Multiple sequence alignment - TraesCS1B01G436700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G436700 chr1B 100.000 2543 0 0 1 2543 659776659 659779201 0.000000e+00 4697.0
1 TraesCS1B01G436700 chr1D 89.840 1939 68 42 26 1888 474506188 474508073 0.000000e+00 2370.0
2 TraesCS1B01G436700 chr1D 83.764 271 26 11 2278 2543 474508867 474509124 9.090000e-60 241.0
3 TraesCS1B01G436700 chr1D 100.000 28 0 0 1 28 474506150 474506177 5.000000e-03 52.8
4 TraesCS1B01G436700 chr1A 89.648 1932 75 41 26 1871 569132194 569134086 0.000000e+00 2344.0
5 TraesCS1B01G436700 chr1A 83.209 268 29 12 2277 2540 569137794 569138049 5.470000e-57 231.0
6 TraesCS1B01G436700 chr1A 78.175 252 34 12 2277 2523 569134973 569135208 9.490000e-30 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G436700 chr1B 659776659 659779201 2542 False 4697.000000 4697 100.000000 1 2543 1 chr1B.!!$F1 2542
1 TraesCS1B01G436700 chr1D 474506150 474509124 2974 False 887.933333 2370 91.201333 1 2543 3 chr1D.!!$F1 2542
2 TraesCS1B01G436700 chr1A 569132194 569138049 5855 False 905.333333 2344 83.677333 26 2540 3 chr1A.!!$F1 2514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 563 0.178992 TGAGGGCTGGTTTTGGTCTG 60.179 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2116 0.036022 AGCCTCTCCAGTTCAGTTGC 59.964 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 243 2.032681 GGACGCAGGTGCCTCTTT 59.967 61.111 0.00 0.00 37.91 2.52
405 428 1.006922 CCATCGCTCGCTGCTGATA 60.007 57.895 0.00 0.00 40.11 2.15
443 476 0.847035 GAATGAAGGCGACGACGATC 59.153 55.000 12.29 6.36 42.66 3.69
444 477 0.866061 AATGAAGGCGACGACGATCG 60.866 55.000 14.88 14.88 46.93 3.69
445 478 1.712018 ATGAAGGCGACGACGATCGA 61.712 55.000 24.34 0.00 45.13 3.59
446 479 1.009900 GAAGGCGACGACGATCGAT 60.010 57.895 24.34 5.96 45.13 3.59
507 542 6.820656 GGTTGATATATATGCTTGGAGTGAGG 59.179 42.308 0.00 0.00 0.00 3.86
509 544 7.559335 TGATATATATGCTTGGAGTGAGGTT 57.441 36.000 0.00 0.00 0.00 3.50
519 554 1.462238 AGTGAGGTTGAGGGCTGGT 60.462 57.895 0.00 0.00 0.00 4.00
528 563 0.178992 TGAGGGCTGGTTTTGGTCTG 60.179 55.000 0.00 0.00 0.00 3.51
533 568 0.385390 GCTGGTTTTGGTCTGGTGTG 59.615 55.000 0.00 0.00 0.00 3.82
596 631 2.840066 TTGTTGTTCCTTGCCGGCG 61.840 57.895 23.90 8.36 0.00 6.46
759 841 1.325355 GTGCTGGATTGATGGATGGG 58.675 55.000 0.00 0.00 0.00 4.00
793 875 3.628942 TCCTTTTGCATGGATCGATTCTG 59.371 43.478 5.06 2.26 0.00 3.02
807 889 2.286831 CGATTCTGTCTGCATGAATGGC 60.287 50.000 0.00 0.00 31.49 4.40
808 890 1.466856 TTCTGTCTGCATGAATGGCC 58.533 50.000 0.00 0.00 0.00 5.36
843 949 0.801067 CCGATCCGACGGTCAGAAAC 60.801 60.000 14.79 1.14 46.70 2.78
975 1084 1.688269 GGGAGAGCAGAGCAGAGCAT 61.688 60.000 0.00 0.00 0.00 3.79
988 1097 2.674954 CAGAGCATAGCATCCGAGAAG 58.325 52.381 0.00 0.00 0.00 2.85
995 1104 0.829333 AGCATCCGAGAAGCACTCAT 59.171 50.000 10.61 0.00 45.14 2.90
1026 1138 3.706373 GCTTCCACCGCCCTCTCA 61.706 66.667 0.00 0.00 0.00 3.27
1036 1148 2.735772 GCCCTCTCATCGGCCTTCA 61.736 63.158 0.00 0.00 39.39 3.02
1093 1205 2.398554 CGGCCACACCCATTCTTCG 61.399 63.158 2.24 0.00 33.26 3.79
1101 1213 0.255890 ACCCATTCTTCGTCCCCATG 59.744 55.000 0.00 0.00 0.00 3.66
1570 1682 4.077188 GACGACGTTGCTGCTGCC 62.077 66.667 13.47 0.00 38.71 4.85
1571 1683 4.609018 ACGACGTTGCTGCTGCCT 62.609 61.111 13.47 0.00 38.71 4.75
1572 1684 2.432456 CGACGTTGCTGCTGCCTA 60.432 61.111 13.47 0.00 38.71 3.93
1573 1685 2.730672 CGACGTTGCTGCTGCCTAC 61.731 63.158 13.47 10.05 38.71 3.18
1574 1686 2.730672 GACGTTGCTGCTGCCTACG 61.731 63.158 26.85 26.85 45.34 3.51
1592 1704 3.160777 ACGTTGCTACTAGGAATTCCG 57.839 47.619 18.82 8.29 42.08 4.30
1683 1804 7.352719 CAAGATCTTGCGTCCTTTATATACC 57.647 40.000 21.96 0.00 33.45 2.73
1738 1859 3.197766 ACGATGCCTACCTGAATTCTGAA 59.802 43.478 13.45 0.00 0.00 3.02
1739 1860 4.141620 ACGATGCCTACCTGAATTCTGAAT 60.142 41.667 13.45 0.00 0.00 2.57
1740 1861 4.818546 CGATGCCTACCTGAATTCTGAATT 59.181 41.667 15.09 15.09 0.00 2.17
1809 1948 5.236478 GCATTACGATATGTACTGGCTGTTT 59.764 40.000 1.31 0.00 35.03 2.83
1862 2002 6.320494 AGCCACTTGAGTTCGATATACTAG 57.680 41.667 0.00 0.00 0.00 2.57
1872 2012 5.764192 AGTTCGATATACTAGGTGACTGACC 59.236 44.000 0.00 0.00 46.58 4.02
1880 2020 2.734591 GTGACTGACCACCTGCGA 59.265 61.111 0.00 0.00 0.00 5.10
1897 2075 1.906966 GCGATGTTGCAGAACAATTCG 59.093 47.619 9.23 9.23 45.23 3.34
1898 2076 2.665519 GCGATGTTGCAGAACAATTCGT 60.666 45.455 13.27 0.00 45.23 3.85
1916 2094 0.237498 GTTGCGCTCAACCTGTAACC 59.763 55.000 9.73 0.00 45.15 2.85
1919 2097 1.276705 TGCGCTCAACCTGTAACCATA 59.723 47.619 9.73 0.00 0.00 2.74
1920 2098 1.933853 GCGCTCAACCTGTAACCATAG 59.066 52.381 0.00 0.00 0.00 2.23
1921 2099 2.677037 GCGCTCAACCTGTAACCATAGT 60.677 50.000 0.00 0.00 0.00 2.12
1922 2100 3.596214 CGCTCAACCTGTAACCATAGTT 58.404 45.455 0.00 0.00 40.15 2.24
1924 2102 4.142902 CGCTCAACCTGTAACCATAGTTTG 60.143 45.833 0.00 0.00 37.42 2.93
1925 2103 5.001232 GCTCAACCTGTAACCATAGTTTGA 58.999 41.667 0.00 0.00 37.42 2.69
1926 2104 5.472137 GCTCAACCTGTAACCATAGTTTGAA 59.528 40.000 0.00 0.00 37.42 2.69
1927 2105 6.016610 GCTCAACCTGTAACCATAGTTTGAAA 60.017 38.462 0.00 0.00 37.42 2.69
1928 2106 7.469456 GCTCAACCTGTAACCATAGTTTGAAAA 60.469 37.037 0.00 0.00 37.42 2.29
1929 2107 8.294954 TCAACCTGTAACCATAGTTTGAAAAA 57.705 30.769 0.00 0.00 37.42 1.94
1930 2108 8.192110 TCAACCTGTAACCATAGTTTGAAAAAC 58.808 33.333 0.00 0.00 37.42 2.43
1931 2109 7.046292 ACCTGTAACCATAGTTTGAAAAACC 57.954 36.000 0.00 0.00 37.42 3.27
1933 2111 7.124448 ACCTGTAACCATAGTTTGAAAAACCAA 59.876 33.333 0.00 0.00 37.42 3.67
1934 2112 7.651704 CCTGTAACCATAGTTTGAAAAACCAAG 59.348 37.037 0.00 0.00 37.42 3.61
1935 2113 6.981559 TGTAACCATAGTTTGAAAAACCAAGC 59.018 34.615 0.00 0.00 37.42 4.01
1936 2114 4.956085 ACCATAGTTTGAAAAACCAAGCC 58.044 39.130 0.00 0.00 0.00 4.35
1937 2115 3.987220 CCATAGTTTGAAAAACCAAGCCG 59.013 43.478 0.00 0.00 0.00 5.52
1938 2116 2.595124 AGTTTGAAAAACCAAGCCGG 57.405 45.000 0.00 0.00 42.50 6.13
1939 2117 0.934496 GTTTGAAAAACCAAGCCGGC 59.066 50.000 21.89 21.89 39.03 6.13
1941 2119 0.537188 TTGAAAAACCAAGCCGGCAA 59.463 45.000 31.54 6.84 39.03 4.52
1942 2120 0.179097 TGAAAAACCAAGCCGGCAAC 60.179 50.000 31.54 8.82 39.03 4.17
1943 2121 0.104120 GAAAAACCAAGCCGGCAACT 59.896 50.000 31.54 9.92 39.03 3.16
1944 2122 0.179086 AAAAACCAAGCCGGCAACTG 60.179 50.000 31.54 21.67 39.03 3.16
1945 2123 1.040339 AAAACCAAGCCGGCAACTGA 61.040 50.000 31.54 0.00 39.03 3.41
1946 2124 1.040339 AAACCAAGCCGGCAACTGAA 61.040 50.000 31.54 0.00 39.03 3.02
1947 2125 1.734388 AACCAAGCCGGCAACTGAAC 61.734 55.000 31.54 0.00 39.03 3.18
1948 2126 1.898574 CCAAGCCGGCAACTGAACT 60.899 57.895 31.54 0.76 0.00 3.01
1949 2127 1.283793 CAAGCCGGCAACTGAACTG 59.716 57.895 31.54 8.22 0.00 3.16
1950 2128 1.898574 AAGCCGGCAACTGAACTGG 60.899 57.895 31.54 0.00 35.26 4.00
1951 2129 2.281484 GCCGGCAACTGAACTGGA 60.281 61.111 24.80 0.00 33.88 3.86
1952 2130 2.328099 GCCGGCAACTGAACTGGAG 61.328 63.158 24.80 0.00 33.88 3.86
1963 2677 0.972883 GAACTGGAGAGGCTGTCAGT 59.027 55.000 14.14 11.58 41.59 3.41
1965 2679 0.972883 ACTGGAGAGGCTGTCAGTTC 59.027 55.000 14.14 0.32 37.18 3.01
1966 2680 0.972134 CTGGAGAGGCTGTCAGTTCA 59.028 55.000 14.14 1.26 0.00 3.18
1968 2682 0.248843 GGAGAGGCTGTCAGTTCAGG 59.751 60.000 14.14 0.00 36.12 3.86
1969 2683 0.972883 GAGAGGCTGTCAGTTCAGGT 59.027 55.000 6.80 0.00 36.12 4.00
1970 2684 1.346068 GAGAGGCTGTCAGTTCAGGTT 59.654 52.381 6.80 0.00 36.12 3.50
1973 2687 2.952310 GAGGCTGTCAGTTCAGGTTTTT 59.048 45.455 0.93 0.00 36.12 1.94
1975 2689 3.883489 AGGCTGTCAGTTCAGGTTTTTAC 59.117 43.478 0.93 0.00 36.12 2.01
1976 2690 3.883489 GGCTGTCAGTTCAGGTTTTTACT 59.117 43.478 0.93 0.00 36.12 2.24
1977 2691 5.061179 GGCTGTCAGTTCAGGTTTTTACTA 58.939 41.667 0.93 0.00 36.12 1.82
1978 2692 5.179555 GGCTGTCAGTTCAGGTTTTTACTAG 59.820 44.000 0.93 0.00 36.12 2.57
1979 2693 5.758784 GCTGTCAGTTCAGGTTTTTACTAGT 59.241 40.000 0.00 0.00 36.12 2.57
1982 2696 6.759827 TGTCAGTTCAGGTTTTTACTAGTCAC 59.240 38.462 0.00 0.00 0.00 3.67
1983 2697 6.759827 GTCAGTTCAGGTTTTTACTAGTCACA 59.240 38.462 0.00 0.00 0.00 3.58
1984 2698 7.441458 GTCAGTTCAGGTTTTTACTAGTCACAT 59.559 37.037 0.00 0.00 0.00 3.21
1987 2771 8.621286 AGTTCAGGTTTTTACTAGTCACATTTG 58.379 33.333 0.00 0.00 0.00 2.32
1991 2775 7.167468 CAGGTTTTTACTAGTCACATTTGCAAC 59.833 37.037 0.00 0.00 0.00 4.17
1992 2776 6.975772 GGTTTTTACTAGTCACATTTGCAACA 59.024 34.615 0.00 0.00 0.00 3.33
1996 2780 9.891828 TTTTACTAGTCACATTTGCAACAATAG 57.108 29.630 0.00 0.00 0.00 1.73
1997 2781 8.840833 TTACTAGTCACATTTGCAACAATAGA 57.159 30.769 0.00 0.00 0.00 1.98
2004 2788 7.546667 GTCACATTTGCAACAATAGATCCAAAT 59.453 33.333 0.00 0.00 34.35 2.32
2075 2859 9.640963 GAATACAGATAATACTGGATGTACACC 57.359 37.037 0.00 2.40 40.15 4.16
2105 2889 9.969001 AATAAATCTAAAAGTGTTACTAGCCCA 57.031 29.630 0.00 0.00 0.00 5.36
2106 2890 7.923414 AAATCTAAAAGTGTTACTAGCCCAG 57.077 36.000 0.00 0.00 0.00 4.45
2109 2893 6.228258 TCTAAAAGTGTTACTAGCCCAGTTG 58.772 40.000 0.00 0.00 38.80 3.16
2110 2894 3.418684 AAGTGTTACTAGCCCAGTTGG 57.581 47.619 0.00 0.00 38.80 3.77
2112 2896 2.709397 AGTGTTACTAGCCCAGTTGGTT 59.291 45.455 0.00 0.00 38.80 3.67
2114 2898 3.999001 GTGTTACTAGCCCAGTTGGTTAC 59.001 47.826 0.00 0.00 38.80 2.50
2115 2899 3.905591 TGTTACTAGCCCAGTTGGTTACT 59.094 43.478 0.00 0.00 38.80 2.24
2116 2900 5.047092 GTGTTACTAGCCCAGTTGGTTACTA 60.047 44.000 0.00 0.00 38.80 1.82
2117 2901 5.722923 TGTTACTAGCCCAGTTGGTTACTAT 59.277 40.000 0.00 0.00 38.80 2.12
2118 2902 4.755266 ACTAGCCCAGTTGGTTACTATG 57.245 45.455 0.00 0.00 34.56 2.23
2119 2903 2.420058 AGCCCAGTTGGTTACTATGC 57.580 50.000 0.00 0.00 34.56 3.14
2122 4508 2.620627 GCCCAGTTGGTTACTATGCCTT 60.621 50.000 0.00 0.00 34.56 4.35
2129 4515 7.250569 CAGTTGGTTACTATGCCTTTAACATG 58.749 38.462 0.00 0.00 34.56 3.21
2135 4521 2.678471 ATGCCTTTAACATGCCTTGC 57.322 45.000 0.00 0.00 0.00 4.01
2136 4522 0.607620 TGCCTTTAACATGCCTTGCC 59.392 50.000 0.00 0.00 0.00 4.52
2137 4523 0.897621 GCCTTTAACATGCCTTGCCT 59.102 50.000 0.00 0.00 0.00 4.75
2138 4524 1.134995 GCCTTTAACATGCCTTGCCTC 60.135 52.381 0.00 0.00 0.00 4.70
2139 4525 2.170166 CCTTTAACATGCCTTGCCTCA 58.830 47.619 0.00 0.00 0.00 3.86
2141 4527 3.367703 CCTTTAACATGCCTTGCCTCAAG 60.368 47.826 0.00 0.00 40.75 3.02
2142 4528 2.877097 TAACATGCCTTGCCTCAAGA 57.123 45.000 8.04 0.00 43.42 3.02
2143 4529 2.226962 AACATGCCTTGCCTCAAGAT 57.773 45.000 8.04 0.00 43.42 2.40
2145 4531 3.370840 ACATGCCTTGCCTCAAGATTA 57.629 42.857 8.04 0.00 43.42 1.75
2146 4532 3.285484 ACATGCCTTGCCTCAAGATTAG 58.715 45.455 8.04 0.00 43.42 1.73
2148 4534 1.635487 TGCCTTGCCTCAAGATTAGGT 59.365 47.619 8.04 0.00 43.42 3.08
2149 4535 2.019984 GCCTTGCCTCAAGATTAGGTG 58.980 52.381 8.04 0.00 43.42 4.00
2150 4536 2.619074 GCCTTGCCTCAAGATTAGGTGT 60.619 50.000 8.04 0.00 43.42 4.16
2151 4537 3.690460 CCTTGCCTCAAGATTAGGTGTT 58.310 45.455 8.04 0.00 43.42 3.32
2152 4538 4.082125 CCTTGCCTCAAGATTAGGTGTTT 58.918 43.478 8.04 0.00 43.42 2.83
2153 4539 4.082571 CCTTGCCTCAAGATTAGGTGTTTG 60.083 45.833 8.04 0.00 43.42 2.93
2154 4540 4.365514 TGCCTCAAGATTAGGTGTTTGA 57.634 40.909 0.00 0.00 36.43 2.69
2156 4542 5.324409 TGCCTCAAGATTAGGTGTTTGATT 58.676 37.500 0.00 0.00 36.43 2.57
2157 4543 5.415701 TGCCTCAAGATTAGGTGTTTGATTC 59.584 40.000 0.00 0.00 36.43 2.52
2158 4544 5.163612 GCCTCAAGATTAGGTGTTTGATTCC 60.164 44.000 0.00 0.00 36.43 3.01
2159 4545 6.183347 CCTCAAGATTAGGTGTTTGATTCCT 58.817 40.000 0.00 0.00 35.60 3.36
2160 4546 6.660949 CCTCAAGATTAGGTGTTTGATTCCTT 59.339 38.462 0.00 0.00 33.34 3.36
2162 4548 9.401058 CTCAAGATTAGGTGTTTGATTCCTTAT 57.599 33.333 0.00 0.00 33.34 1.73
2163 4549 9.753674 TCAAGATTAGGTGTTTGATTCCTTATT 57.246 29.630 0.00 0.00 33.34 1.40
2164 4550 9.793252 CAAGATTAGGTGTTTGATTCCTTATTG 57.207 33.333 0.00 0.00 33.34 1.90
2167 4553 9.956720 GATTAGGTGTTTGATTCCTTATTGATG 57.043 33.333 0.00 0.00 33.34 3.07
2171 4557 6.311200 GGTGTTTGATTCCTTATTGATGCAAC 59.689 38.462 0.00 0.00 0.00 4.17
2174 4560 6.855763 TTGATTCCTTATTGATGCAACCTT 57.144 33.333 0.00 0.00 0.00 3.50
2175 4561 6.855763 TGATTCCTTATTGATGCAACCTTT 57.144 33.333 0.00 0.00 0.00 3.11
2177 4563 7.678837 TGATTCCTTATTGATGCAACCTTTTT 58.321 30.769 0.00 0.00 0.00 1.94
2219 4605 9.983804 CTAAAAGACCGATACATCTTAAAAACC 57.016 33.333 0.00 0.00 34.01 3.27
2221 4607 7.611213 AAGACCGATACATCTTAAAAACCAG 57.389 36.000 0.00 0.00 33.35 4.00
2222 4608 6.708285 AGACCGATACATCTTAAAAACCAGT 58.292 36.000 0.00 0.00 0.00 4.00
2226 4612 7.119262 ACCGATACATCTTAAAAACCAGTCAAG 59.881 37.037 0.00 0.00 0.00 3.02
2227 4613 7.414098 CCGATACATCTTAAAAACCAGTCAAGG 60.414 40.741 0.00 0.00 0.00 3.61
2228 4614 5.453567 ACATCTTAAAAACCAGTCAAGGC 57.546 39.130 0.00 0.00 0.00 4.35
2229 4615 4.892934 ACATCTTAAAAACCAGTCAAGGCA 59.107 37.500 0.00 0.00 0.00 4.75
2230 4616 5.539955 ACATCTTAAAAACCAGTCAAGGCAT 59.460 36.000 0.00 0.00 0.00 4.40
2232 4618 4.280677 TCTTAAAAACCAGTCAAGGCATGG 59.719 41.667 0.00 0.00 40.10 3.66
2233 4619 1.341080 AAAACCAGTCAAGGCATGGG 58.659 50.000 0.00 0.00 38.48 4.00
2234 4620 0.188342 AAACCAGTCAAGGCATGGGT 59.812 50.000 0.00 0.00 38.48 4.51
2235 4621 0.188342 AACCAGTCAAGGCATGGGTT 59.812 50.000 0.00 0.00 38.48 4.11
2236 4622 0.251341 ACCAGTCAAGGCATGGGTTC 60.251 55.000 0.00 0.00 38.48 3.62
2237 4623 0.967380 CCAGTCAAGGCATGGGTTCC 60.967 60.000 0.00 0.00 0.00 3.62
2238 4624 0.038744 CAGTCAAGGCATGGGTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
2239 4625 0.038744 AGTCAAGGCATGGGTTCCTG 59.961 55.000 0.00 0.00 32.00 3.86
2241 4627 1.077265 CAAGGCATGGGTTCCTGGT 59.923 57.895 0.00 0.00 32.00 4.00
2243 4629 0.190815 AAGGCATGGGTTCCTGGTTT 59.809 50.000 0.00 0.00 32.00 3.27
2244 4630 1.080638 AGGCATGGGTTCCTGGTTTA 58.919 50.000 0.00 0.00 0.00 2.01
2246 4632 2.044353 AGGCATGGGTTCCTGGTTTATT 59.956 45.455 0.00 0.00 0.00 1.40
2247 4633 2.837591 GGCATGGGTTCCTGGTTTATTT 59.162 45.455 0.00 0.00 0.00 1.40
2248 4634 3.369366 GGCATGGGTTCCTGGTTTATTTG 60.369 47.826 0.00 0.00 0.00 2.32
2249 4635 3.369366 GCATGGGTTCCTGGTTTATTTGG 60.369 47.826 0.00 0.00 0.00 3.28
2250 4636 3.621682 TGGGTTCCTGGTTTATTTGGT 57.378 42.857 0.00 0.00 0.00 3.67
2251 4637 3.502356 TGGGTTCCTGGTTTATTTGGTC 58.498 45.455 0.00 0.00 0.00 4.02
2252 4638 2.490509 GGGTTCCTGGTTTATTTGGTCG 59.509 50.000 0.00 0.00 0.00 4.79
2254 4640 1.828979 TCCTGGTTTATTTGGTCGGC 58.171 50.000 0.00 0.00 0.00 5.54
2256 4642 1.615919 CCTGGTTTATTTGGTCGGCCT 60.616 52.381 7.97 0.00 35.27 5.19
2257 4643 1.472480 CTGGTTTATTTGGTCGGCCTG 59.528 52.381 7.97 0.00 35.27 4.85
2258 4644 1.202952 TGGTTTATTTGGTCGGCCTGT 60.203 47.619 7.97 0.00 35.27 4.00
2260 4646 1.129811 GTTTATTTGGTCGGCCTGTCG 59.870 52.381 7.97 0.00 35.27 4.35
2261 4647 0.391927 TTATTTGGTCGGCCTGTCGG 60.392 55.000 7.97 0.00 35.27 4.79
2262 4648 1.546589 TATTTGGTCGGCCTGTCGGT 61.547 55.000 7.97 0.00 35.27 4.69
2263 4649 2.798148 ATTTGGTCGGCCTGTCGGTC 62.798 60.000 7.97 0.00 35.27 4.79
2266 4652 3.371063 GTCGGCCTGTCGGTCTGA 61.371 66.667 0.00 0.00 30.74 3.27
2268 4654 2.105128 CGGCCTGTCGGTCTGATC 59.895 66.667 0.00 0.00 30.74 2.92
2270 4656 1.142748 GGCCTGTCGGTCTGATCTG 59.857 63.158 0.00 0.00 30.13 2.90
2273 4659 0.898320 CCTGTCGGTCTGATCTGGTT 59.102 55.000 0.00 0.00 0.00 3.67
2274 4660 1.276421 CCTGTCGGTCTGATCTGGTTT 59.724 52.381 0.00 0.00 0.00 3.27
2275 4661 2.289694 CCTGTCGGTCTGATCTGGTTTT 60.290 50.000 0.00 0.00 0.00 2.43
2276 4662 2.996621 CTGTCGGTCTGATCTGGTTTTC 59.003 50.000 0.00 0.00 0.00 2.29
2284 5752 5.106396 GGTCTGATCTGGTTTTCAATGACAG 60.106 44.000 0.00 0.00 0.00 3.51
2290 5758 7.502226 TGATCTGGTTTTCAATGACAGTTACTT 59.498 33.333 0.00 0.00 0.00 2.24
2291 5759 8.918202 ATCTGGTTTTCAATGACAGTTACTTA 57.082 30.769 0.00 0.00 0.00 2.24
2499 5974 4.067896 ACATCTCGCAAAGACTTCACAAT 58.932 39.130 0.00 0.00 36.65 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 228 1.893808 CACAAAGAGGCACCTGCGT 60.894 57.895 0.00 0.00 43.26 5.24
220 243 4.927782 GTCGGCCAGGTGTGCACA 62.928 66.667 17.42 17.42 0.00 4.57
392 415 2.299347 GCGAGTATCAGCAGCGAGC 61.299 63.158 0.00 0.00 46.19 5.03
393 416 0.248825 AAGCGAGTATCAGCAGCGAG 60.249 55.000 0.00 0.00 37.16 5.03
398 421 1.645034 GAAGCAAGCGAGTATCAGCA 58.355 50.000 0.00 0.00 37.16 4.41
507 542 0.673985 GACCAAAACCAGCCCTCAAC 59.326 55.000 0.00 0.00 0.00 3.18
509 544 0.178992 CAGACCAAAACCAGCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
519 554 1.110442 CCTTGCACACCAGACCAAAA 58.890 50.000 0.00 0.00 0.00 2.44
528 563 0.967380 CAATCCTCCCCTTGCACACC 60.967 60.000 0.00 0.00 0.00 4.16
533 568 1.454663 GCTCCAATCCTCCCCTTGC 60.455 63.158 0.00 0.00 0.00 4.01
579 614 3.283684 CGCCGGCAAGGAACAACA 61.284 61.111 28.98 0.00 45.00 3.33
580 615 3.249973 GACGCCGGCAAGGAACAAC 62.250 63.158 28.98 2.23 45.00 3.32
581 616 2.975799 GACGCCGGCAAGGAACAA 60.976 61.111 28.98 0.00 45.00 2.83
596 631 2.128771 TCCTTAGCTTTGCCATGGAC 57.871 50.000 18.40 7.64 0.00 4.02
759 841 3.149196 TGCAAAAGGAGGAAGATGACAC 58.851 45.455 0.00 0.00 0.00 3.67
793 875 0.590195 GATCGGCCATTCATGCAGAC 59.410 55.000 2.24 0.00 35.80 3.51
807 889 2.658593 GCGATGGACGGTGATCGG 60.659 66.667 16.56 4.00 44.45 4.18
808 890 2.658593 GGCGATGGACGGTGATCG 60.659 66.667 12.53 12.53 43.49 3.69
843 949 3.914605 TAGCCACGACAGCTGCACG 62.915 63.158 25.02 25.02 41.71 5.34
945 1054 2.837291 CTCTCCCTGGCTCGGAGG 60.837 72.222 17.02 1.51 46.01 4.30
975 1084 1.474330 TGAGTGCTTCTCGGATGCTA 58.526 50.000 11.21 0.00 45.46 3.49
988 1097 3.589881 GGCCATGGCGATGAGTGC 61.590 66.667 29.90 10.13 43.06 4.40
1020 1132 1.144936 GGTGAAGGCCGATGAGAGG 59.855 63.158 0.00 0.00 0.00 3.69
1026 1138 2.041265 AGGAGGGTGAAGGCCGAT 59.959 61.111 0.00 0.00 0.00 4.18
1033 1145 3.319198 GGCGTGGAGGAGGGTGAA 61.319 66.667 0.00 0.00 0.00 3.18
1036 1148 3.322466 CTTGGCGTGGAGGAGGGT 61.322 66.667 0.00 0.00 0.00 4.34
1570 1682 4.201990 ACGGAATTCCTAGTAGCAACGTAG 60.202 45.833 22.05 4.02 0.00 3.51
1571 1683 3.696051 ACGGAATTCCTAGTAGCAACGTA 59.304 43.478 22.05 0.00 0.00 3.57
1572 1684 2.494870 ACGGAATTCCTAGTAGCAACGT 59.505 45.455 22.05 7.94 0.00 3.99
1573 1685 3.160777 ACGGAATTCCTAGTAGCAACG 57.839 47.619 22.05 7.32 0.00 4.10
1574 1686 7.549615 AAATTACGGAATTCCTAGTAGCAAC 57.450 36.000 22.05 0.00 34.01 4.17
1705 1826 3.825014 GGTAGGCATCGTAGTGGAGATAA 59.175 47.826 0.00 0.00 0.00 1.75
1740 1861 7.702386 TCAAAATTCTGAAACGAAACATCAGA 58.298 30.769 0.82 0.82 45.73 3.27
1809 1948 1.138859 CATCGACCAGGCCATGTCTAA 59.861 52.381 18.94 9.93 0.00 2.10
1880 2020 3.052036 GCAACGAATTGTTCTGCAACAT 58.948 40.909 0.00 0.00 42.28 2.71
1888 2028 1.708680 GTTGAGCGCAACGAATTGTTC 59.291 47.619 17.60 0.00 44.27 3.18
1898 2076 0.179043 TGGTTACAGGTTGAGCGCAA 60.179 50.000 11.47 0.00 0.00 4.85
1910 2088 6.981559 GCTTGGTTTTTCAAACTATGGTTACA 59.018 34.615 0.00 0.00 34.90 2.41
1916 2094 3.987220 CCGGCTTGGTTTTTCAAACTATG 59.013 43.478 0.00 0.00 0.00 2.23
1919 2097 1.472552 GCCGGCTTGGTTTTTCAAACT 60.473 47.619 22.15 0.00 41.21 2.66
1920 2098 0.934496 GCCGGCTTGGTTTTTCAAAC 59.066 50.000 22.15 0.00 41.21 2.93
1921 2099 0.537188 TGCCGGCTTGGTTTTTCAAA 59.463 45.000 29.70 0.00 41.21 2.69
1922 2100 0.537188 TTGCCGGCTTGGTTTTTCAA 59.463 45.000 29.70 6.16 41.21 2.69
1924 2102 0.104120 AGTTGCCGGCTTGGTTTTTC 59.896 50.000 29.70 7.06 41.21 2.29
1925 2103 0.179086 CAGTTGCCGGCTTGGTTTTT 60.179 50.000 29.70 1.33 41.21 1.94
1926 2104 1.040339 TCAGTTGCCGGCTTGGTTTT 61.040 50.000 29.70 3.06 41.21 2.43
1927 2105 1.040339 TTCAGTTGCCGGCTTGGTTT 61.040 50.000 29.70 4.23 41.21 3.27
1928 2106 1.454847 TTCAGTTGCCGGCTTGGTT 60.455 52.632 29.70 5.80 41.21 3.67
1929 2107 2.193536 GTTCAGTTGCCGGCTTGGT 61.194 57.895 29.70 6.67 41.21 3.67
1930 2108 1.898574 AGTTCAGTTGCCGGCTTGG 60.899 57.895 29.70 14.55 42.50 3.61
1931 2109 1.283793 CAGTTCAGTTGCCGGCTTG 59.716 57.895 29.70 22.09 0.00 4.01
1933 2111 2.281761 CCAGTTCAGTTGCCGGCT 60.282 61.111 29.70 3.84 0.00 5.52
1934 2112 2.281484 TCCAGTTCAGTTGCCGGC 60.281 61.111 22.73 22.73 0.00 6.13
1935 2113 0.671781 CTCTCCAGTTCAGTTGCCGG 60.672 60.000 0.00 0.00 0.00 6.13
1936 2114 0.671781 CCTCTCCAGTTCAGTTGCCG 60.672 60.000 0.00 0.00 0.00 5.69
1937 2115 0.957888 GCCTCTCCAGTTCAGTTGCC 60.958 60.000 0.00 0.00 0.00 4.52
1938 2116 0.036022 AGCCTCTCCAGTTCAGTTGC 59.964 55.000 0.00 0.00 0.00 4.17
1939 2117 1.071385 ACAGCCTCTCCAGTTCAGTTG 59.929 52.381 0.00 0.00 0.00 3.16
1941 2119 0.972883 GACAGCCTCTCCAGTTCAGT 59.027 55.000 0.00 0.00 0.00 3.41
1942 2120 0.972134 TGACAGCCTCTCCAGTTCAG 59.028 55.000 0.00 0.00 0.00 3.02
1943 2121 0.972134 CTGACAGCCTCTCCAGTTCA 59.028 55.000 0.00 0.00 0.00 3.18
1944 2122 0.972883 ACTGACAGCCTCTCCAGTTC 59.027 55.000 1.25 0.00 36.57 3.01
1945 2123 1.428869 AACTGACAGCCTCTCCAGTT 58.571 50.000 1.25 0.00 42.85 3.16
1946 2124 0.972883 GAACTGACAGCCTCTCCAGT 59.027 55.000 1.25 0.00 41.14 4.00
1947 2125 0.972134 TGAACTGACAGCCTCTCCAG 59.028 55.000 1.25 0.00 0.00 3.86
1948 2126 0.972134 CTGAACTGACAGCCTCTCCA 59.028 55.000 1.25 0.00 0.00 3.86
1949 2127 0.248843 CCTGAACTGACAGCCTCTCC 59.751 60.000 1.25 0.00 36.67 3.71
1950 2128 0.972883 ACCTGAACTGACAGCCTCTC 59.027 55.000 1.25 0.00 36.67 3.20
1951 2129 1.428869 AACCTGAACTGACAGCCTCT 58.571 50.000 1.25 0.00 36.67 3.69
1952 2130 2.262423 AAACCTGAACTGACAGCCTC 57.738 50.000 1.25 0.09 36.67 4.70
1963 2677 7.067615 TGCAAATGTGACTAGTAAAAACCTGAA 59.932 33.333 0.00 0.00 0.00 3.02
1965 2679 6.734137 TGCAAATGTGACTAGTAAAAACCTG 58.266 36.000 0.00 0.00 0.00 4.00
1966 2680 6.952773 TGCAAATGTGACTAGTAAAAACCT 57.047 33.333 0.00 0.00 0.00 3.50
1968 2682 7.979115 TGTTGCAAATGTGACTAGTAAAAAC 57.021 32.000 0.00 0.00 0.00 2.43
1970 2684 9.891828 CTATTGTTGCAAATGTGACTAGTAAAA 57.108 29.630 0.00 0.00 0.00 1.52
1973 2687 9.098355 GATCTATTGTTGCAAATGTGACTAGTA 57.902 33.333 0.00 0.00 0.00 1.82
1975 2689 7.066163 TGGATCTATTGTTGCAAATGTGACTAG 59.934 37.037 0.00 0.00 0.00 2.57
1976 2690 6.883756 TGGATCTATTGTTGCAAATGTGACTA 59.116 34.615 0.00 0.00 0.00 2.59
1977 2691 5.711506 TGGATCTATTGTTGCAAATGTGACT 59.288 36.000 0.00 0.00 0.00 3.41
1978 2692 5.953183 TGGATCTATTGTTGCAAATGTGAC 58.047 37.500 0.00 0.00 0.00 3.67
1979 2693 6.587206 TTGGATCTATTGTTGCAAATGTGA 57.413 33.333 0.00 0.00 0.00 3.58
2049 2833 9.640963 GGTGTACATCCAGTATTATCTGTATTC 57.359 37.037 0.00 0.00 34.67 1.75
2050 2834 9.154632 TGGTGTACATCCAGTATTATCTGTATT 57.845 33.333 3.07 0.00 34.67 1.89
2051 2835 8.721133 TGGTGTACATCCAGTATTATCTGTAT 57.279 34.615 3.07 0.00 34.67 2.29
2052 2836 8.178313 CTGGTGTACATCCAGTATTATCTGTA 57.822 38.462 24.78 0.00 45.09 2.74
2053 2837 7.055667 CTGGTGTACATCCAGTATTATCTGT 57.944 40.000 24.78 0.00 45.09 3.41
2081 2865 8.599792 ACTGGGCTAGTAACACTTTTAGATTTA 58.400 33.333 0.00 0.00 38.04 1.40
2082 2866 7.459234 ACTGGGCTAGTAACACTTTTAGATTT 58.541 34.615 0.00 0.00 38.04 2.17
2083 2867 7.017319 ACTGGGCTAGTAACACTTTTAGATT 57.983 36.000 0.00 0.00 38.04 2.40
2085 2869 6.228258 CAACTGGGCTAGTAACACTTTTAGA 58.772 40.000 3.17 0.00 39.18 2.10
2086 2870 5.411669 CCAACTGGGCTAGTAACACTTTTAG 59.588 44.000 3.17 0.00 39.18 1.85
2087 2871 5.163174 ACCAACTGGGCTAGTAACACTTTTA 60.163 40.000 3.17 0.00 39.18 1.52
2088 2872 4.142038 CCAACTGGGCTAGTAACACTTTT 58.858 43.478 3.17 0.00 39.18 2.27
2089 2873 3.137728 ACCAACTGGGCTAGTAACACTTT 59.862 43.478 3.17 0.00 39.18 2.66
2090 2874 2.709397 ACCAACTGGGCTAGTAACACTT 59.291 45.455 3.17 0.00 39.18 3.16
2092 2876 2.853235 ACCAACTGGGCTAGTAACAC 57.147 50.000 3.17 0.00 39.18 3.32
2094 2878 4.548451 AGTAACCAACTGGGCTAGTAAC 57.452 45.455 3.17 0.00 39.18 2.50
2097 2881 3.118371 GCATAGTAACCAACTGGGCTAGT 60.118 47.826 0.00 0.00 42.89 2.57
2098 2882 3.467803 GCATAGTAACCAACTGGGCTAG 58.532 50.000 0.00 0.00 42.05 3.42
2099 2883 2.171870 GGCATAGTAACCAACTGGGCTA 59.828 50.000 0.00 0.76 42.05 3.93
2100 2884 1.064685 GGCATAGTAACCAACTGGGCT 60.065 52.381 0.00 0.00 42.05 5.19
2101 2885 1.064685 AGGCATAGTAACCAACTGGGC 60.065 52.381 0.00 0.00 42.05 5.36
2102 2886 3.366052 AAGGCATAGTAACCAACTGGG 57.634 47.619 0.00 0.00 39.39 4.45
2103 2887 5.708230 TGTTAAAGGCATAGTAACCAACTGG 59.292 40.000 0.00 0.00 39.39 4.00
2104 2888 6.811253 TGTTAAAGGCATAGTAACCAACTG 57.189 37.500 3.32 0.00 39.39 3.16
2105 2889 6.127730 GCATGTTAAAGGCATAGTAACCAACT 60.128 38.462 0.00 0.00 42.62 3.16
2106 2890 6.033966 GCATGTTAAAGGCATAGTAACCAAC 58.966 40.000 0.00 0.00 0.00 3.77
2109 2893 4.887655 AGGCATGTTAAAGGCATAGTAACC 59.112 41.667 0.00 0.00 0.00 2.85
2110 2894 6.265577 CAAGGCATGTTAAAGGCATAGTAAC 58.734 40.000 0.00 0.00 0.00 2.50
2112 2896 4.338118 GCAAGGCATGTTAAAGGCATAGTA 59.662 41.667 0.00 0.00 0.00 1.82
2114 2898 3.491447 GGCAAGGCATGTTAAAGGCATAG 60.491 47.826 0.00 0.00 0.00 2.23
2115 2899 2.430332 GGCAAGGCATGTTAAAGGCATA 59.570 45.455 0.00 0.00 0.00 3.14
2116 2900 1.207811 GGCAAGGCATGTTAAAGGCAT 59.792 47.619 0.00 0.00 0.00 4.40
2117 2901 0.607620 GGCAAGGCATGTTAAAGGCA 59.392 50.000 0.00 0.00 0.00 4.75
2118 2902 0.897621 AGGCAAGGCATGTTAAAGGC 59.102 50.000 0.00 0.00 0.00 4.35
2119 2903 2.170166 TGAGGCAAGGCATGTTAAAGG 58.830 47.619 0.00 0.00 0.00 3.11
2122 4508 3.153369 TCTTGAGGCAAGGCATGTTAA 57.847 42.857 7.27 0.00 41.33 2.01
2129 4515 2.019984 CACCTAATCTTGAGGCAAGGC 58.980 52.381 7.27 0.00 41.33 4.35
2135 4521 6.183347 AGGAATCAAACACCTAATCTTGAGG 58.817 40.000 0.00 0.00 40.22 3.86
2136 4522 7.693969 AAGGAATCAAACACCTAATCTTGAG 57.306 36.000 0.00 0.00 31.70 3.02
2137 4523 9.753674 AATAAGGAATCAAACACCTAATCTTGA 57.246 29.630 0.00 0.00 33.34 3.02
2138 4524 9.793252 CAATAAGGAATCAAACACCTAATCTTG 57.207 33.333 0.00 0.00 33.34 3.02
2139 4525 9.753674 TCAATAAGGAATCAAACACCTAATCTT 57.246 29.630 0.00 0.00 33.34 2.40
2141 4527 9.956720 CATCAATAAGGAATCAAACACCTAATC 57.043 33.333 0.00 0.00 33.34 1.75
2142 4528 8.416329 GCATCAATAAGGAATCAAACACCTAAT 58.584 33.333 0.00 0.00 33.34 1.73
2143 4529 7.395772 TGCATCAATAAGGAATCAAACACCTAA 59.604 33.333 0.00 0.00 33.34 2.69
2145 4531 5.716228 TGCATCAATAAGGAATCAAACACCT 59.284 36.000 0.00 0.00 35.36 4.00
2146 4532 5.964758 TGCATCAATAAGGAATCAAACACC 58.035 37.500 0.00 0.00 0.00 4.16
2148 4534 6.211184 AGGTTGCATCAATAAGGAATCAAACA 59.789 34.615 0.00 0.00 0.00 2.83
2149 4535 6.633856 AGGTTGCATCAATAAGGAATCAAAC 58.366 36.000 0.00 0.00 0.00 2.93
2150 4536 6.855763 AGGTTGCATCAATAAGGAATCAAA 57.144 33.333 0.00 0.00 0.00 2.69
2151 4537 6.855763 AAGGTTGCATCAATAAGGAATCAA 57.144 33.333 0.00 0.00 0.00 2.57
2152 4538 6.855763 AAAGGTTGCATCAATAAGGAATCA 57.144 33.333 0.00 0.00 0.00 2.57
2193 4579 9.983804 GGTTTTTAAGATGTATCGGTCTTTTAG 57.016 33.333 0.00 0.00 36.23 1.85
2199 4585 6.592607 TGACTGGTTTTTAAGATGTATCGGTC 59.407 38.462 0.00 0.00 0.00 4.79
2200 4586 6.469410 TGACTGGTTTTTAAGATGTATCGGT 58.531 36.000 0.00 0.00 0.00 4.69
2201 4587 6.978343 TGACTGGTTTTTAAGATGTATCGG 57.022 37.500 0.00 0.00 0.00 4.18
2202 4588 7.464358 CCTTGACTGGTTTTTAAGATGTATCG 58.536 38.462 0.00 0.00 0.00 2.92
2203 4589 7.094377 TGCCTTGACTGGTTTTTAAGATGTATC 60.094 37.037 0.00 0.00 0.00 2.24
2204 4590 6.719370 TGCCTTGACTGGTTTTTAAGATGTAT 59.281 34.615 0.00 0.00 0.00 2.29
2205 4591 6.065374 TGCCTTGACTGGTTTTTAAGATGTA 58.935 36.000 0.00 0.00 0.00 2.29
2207 4593 5.452078 TGCCTTGACTGGTTTTTAAGATG 57.548 39.130 0.00 0.00 0.00 2.90
2209 4595 4.280677 CCATGCCTTGACTGGTTTTTAAGA 59.719 41.667 0.00 0.00 0.00 2.10
2210 4596 4.559153 CCATGCCTTGACTGGTTTTTAAG 58.441 43.478 0.00 0.00 0.00 1.85
2211 4597 3.323403 CCCATGCCTTGACTGGTTTTTAA 59.677 43.478 0.00 0.00 0.00 1.52
2212 4598 2.896685 CCCATGCCTTGACTGGTTTTTA 59.103 45.455 0.00 0.00 0.00 1.52
2213 4599 1.693606 CCCATGCCTTGACTGGTTTTT 59.306 47.619 0.00 0.00 0.00 1.94
2215 4601 0.188342 ACCCATGCCTTGACTGGTTT 59.812 50.000 0.00 0.00 0.00 3.27
2216 4602 0.188342 AACCCATGCCTTGACTGGTT 59.812 50.000 0.00 0.00 0.00 3.67
2219 4605 0.038744 AGGAACCCATGCCTTGACTG 59.961 55.000 0.00 0.00 0.00 3.51
2221 4607 0.967380 CCAGGAACCCATGCCTTGAC 60.967 60.000 0.00 0.00 30.41 3.18
2222 4608 1.383799 CCAGGAACCCATGCCTTGA 59.616 57.895 0.00 0.00 30.41 3.02
2226 4612 2.159179 ATAAACCAGGAACCCATGCC 57.841 50.000 0.00 0.00 0.00 4.40
2227 4613 3.369366 CCAAATAAACCAGGAACCCATGC 60.369 47.826 0.00 0.00 0.00 4.06
2228 4614 3.837731 ACCAAATAAACCAGGAACCCATG 59.162 43.478 0.00 0.00 0.00 3.66
2229 4615 4.093743 GACCAAATAAACCAGGAACCCAT 58.906 43.478 0.00 0.00 0.00 4.00
2230 4616 3.502356 GACCAAATAAACCAGGAACCCA 58.498 45.455 0.00 0.00 0.00 4.51
2232 4618 2.490509 CCGACCAAATAAACCAGGAACC 59.509 50.000 0.00 0.00 0.00 3.62
2233 4619 2.094906 GCCGACCAAATAAACCAGGAAC 60.095 50.000 0.00 0.00 0.00 3.62
2234 4620 2.164338 GCCGACCAAATAAACCAGGAA 58.836 47.619 0.00 0.00 0.00 3.36
2235 4621 1.614850 GGCCGACCAAATAAACCAGGA 60.615 52.381 0.00 0.00 35.26 3.86
2236 4622 0.815095 GGCCGACCAAATAAACCAGG 59.185 55.000 0.00 0.00 35.26 4.45
2237 4623 1.472480 CAGGCCGACCAAATAAACCAG 59.528 52.381 0.00 0.00 39.06 4.00
2238 4624 1.202952 ACAGGCCGACCAAATAAACCA 60.203 47.619 0.00 0.00 39.06 3.67
2239 4625 1.471287 GACAGGCCGACCAAATAAACC 59.529 52.381 0.00 0.00 39.06 3.27
2241 4627 1.444836 CGACAGGCCGACCAAATAAA 58.555 50.000 0.00 0.00 39.06 1.40
2243 4629 1.219664 CCGACAGGCCGACCAAATA 59.780 57.895 0.00 0.00 39.06 1.40
2244 4630 2.046314 CCGACAGGCCGACCAAAT 60.046 61.111 0.00 0.00 39.06 2.32
2246 4632 3.998672 GACCGACAGGCCGACCAA 61.999 66.667 0.00 0.00 42.76 3.67
2247 4633 4.988716 AGACCGACAGGCCGACCA 62.989 66.667 0.00 0.00 42.76 4.02
2248 4634 4.436998 CAGACCGACAGGCCGACC 62.437 72.222 0.00 0.00 42.76 4.79
2249 4635 2.615262 GATCAGACCGACAGGCCGAC 62.615 65.000 0.00 0.00 42.76 4.79
2250 4636 2.362503 ATCAGACCGACAGGCCGA 60.363 61.111 0.00 0.00 42.76 5.54
2251 4637 2.105128 GATCAGACCGACAGGCCG 59.895 66.667 0.00 0.00 42.76 6.13
2252 4638 1.142748 CAGATCAGACCGACAGGCC 59.857 63.158 0.00 0.00 42.76 5.19
2254 4640 0.898320 AACCAGATCAGACCGACAGG 59.102 55.000 0.00 0.00 45.13 4.00
2256 4642 2.367241 TGAAAACCAGATCAGACCGACA 59.633 45.455 0.00 0.00 0.00 4.35
2257 4643 3.040147 TGAAAACCAGATCAGACCGAC 57.960 47.619 0.00 0.00 0.00 4.79
2258 4644 3.762407 TTGAAAACCAGATCAGACCGA 57.238 42.857 0.00 0.00 0.00 4.69
2260 4646 4.761739 TGTCATTGAAAACCAGATCAGACC 59.238 41.667 0.00 0.00 0.00 3.85
2261 4647 5.471456 ACTGTCATTGAAAACCAGATCAGAC 59.529 40.000 8.52 0.00 0.00 3.51
2262 4648 5.624159 ACTGTCATTGAAAACCAGATCAGA 58.376 37.500 8.52 0.00 0.00 3.27
2263 4649 5.954296 ACTGTCATTGAAAACCAGATCAG 57.046 39.130 8.52 2.37 0.00 2.90
2266 4652 7.823745 AAGTAACTGTCATTGAAAACCAGAT 57.176 32.000 8.52 0.98 0.00 2.90
2268 4654 9.965824 AAATAAGTAACTGTCATTGAAAACCAG 57.034 29.630 1.59 1.59 0.00 4.00
2270 4656 9.959749 TGAAATAAGTAACTGTCATTGAAAACC 57.040 29.630 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.