.00 0.00 2.32
3333 3727 7.288810 AGAAGCTTTTCAACCATACATTTGA 57.711 32.000 0.00 0.00 0.00 2.69
3334 3728 7.899973 AGAAGCTTTTCAACCATACATTTGAT 58.100 30.769 0.00 0.00 31.87 2.57
3335 3729 7.816031 AGAAGCTTTTCAACCATACATTTGATG 59.184 33.333 0.00 0.00 31.87 3.07
3336 3730 5.870978 AGCTTTTCAACCATACATTTGATGC 59.129 36.000 0.00 0.00 31.87 3.91
3337 3731 5.063817 GCTTTTCAACCATACATTTGATGCC 59.936 40.000 0.00 0.00 31.87 4.40
3338 3732 5.735285 TTTCAACCATACATTTGATGCCA 57.265 34.783 0.00 0.00 31.87 4.92
3339 3733 4.987408 TCAACCATACATTTGATGCCAG 57.013 40.909 0.00 0.00 0.00 4.85
3340 3734 4.598022 TCAACCATACATTTGATGCCAGA 58.402 39.130 0.00 0.00 0.00 3.86
3341 3735 4.398988 TCAACCATACATTTGATGCCAGAC 59.601 41.667 0.00 0.00 0.00 3.51
3342 3736 3.966979 ACCATACATTTGATGCCAGACA 58.033 40.909 0.00 0.00 0.00 3.41
3343 3737 3.696051 ACCATACATTTGATGCCAGACAC 59.304 43.478 0.00 0.00 0.00 3.67
3344 3738 3.949754 CCATACATTTGATGCCAGACACT 59.050 43.478 0.00 0.00 0.00 3.55
3345 3739 4.036027 CCATACATTTGATGCCAGACACTC 59.964 45.833 0.00 0.00 0.00 3.51
3346 3740 2.440409 ACATTTGATGCCAGACACTCC 58.560 47.619 0.00 0.00 0.00 3.85
3347 3741 2.040813 ACATTTGATGCCAGACACTCCT 59.959 45.455 0.00 0.00 0.00 3.69
3348 3742 2.957402 TTTGATGCCAGACACTCCTT 57.043 45.000 0.00 0.00 0.00 3.36
3349 3743 2.957402 TTGATGCCAGACACTCCTTT 57.043 45.000 0.00 0.00 0.00 3.11
3350 3744 2.957402 TGATGCCAGACACTCCTTTT 57.043 45.000 0.00 0.00 0.00 2.27
3351 3745 2.507484 TGATGCCAGACACTCCTTTTG 58.493 47.619 0.00 0.00 0.00 2.44
3352 3746 1.200948 GATGCCAGACACTCCTTTTGC 59.799 52.381 0.00 0.00 0.00 3.68
3353 3747 0.823356 TGCCAGACACTCCTTTTGCC 60.823 55.000 0.00 0.00 0.00 4.52
3354 3748 1.527433 GCCAGACACTCCTTTTGCCC 61.527 60.000 0.00 0.00 0.00 5.36
3355 3749 0.111253 CCAGACACTCCTTTTGCCCT 59.889 55.000 0.00 0.00 0.00 5.19
3356 3750 1.242076 CAGACACTCCTTTTGCCCTG 58.758 55.000 0.00 0.00 0.00 4.45
3357 3751 0.111253 AGACACTCCTTTTGCCCTGG 59.889 55.000 0.00 0.00 0.00 4.45
3358 3752 1.527433 GACACTCCTTTTGCCCTGGC 61.527 60.000 0.00 0.00 42.35 4.85
3359 3753 2.118294 ACTCCTTTTGCCCTGGCC 59.882 61.111 5.57 0.00 41.09 5.36
3360 3754 2.681421 CTCCTTTTGCCCTGGCCC 60.681 66.667 5.57 0.00 41.09 5.80
3361 3755 3.516512 TCCTTTTGCCCTGGCCCA 61.517 61.111 5.57 0.00 41.09 5.36
3362 3756 2.999063 CCTTTTGCCCTGGCCCAG 60.999 66.667 2.91 2.91 41.09 4.45
3373 3767 4.603535 GGCCCAGGCAGTGGTGTT 62.604 66.667 11.50 0.00 46.37 3.32
3374 3768 3.297620 GCCCAGGCAGTGGTGTTG 61.298 66.667 3.12 0.00 46.37 3.33
3375 3769 2.598394 CCCAGGCAGTGGTGTTGG 60.598 66.667 3.80 0.00 46.37 3.77
3376 3770 3.297620 CCAGGCAGTGGTGTTGGC 61.298 66.667 0.00 0.00 42.17 4.52
3377 3771 3.297620 CAGGCAGTGGTGTTGGCC 61.298 66.667 0.00 0.00 46.77 5.36
3379 3773 4.912395 GGCAGTGGTGTTGGCCCA 62.912 66.667 0.00 0.00 40.55 5.36
3380 3774 2.601367 GCAGTGGTGTTGGCCCAT 60.601 61.111 0.00 0.00 33.76 4.00
3381 3775 1.304052 GCAGTGGTGTTGGCCCATA 60.304 57.895 0.00 0.00 33.76 2.74
3382 3776 1.595093 GCAGTGGTGTTGGCCCATAC 61.595 60.000 0.00 0.00 33.76 2.39
3383 3777 1.002624 AGTGGTGTTGGCCCATACG 60.003 57.895 0.00 0.00 33.76 3.06
3384 3778 1.302993 GTGGTGTTGGCCCATACGT 60.303 57.895 0.00 0.00 33.76 3.57
3385 3779 0.891904 GTGGTGTTGGCCCATACGTT 60.892 55.000 0.00 0.00 33.76 3.99
3386 3780 0.606944 TGGTGTTGGCCCATACGTTC 60.607 55.000 0.00 0.00 0.00 3.95
3387 3781 0.322187 GGTGTTGGCCCATACGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
3388 3782 1.084289 GTGTTGGCCCATACGTTCTC 58.916 55.000 0.00 0.00 0.00 2.87
3389 3783 0.981183 TGTTGGCCCATACGTTCTCT 59.019 50.000 0.00 0.00 0.00 3.10
3390 3784 2.093869 GTGTTGGCCCATACGTTCTCTA 60.094 50.000 0.00 0.00 0.00 2.43
3391 3785 2.167693 TGTTGGCCCATACGTTCTCTAG 59.832 50.000 0.00 0.00 0.00 2.43
3392 3786 2.429610 GTTGGCCCATACGTTCTCTAGA 59.570 50.000 0.00 0.00 0.00 2.43
3393 3787 2.029623 TGGCCCATACGTTCTCTAGAC 58.970 52.381 0.00 0.00 0.00 2.59
3394 3788 2.029623 GGCCCATACGTTCTCTAGACA 58.970 52.381 0.00 0.00 0.00 3.41
3395 3789 2.034812 GGCCCATACGTTCTCTAGACAG 59.965 54.545 0.00 0.00 0.00 3.51
3396 3790 2.950309 GCCCATACGTTCTCTAGACAGA 59.050 50.000 0.00 0.00 0.00 3.41
3397 3791 3.380637 GCCCATACGTTCTCTAGACAGAA 59.619 47.826 0.00 0.00 0.00 3.02
3398 3792 4.038162 GCCCATACGTTCTCTAGACAGAAT 59.962 45.833 0.00 0.00 34.86 2.40
3399 3793 5.452077 GCCCATACGTTCTCTAGACAGAATT 60.452 44.000 0.00 0.00 34.86 2.17
3400 3794 6.210078 CCCATACGTTCTCTAGACAGAATTC 58.790 44.000 0.00 0.00 34.86 2.17
3401 3795 6.039941 CCCATACGTTCTCTAGACAGAATTCT 59.960 42.308 0.88 0.88 34.86 2.40
3402 3796 7.416890 CCCATACGTTCTCTAGACAGAATTCTT 60.417 40.741 4.86 0.00 34.86 2.52
3403 3797 7.433719 CCATACGTTCTCTAGACAGAATTCTTG 59.566 40.741 4.86 4.38 34.86 3.02
3404 3798 5.164954 ACGTTCTCTAGACAGAATTCTTGC 58.835 41.667 4.86 0.48 34.86 4.01
3405 3799 5.164233 CGTTCTCTAGACAGAATTCTTGCA 58.836 41.667 4.86 0.00 34.86 4.08
3406 3800 5.061560 CGTTCTCTAGACAGAATTCTTGCAC 59.938 44.000 4.86 0.00 34.86 4.57
3407 3801 5.078411 TCTCTAGACAGAATTCTTGCACC 57.922 43.478 4.86 0.00 0.00 5.01
3408 3802 4.528206 TCTCTAGACAGAATTCTTGCACCA 59.472 41.667 4.86 0.00 0.00 4.17
3409 3803 5.188555 TCTCTAGACAGAATTCTTGCACCAT 59.811 40.000 4.86 0.00 0.00 3.55
3410 3804 5.423015 TCTAGACAGAATTCTTGCACCATC 58.577 41.667 4.86 0.00 0.00 3.51
3411 3805 4.025040 AGACAGAATTCTTGCACCATCA 57.975 40.909 4.86 0.00 0.00 3.07
3412 3806 4.401022 AGACAGAATTCTTGCACCATCAA 58.599 39.130 4.86 0.00 0.00 2.57
3413 3807 4.458295 AGACAGAATTCTTGCACCATCAAG 59.542 41.667 4.86 0.00 43.53 3.02
3414 3808 3.508793 ACAGAATTCTTGCACCATCAAGG 59.491 43.478 4.86 0.00 42.68 3.61
3415 3809 3.094572 AGAATTCTTGCACCATCAAGGG 58.905 45.455 0.88 0.00 42.68 3.95
3416 3810 1.188863 ATTCTTGCACCATCAAGGGC 58.811 50.000 4.00 0.00 42.68 5.19
3417 3811 0.178967 TTCTTGCACCATCAAGGGCA 60.179 50.000 4.00 0.00 42.68 5.36
3418 3812 0.040058 TCTTGCACCATCAAGGGCAT 59.960 50.000 4.00 0.00 42.68 4.40
3419 3813 0.458669 CTTGCACCATCAAGGGCATC 59.541 55.000 0.00 0.00 41.29 3.91
3420 3814 0.040058 TTGCACCATCAAGGGCATCT 59.960 50.000 0.00 0.00 41.29 2.90
3421 3815 0.040058 TGCACCATCAAGGGCATCTT 59.960 50.000 0.00 0.00 43.89 2.40
3422 3816 1.188863 GCACCATCAAGGGCATCTTT 58.811 50.000 0.00 0.00 43.89 2.52
3423 3817 1.551883 GCACCATCAAGGGCATCTTTT 59.448 47.619 0.00 0.00 43.89 2.27
3424 3818 2.760092 GCACCATCAAGGGCATCTTTTA 59.240 45.455 0.00 0.00 43.89 1.52
3425 3819 3.429410 GCACCATCAAGGGCATCTTTTAC 60.429 47.826 0.00 0.00 43.89 2.01
3426 3820 3.016736 ACCATCAAGGGCATCTTTTACG 58.983 45.455 0.00 0.00 43.89 3.18
3427 3821 2.223572 CCATCAAGGGCATCTTTTACGC 60.224 50.000 0.00 0.00 32.41 4.42
3428 3822 2.489938 TCAAGGGCATCTTTTACGCT 57.510 45.000 0.00 0.00 32.41 5.07
3429 3823 2.083774 TCAAGGGCATCTTTTACGCTG 58.916 47.619 0.00 0.00 32.41 5.18
3430 3824 0.811281 AAGGGCATCTTTTACGCTGC 59.189 50.000 0.00 0.00 29.99 5.25
3435 3829 3.971032 GCATCTTTTACGCTGCCTATT 57.029 42.857 0.00 0.00 0.00 1.73
3436 3830 3.621794 GCATCTTTTACGCTGCCTATTG 58.378 45.455 0.00 0.00 0.00 1.90
3437 3831 3.621794 CATCTTTTACGCTGCCTATTGC 58.378 45.455 0.00 0.00 41.77 3.56
3449 3843 2.564771 GCCTATTGCACAGCTATCACA 58.435 47.619 0.00 0.00 40.77 3.58
3450 3844 2.289002 GCCTATTGCACAGCTATCACAC 59.711 50.000 0.00 0.00 40.77 3.82
3451 3845 2.541346 CCTATTGCACAGCTATCACACG 59.459 50.000 0.00 0.00 0.00 4.49
3452 3846 1.372582 ATTGCACAGCTATCACACGG 58.627 50.000 0.00 0.00 0.00 4.94
3453 3847 0.034756 TTGCACAGCTATCACACGGT 59.965 50.000 0.00 0.00 0.00 4.83
3454 3848 0.892063 TGCACAGCTATCACACGGTA 59.108 50.000 0.00 0.00 0.00 4.02
3455 3849 1.278238 GCACAGCTATCACACGGTAC 58.722 55.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.764336 CATGCCGCCTTGCACACG 62.764 66.667 0.00 0.00 45.48 4.49
68 77 1.601477 CTGTGTGCACATGGAGCCA 60.601 57.895 24.69 13.87 41.01 4.75
89 98 7.466804 ACCTATATTTTGTCCTTTGTTCTCCA 58.533 34.615 0.00 0.00 0.00 3.86
90 99 7.067129 GGACCTATATTTTGTCCTTTGTTCTCC 59.933 40.741 9.55 0.00 44.17 3.71
145 154 7.469594 GCAACCATAATGATTCATGTGATGTCT 60.470 37.037 0.00 0.00 0.00 3.41
171 180 8.292448 AGTAGAAGCACAAACATCAACTATTTG 58.708 33.333 0.00 0.00 38.89 2.32
172 181 8.292448 CAGTAGAAGCACAAACATCAACTATTT 58.708 33.333 0.00 0.00 0.00 1.40
176 185 4.023707 GCAGTAGAAGCACAAACATCAACT 60.024 41.667 0.00 0.00 0.00 3.16
190 199 6.485984 TCGAACCCTAATACTAGCAGTAGAAG 59.514 42.308 0.00 0.00 33.66 2.85
193 202 5.996513 TCTCGAACCCTAATACTAGCAGTAG 59.003 44.000 0.00 0.00 33.66 2.57
195 204 4.789807 TCTCGAACCCTAATACTAGCAGT 58.210 43.478 0.00 0.00 0.00 4.40
196 205 5.968528 ATCTCGAACCCTAATACTAGCAG 57.031 43.478 0.00 0.00 0.00 4.24
245 254 8.606830 AGAAAGAAATAAGTCTACTTGACCCAT 58.393 33.333 5.62 0.00 46.46 4.00
289 299 3.265791 GAAGCACATCAAGGGACTACAG 58.734 50.000 0.00 0.00 38.49 2.74
291 301 3.334583 TGAAGCACATCAAGGGACTAC 57.665 47.619 0.00 0.00 38.49 2.73
365 377 7.168972 CGTAACCTTTTCTTGCATCAATCAAAA 59.831 33.333 0.00 0.00 0.00 2.44
482 502 3.403038 ACCTGCAGTCAAGATTGTGTAC 58.597 45.455 13.81 0.00 0.00 2.90
640 664 4.406326 TGCCATTTGATATGGTTGCTCATT 59.594 37.500 3.89 0.00 41.17 2.57
651 675 6.692849 TCATCTAGAGGTGCCATTTGATAT 57.307 37.500 4.02 0.00 0.00 1.63
716 740 7.449395 TCAGTTCAGAAGGACATGAATCATTTT 59.551 33.333 0.00 0.00 37.72 1.82
742 766 9.574516 TTTTAAAATCCTAGCAGAGACTTCTTT 57.425 29.630 0.00 0.00 0.00 2.52
827 851 6.069440 TCTCTCCCATTCATCCTTGTTATGTT 60.069 38.462 0.00 0.00 0.00 2.71
891 915 3.096852 CACCCCTTTTAAGTTCCCATCC 58.903 50.000 0.00 0.00 0.00 3.51
976 1000 4.021544 GGAGTCCTCTGGATATAAGCACAG 60.022 50.000 0.41 0.00 32.73 3.66
1101 1125 8.734386 GGCTGGATCATATTTCTATTAACAAGG 58.266 37.037 0.00 0.00 0.00 3.61
1148 1172 4.814771 GGACCCTACAATATTTCACCGAAG 59.185 45.833 0.00 0.00 0.00 3.79
1224 1248 2.858745 ACACGCCCATTTAAGACAGTT 58.141 42.857 0.00 0.00 0.00 3.16
1469 1505 0.524392 CCTCAGCTGACGCGAACTAG 60.524 60.000 15.93 6.20 42.32 2.57
1505 1541 7.277539 CACAAGGAAGCTCAGTAATCTTAGAAG 59.722 40.741 0.00 0.00 0.00 2.85
1617 1661 0.393808 ATAGGCGCACCAATTTCCGT 60.394 50.000 10.83 0.00 39.06 4.69
1647 1691 1.200716 CCTGCAGGCAATAGTGTGTTG 59.799 52.381 22.33 0.00 0.00 3.33
1655 1699 0.323360 GAACCCACCTGCAGGCAATA 60.323 55.000 33.06 0.00 39.32 1.90
1686 1742 1.810030 GCGTAACTCCTCCAAGGCG 60.810 63.158 0.00 0.00 34.61 5.52
1724 1780 6.534475 TTACTTCCTCCGCAAATCTTACTA 57.466 37.500 0.00 0.00 0.00 1.82
1728 1784 5.253330 TCATTTACTTCCTCCGCAAATCTT 58.747 37.500 0.00 0.00 0.00 2.40
1789 1848 1.032657 AGACGCGTGGCTGTCTCTAT 61.033 55.000 20.70 0.00 37.68 1.98
1790 1849 1.674651 AGACGCGTGGCTGTCTCTA 60.675 57.895 20.70 0.00 37.68 2.43
1802 1864 0.319211 TGGGTTACAGAACAGACGCG 60.319 55.000 3.53 3.53 37.29 6.01
1983 2055 5.423290 TCTTGTTATCTCAAGCTCCAGATGA 59.577 40.000 14.84 6.47 42.90 2.92
2034 2106 3.659786 CAGTTTGAATCCGTCACTACCA 58.340 45.455 0.00 0.00 35.39 3.25
2043 2115 4.003648 AGACCTTTAGCAGTTTGAATCCG 58.996 43.478 0.00 0.00 0.00 4.18
2090 2165 6.367695 CGGTGATTTCACTGTAACATGAGTAA 59.632 38.462 10.73 0.00 45.65 2.24
2210 2321 0.036952 CTCGACACCCAAGTCTGCAT 60.037 55.000 0.00 0.00 36.38 3.96
2243 2354 1.881903 TTGGACCTCGAGCTCTGCAG 61.882 60.000 12.85 7.63 0.00 4.41
2248 2359 2.386661 TTGATTTGGACCTCGAGCTC 57.613 50.000 6.99 2.73 0.00 4.09
2309 2420 4.590222 AGTTGGTTGCTTTCTCAATGGAAT 59.410 37.500 0.00 0.00 0.00 3.01
2348 2459 2.164422 CAGACTCTGCTGACACGGATTA 59.836 50.000 0.00 0.00 38.14 1.75
2369 2480 8.363390 TGTCATCCTTATACATCTGATCTTCAC 58.637 37.037 0.00 0.00 0.00 3.18
2379 2490 6.042093 TCCACTCCTTGTCATCCTTATACATC 59.958 42.308 0.00 0.00 0.00 3.06
2384 2495 3.456277 GGTCCACTCCTTGTCATCCTTAT 59.544 47.826 0.00 0.00 0.00 1.73
2404 2515 0.112412 AATTGCCCCTCGTTTCTGGT 59.888 50.000 0.00 0.00 0.00 4.00
2405 2516 1.256812 AAATTGCCCCTCGTTTCTGG 58.743 50.000 0.00 0.00 0.00 3.86
2406 2517 3.385193 AAAAATTGCCCCTCGTTTCTG 57.615 42.857 0.00 0.00 0.00 3.02
2416 2599 5.355910 TCGTAGGAGTGAATAAAAATTGCCC 59.644 40.000 0.00 0.00 0.00 5.36
2566 2921 1.188863 GGAACCAAATGCTGATGGCT 58.811 50.000 2.68 0.00 40.51 4.75
2657 3017 3.973206 TGGCGACAGATTTAGGAAGAA 57.027 42.857 0.00 0.00 35.01 2.52
2685 3048 0.749818 TCAAGCAACCCAGCAAACGA 60.750 50.000 0.00 0.00 36.85 3.85
2730 3094 4.282195 TCCCCAACAGCGAATTAAAAACAT 59.718 37.500 0.00 0.00 0.00 2.71
2760 3124 0.396435 CTCAGGGGTGCTACACAACA 59.604 55.000 0.00 0.00 37.92 3.33
2808 3173 9.767684 AATCGTACACAAACAACAACATATATG 57.232 29.630 11.29 11.29 0.00 1.78
2811 3176 9.601971 GTAAATCGTACACAAACAACAACATAT 57.398 29.630 0.00 0.00 0.00 1.78
2844 3209 4.512944 ACACAAGACACATAGCTCAGTTTG 59.487 41.667 0.00 0.00 0.00 2.93
2845 3210 4.512944 CACACAAGACACATAGCTCAGTTT 59.487 41.667 0.00 0.00 0.00 2.66
2858 3223 4.806640 TGCAGAGATATCACACAAGACA 57.193 40.909 5.32 0.00 0.00 3.41
2865 3230 5.533528 CCCAATCAAATGCAGAGATATCACA 59.466 40.000 5.32 0.00 0.00 3.58
2908 3302 4.877823 GTGACAATTACATGATGGCAGAGA 59.122 41.667 0.00 0.00 31.49 3.10
2909 3303 4.036027 GGTGACAATTACATGATGGCAGAG 59.964 45.833 0.00 0.00 31.49 3.35
2910 3304 3.947196 GGTGACAATTACATGATGGCAGA 59.053 43.478 0.00 0.00 31.49 4.26
2911 3305 3.949754 AGGTGACAATTACATGATGGCAG 59.050 43.478 0.00 0.00 31.49 4.85
2912 3306 3.695556 CAGGTGACAATTACATGATGGCA 59.304 43.478 0.00 0.00 31.98 4.92
2913 3307 3.489738 GCAGGTGACAATTACATGATGGC 60.490 47.826 0.00 0.00 31.98 4.40
2914 3308 3.242837 CGCAGGTGACAATTACATGATGG 60.243 47.826 0.00 0.00 31.98 3.51
2915 3309 3.622612 TCGCAGGTGACAATTACATGATG 59.377 43.478 0.00 0.00 31.98 3.07
2916 3310 3.623060 GTCGCAGGTGACAATTACATGAT 59.377 43.478 0.00 0.00 38.75 2.45
2917 3311 3.000041 GTCGCAGGTGACAATTACATGA 59.000 45.455 0.00 0.00 38.75 3.07
2918 3312 3.002791 AGTCGCAGGTGACAATTACATG 58.997 45.455 14.68 0.00 41.41 3.21
2919 3313 3.002791 CAGTCGCAGGTGACAATTACAT 58.997 45.455 14.68 0.00 41.41 2.29
2920 3314 2.036604 TCAGTCGCAGGTGACAATTACA 59.963 45.455 14.68 0.00 41.41 2.41
2921 3315 2.412089 GTCAGTCGCAGGTGACAATTAC 59.588 50.000 14.68 4.15 40.19 1.89
2922 3316 2.611971 GGTCAGTCGCAGGTGACAATTA 60.612 50.000 14.68 0.00 41.54 1.40
2923 3317 1.512926 GTCAGTCGCAGGTGACAATT 58.487 50.000 14.68 0.00 40.19 2.32
2924 3318 0.320771 GGTCAGTCGCAGGTGACAAT 60.321 55.000 14.68 0.00 41.54 2.71
2925 3319 1.069090 GGTCAGTCGCAGGTGACAA 59.931 57.895 14.68 0.58 41.54 3.18
2926 3320 2.734591 GGTCAGTCGCAGGTGACA 59.265 61.111 14.68 0.00 41.54 3.58
2927 3321 2.430921 CGGTCAGTCGCAGGTGAC 60.431 66.667 4.86 4.86 39.88 3.67
2928 3322 2.596338 TCGGTCAGTCGCAGGTGA 60.596 61.111 0.00 0.00 0.00 4.02
2929 3323 1.583495 TAGTCGGTCAGTCGCAGGTG 61.583 60.000 0.00 0.00 0.00 4.00
2930 3324 1.303074 TAGTCGGTCAGTCGCAGGT 60.303 57.895 0.00 0.00 0.00 4.00
2931 3325 1.025113 TCTAGTCGGTCAGTCGCAGG 61.025 60.000 0.00 0.00 0.00 4.85
2932 3326 1.003331 GATCTAGTCGGTCAGTCGCAG 60.003 57.143 0.00 0.00 0.00 5.18
2933 3327 1.015109 GATCTAGTCGGTCAGTCGCA 58.985 55.000 0.00 0.00 0.00 5.10
2934 3328 0.042013 CGATCTAGTCGGTCAGTCGC 60.042 60.000 6.78 0.00 46.47 5.19
2944 3338 1.335496 GAGCTCACCACCGATCTAGTC 59.665 57.143 9.40 0.00 0.00 2.59
2945 3339 1.394618 GAGCTCACCACCGATCTAGT 58.605 55.000 9.40 0.00 0.00 2.57
2946 3340 0.309302 CGAGCTCACCACCGATCTAG 59.691 60.000 15.40 0.00 0.00 2.43
2947 3341 1.725557 GCGAGCTCACCACCGATCTA 61.726 60.000 15.40 0.00 0.00 1.98
2948 3342 3.069980 GCGAGCTCACCACCGATCT 62.070 63.158 15.40 0.00 0.00 2.75
2949 3343 2.583593 GCGAGCTCACCACCGATC 60.584 66.667 15.40 0.00 0.00 3.69
2950 3344 4.148825 GGCGAGCTCACCACCGAT 62.149 66.667 16.08 0.00 0.00 4.18
3080 3474 4.222810 TCCTGAACTCTCGATCATTTGGAA 59.777 41.667 0.00 0.00 0.00 3.53
3081 3475 3.769300 TCCTGAACTCTCGATCATTTGGA 59.231 43.478 0.00 0.00 0.00 3.53
3082 3476 3.868077 GTCCTGAACTCTCGATCATTTGG 59.132 47.826 0.00 0.00 0.00 3.28
3083 3477 3.549471 CGTCCTGAACTCTCGATCATTTG 59.451 47.826 0.00 0.00 0.00 2.32
3084 3478 3.775202 CGTCCTGAACTCTCGATCATTT 58.225 45.455 0.00 0.00 0.00 2.32
3085 3479 2.480416 GCGTCCTGAACTCTCGATCATT 60.480 50.000 0.00 0.00 0.00 2.57
3086 3480 1.066303 GCGTCCTGAACTCTCGATCAT 59.934 52.381 0.00 0.00 0.00 2.45
3087 3481 0.452184 GCGTCCTGAACTCTCGATCA 59.548 55.000 0.00 0.00 0.00 2.92
3088 3482 0.452184 TGCGTCCTGAACTCTCGATC 59.548 55.000 0.00 0.00 0.00 3.69
3089 3483 0.171455 GTGCGTCCTGAACTCTCGAT 59.829 55.000 0.00 0.00 0.00 3.59
3090 3484 1.579932 GTGCGTCCTGAACTCTCGA 59.420 57.895 0.00 0.00 0.00 4.04
3091 3485 1.797933 CGTGCGTCCTGAACTCTCG 60.798 63.158 0.00 0.00 0.00 4.04
3092 3486 0.729816 GTCGTGCGTCCTGAACTCTC 60.730 60.000 0.00 0.00 0.00 3.20
3093 3487 1.173444 AGTCGTGCGTCCTGAACTCT 61.173 55.000 0.00 0.00 0.00 3.24
3094 3488 0.318784 AAGTCGTGCGTCCTGAACTC 60.319 55.000 0.00 0.00 0.00 3.01
3095 3489 0.597637 CAAGTCGTGCGTCCTGAACT 60.598 55.000 0.00 0.00 0.00 3.01
3096 3490 0.874607 ACAAGTCGTGCGTCCTGAAC 60.875 55.000 0.00 0.00 0.00 3.18
3097 3491 0.669619 TACAAGTCGTGCGTCCTGAA 59.330 50.000 0.00 0.00 0.00 3.02
3098 3492 0.669619 TTACAAGTCGTGCGTCCTGA 59.330 50.000 0.00 0.00 0.00 3.86
3099 3493 1.710013 ATTACAAGTCGTGCGTCCTG 58.290 50.000 0.00 0.00 0.00 3.86
3100 3494 2.450609 AATTACAAGTCGTGCGTCCT 57.549 45.000 0.00 0.00 0.00 3.85
3101 3495 3.223157 CAAAATTACAAGTCGTGCGTCC 58.777 45.455 0.00 0.00 0.00 4.79
3102 3496 3.059461 TCCAAAATTACAAGTCGTGCGTC 60.059 43.478 0.00 0.00 0.00 5.19
3103 3497 2.873472 TCCAAAATTACAAGTCGTGCGT 59.127 40.909 0.00 0.00 0.00 5.24
3104 3498 3.529634 TCCAAAATTACAAGTCGTGCG 57.470 42.857 0.00 0.00 0.00 5.34
3105 3499 3.668656 GCTTCCAAAATTACAAGTCGTGC 59.331 43.478 0.00 0.00 0.00 5.34
3106 3500 3.906008 CGCTTCCAAAATTACAAGTCGTG 59.094 43.478 0.00 0.00 0.00 4.35
3107 3501 3.810941 TCGCTTCCAAAATTACAAGTCGT 59.189 39.130 0.00 0.00 0.00 4.34
3108 3502 4.398549 TCGCTTCCAAAATTACAAGTCG 57.601 40.909 0.00 0.00 0.00 4.18
3109 3503 6.092807 AGAGATCGCTTCCAAAATTACAAGTC 59.907 38.462 0.00 0.00 0.00 3.01
3110 3504 5.940470 AGAGATCGCTTCCAAAATTACAAGT 59.060 36.000 0.00 0.00 0.00 3.16
3111 3505 6.314896 AGAGAGATCGCTTCCAAAATTACAAG 59.685 38.462 0.00 0.00 0.00 3.16
3112 3506 6.173339 AGAGAGATCGCTTCCAAAATTACAA 58.827 36.000 0.00 0.00 0.00 2.41
3113 3507 5.734720 AGAGAGATCGCTTCCAAAATTACA 58.265 37.500 0.00 0.00 0.00 2.41
3114 3508 7.203910 TCTAGAGAGATCGCTTCCAAAATTAC 58.796 38.462 0.00 0.00 0.00 1.89
3115 3509 7.068839 ACTCTAGAGAGATCGCTTCCAAAATTA 59.931 37.037 26.57 0.00 44.74 1.40
3116 3510 6.127196 ACTCTAGAGAGATCGCTTCCAAAATT 60.127 38.462 26.57 0.00 44.74 1.82
3117 3511 5.362430 ACTCTAGAGAGATCGCTTCCAAAAT 59.638 40.000 26.57 0.00 44.74 1.82
3118 3512 4.707448 ACTCTAGAGAGATCGCTTCCAAAA 59.293 41.667 26.57 0.00 44.74 2.44
3119 3513 4.274147 ACTCTAGAGAGATCGCTTCCAAA 58.726 43.478 26.57 0.00 44.74 3.28
3120 3514 3.880490 GACTCTAGAGAGATCGCTTCCAA 59.120 47.826 26.57 0.00 44.74 3.53
3121 3515 3.118223 TGACTCTAGAGAGATCGCTTCCA 60.118 47.826 26.57 5.25 44.74 3.53
3122 3516 3.472652 TGACTCTAGAGAGATCGCTTCC 58.527 50.000 26.57 3.00 44.74 3.46
3123 3517 5.493133 TTTGACTCTAGAGAGATCGCTTC 57.507 43.478 26.57 10.84 44.74 3.86
3124 3518 4.202010 GCTTTGACTCTAGAGAGATCGCTT 60.202 45.833 26.57 0.38 44.74 4.68
3125 3519 3.315191 GCTTTGACTCTAGAGAGATCGCT 59.685 47.826 26.57 0.00 44.74 4.93
3126 3520 3.315191 AGCTTTGACTCTAGAGAGATCGC 59.685 47.826 26.57 19.72 44.74 4.58
3127 3521 5.499139 AAGCTTTGACTCTAGAGAGATCG 57.501 43.478 26.57 11.77 44.74 3.69
3128 3522 5.505654 CGGAAGCTTTGACTCTAGAGAGATC 60.506 48.000 26.57 13.68 44.74 2.75
3129 3523 4.338118 CGGAAGCTTTGACTCTAGAGAGAT 59.662 45.833 26.57 8.90 44.74 2.75
3130 3524 3.692101 CGGAAGCTTTGACTCTAGAGAGA 59.308 47.826 26.57 8.95 44.74 3.10
3131 3525 6.743837 GCCGGAAGCTTTGACTCTAGAGAG 62.744 54.167 26.57 13.66 42.53 3.20
3132 3526 2.755655 CCGGAAGCTTTGACTCTAGAGA 59.244 50.000 26.57 1.40 0.00 3.10
3133 3527 2.737039 GCCGGAAGCTTTGACTCTAGAG 60.737 54.545 18.49 18.49 38.99 2.43
3134 3528 1.204941 GCCGGAAGCTTTGACTCTAGA 59.795 52.381 5.05 0.00 38.99 2.43
3135 3529 1.066858 TGCCGGAAGCTTTGACTCTAG 60.067 52.381 5.05 0.00 44.23 2.43
3136 3530 0.973632 TGCCGGAAGCTTTGACTCTA 59.026 50.000 5.05 0.00 44.23 2.43
3137 3531 0.326264 ATGCCGGAAGCTTTGACTCT 59.674 50.000 5.05 0.00 44.23 3.24
3138 3532 0.449388 CATGCCGGAAGCTTTGACTC 59.551 55.000 5.05 0.00 44.23 3.36
3139 3533 0.250901 ACATGCCGGAAGCTTTGACT 60.251 50.000 5.05 0.00 44.23 3.41
3140 3534 0.169009 GACATGCCGGAAGCTTTGAC 59.831 55.000 5.05 0.00 44.23 3.18
3141 3535 1.298157 CGACATGCCGGAAGCTTTGA 61.298 55.000 5.05 0.00 44.23 2.69
3142 3536 1.135315 CGACATGCCGGAAGCTTTG 59.865 57.895 5.05 0.00 44.23 2.77
3143 3537 0.392998 ATCGACATGCCGGAAGCTTT 60.393 50.000 5.05 0.00 44.23 3.51
3144 3538 0.811616 GATCGACATGCCGGAAGCTT 60.812 55.000 5.05 0.00 44.23 3.74
3145 3539 1.227380 GATCGACATGCCGGAAGCT 60.227 57.895 5.05 0.00 44.23 3.74
3146 3540 2.247437 GGATCGACATGCCGGAAGC 61.247 63.158 5.05 0.00 44.14 3.86
3147 3541 0.877649 CTGGATCGACATGCCGGAAG 60.878 60.000 5.05 0.00 0.00 3.46
3148 3542 1.143838 CTGGATCGACATGCCGGAA 59.856 57.895 5.05 0.00 0.00 4.30
3149 3543 2.016393 GACTGGATCGACATGCCGGA 62.016 60.000 5.05 0.00 0.00 5.14
3150 3544 1.592669 GACTGGATCGACATGCCGG 60.593 63.158 0.36 0.00 0.00 6.13
3151 3545 4.018609 GACTGGATCGACATGCCG 57.981 61.111 0.00 0.00 0.00 5.69
3160 3554 0.608640 ACCAACCTGACGACTGGATC 59.391 55.000 16.86 0.00 38.29 3.36
3161 3555 0.608640 GACCAACCTGACGACTGGAT 59.391 55.000 16.86 2.83 38.29 3.41
3162 3556 1.469335 GGACCAACCTGACGACTGGA 61.469 60.000 16.86 0.00 38.29 3.86
3163 3557 1.004918 GGACCAACCTGACGACTGG 60.005 63.158 9.11 9.11 40.30 4.00
3164 3558 1.004918 GGGACCAACCTGACGACTG 60.005 63.158 0.00 0.00 38.98 3.51
3165 3559 0.763223 AAGGGACCAACCTGACGACT 60.763 55.000 0.00 0.00 40.87 4.18
3166 3560 0.602905 CAAGGGACCAACCTGACGAC 60.603 60.000 0.00 0.00 40.87 4.34
3167 3561 1.752198 CAAGGGACCAACCTGACGA 59.248 57.895 0.00 0.00 40.87 4.20
3168 3562 1.966451 GCAAGGGACCAACCTGACG 60.966 63.158 0.00 0.00 40.87 4.35
3169 3563 0.690762 TAGCAAGGGACCAACCTGAC 59.309 55.000 0.00 0.00 40.87 3.51
3170 3564 0.690762 GTAGCAAGGGACCAACCTGA 59.309 55.000 0.00 0.00 40.87 3.86
3171 3565 0.693049 AGTAGCAAGGGACCAACCTG 59.307 55.000 0.00 0.00 40.87 4.00
3172 3566 0.984995 GAGTAGCAAGGGACCAACCT 59.015 55.000 0.00 0.00 44.56 3.50
3173 3567 0.984995 AGAGTAGCAAGGGACCAACC 59.015 55.000 0.00 0.00 38.08 3.77
3174 3568 1.946283 GCAGAGTAGCAAGGGACCAAC 60.946 57.143 0.00 0.00 0.00 3.77
3175 3569 0.324943 GCAGAGTAGCAAGGGACCAA 59.675 55.000 0.00 0.00 0.00 3.67
3176 3570 0.545309 AGCAGAGTAGCAAGGGACCA 60.545 55.000 0.00 0.00 36.85 4.02
3177 3571 0.176910 GAGCAGAGTAGCAAGGGACC 59.823 60.000 0.00 0.00 36.85 4.46
3178 3572 0.179124 CGAGCAGAGTAGCAAGGGAC 60.179 60.000 0.00 0.00 36.85 4.46
3179 3573 0.612174 ACGAGCAGAGTAGCAAGGGA 60.612 55.000 0.00 0.00 36.85 4.20
3180 3574 1.103803 TACGAGCAGAGTAGCAAGGG 58.896 55.000 0.00 0.00 36.85 3.95
3181 3575 2.164624 ACTTACGAGCAGAGTAGCAAGG 59.835 50.000 0.00 0.00 36.85 3.61
3182 3576 3.175152 CACTTACGAGCAGAGTAGCAAG 58.825 50.000 0.00 0.00 36.85 4.01
3183 3577 2.557056 ACACTTACGAGCAGAGTAGCAA 59.443 45.455 0.00 0.00 36.85 3.91
3184 3578 2.160205 ACACTTACGAGCAGAGTAGCA 58.840 47.619 0.00 0.00 36.85 3.49
3185 3579 2.917971 CAACACTTACGAGCAGAGTAGC 59.082 50.000 0.00 0.00 0.00 3.58
3186 3580 3.190744 TCCAACACTTACGAGCAGAGTAG 59.809 47.826 0.00 0.00 0.00 2.57
3187 3581 3.151554 TCCAACACTTACGAGCAGAGTA 58.848 45.455 0.00 0.00 0.00 2.59
3188 3582 1.961394 TCCAACACTTACGAGCAGAGT 59.039 47.619 0.00 0.00 0.00 3.24
3189 3583 2.724977 TCCAACACTTACGAGCAGAG 57.275 50.000 0.00 0.00 0.00 3.35
3190 3584 3.678056 ATTCCAACACTTACGAGCAGA 57.322 42.857 0.00 0.00 0.00 4.26
3191 3585 3.125316 GGAATTCCAACACTTACGAGCAG 59.875 47.826 20.04 0.00 35.64 4.24
3192 3586 3.071479 GGAATTCCAACACTTACGAGCA 58.929 45.455 20.04 0.00 35.64 4.26
3193 3587 3.071479 TGGAATTCCAACACTTACGAGC 58.929 45.455 25.13 0.00 44.35 5.03
3205 3599 2.616376 CAATTATCGCGGTGGAATTCCA 59.384 45.455 23.63 23.63 45.30 3.53
3206 3600 2.875933 TCAATTATCGCGGTGGAATTCC 59.124 45.455 18.17 18.17 0.00 3.01
3207 3601 4.035208 ACTTCAATTATCGCGGTGGAATTC 59.965 41.667 6.13 0.00 0.00 2.17
3208 3602 3.945285 ACTTCAATTATCGCGGTGGAATT 59.055 39.130 6.13 0.00 0.00 2.17
3209 3603 3.541632 ACTTCAATTATCGCGGTGGAAT 58.458 40.909 6.13 0.00 0.00 3.01
3210 3604 2.980568 ACTTCAATTATCGCGGTGGAA 58.019 42.857 6.13 1.76 0.00 3.53
3211 3605 2.684001 ACTTCAATTATCGCGGTGGA 57.316 45.000 6.13 0.00 0.00 4.02
3212 3606 3.303132 GCTTACTTCAATTATCGCGGTGG 60.303 47.826 6.13 0.00 0.00 4.61
3213 3607 3.308595 TGCTTACTTCAATTATCGCGGTG 59.691 43.478 6.13 0.00 0.00 4.94
3214 3608 3.308866 GTGCTTACTTCAATTATCGCGGT 59.691 43.478 6.13 0.00 0.00 5.68
3215 3609 3.601586 CGTGCTTACTTCAATTATCGCGG 60.602 47.826 6.13 0.00 0.00 6.46
3216 3610 3.522362 CGTGCTTACTTCAATTATCGCG 58.478 45.455 0.00 0.00 0.00 5.87
3217 3611 3.844943 GCCGTGCTTACTTCAATTATCGC 60.845 47.826 0.00 0.00 0.00 4.58
3218 3612 3.555956 AGCCGTGCTTACTTCAATTATCG 59.444 43.478 0.00 0.00 33.89 2.92
3235 3629 4.008933 GTCCCAGTGCAGAGCCGT 62.009 66.667 0.00 0.00 0.00 5.68
3265 3659 0.742281 CGGCAGATCAGTGGACAAGG 60.742 60.000 0.00 0.00 0.00 3.61
3295 3689 2.787994 AGCTTCTTGAACCATCCTGTG 58.212 47.619 0.00 0.00 0.00 3.66
3296 3690 3.515602 AAGCTTCTTGAACCATCCTGT 57.484 42.857 0.00 0.00 0.00 4.00
3297 3691 4.279169 TGAAAAGCTTCTTGAACCATCCTG 59.721 41.667 0.00 0.00 32.33 3.86
3298 3692 4.473444 TGAAAAGCTTCTTGAACCATCCT 58.527 39.130 0.00 0.00 32.33 3.24
3299 3693 4.853924 TGAAAAGCTTCTTGAACCATCC 57.146 40.909 0.00 0.00 32.33 3.51
3300 3694 4.984785 GGTTGAAAAGCTTCTTGAACCATC 59.015 41.667 23.92 8.78 42.05 3.51
3301 3695 4.405358 TGGTTGAAAAGCTTCTTGAACCAT 59.595 37.500 25.85 0.00 46.34 3.55
3302 3696 3.766591 TGGTTGAAAAGCTTCTTGAACCA 59.233 39.130 25.85 25.85 46.34 3.67
3303 3697 4.385358 TGGTTGAAAAGCTTCTTGAACC 57.615 40.909 22.98 22.98 46.34 3.62
3304 3698 6.503524 TGTATGGTTGAAAAGCTTCTTGAAC 58.496 36.000 0.00 7.22 46.34 3.18
3305 3699 6.707440 TGTATGGTTGAAAAGCTTCTTGAA 57.293 33.333 0.00 0.00 46.34 2.69
3306 3700 6.899393 ATGTATGGTTGAAAAGCTTCTTGA 57.101 33.333 0.00 0.00 46.34 3.02
3307 3701 7.652909 TCAAATGTATGGTTGAAAAGCTTCTTG 59.347 33.333 0.00 0.00 46.34 3.02
3308 3702 7.725251 TCAAATGTATGGTTGAAAAGCTTCTT 58.275 30.769 0.00 0.00 46.34 2.52
3309 3703 7.288810 TCAAATGTATGGTTGAAAAGCTTCT 57.711 32.000 0.00 0.00 46.34 2.85
3310 3704 7.412237 GCATCAAATGTATGGTTGAAAAGCTTC 60.412 37.037 0.00 0.00 46.34 3.86
3311 3705 6.369615 GCATCAAATGTATGGTTGAAAAGCTT 59.630 34.615 0.00 0.00 46.34 3.74
3312 3706 5.870978 GCATCAAATGTATGGTTGAAAAGCT 59.129 36.000 0.00 0.00 46.34 3.74
3313 3707 5.063817 GGCATCAAATGTATGGTTGAAAAGC 59.936 40.000 0.00 0.00 46.39 3.51
3314 3708 6.164876 TGGCATCAAATGTATGGTTGAAAAG 58.835 36.000 0.00 0.00 37.31 2.27
3315 3709 6.014755 TCTGGCATCAAATGTATGGTTGAAAA 60.015 34.615 0.00 0.00 37.31 2.29
3316 3710 5.479724 TCTGGCATCAAATGTATGGTTGAAA 59.520 36.000 0.00 0.00 37.31 2.69
3317 3711 5.015515 TCTGGCATCAAATGTATGGTTGAA 58.984 37.500 0.00 0.00 37.31 2.69
3318 3712 4.398988 GTCTGGCATCAAATGTATGGTTGA 59.601 41.667 0.00 0.00 38.09 3.18
3319 3713 4.158209 TGTCTGGCATCAAATGTATGGTTG 59.842 41.667 0.00 0.00 0.00 3.77
3320 3714 4.158394 GTGTCTGGCATCAAATGTATGGTT 59.842 41.667 0.00 0.00 0.00 3.67
3321 3715 3.696051 GTGTCTGGCATCAAATGTATGGT 59.304 43.478 0.00 0.00 0.00 3.55
3322 3716 3.949754 AGTGTCTGGCATCAAATGTATGG 59.050 43.478 0.00 0.00 0.00 2.74
3323 3717 4.036027 GGAGTGTCTGGCATCAAATGTATG 59.964 45.833 0.00 0.00 0.00 2.39
3324 3718 4.080129 AGGAGTGTCTGGCATCAAATGTAT 60.080 41.667 0.00 0.00 0.00 2.29
3325 3719 3.264193 AGGAGTGTCTGGCATCAAATGTA 59.736 43.478 0.00 0.00 0.00 2.29
3326 3720 2.040813 AGGAGTGTCTGGCATCAAATGT 59.959 45.455 0.00 0.00 0.00 2.71
3327 3721 2.719739 AGGAGTGTCTGGCATCAAATG 58.280 47.619 0.00 0.00 0.00 2.32
3328 3722 3.446442 AAGGAGTGTCTGGCATCAAAT 57.554 42.857 0.00 0.00 0.00 2.32
3329 3723 2.957402 AAGGAGTGTCTGGCATCAAA 57.043 45.000 0.00 0.00 0.00 2.69
3330 3724 2.886523 CAAAAGGAGTGTCTGGCATCAA 59.113 45.455 0.00 0.00 0.00 2.57
3331 3725 2.507484 CAAAAGGAGTGTCTGGCATCA 58.493 47.619 0.00 0.00 0.00 3.07
3332 3726 1.200948 GCAAAAGGAGTGTCTGGCATC 59.799 52.381 0.00 0.00 0.00 3.91
3333 3727 1.251251 GCAAAAGGAGTGTCTGGCAT 58.749 50.000 0.00 0.00 0.00 4.40
3334 3728 0.823356 GGCAAAAGGAGTGTCTGGCA 60.823 55.000 0.00 0.00 33.12 4.92
3335 3729 1.527433 GGGCAAAAGGAGTGTCTGGC 61.527 60.000 0.00 0.00 0.00 4.85
3336 3730 0.111253 AGGGCAAAAGGAGTGTCTGG 59.889 55.000 0.00 0.00 0.00 3.86
3337 3731 1.242076 CAGGGCAAAAGGAGTGTCTG 58.758 55.000 0.00 0.00 0.00 3.51
3338 3732 0.111253 CCAGGGCAAAAGGAGTGTCT 59.889 55.000 0.00 0.00 0.00 3.41
3339 3733 1.527433 GCCAGGGCAAAAGGAGTGTC 61.527 60.000 5.20 0.00 41.49 3.67
3340 3734 1.531602 GCCAGGGCAAAAGGAGTGT 60.532 57.895 5.20 0.00 41.49 3.55
3341 3735 2.278330 GGCCAGGGCAAAAGGAGTG 61.278 63.158 13.10 0.00 44.11 3.51
3342 3736 2.118294 GGCCAGGGCAAAAGGAGT 59.882 61.111 13.10 0.00 44.11 3.85
3343 3737 2.681421 GGGCCAGGGCAAAAGGAG 60.681 66.667 16.36 0.00 44.11 3.69
3344 3738 3.516512 TGGGCCAGGGCAAAAGGA 61.517 61.111 16.36 0.00 44.11 3.36
3345 3739 2.999063 CTGGGCCAGGGCAAAAGG 60.999 66.667 26.34 0.00 44.11 3.11
3356 3750 4.603535 AACACCACTGCCTGGGCC 62.604 66.667 9.28 0.00 45.78 5.80
3357 3751 3.297620 CAACACCACTGCCTGGGC 61.298 66.667 4.43 4.43 45.78 5.36
3358 3752 2.598394 CCAACACCACTGCCTGGG 60.598 66.667 0.00 0.00 45.78 4.45
3360 3754 3.297620 GGCCAACACCACTGCCTG 61.298 66.667 0.00 0.00 40.77 4.85
3361 3755 4.603535 GGGCCAACACCACTGCCT 62.604 66.667 4.39 0.00 43.50 4.75
3362 3756 2.779742 TATGGGCCAACACCACTGCC 62.780 60.000 11.89 0.00 41.58 4.85
3363 3757 1.304052 TATGGGCCAACACCACTGC 60.304 57.895 11.89 0.00 41.58 4.40
3364 3758 1.305219 CGTATGGGCCAACACCACTG 61.305 60.000 11.89 0.00 41.58 3.66
3365 3759 1.002624 CGTATGGGCCAACACCACT 60.003 57.895 11.89 0.00 41.58 4.00
3366 3760 0.891904 AACGTATGGGCCAACACCAC 60.892 55.000 11.89 2.84 41.58 4.16
3367 3761 0.606944 GAACGTATGGGCCAACACCA 60.607 55.000 11.89 0.00 43.22 4.17
3368 3762 0.322187 AGAACGTATGGGCCAACACC 60.322 55.000 11.89 0.00 0.00 4.16
3369 3763 1.084289 GAGAACGTATGGGCCAACAC 58.916 55.000 11.89 11.16 0.00 3.32
3370 3764 0.981183 AGAGAACGTATGGGCCAACA 59.019 50.000 11.89 0.00 0.00 3.33
3371 3765 2.429610 TCTAGAGAACGTATGGGCCAAC 59.570 50.000 11.89 9.57 0.00 3.77
3372 3766 2.429610 GTCTAGAGAACGTATGGGCCAA 59.570 50.000 11.89 0.00 0.00 4.52
3373 3767 2.029623 GTCTAGAGAACGTATGGGCCA 58.970 52.381 9.61 9.61 0.00 5.36
3374 3768 2.029623 TGTCTAGAGAACGTATGGGCC 58.970 52.381 0.00 0.00 0.00 5.80
3375 3769 2.950309 TCTGTCTAGAGAACGTATGGGC 59.050 50.000 0.00 0.00 0.00 5.36
3376 3770 5.776173 ATTCTGTCTAGAGAACGTATGGG 57.224 43.478 0.00 0.00 34.79 4.00
3377 3771 7.033530 AGAATTCTGTCTAGAGAACGTATGG 57.966 40.000 7.30 0.00 34.79 2.74
3378 3772 7.043722 GCAAGAATTCTGTCTAGAGAACGTATG 60.044 40.741 9.17 0.00 34.79 2.39
3379 3773 6.975772 GCAAGAATTCTGTCTAGAGAACGTAT 59.024 38.462 9.17 0.00 34.79 3.06
3380 3774 6.072119 TGCAAGAATTCTGTCTAGAGAACGTA 60.072 38.462 9.17 0.00 34.79 3.57
3381 3775 5.164954 GCAAGAATTCTGTCTAGAGAACGT 58.835 41.667 9.17 0.00 34.79 3.99
3382 3776 5.061560 GTGCAAGAATTCTGTCTAGAGAACG 59.938 44.000 9.17 0.00 34.79 3.95
3383 3777 5.350091 GGTGCAAGAATTCTGTCTAGAGAAC 59.650 44.000 9.17 0.00 34.79 3.01
3384 3778 5.012046 TGGTGCAAGAATTCTGTCTAGAGAA 59.988 40.000 9.17 0.00 36.41 2.87
3385 3779 4.528206 TGGTGCAAGAATTCTGTCTAGAGA 59.472 41.667 9.17 0.00 33.70 3.10
3386 3780 4.825422 TGGTGCAAGAATTCTGTCTAGAG 58.175 43.478 9.17 0.00 33.70 2.43
3387 3781 4.890158 TGGTGCAAGAATTCTGTCTAGA 57.110 40.909 9.17 0.00 0.00 2.43
3388 3782 5.181009 TGATGGTGCAAGAATTCTGTCTAG 58.819 41.667 9.17 0.00 0.00 2.43
3389 3783 5.164620 TGATGGTGCAAGAATTCTGTCTA 57.835 39.130 9.17 0.00 0.00 2.59
3390 3784 4.025040 TGATGGTGCAAGAATTCTGTCT 57.975 40.909 9.17 0.00 0.00 3.41
3391 3785 4.380233 CCTTGATGGTGCAAGAATTCTGTC 60.380 45.833 9.17 4.55 46.31 3.51
3392 3786 3.508793 CCTTGATGGTGCAAGAATTCTGT 59.491 43.478 9.17 0.00 46.31 3.41
3393 3787 3.119245 CCCTTGATGGTGCAAGAATTCTG 60.119 47.826 9.17 4.72 46.31 3.02
3394 3788 3.094572 CCCTTGATGGTGCAAGAATTCT 58.905 45.455 0.88 0.88 46.31 2.40
3395 3789 2.417787 GCCCTTGATGGTGCAAGAATTC 60.418 50.000 5.74 0.00 46.31 2.17
3396 3790 1.551883 GCCCTTGATGGTGCAAGAATT 59.448 47.619 5.74 0.00 46.31 2.17
3397 3791 1.188863 GCCCTTGATGGTGCAAGAAT 58.811 50.000 5.74 0.00 46.31 2.40
3398 3792 0.178967 TGCCCTTGATGGTGCAAGAA 60.179 50.000 5.74 0.00 46.31 2.52
3399 3793 0.040058 ATGCCCTTGATGGTGCAAGA 59.960 50.000 5.74 0.00 46.31 3.02
3400 3794 0.458669 GATGCCCTTGATGGTGCAAG 59.541 55.000 0.00 0.00 42.38 4.01
3401 3795 0.040058 AGATGCCCTTGATGGTGCAA 59.960 50.000 0.00 0.00 42.38 4.08
3402 3796 0.040058 AAGATGCCCTTGATGGTGCA 59.960 50.000 3.72 3.72 42.94 4.57
3403 3797 1.188863 AAAGATGCCCTTGATGGTGC 58.811 50.000 0.00 0.00 34.79 5.01
3404 3798 3.181497 CGTAAAAGATGCCCTTGATGGTG 60.181 47.826 0.00 0.00 34.79 4.17
3405 3799 3.016736 CGTAAAAGATGCCCTTGATGGT 58.983 45.455 0.00 0.00 34.79 3.55
3406 3800 2.223572 GCGTAAAAGATGCCCTTGATGG 60.224 50.000 0.00 0.00 34.79 3.51
3407 3801 2.684881 AGCGTAAAAGATGCCCTTGATG 59.315 45.455 0.00 0.00 41.44 3.07
3408 3802 2.684881 CAGCGTAAAAGATGCCCTTGAT 59.315 45.455 0.00 0.00 41.44 2.57
3409 3803 2.083774 CAGCGTAAAAGATGCCCTTGA 58.916 47.619 0.00 0.00 41.44 3.02
3410 3804 1.468054 GCAGCGTAAAAGATGCCCTTG 60.468 52.381 0.00 0.00 46.63 3.61
3411 3805 0.811281 GCAGCGTAAAAGATGCCCTT 59.189 50.000 0.00 0.00 46.63 3.95
3412 3806 2.482326 GCAGCGTAAAAGATGCCCT 58.518 52.632 0.00 0.00 46.63 5.19
3416 3810 3.621794 GCAATAGGCAGCGTAAAAGATG 58.378 45.455 0.00 0.00 43.97 2.90
3417 3811 3.971032 GCAATAGGCAGCGTAAAAGAT 57.029 42.857 0.00 0.00 43.97 2.40
3429 3823 2.289002 GTGTGATAGCTGTGCAATAGGC 59.711 50.000 0.00 0.00 45.13 3.93
3430 3824 2.541346 CGTGTGATAGCTGTGCAATAGG 59.459 50.000 0.00 0.00 0.00 2.57
3431 3825 2.541346 CCGTGTGATAGCTGTGCAATAG 59.459 50.000 0.00 0.00 0.00 1.73
3432 3826 2.093711 ACCGTGTGATAGCTGTGCAATA 60.094 45.455 0.00 0.00 0.00 1.90
3433 3827 1.339055 ACCGTGTGATAGCTGTGCAAT 60.339 47.619 0.00 0.00 0.00 3.56
3434 3828 0.034756 ACCGTGTGATAGCTGTGCAA 59.965 50.000 0.00 0.00 0.00 4.08
3435 3829 0.892063 TACCGTGTGATAGCTGTGCA 59.108 50.000 0.00 0.00 0.00 4.57
3436 3830 1.278238 GTACCGTGTGATAGCTGTGC 58.722 55.000 0.00 0.00 0.00 4.57
3437 3831 1.131693 TCGTACCGTGTGATAGCTGTG 59.868 52.381 0.00 0.00 0.00 3.66
3438 3832 1.456296 TCGTACCGTGTGATAGCTGT 58.544 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.