Multiple sequence alignment - TraesCS1B01G437700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G437700 chr1B 100.000 3642 0 0 1 3642 660452706 660456347 0.000000e+00 6726.0
1 TraesCS1B01G437700 chr1B 82.305 243 35 8 1120 1361 658511567 658511332 1.710000e-48 204.0
2 TraesCS1B01G437700 chr1B 89.552 134 14 0 1124 1257 658319862 658319729 1.740000e-38 171.0
3 TraesCS1B01G437700 chr1B 87.943 141 17 0 1117 1257 658403855 658403995 2.250000e-37 167.0
4 TraesCS1B01G437700 chr1B 80.368 163 27 2 2316 2477 113212637 113212479 6.390000e-23 119.0
5 TraesCS1B01G437700 chr1B 80.368 163 27 2 2316 2477 113314998 113314840 6.390000e-23 119.0
6 TraesCS1B01G437700 chr1B 80.368 163 27 2 2316 2477 113497786 113497628 6.390000e-23 119.0
7 TraesCS1B01G437700 chr1D 91.912 3598 173 44 97 3642 475170783 475174314 0.000000e+00 4924.0
8 TraesCS1B01G437700 chr1D 73.257 1391 290 58 1120 2477 473623544 473622203 2.010000e-117 433.0
9 TraesCS1B01G437700 chr1D 75.743 639 112 31 1120 1732 486334224 486333603 7.700000e-72 281.0
10 TraesCS1B01G437700 chr1D 80.769 78 9 6 329 404 115089223 115089150 5.080000e-04 56.5
11 TraesCS1B01G437700 chr1A 95.967 2752 86 10 855 3593 570855583 570858322 0.000000e+00 4444.0
12 TraesCS1B01G437700 chr1A 73.055 1388 299 51 1120 2477 567988666 567987324 4.350000e-114 422.0
13 TraesCS1B01G437700 chr1A 71.871 1518 295 80 1120 2570 583991137 583989685 2.110000e-82 316.0
14 TraesCS1B01G437700 chr1A 90.722 97 9 0 1 97 94787974 94787878 2.950000e-26 130.0
15 TraesCS1B01G437700 chr1A 97.143 35 1 0 837 871 570855533 570855567 3.930000e-05 60.2
16 TraesCS1B01G437700 chr1A 100.000 30 0 0 994 1023 583991254 583991225 5.080000e-04 56.5
17 TraesCS1B01G437700 chr6A 92.784 97 7 0 1 97 278453822 278453918 1.360000e-29 141.0
18 TraesCS1B01G437700 chr6A 80.769 78 11 4 324 397 371724287 371724364 1.410000e-04 58.4
19 TraesCS1B01G437700 chr5B 92.784 97 7 0 1 97 567265935 567266031 1.360000e-29 141.0
20 TraesCS1B01G437700 chr5D 91.753 97 8 0 1 97 113609395 113609299 6.340000e-28 135.0
21 TraesCS1B01G437700 chr5D 91.753 97 8 0 1 97 324424863 324424767 6.340000e-28 135.0
22 TraesCS1B01G437700 chr4D 91.837 98 7 1 1 97 123428376 123428279 6.340000e-28 135.0
23 TraesCS1B01G437700 chr3B 91.753 97 8 0 1 97 368701622 368701526 6.340000e-28 135.0
24 TraesCS1B01G437700 chrUn 90.909 99 7 1 1 97 459542008 459542106 8.210000e-27 132.0
25 TraesCS1B01G437700 chrUn 79.651 172 30 2 2307 2477 372933778 372933945 6.390000e-23 119.0
26 TraesCS1B01G437700 chrUn 76.119 201 41 5 2257 2455 83253928 83254123 8.320000e-17 99.0
27 TraesCS1B01G437700 chr2B 90.909 99 7 2 1 97 30665950 30666048 8.210000e-27 132.0
28 TraesCS1B01G437700 chr7A 73.826 298 65 12 2272 2564 701005281 701004992 4.970000e-19 106.0
29 TraesCS1B01G437700 chr7A 76.617 201 40 5 2257 2455 700980660 700980465 1.790000e-18 104.0
30 TraesCS1B01G437700 chr7A 73.379 293 68 9 2276 2564 700963368 700963082 2.310000e-17 100.0
31 TraesCS1B01G437700 chr7A 80.800 125 20 4 2257 2379 700944296 700944174 1.080000e-15 95.3
32 TraesCS1B01G437700 chr7A 82.292 96 10 6 2303 2394 611487254 611487162 3.900000e-10 76.8
33 TraesCS1B01G437700 chr7A 76.510 149 28 6 2326 2472 644457536 644457679 1.400000e-09 75.0
34 TraesCS1B01G437700 chr7A 97.500 40 1 0 326 365 644037583 644037544 6.530000e-08 69.4
35 TraesCS1B01G437700 chr7D 73.841 302 58 18 2272 2564 611013808 611013519 2.310000e-17 100.0
36 TraesCS1B01G437700 chr6D 92.105 38 3 0 342 379 263942809 263942772 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G437700 chr1B 660452706 660456347 3641 False 6726.0 6726 100.000 1 3642 1 chr1B.!!$F2 3641
1 TraesCS1B01G437700 chr1D 475170783 475174314 3531 False 4924.0 4924 91.912 97 3642 1 chr1D.!!$F1 3545
2 TraesCS1B01G437700 chr1D 473622203 473623544 1341 True 433.0 433 73.257 1120 2477 1 chr1D.!!$R2 1357
3 TraesCS1B01G437700 chr1D 486333603 486334224 621 True 281.0 281 75.743 1120 1732 1 chr1D.!!$R3 612
4 TraesCS1B01G437700 chr1A 570855533 570858322 2789 False 2252.1 4444 96.555 837 3593 2 chr1A.!!$F1 2756
5 TraesCS1B01G437700 chr1A 567987324 567988666 1342 True 422.0 422 73.055 1120 2477 1 chr1A.!!$R2 1357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.029567 TTAACGTGGCGGCAACAAAG 59.970 50.0 15.5 5.67 0.00 2.77 F
1137 1208 0.463204 ACGATCTCATCAGCCACCTG 59.537 55.0 0.0 0.00 40.54 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2042 1.512926 ATAGGAATGTCGAATGCGCC 58.487 50.0 4.18 0.0 37.46 6.53 R
3111 3215 0.818296 CAACCGAACCGAGGAGATCT 59.182 55.0 0.00 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.394545 AAAAACTCCGCAACTTACGC 57.605 45.000 0.00 0.00 0.00 4.42
48 49 1.589803 AAAACTCCGCAACTTACGCT 58.410 45.000 0.00 0.00 0.00 5.07
49 50 1.145803 AAACTCCGCAACTTACGCTC 58.854 50.000 0.00 0.00 0.00 5.03
50 51 0.317479 AACTCCGCAACTTACGCTCT 59.683 50.000 0.00 0.00 0.00 4.09
51 52 0.109226 ACTCCGCAACTTACGCTCTC 60.109 55.000 0.00 0.00 0.00 3.20
52 53 1.134530 CTCCGCAACTTACGCTCTCG 61.135 60.000 0.00 0.00 42.43 4.04
73 74 1.060937 GCAGCGGCATCTGTTAACG 59.939 57.895 3.18 0.00 40.72 3.18
74 75 1.635663 GCAGCGGCATCTGTTAACGT 61.636 55.000 3.18 0.00 40.72 3.99
75 76 0.095245 CAGCGGCATCTGTTAACGTG 59.905 55.000 1.45 1.41 0.00 4.49
76 77 1.019278 AGCGGCATCTGTTAACGTGG 61.019 55.000 1.45 0.00 0.00 4.94
77 78 1.423845 CGGCATCTGTTAACGTGGC 59.576 57.895 16.78 16.78 0.00 5.01
78 79 1.423845 GGCATCTGTTAACGTGGCG 59.576 57.895 13.46 0.00 0.00 5.69
79 80 1.423845 GCATCTGTTAACGTGGCGG 59.576 57.895 0.26 0.00 0.00 6.13
80 81 1.423845 CATCTGTTAACGTGGCGGC 59.576 57.895 0.00 0.00 0.00 6.53
81 82 1.004320 ATCTGTTAACGTGGCGGCA 60.004 52.632 7.97 7.97 0.00 5.69
82 83 0.604243 ATCTGTTAACGTGGCGGCAA 60.604 50.000 15.50 0.00 0.00 4.52
83 84 1.082366 CTGTTAACGTGGCGGCAAC 60.082 57.895 15.50 8.72 0.00 4.17
84 85 1.777030 CTGTTAACGTGGCGGCAACA 61.777 55.000 15.50 13.47 34.99 3.33
85 86 1.355916 GTTAACGTGGCGGCAACAA 59.644 52.632 15.50 2.20 0.00 2.83
86 87 0.248539 GTTAACGTGGCGGCAACAAA 60.249 50.000 15.50 3.00 0.00 2.83
87 88 0.029567 TTAACGTGGCGGCAACAAAG 59.970 50.000 15.50 5.67 0.00 2.77
88 89 0.814410 TAACGTGGCGGCAACAAAGA 60.814 50.000 15.50 0.00 0.00 2.52
89 90 1.658686 AACGTGGCGGCAACAAAGAA 61.659 50.000 15.50 0.00 0.00 2.52
90 91 1.064946 CGTGGCGGCAACAAAGAAA 59.935 52.632 15.50 0.00 0.00 2.52
91 92 0.526524 CGTGGCGGCAACAAAGAAAA 60.527 50.000 15.50 0.00 0.00 2.29
92 93 1.208259 GTGGCGGCAACAAAGAAAAG 58.792 50.000 15.50 0.00 0.00 2.27
93 94 1.107114 TGGCGGCAACAAAGAAAAGA 58.893 45.000 10.22 0.00 0.00 2.52
94 95 1.202359 TGGCGGCAACAAAGAAAAGAC 60.202 47.619 10.22 0.00 0.00 3.01
95 96 1.487482 GCGGCAACAAAGAAAAGACC 58.513 50.000 0.00 0.00 0.00 3.85
96 97 1.202359 GCGGCAACAAAGAAAAGACCA 60.202 47.619 0.00 0.00 0.00 4.02
97 98 2.731217 CGGCAACAAAGAAAAGACCAG 58.269 47.619 0.00 0.00 0.00 4.00
98 99 2.473816 GGCAACAAAGAAAAGACCAGC 58.526 47.619 0.00 0.00 0.00 4.85
99 100 2.101415 GGCAACAAAGAAAAGACCAGCT 59.899 45.455 0.00 0.00 0.00 4.24
100 101 3.375642 GCAACAAAGAAAAGACCAGCTC 58.624 45.455 0.00 0.00 0.00 4.09
101 102 3.621794 CAACAAAGAAAAGACCAGCTCG 58.378 45.455 0.00 0.00 0.00 5.03
113 114 2.362397 GACCAGCTCGTTCCTCATGATA 59.638 50.000 0.00 0.00 0.00 2.15
148 149 8.614469 TTTTGTTTCTTTGTTCTGTTTGGAAT 57.386 26.923 0.00 0.00 0.00 3.01
519 524 5.384063 AAATATGACATTGTTGCGAACCA 57.616 34.783 0.00 0.00 0.00 3.67
520 525 5.384063 AATATGACATTGTTGCGAACCAA 57.616 34.783 0.00 0.00 0.00 3.67
539 544 3.691118 CCAACATGTGGTCAGATGGTTAG 59.309 47.826 0.00 0.00 43.20 2.34
540 545 4.565444 CCAACATGTGGTCAGATGGTTAGA 60.565 45.833 0.00 0.00 43.20 2.10
542 547 4.836825 ACATGTGGTCAGATGGTTAGAAG 58.163 43.478 11.83 0.00 36.51 2.85
545 550 4.104086 TGTGGTCAGATGGTTAGAAGGAT 58.896 43.478 0.00 0.00 0.00 3.24
547 552 5.363868 TGTGGTCAGATGGTTAGAAGGATAG 59.636 44.000 0.00 0.00 0.00 2.08
549 554 5.964477 TGGTCAGATGGTTAGAAGGATAGTT 59.036 40.000 0.00 0.00 0.00 2.24
550 555 7.069578 GTGGTCAGATGGTTAGAAGGATAGTTA 59.930 40.741 0.00 0.00 0.00 2.24
571 577 6.160459 AGTTATATCCCATCTCACCAGGTTTT 59.840 38.462 0.00 0.00 0.00 2.43
573 579 6.786843 ATATCCCATCTCACCAGGTTTTAT 57.213 37.500 0.00 0.00 0.00 1.40
575 581 4.855340 TCCCATCTCACCAGGTTTTATTC 58.145 43.478 0.00 0.00 0.00 1.75
576 582 4.290985 TCCCATCTCACCAGGTTTTATTCA 59.709 41.667 0.00 0.00 0.00 2.57
579 585 6.833416 CCCATCTCACCAGGTTTTATTCATAA 59.167 38.462 0.00 0.00 0.00 1.90
584 590 8.792633 TCTCACCAGGTTTTATTCATAAACTTG 58.207 33.333 0.00 0.00 40.32 3.16
601 607 9.961265 CATAAACTTGATATTGATGCTCACATT 57.039 29.630 0.00 0.00 36.35 2.71
608 614 8.693542 TGATATTGATGCTCACATTATAGACG 57.306 34.615 0.00 0.00 36.35 4.18
610 616 9.144747 GATATTGATGCTCACATTATAGACGTT 57.855 33.333 0.00 0.00 36.35 3.99
611 617 7.792374 ATTGATGCTCACATTATAGACGTTT 57.208 32.000 0.00 0.00 36.35 3.60
612 618 7.609760 TTGATGCTCACATTATAGACGTTTT 57.390 32.000 0.00 0.00 36.35 2.43
613 619 7.003939 TGATGCTCACATTATAGACGTTTTG 57.996 36.000 0.00 0.00 36.35 2.44
615 621 6.795098 TGCTCACATTATAGACGTTTTGTT 57.205 33.333 0.00 0.00 0.00 2.83
616 622 7.197071 TGCTCACATTATAGACGTTTTGTTT 57.803 32.000 0.00 0.00 0.00 2.83
618 624 8.440059 TGCTCACATTATAGACGTTTTGTTTAG 58.560 33.333 0.00 0.00 0.00 1.85
619 625 8.653338 GCTCACATTATAGACGTTTTGTTTAGA 58.347 33.333 0.00 0.00 0.00 2.10
625 631 3.973657 AGACGTTTTGTTTAGAGCGAGA 58.026 40.909 0.00 0.00 0.00 4.04
628 634 2.470257 CGTTTTGTTTAGAGCGAGACGT 59.530 45.455 0.00 0.00 0.00 4.34
629 635 3.420162 CGTTTTGTTTAGAGCGAGACGTC 60.420 47.826 7.70 7.70 0.00 4.34
631 637 4.754372 TTTGTTTAGAGCGAGACGTCTA 57.246 40.909 20.09 0.00 0.00 2.59
634 640 3.937079 TGTTTAGAGCGAGACGTCTATGA 59.063 43.478 20.09 0.00 0.00 2.15
648 654 6.913132 AGACGTCTATGATGACTTCGTAAATG 59.087 38.462 18.46 0.00 39.32 2.32
650 656 7.700505 ACGTCTATGATGACTTCGTAAATGTA 58.299 34.615 0.00 0.00 35.00 2.29
651 657 7.642978 ACGTCTATGATGACTTCGTAAATGTAC 59.357 37.037 0.00 0.00 35.00 2.90
652 658 7.856398 CGTCTATGATGACTTCGTAAATGTACT 59.144 37.037 0.00 0.00 35.00 2.73
657 663 7.489160 TGATGACTTCGTAAATGTACTATGCT 58.511 34.615 0.00 0.00 0.00 3.79
658 664 7.435192 TGATGACTTCGTAAATGTACTATGCTG 59.565 37.037 0.00 0.00 0.00 4.41
659 665 6.040247 TGACTTCGTAAATGTACTATGCTGG 58.960 40.000 0.00 0.00 0.00 4.85
665 674 2.918712 ATGTACTATGCTGGTGGCTC 57.081 50.000 0.00 0.00 42.39 4.70
669 678 0.539051 ACTATGCTGGTGGCTCAGTC 59.461 55.000 9.43 4.12 42.39 3.51
680 689 1.138671 GCTCAGTCTCTCGAGGTGC 59.861 63.158 13.56 4.80 0.00 5.01
686 695 2.032799 CAGTCTCTCGAGGTGCTCATAC 59.967 54.545 13.56 0.51 0.00 2.39
691 700 2.152016 CTCGAGGTGCTCATACGGATA 58.848 52.381 3.91 0.00 0.00 2.59
692 701 2.750166 CTCGAGGTGCTCATACGGATAT 59.250 50.000 3.91 0.00 0.00 1.63
699 708 2.698274 TGCTCATACGGATATGGTGTGT 59.302 45.455 0.00 0.00 39.04 3.72
700 709 3.892588 TGCTCATACGGATATGGTGTGTA 59.107 43.478 0.00 0.00 39.04 2.90
705 714 5.303333 TCATACGGATATGGTGTGTATGTGT 59.697 40.000 9.65 0.00 41.78 3.72
706 715 3.792401 ACGGATATGGTGTGTATGTGTG 58.208 45.455 0.00 0.00 0.00 3.82
710 719 4.941263 GGATATGGTGTGTATGTGTGTGTT 59.059 41.667 0.00 0.00 0.00 3.32
711 720 5.064707 GGATATGGTGTGTATGTGTGTGTTC 59.935 44.000 0.00 0.00 0.00 3.18
712 721 3.268023 TGGTGTGTATGTGTGTGTTCA 57.732 42.857 0.00 0.00 0.00 3.18
715 724 4.994217 TGGTGTGTATGTGTGTGTTCATAG 59.006 41.667 0.00 0.00 0.00 2.23
718 727 5.348724 GTGTGTATGTGTGTGTTCATAGAGG 59.651 44.000 0.00 0.00 0.00 3.69
719 728 5.011635 TGTGTATGTGTGTGTTCATAGAGGT 59.988 40.000 0.00 0.00 0.00 3.85
722 731 2.969262 TGTGTGTGTTCATAGAGGTGGA 59.031 45.455 0.00 0.00 0.00 4.02
724 733 3.935203 GTGTGTGTTCATAGAGGTGGATG 59.065 47.826 0.00 0.00 0.00 3.51
726 735 4.775253 TGTGTGTTCATAGAGGTGGATGTA 59.225 41.667 0.00 0.00 0.00 2.29
727 736 5.425217 TGTGTGTTCATAGAGGTGGATGTAT 59.575 40.000 0.00 0.00 0.00 2.29
728 737 5.755375 GTGTGTTCATAGAGGTGGATGTATG 59.245 44.000 0.00 0.00 0.00 2.39
729 738 5.660864 TGTGTTCATAGAGGTGGATGTATGA 59.339 40.000 0.00 0.00 34.61 2.15
730 739 6.327365 TGTGTTCATAGAGGTGGATGTATGAT 59.673 38.462 0.00 0.00 35.91 2.45
731 740 7.147497 TGTGTTCATAGAGGTGGATGTATGATT 60.147 37.037 0.00 0.00 35.91 2.57
732 741 7.172190 GTGTTCATAGAGGTGGATGTATGATTG 59.828 40.741 0.00 0.00 35.91 2.67
751 760 1.269569 TGTGTGTGAGCGACTTCGATT 60.270 47.619 2.02 0.00 43.02 3.34
752 761 1.125021 GTGTGTGAGCGACTTCGATTG 59.875 52.381 2.02 0.00 43.02 2.67
755 772 2.341760 GTGTGAGCGACTTCGATTGTAC 59.658 50.000 2.02 0.00 43.02 2.90
758 775 3.612860 GTGAGCGACTTCGATTGTACAAT 59.387 43.478 20.93 20.93 43.02 2.71
759 776 4.091509 GTGAGCGACTTCGATTGTACAATT 59.908 41.667 21.63 6.00 43.02 2.32
763 780 7.865889 TGAGCGACTTCGATTGTACAATTATAT 59.134 33.333 21.63 7.62 43.02 0.86
796 813 9.463443 AGAAAACATTTGTTTCTAGTACATTGC 57.537 29.630 8.98 0.00 46.47 3.56
806 823 9.713713 TGTTTCTAGTACATTGCTGTATAAACA 57.286 29.630 0.00 0.00 39.93 2.83
835 868 4.162690 CGCTGGGCTGGGTCTACC 62.163 72.222 0.00 0.00 40.81 3.18
841 874 3.400054 GCTGGGTCTACCGCCCTT 61.400 66.667 1.85 0.00 46.22 3.95
871 904 2.098934 CGTCACATCCTCTCTCCAGAAG 59.901 54.545 0.00 0.00 0.00 2.85
872 905 2.430332 GTCACATCCTCTCTCCAGAAGG 59.570 54.545 0.00 0.00 0.00 3.46
1137 1208 0.463204 ACGATCTCATCAGCCACCTG 59.537 55.000 0.00 0.00 40.54 4.00
1943 2042 1.561542 AGTTCTCCAGGTAGGCCAATG 59.438 52.381 5.01 0.00 37.29 2.82
2154 2257 7.866729 AGAGACTATACGTCATTGTGAGTATG 58.133 38.462 0.00 0.00 45.32 2.39
2293 2397 1.000163 TCGTTCTTCTGTCTGCAGTCC 60.000 52.381 14.67 6.40 43.05 3.85
2512 2616 1.712401 GCAAATGGATGCGCTTTCAA 58.288 45.000 9.73 0.00 36.45 2.69
2524 2628 2.348404 GCGCTTTCAACGTAAACGGTTA 60.348 45.455 0.00 0.00 44.95 2.85
2532 2636 2.482864 ACGTAAACGGTTACAAGTGGG 58.517 47.619 22.44 7.99 44.95 4.61
3069 3173 2.690881 AGTTATCCTGGCCGCCCA 60.691 61.111 7.03 0.00 39.32 5.36
3134 3238 4.016706 CCTCGGTTCGGTTGGGCT 62.017 66.667 0.00 0.00 0.00 5.19
3151 3255 1.970640 GGCTGGTTCCTGGTCATTTTT 59.029 47.619 0.00 0.00 0.00 1.94
3427 3531 1.609208 TTGGCCTTCTTCAGTTCTGC 58.391 50.000 3.32 0.00 0.00 4.26
3439 3543 1.065401 CAGTTCTGCTTTTCCGTTGCA 59.935 47.619 0.00 0.00 35.30 4.08
3487 3591 3.363970 CGTCAAGGTGTGTTTGTATGAGC 60.364 47.826 0.00 0.00 0.00 4.26
3516 3643 6.762187 TGAACATCTGACAAAGTTTACGGTAA 59.238 34.615 0.00 0.00 0.00 2.85
3517 3644 7.442969 TGAACATCTGACAAAGTTTACGGTAAT 59.557 33.333 0.73 0.00 0.00 1.89
3518 3645 7.360575 ACATCTGACAAAGTTTACGGTAATC 57.639 36.000 0.73 1.19 0.00 1.75
3519 3646 6.932400 ACATCTGACAAAGTTTACGGTAATCA 59.068 34.615 10.62 5.82 0.00 2.57
3520 3647 7.117812 ACATCTGACAAAGTTTACGGTAATCAG 59.882 37.037 15.71 15.71 33.84 2.90
3521 3648 6.751157 TCTGACAAAGTTTACGGTAATCAGA 58.249 36.000 18.59 18.59 38.12 3.27
3522 3649 7.383687 TCTGACAAAGTTTACGGTAATCAGAT 58.616 34.615 18.59 2.55 36.14 2.90
3523 3650 7.330946 TCTGACAAAGTTTACGGTAATCAGATG 59.669 37.037 18.59 12.58 36.14 2.90
3524 3651 6.128391 TGACAAAGTTTACGGTAATCAGATGC 60.128 38.462 10.62 0.00 0.00 3.91
3525 3652 5.703592 ACAAAGTTTACGGTAATCAGATGCA 59.296 36.000 10.62 0.00 0.00 3.96
3526 3653 6.374333 ACAAAGTTTACGGTAATCAGATGCAT 59.626 34.615 0.00 0.00 0.00 3.96
3527 3654 5.991328 AGTTTACGGTAATCAGATGCATG 57.009 39.130 2.46 0.00 0.00 4.06
3528 3655 5.670485 AGTTTACGGTAATCAGATGCATGA 58.330 37.500 2.46 0.00 0.00 3.07
3529 3656 5.755375 AGTTTACGGTAATCAGATGCATGAG 59.245 40.000 2.46 0.00 31.44 2.90
3530 3657 5.529581 TTACGGTAATCAGATGCATGAGA 57.470 39.130 2.46 1.29 31.44 3.27
3531 3658 4.613925 ACGGTAATCAGATGCATGAGAT 57.386 40.909 2.46 4.08 31.44 2.75
3532 3659 4.313282 ACGGTAATCAGATGCATGAGATG 58.687 43.478 2.46 0.00 31.44 2.90
3533 3660 3.683340 CGGTAATCAGATGCATGAGATGG 59.317 47.826 2.46 0.00 31.44 3.51
3534 3661 4.562143 CGGTAATCAGATGCATGAGATGGA 60.562 45.833 2.46 0.00 31.44 3.41
3535 3662 4.936411 GGTAATCAGATGCATGAGATGGAG 59.064 45.833 2.46 0.00 32.88 3.86
3536 3663 3.704800 ATCAGATGCATGAGATGGAGG 57.295 47.619 2.46 0.00 32.88 4.30
3537 3664 1.697982 TCAGATGCATGAGATGGAGGG 59.302 52.381 2.46 0.00 32.88 4.30
3538 3665 1.697982 CAGATGCATGAGATGGAGGGA 59.302 52.381 2.46 0.00 32.88 4.20
3552 3679 1.072930 AGGGAGGGAGGTGGTGTTT 60.073 57.895 0.00 0.00 0.00 2.83
3568 3695 2.666022 GTGTTTGGTGTTTCAGTTGTGC 59.334 45.455 0.00 0.00 0.00 4.57
3593 3720 6.173339 TCTTAGTCCAATGAGTCAACCAATC 58.827 40.000 0.00 0.00 0.00 2.67
3594 3721 4.371624 AGTCCAATGAGTCAACCAATCA 57.628 40.909 0.00 0.00 0.00 2.57
3596 3723 3.820467 GTCCAATGAGTCAACCAATCACA 59.180 43.478 0.00 0.00 0.00 3.58
3608 3742 2.817258 ACCAATCACACAATGTAACGGG 59.183 45.455 0.00 0.00 0.00 5.28
3619 3753 4.274950 ACAATGTAACGGGACTCTGTTTTG 59.725 41.667 0.00 0.00 42.12 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.944709 AGCGTAAGTTGCGGAGTTTTT 59.055 42.857 15.25 0.00 41.68 1.94
29 30 1.529865 GAGCGTAAGTTGCGGAGTTTT 59.470 47.619 15.25 0.00 41.68 2.43
30 31 1.145803 GAGCGTAAGTTGCGGAGTTT 58.854 50.000 15.25 0.00 41.68 2.66
31 32 0.317479 AGAGCGTAAGTTGCGGAGTT 59.683 50.000 15.25 0.00 41.68 3.01
32 33 0.109226 GAGAGCGTAAGTTGCGGAGT 60.109 55.000 15.25 0.00 41.68 3.85
33 34 1.134530 CGAGAGCGTAAGTTGCGGAG 61.135 60.000 15.25 0.00 41.68 4.63
34 35 1.154093 CGAGAGCGTAAGTTGCGGA 60.154 57.895 15.25 0.00 41.68 5.54
35 36 3.374330 CGAGAGCGTAAGTTGCGG 58.626 61.111 15.25 0.00 41.68 5.69
55 56 1.060937 CGTTAACAGATGCCGCTGC 59.939 57.895 6.39 0.00 39.51 5.25
56 57 0.095245 CACGTTAACAGATGCCGCTG 59.905 55.000 6.39 1.74 41.63 5.18
57 58 1.019278 CCACGTTAACAGATGCCGCT 61.019 55.000 6.39 0.00 0.00 5.52
58 59 1.423845 CCACGTTAACAGATGCCGC 59.576 57.895 6.39 0.00 0.00 6.53
59 60 1.423845 GCCACGTTAACAGATGCCG 59.576 57.895 6.39 0.00 0.00 5.69
60 61 1.423845 CGCCACGTTAACAGATGCC 59.576 57.895 6.39 0.00 0.00 4.40
61 62 1.423845 CCGCCACGTTAACAGATGC 59.576 57.895 6.39 1.69 0.00 3.91
62 63 1.295357 TGCCGCCACGTTAACAGATG 61.295 55.000 6.39 0.67 0.00 2.90
63 64 0.604243 TTGCCGCCACGTTAACAGAT 60.604 50.000 6.39 0.00 0.00 2.90
64 65 1.227586 TTGCCGCCACGTTAACAGA 60.228 52.632 6.39 0.00 0.00 3.41
65 66 1.082366 GTTGCCGCCACGTTAACAG 60.082 57.895 6.39 1.29 0.00 3.16
66 67 1.374343 TTGTTGCCGCCACGTTAACA 61.374 50.000 6.39 0.00 32.29 2.41
67 68 0.248539 TTTGTTGCCGCCACGTTAAC 60.249 50.000 0.00 0.00 0.00 2.01
68 69 0.029567 CTTTGTTGCCGCCACGTTAA 59.970 50.000 0.00 0.00 0.00 2.01
69 70 0.814410 TCTTTGTTGCCGCCACGTTA 60.814 50.000 0.00 0.00 0.00 3.18
70 71 1.658686 TTCTTTGTTGCCGCCACGTT 61.659 50.000 0.00 0.00 0.00 3.99
71 72 1.658686 TTTCTTTGTTGCCGCCACGT 61.659 50.000 0.00 0.00 0.00 4.49
72 73 0.526524 TTTTCTTTGTTGCCGCCACG 60.527 50.000 0.00 0.00 0.00 4.94
73 74 1.202359 TCTTTTCTTTGTTGCCGCCAC 60.202 47.619 0.00 0.00 0.00 5.01
74 75 1.107114 TCTTTTCTTTGTTGCCGCCA 58.893 45.000 0.00 0.00 0.00 5.69
75 76 1.487482 GTCTTTTCTTTGTTGCCGCC 58.513 50.000 0.00 0.00 0.00 6.13
76 77 1.202359 TGGTCTTTTCTTTGTTGCCGC 60.202 47.619 0.00 0.00 0.00 6.53
77 78 2.731217 CTGGTCTTTTCTTTGTTGCCG 58.269 47.619 0.00 0.00 0.00 5.69
78 79 2.101415 AGCTGGTCTTTTCTTTGTTGCC 59.899 45.455 0.00 0.00 0.00 4.52
79 80 3.375642 GAGCTGGTCTTTTCTTTGTTGC 58.624 45.455 0.00 0.00 0.00 4.17
80 81 3.065371 ACGAGCTGGTCTTTTCTTTGTTG 59.935 43.478 5.23 0.00 0.00 3.33
81 82 3.279434 ACGAGCTGGTCTTTTCTTTGTT 58.721 40.909 5.23 0.00 0.00 2.83
82 83 2.919228 ACGAGCTGGTCTTTTCTTTGT 58.081 42.857 5.23 0.00 0.00 2.83
83 84 3.304057 GGAACGAGCTGGTCTTTTCTTTG 60.304 47.826 0.40 0.00 0.00 2.77
84 85 2.879026 GGAACGAGCTGGTCTTTTCTTT 59.121 45.455 0.40 0.00 0.00 2.52
85 86 2.104963 AGGAACGAGCTGGTCTTTTCTT 59.895 45.455 0.40 7.20 0.00 2.52
86 87 1.694696 AGGAACGAGCTGGTCTTTTCT 59.305 47.619 0.40 8.87 0.00 2.52
87 88 2.070028 GAGGAACGAGCTGGTCTTTTC 58.930 52.381 0.40 7.29 0.00 2.29
88 89 1.416401 TGAGGAACGAGCTGGTCTTTT 59.584 47.619 0.40 0.00 0.00 2.27
89 90 1.048601 TGAGGAACGAGCTGGTCTTT 58.951 50.000 0.40 1.51 0.00 2.52
90 91 1.066573 CATGAGGAACGAGCTGGTCTT 60.067 52.381 0.40 0.00 0.00 3.01
91 92 0.534412 CATGAGGAACGAGCTGGTCT 59.466 55.000 0.40 0.00 0.00 3.85
92 93 0.532573 TCATGAGGAACGAGCTGGTC 59.467 55.000 0.40 0.00 0.00 4.02
93 94 1.198713 ATCATGAGGAACGAGCTGGT 58.801 50.000 0.09 0.00 0.00 4.00
94 95 3.674528 ATATCATGAGGAACGAGCTGG 57.325 47.619 0.09 0.00 0.00 4.85
95 96 4.880759 AGAATATCATGAGGAACGAGCTG 58.119 43.478 0.09 0.00 0.00 4.24
96 97 4.832266 AGAGAATATCATGAGGAACGAGCT 59.168 41.667 0.09 0.00 0.00 4.09
97 98 5.048083 AGAGAGAATATCATGAGGAACGAGC 60.048 44.000 0.09 0.00 0.00 5.03
98 99 6.430925 AGAGAGAGAATATCATGAGGAACGAG 59.569 42.308 0.09 0.00 0.00 4.18
99 100 6.303054 AGAGAGAGAATATCATGAGGAACGA 58.697 40.000 0.09 0.00 0.00 3.85
100 101 6.573664 AGAGAGAGAATATCATGAGGAACG 57.426 41.667 0.09 0.00 0.00 3.95
101 102 9.044150 CAAAAGAGAGAGAATATCATGAGGAAC 57.956 37.037 0.09 0.00 0.00 3.62
113 114 9.183368 AGAACAAAGAAACAAAAGAGAGAGAAT 57.817 29.630 0.00 0.00 0.00 2.40
494 498 8.214721 TGGTTCGCAACAATGTCATATTTATA 57.785 30.769 0.00 0.00 0.00 0.98
500 504 3.565902 TGTTGGTTCGCAACAATGTCATA 59.434 39.130 4.83 0.00 39.29 2.15
501 505 2.360483 TGTTGGTTCGCAACAATGTCAT 59.640 40.909 4.83 0.00 39.29 3.06
519 524 4.908601 TCTAACCATCTGACCACATGTT 57.091 40.909 0.00 0.00 0.00 2.71
520 525 4.323792 CCTTCTAACCATCTGACCACATGT 60.324 45.833 0.00 0.00 0.00 3.21
522 527 4.104086 TCCTTCTAACCATCTGACCACAT 58.896 43.478 0.00 0.00 0.00 3.21
545 550 5.977533 ACCTGGTGAGATGGGATATAACTA 58.022 41.667 0.00 0.00 0.00 2.24
547 552 5.568620 AACCTGGTGAGATGGGATATAAC 57.431 43.478 0.00 0.00 0.00 1.89
549 554 7.888514 ATAAAACCTGGTGAGATGGGATATA 57.111 36.000 0.00 0.00 0.00 0.86
550 555 6.786843 ATAAAACCTGGTGAGATGGGATAT 57.213 37.500 0.00 0.00 0.00 1.63
555 560 7.880160 TTATGAATAAAACCTGGTGAGATGG 57.120 36.000 0.00 0.00 0.00 3.51
558 563 8.792633 CAAGTTTATGAATAAAACCTGGTGAGA 58.207 33.333 0.00 0.00 37.51 3.27
560 565 8.698973 TCAAGTTTATGAATAAAACCTGGTGA 57.301 30.769 0.00 0.00 37.51 4.02
591 597 6.985188 ACAAAACGTCTATAATGTGAGCAT 57.015 33.333 0.00 0.00 36.80 3.79
597 603 7.543172 TCGCTCTAAACAAAACGTCTATAATGT 59.457 33.333 0.00 0.00 0.00 2.71
601 607 6.744537 GTCTCGCTCTAAACAAAACGTCTATA 59.255 38.462 0.00 0.00 0.00 1.31
602 608 5.572126 GTCTCGCTCTAAACAAAACGTCTAT 59.428 40.000 0.00 0.00 0.00 1.98
603 609 4.913924 GTCTCGCTCTAAACAAAACGTCTA 59.086 41.667 0.00 0.00 0.00 2.59
604 610 3.734735 GTCTCGCTCTAAACAAAACGTCT 59.265 43.478 0.00 0.00 0.00 4.18
605 611 3.420162 CGTCTCGCTCTAAACAAAACGTC 60.420 47.826 0.00 0.00 0.00 4.34
606 612 2.470257 CGTCTCGCTCTAAACAAAACGT 59.530 45.455 0.00 0.00 0.00 3.99
607 613 2.470257 ACGTCTCGCTCTAAACAAAACG 59.530 45.455 0.00 0.00 0.00 3.60
608 614 3.734735 AGACGTCTCGCTCTAAACAAAAC 59.265 43.478 13.58 0.00 0.00 2.43
610 616 3.637998 AGACGTCTCGCTCTAAACAAA 57.362 42.857 13.58 0.00 0.00 2.83
611 617 4.393990 TCATAGACGTCTCGCTCTAAACAA 59.606 41.667 23.89 0.00 0.00 2.83
612 618 3.937079 TCATAGACGTCTCGCTCTAAACA 59.063 43.478 23.89 0.00 0.00 2.83
613 619 4.533225 TCATAGACGTCTCGCTCTAAAC 57.467 45.455 23.89 0.00 0.00 2.01
615 621 4.211584 GTCATCATAGACGTCTCGCTCTAA 59.788 45.833 23.89 2.26 0.00 2.10
616 622 3.741856 GTCATCATAGACGTCTCGCTCTA 59.258 47.826 23.89 3.13 0.00 2.43
618 624 2.546368 AGTCATCATAGACGTCTCGCTC 59.454 50.000 23.89 7.52 43.24 5.03
619 625 2.566913 AGTCATCATAGACGTCTCGCT 58.433 47.619 23.89 5.30 43.24 4.93
625 631 6.561614 ACATTTACGAAGTCATCATAGACGT 58.438 36.000 0.00 0.00 43.93 4.34
631 637 8.144478 AGCATAGTACATTTACGAAGTCATCAT 58.856 33.333 0.00 0.00 43.93 2.45
634 640 6.701841 CCAGCATAGTACATTTACGAAGTCAT 59.298 38.462 0.00 0.00 43.93 3.06
655 661 1.217779 GAGAGACTGAGCCACCAGC 59.782 63.158 0.00 0.00 44.25 4.85
657 663 0.962855 CTCGAGAGACTGAGCCACCA 60.963 60.000 6.58 0.00 35.39 4.17
658 664 1.662438 CCTCGAGAGACTGAGCCACC 61.662 65.000 15.71 0.00 35.39 4.61
659 665 0.963355 ACCTCGAGAGACTGAGCCAC 60.963 60.000 15.71 0.00 35.39 5.01
665 674 1.102154 ATGAGCACCTCGAGAGACTG 58.898 55.000 15.71 4.57 35.39 3.51
669 678 0.309302 CCGTATGAGCACCTCGAGAG 59.691 60.000 15.71 7.27 32.35 3.20
680 689 5.863935 CACATACACACCATATCCGTATGAG 59.136 44.000 13.21 3.55 41.12 2.90
686 695 3.555547 CACACACATACACACCATATCCG 59.444 47.826 0.00 0.00 0.00 4.18
691 700 3.814625 TGAACACACACATACACACCAT 58.185 40.909 0.00 0.00 0.00 3.55
692 701 3.268023 TGAACACACACATACACACCA 57.732 42.857 0.00 0.00 0.00 4.17
699 708 4.775253 TCCACCTCTATGAACACACACATA 59.225 41.667 0.00 0.00 0.00 2.29
700 709 3.582647 TCCACCTCTATGAACACACACAT 59.417 43.478 0.00 0.00 0.00 3.21
705 714 5.660864 TCATACATCCACCTCTATGAACACA 59.339 40.000 0.00 0.00 0.00 3.72
706 715 6.161855 TCATACATCCACCTCTATGAACAC 57.838 41.667 0.00 0.00 0.00 3.32
710 719 6.327365 ACACAATCATACATCCACCTCTATGA 59.673 38.462 0.00 0.00 31.74 2.15
711 720 6.426025 CACACAATCATACATCCACCTCTATG 59.574 42.308 0.00 0.00 0.00 2.23
712 721 6.100279 ACACACAATCATACATCCACCTCTAT 59.900 38.462 0.00 0.00 0.00 1.98
715 724 4.333649 CACACACAATCATACATCCACCTC 59.666 45.833 0.00 0.00 0.00 3.85
718 727 4.201851 GCTCACACACAATCATACATCCAC 60.202 45.833 0.00 0.00 0.00 4.02
719 728 3.940852 GCTCACACACAATCATACATCCA 59.059 43.478 0.00 0.00 0.00 3.41
722 731 3.618594 GTCGCTCACACACAATCATACAT 59.381 43.478 0.00 0.00 0.00 2.29
724 733 3.254060 AGTCGCTCACACACAATCATAC 58.746 45.455 0.00 0.00 0.00 2.39
726 735 2.462456 AGTCGCTCACACACAATCAT 57.538 45.000 0.00 0.00 0.00 2.45
727 736 2.135139 GAAGTCGCTCACACACAATCA 58.865 47.619 0.00 0.00 0.00 2.57
728 737 1.125021 CGAAGTCGCTCACACACAATC 59.875 52.381 0.00 0.00 0.00 2.67
729 738 1.139989 CGAAGTCGCTCACACACAAT 58.860 50.000 0.00 0.00 0.00 2.71
730 739 0.101579 TCGAAGTCGCTCACACACAA 59.898 50.000 0.00 0.00 39.60 3.33
731 740 0.313987 ATCGAAGTCGCTCACACACA 59.686 50.000 0.00 0.00 39.60 3.72
732 741 1.125021 CAATCGAAGTCGCTCACACAC 59.875 52.381 0.00 0.00 39.60 3.82
774 791 7.940850 ACAGCAATGTACTAGAAACAAATGTT 58.059 30.769 0.00 0.00 40.50 2.71
814 831 2.509931 TAGACCCAGCCCAGCGTAGT 62.510 60.000 0.00 0.00 0.00 2.73
815 832 1.756950 TAGACCCAGCCCAGCGTAG 60.757 63.158 0.00 0.00 0.00 3.51
816 833 2.056223 GTAGACCCAGCCCAGCGTA 61.056 63.158 0.00 0.00 0.00 4.42
835 868 4.394712 ACGGAGAGGCAAAGGGCG 62.395 66.667 0.00 0.00 46.16 6.13
841 874 0.904865 AGGATGTGACGGAGAGGCAA 60.905 55.000 0.00 0.00 41.33 4.52
922 987 4.266714 GGATTTCAGGATTTGGGAACGTA 58.733 43.478 0.00 0.00 0.00 3.57
1377 1463 3.842923 CAGCGGTCGATCTGGCCT 61.843 66.667 3.32 0.00 0.00 5.19
1943 2042 1.512926 ATAGGAATGTCGAATGCGCC 58.487 50.000 4.18 0.00 37.46 6.53
2133 2236 6.144078 TGCATACTCACAATGACGTATAGT 57.856 37.500 0.00 0.00 0.00 2.12
2293 2397 1.806496 TCATATCCTCCTGTGGGTGG 58.194 55.000 0.00 0.00 45.08 4.61
2455 2559 5.857268 ACAACTCCAATTTCCATTTCCTTG 58.143 37.500 0.00 0.00 0.00 3.61
2506 2610 5.673717 CACTTGTAACCGTTTACGTTGAAAG 59.326 40.000 0.00 0.00 40.61 2.62
2512 2616 2.482864 CCCACTTGTAACCGTTTACGT 58.517 47.619 0.00 0.00 40.61 3.57
2524 2628 3.185455 AGAAGCTCTATTCCCCACTTGT 58.815 45.455 0.00 0.00 0.00 3.16
2532 2636 3.005261 TGCATCTCGAGAAGCTCTATTCC 59.995 47.826 34.46 11.34 39.29 3.01
3111 3215 0.818296 CAACCGAACCGAGGAGATCT 59.182 55.000 0.00 0.00 0.00 2.75
3134 3238 1.691434 GCCAAAAATGACCAGGAACCA 59.309 47.619 0.00 0.00 0.00 3.67
3245 3349 4.585955 AAGCGAGACACTCTGAAACTTA 57.414 40.909 0.00 0.00 0.00 2.24
3246 3350 3.460857 AAGCGAGACACTCTGAAACTT 57.539 42.857 0.00 0.00 0.00 2.66
3247 3351 3.385577 GAAAGCGAGACACTCTGAAACT 58.614 45.455 0.00 0.00 0.00 2.66
3410 3514 1.902938 AAGCAGAACTGAAGAAGGCC 58.097 50.000 5.97 0.00 0.00 5.19
3427 3531 0.179215 CGCTAGCTGCAACGGAAAAG 60.179 55.000 13.93 0.00 43.06 2.27
3439 3543 2.886081 CACAGAGATGAAACGCTAGCT 58.114 47.619 13.93 0.00 0.00 3.32
3487 3591 5.505173 AAACTTTGTCAGATGTTCAGTGG 57.495 39.130 0.00 0.00 0.00 4.00
3516 3643 2.306219 CCCTCCATCTCATGCATCTGAT 59.694 50.000 0.00 0.18 0.00 2.90
3517 3644 1.697982 CCCTCCATCTCATGCATCTGA 59.302 52.381 0.00 0.00 0.00 3.27
3518 3645 1.697982 TCCCTCCATCTCATGCATCTG 59.302 52.381 0.00 0.00 0.00 2.90
3519 3646 1.979308 CTCCCTCCATCTCATGCATCT 59.021 52.381 0.00 0.00 0.00 2.90
3520 3647 1.003349 CCTCCCTCCATCTCATGCATC 59.997 57.143 0.00 0.00 0.00 3.91
3521 3648 1.065647 CCTCCCTCCATCTCATGCAT 58.934 55.000 0.00 0.00 0.00 3.96
3522 3649 1.058428 CCCTCCCTCCATCTCATGCA 61.058 60.000 0.00 0.00 0.00 3.96
3523 3650 0.765903 TCCCTCCCTCCATCTCATGC 60.766 60.000 0.00 0.00 0.00 4.06
3524 3651 1.350071 CTCCCTCCCTCCATCTCATG 58.650 60.000 0.00 0.00 0.00 3.07
3525 3652 0.193069 CCTCCCTCCCTCCATCTCAT 59.807 60.000 0.00 0.00 0.00 2.90
3526 3653 1.231751 ACCTCCCTCCCTCCATCTCA 61.232 60.000 0.00 0.00 0.00 3.27
3527 3654 0.762461 CACCTCCCTCCCTCCATCTC 60.762 65.000 0.00 0.00 0.00 2.75
3528 3655 1.316266 CACCTCCCTCCCTCCATCT 59.684 63.158 0.00 0.00 0.00 2.90
3529 3656 1.768077 CCACCTCCCTCCCTCCATC 60.768 68.421 0.00 0.00 0.00 3.51
3530 3657 2.374342 CCACCTCCCTCCCTCCAT 59.626 66.667 0.00 0.00 0.00 3.41
3531 3658 3.208592 ACCACCTCCCTCCCTCCA 61.209 66.667 0.00 0.00 0.00 3.86
3532 3659 2.689034 CACCACCTCCCTCCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
3533 3660 1.134438 AAACACCACCTCCCTCCCTC 61.134 60.000 0.00 0.00 0.00 4.30
3534 3661 1.072930 AAACACCACCTCCCTCCCT 60.073 57.895 0.00 0.00 0.00 4.20
3535 3662 1.074951 CAAACACCACCTCCCTCCC 59.925 63.158 0.00 0.00 0.00 4.30
3536 3663 1.074951 CCAAACACCACCTCCCTCC 59.925 63.158 0.00 0.00 0.00 4.30
3537 3664 0.537371 CACCAAACACCACCTCCCTC 60.537 60.000 0.00 0.00 0.00 4.30
3538 3665 1.286305 ACACCAAACACCACCTCCCT 61.286 55.000 0.00 0.00 0.00 4.20
3552 3679 2.418368 AGAGCACAACTGAAACACCA 57.582 45.000 0.00 0.00 0.00 4.17
3568 3695 5.152623 TGGTTGACTCATTGGACTAAGAG 57.847 43.478 0.00 0.00 0.00 2.85
3593 3720 2.736721 CAGAGTCCCGTTACATTGTGTG 59.263 50.000 0.00 0.00 0.00 3.82
3594 3721 2.367567 ACAGAGTCCCGTTACATTGTGT 59.632 45.455 0.00 0.00 0.00 3.72
3596 3723 3.764237 AACAGAGTCCCGTTACATTGT 57.236 42.857 0.00 0.00 0.00 2.71
3608 3742 4.593956 AGGGGATGATTCAAAACAGAGTC 58.406 43.478 0.00 0.00 0.00 3.36
3619 3753 5.659440 TTGTAGCAAAAAGGGGATGATTC 57.341 39.130 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.