Multiple sequence alignment - TraesCS1B01G436200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G436200 chr1B 100.000 2272 0 0 1 2272 659718244 659715973 0.000000e+00 4196
1 TraesCS1B01G436200 chr1B 89.324 1302 133 5 1 1300 545433179 545434476 0.000000e+00 1629
2 TraesCS1B01G436200 chr1B 90.780 846 78 0 1 846 584318558 584319403 0.000000e+00 1131
3 TraesCS1B01G436200 chr1B 92.686 711 50 2 594 1303 624872815 624873524 0.000000e+00 1024
4 TraesCS1B01G436200 chr1B 93.590 234 14 1 1070 1302 584319405 584319638 4.640000e-92 348
5 TraesCS1B01G436200 chr3B 95.465 1301 58 1 1 1300 773031741 773030441 0.000000e+00 2074
6 TraesCS1B01G436200 chr4B 92.068 1286 97 5 1 1282 278429766 278428482 0.000000e+00 1805
7 TraesCS1B01G436200 chr7B 91.328 1303 112 1 1 1302 11598178 11599480 0.000000e+00 1779
8 TraesCS1B01G436200 chr3A 90.867 1303 116 3 1 1301 508528754 508530055 0.000000e+00 1744
9 TraesCS1B01G436200 chr3A 90.936 342 25 2 962 1302 25004872 25005208 2.660000e-124 455
10 TraesCS1B01G436200 chr1A 90.337 1304 122 4 1 1302 108920278 108918977 0.000000e+00 1707
11 TraesCS1B01G436200 chr7A 74.094 1270 297 30 51 1302 675054708 675053453 5.640000e-136 494
12 TraesCS1B01G436200 chr6B 72.777 1271 306 37 58 1307 471152720 471153971 5.880000e-106 394
13 TraesCS1B01G436200 chr1D 86.636 217 13 6 1537 1747 474374093 474373887 2.270000e-55 226
14 TraesCS1B01G436200 chr1D 84.426 244 20 6 1980 2223 474373496 474373271 8.170000e-55 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G436200 chr1B 659715973 659718244 2271 True 4196.0 4196 100.000 1 2272 1 chr1B.!!$R1 2271
1 TraesCS1B01G436200 chr1B 545433179 545434476 1297 False 1629.0 1629 89.324 1 1300 1 chr1B.!!$F1 1299
2 TraesCS1B01G436200 chr1B 624872815 624873524 709 False 1024.0 1024 92.686 594 1303 1 chr1B.!!$F2 709
3 TraesCS1B01G436200 chr1B 584318558 584319638 1080 False 739.5 1131 92.185 1 1302 2 chr1B.!!$F3 1301
4 TraesCS1B01G436200 chr3B 773030441 773031741 1300 True 2074.0 2074 95.465 1 1300 1 chr3B.!!$R1 1299
5 TraesCS1B01G436200 chr4B 278428482 278429766 1284 True 1805.0 1805 92.068 1 1282 1 chr4B.!!$R1 1281
6 TraesCS1B01G436200 chr7B 11598178 11599480 1302 False 1779.0 1779 91.328 1 1302 1 chr7B.!!$F1 1301
7 TraesCS1B01G436200 chr3A 508528754 508530055 1301 False 1744.0 1744 90.867 1 1301 1 chr3A.!!$F2 1300
8 TraesCS1B01G436200 chr1A 108918977 108920278 1301 True 1707.0 1707 90.337 1 1302 1 chr1A.!!$R1 1301
9 TraesCS1B01G436200 chr7A 675053453 675054708 1255 True 494.0 494 74.094 51 1302 1 chr7A.!!$R1 1251
10 TraesCS1B01G436200 chr6B 471152720 471153971 1251 False 394.0 394 72.777 58 1307 1 chr6B.!!$F1 1249
11 TraesCS1B01G436200 chr1D 474373271 474374093 822 True 225.0 226 85.531 1537 2223 2 chr1D.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.044092 TCCCACTCCCAGGATAGCAA 59.956 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1449 0.035439 CCGCCCCACAATAGACACTT 60.035 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.044092 TCCCACTCCCAGGATAGCAA 59.956 55.000 0.00 0.00 0.00 3.91
45 46 1.408822 CCCACTCCCAGGATAGCAAAC 60.409 57.143 0.00 0.00 0.00 2.93
90 91 3.705043 ATCGATACGTACAACTGGACC 57.295 47.619 0.00 0.00 0.00 4.46
128 129 3.726557 TCAAGAATCATTCCAGCCACT 57.273 42.857 0.00 0.00 0.00 4.00
331 332 2.119495 AGGTATGGAGTAAGCTGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
423 424 3.243569 GCACTCTGCTATATCGACACCTT 60.244 47.826 0.00 0.00 40.96 3.50
496 497 1.342074 TGCTCTACTCAGGTGCAACT 58.658 50.000 0.00 0.00 36.74 3.16
499 500 2.231478 GCTCTACTCAGGTGCAACTACA 59.769 50.000 2.54 0.00 36.74 2.74
543 544 3.473367 CGAGCAGTTGTTTGATTTCGAG 58.527 45.455 0.00 0.00 0.00 4.04
582 583 2.242043 CTCAACTGGGCAAAGGATGTT 58.758 47.619 0.00 0.00 0.00 2.71
583 584 2.229784 CTCAACTGGGCAAAGGATGTTC 59.770 50.000 0.00 0.00 0.00 3.18
630 631 0.177604 ACCGGTCGATACTCGTCTCT 59.822 55.000 0.00 0.00 41.35 3.10
732 733 1.103803 CAAGGGAGACACTAGCGCTA 58.896 55.000 17.75 17.75 0.00 4.26
840 841 2.224042 CGCAGCCATACACTTAGATGGA 60.224 50.000 5.09 0.00 44.72 3.41
1007 1008 5.525378 GCTTCTCAAACGTAATCATGGAGAT 59.475 40.000 0.00 0.00 39.09 2.75
1317 1323 1.792006 AAAACTAGTGAACTCCGGCG 58.208 50.000 0.00 0.00 0.00 6.46
1318 1324 0.677842 AAACTAGTGAACTCCGGCGT 59.322 50.000 6.01 0.00 0.00 5.68
1319 1325 1.538047 AACTAGTGAACTCCGGCGTA 58.462 50.000 6.01 0.00 0.00 4.42
1320 1326 1.538047 ACTAGTGAACTCCGGCGTAA 58.462 50.000 6.01 0.00 0.00 3.18
1321 1327 2.097825 ACTAGTGAACTCCGGCGTAAT 58.902 47.619 6.01 0.00 0.00 1.89
1322 1328 2.494870 ACTAGTGAACTCCGGCGTAATT 59.505 45.455 6.01 0.00 0.00 1.40
1323 1329 1.722011 AGTGAACTCCGGCGTAATTG 58.278 50.000 6.01 0.00 0.00 2.32
1324 1330 1.001633 AGTGAACTCCGGCGTAATTGT 59.998 47.619 6.01 0.00 0.00 2.71
1325 1331 1.127951 GTGAACTCCGGCGTAATTGTG 59.872 52.381 6.01 0.00 0.00 3.33
1326 1332 0.096454 GAACTCCGGCGTAATTGTGC 59.904 55.000 6.01 0.00 0.00 4.57
1332 1338 3.795342 GCGTAATTGTGCCGCCGT 61.795 61.111 0.00 0.00 41.50 5.68
1333 1339 2.454464 GCGTAATTGTGCCGCCGTA 61.454 57.895 0.00 0.00 41.50 4.02
1334 1340 1.968703 GCGTAATTGTGCCGCCGTAA 61.969 55.000 0.00 0.00 41.50 3.18
1335 1341 0.443088 CGTAATTGTGCCGCCGTAAA 59.557 50.000 0.00 0.00 0.00 2.01
1336 1342 1.062880 CGTAATTGTGCCGCCGTAAAT 59.937 47.619 0.00 0.00 0.00 1.40
1337 1343 2.446282 GTAATTGTGCCGCCGTAAATG 58.554 47.619 0.00 0.00 0.00 2.32
1338 1344 0.457681 AATTGTGCCGCCGTAAATGC 60.458 50.000 0.00 0.00 0.00 3.56
1339 1345 2.278182 ATTGTGCCGCCGTAAATGCC 62.278 55.000 0.00 0.00 0.00 4.40
1340 1346 3.131478 GTGCCGCCGTAAATGCCT 61.131 61.111 0.00 0.00 0.00 4.75
1341 1347 2.360600 TGCCGCCGTAAATGCCTT 60.361 55.556 0.00 0.00 0.00 4.35
1342 1348 2.403378 TGCCGCCGTAAATGCCTTC 61.403 57.895 0.00 0.00 0.00 3.46
1343 1349 2.403378 GCCGCCGTAAATGCCTTCA 61.403 57.895 0.00 0.00 0.00 3.02
1344 1350 1.928706 GCCGCCGTAAATGCCTTCAA 61.929 55.000 0.00 0.00 0.00 2.69
1345 1351 0.098728 CCGCCGTAAATGCCTTCAAG 59.901 55.000 0.00 0.00 0.00 3.02
1346 1352 0.802494 CGCCGTAAATGCCTTCAAGT 59.198 50.000 0.00 0.00 0.00 3.16
1347 1353 1.202031 CGCCGTAAATGCCTTCAAGTC 60.202 52.381 0.00 0.00 0.00 3.01
1348 1354 2.084546 GCCGTAAATGCCTTCAAGTCT 58.915 47.619 0.00 0.00 0.00 3.24
1349 1355 2.488153 GCCGTAAATGCCTTCAAGTCTT 59.512 45.455 0.00 0.00 0.00 3.01
1350 1356 3.670627 GCCGTAAATGCCTTCAAGTCTTG 60.671 47.826 6.21 6.21 0.00 3.02
1351 1357 3.502211 CCGTAAATGCCTTCAAGTCTTGT 59.498 43.478 12.30 0.00 0.00 3.16
1352 1358 4.693566 CCGTAAATGCCTTCAAGTCTTGTA 59.306 41.667 12.30 2.10 0.00 2.41
1353 1359 5.180492 CCGTAAATGCCTTCAAGTCTTGTAA 59.820 40.000 12.30 5.17 0.00 2.41
1354 1360 6.307155 CGTAAATGCCTTCAAGTCTTGTAAG 58.693 40.000 12.30 13.06 0.00 2.34
1355 1361 6.147164 CGTAAATGCCTTCAAGTCTTGTAAGA 59.853 38.462 18.59 7.16 0.00 2.10
1356 1362 6.959639 AAATGCCTTCAAGTCTTGTAAGAA 57.040 33.333 18.59 11.19 36.68 2.52
1357 1363 6.566197 AATGCCTTCAAGTCTTGTAAGAAG 57.434 37.500 18.59 12.59 36.68 2.85
1360 1366 4.389374 CCTTCAAGTCTTGTAAGAAGGCA 58.611 43.478 14.56 0.00 46.00 4.75
1361 1367 4.821805 CCTTCAAGTCTTGTAAGAAGGCAA 59.178 41.667 14.56 0.00 46.00 4.52
1362 1368 5.049129 CCTTCAAGTCTTGTAAGAAGGCAAG 60.049 44.000 14.56 7.52 46.00 4.01
1363 1369 4.389374 TCAAGTCTTGTAAGAAGGCAAGG 58.611 43.478 12.30 0.00 41.56 3.61
1364 1370 4.102524 TCAAGTCTTGTAAGAAGGCAAGGA 59.897 41.667 12.30 0.00 41.56 3.36
1365 1371 4.706842 AGTCTTGTAAGAAGGCAAGGAA 57.293 40.909 0.00 0.00 41.56 3.36
1366 1372 4.390264 AGTCTTGTAAGAAGGCAAGGAAC 58.610 43.478 0.00 0.00 41.56 3.62
1367 1373 4.134563 GTCTTGTAAGAAGGCAAGGAACA 58.865 43.478 0.00 0.00 41.56 3.18
1368 1374 4.578928 GTCTTGTAAGAAGGCAAGGAACAA 59.421 41.667 0.00 0.00 41.56 2.83
1369 1375 4.578928 TCTTGTAAGAAGGCAAGGAACAAC 59.421 41.667 0.00 0.00 41.56 3.32
1370 1376 4.164843 TGTAAGAAGGCAAGGAACAACT 57.835 40.909 0.00 0.00 0.00 3.16
1371 1377 4.532834 TGTAAGAAGGCAAGGAACAACTT 58.467 39.130 0.00 0.00 0.00 2.66
1372 1378 4.953579 TGTAAGAAGGCAAGGAACAACTTT 59.046 37.500 0.00 0.00 0.00 2.66
1373 1379 5.420739 TGTAAGAAGGCAAGGAACAACTTTT 59.579 36.000 0.00 0.00 0.00 2.27
1374 1380 4.391405 AGAAGGCAAGGAACAACTTTTG 57.609 40.909 0.00 0.00 0.00 2.44
1375 1381 4.023291 AGAAGGCAAGGAACAACTTTTGA 58.977 39.130 0.00 0.00 0.00 2.69
1376 1382 4.651045 AGAAGGCAAGGAACAACTTTTGAT 59.349 37.500 0.00 0.00 0.00 2.57
1377 1383 4.326504 AGGCAAGGAACAACTTTTGATG 57.673 40.909 0.00 0.00 0.00 3.07
1378 1384 3.706086 AGGCAAGGAACAACTTTTGATGT 59.294 39.130 0.00 0.00 37.01 3.06
1379 1385 4.051237 GGCAAGGAACAACTTTTGATGTC 58.949 43.478 0.00 0.00 34.22 3.06
1380 1386 4.051237 GCAAGGAACAACTTTTGATGTCC 58.949 43.478 0.00 0.00 34.22 4.02
1381 1387 4.620982 CAAGGAACAACTTTTGATGTCCC 58.379 43.478 0.00 0.00 34.22 4.46
1382 1388 2.884639 AGGAACAACTTTTGATGTCCCG 59.115 45.455 0.00 0.00 34.87 5.14
1383 1389 2.607038 GGAACAACTTTTGATGTCCCGC 60.607 50.000 0.00 0.00 34.22 6.13
1384 1390 1.981256 ACAACTTTTGATGTCCCGCT 58.019 45.000 0.00 0.00 28.91 5.52
1385 1391 2.306847 ACAACTTTTGATGTCCCGCTT 58.693 42.857 0.00 0.00 28.91 4.68
1386 1392 2.293399 ACAACTTTTGATGTCCCGCTTC 59.707 45.455 0.00 0.00 28.91 3.86
1387 1393 2.270352 ACTTTTGATGTCCCGCTTCA 57.730 45.000 0.00 0.00 0.00 3.02
1388 1394 2.154462 ACTTTTGATGTCCCGCTTCAG 58.846 47.619 0.00 0.00 33.60 3.02
1389 1395 0.881118 TTTTGATGTCCCGCTTCAGC 59.119 50.000 0.00 0.00 33.60 4.26
1390 1396 0.036732 TTTGATGTCCCGCTTCAGCT 59.963 50.000 0.00 0.00 39.32 4.24
1391 1397 0.036732 TTGATGTCCCGCTTCAGCTT 59.963 50.000 0.00 0.00 39.32 3.74
1392 1398 0.674581 TGATGTCCCGCTTCAGCTTG 60.675 55.000 0.00 0.00 39.32 4.01
1393 1399 1.986575 GATGTCCCGCTTCAGCTTGC 61.987 60.000 0.00 0.00 39.32 4.01
1394 1400 3.435186 GTCCCGCTTCAGCTTGCC 61.435 66.667 0.00 0.00 39.32 4.52
1395 1401 3.952508 TCCCGCTTCAGCTTGCCA 61.953 61.111 0.00 0.00 39.32 4.92
1396 1402 2.753043 CCCGCTTCAGCTTGCCAT 60.753 61.111 0.00 0.00 39.32 4.40
1397 1403 2.768492 CCCGCTTCAGCTTGCCATC 61.768 63.158 0.00 0.00 39.32 3.51
1398 1404 2.042259 CCGCTTCAGCTTGCCATCA 61.042 57.895 0.00 0.00 39.32 3.07
1399 1405 1.381928 CCGCTTCAGCTTGCCATCAT 61.382 55.000 0.00 0.00 39.32 2.45
1400 1406 0.248498 CGCTTCAGCTTGCCATCATG 60.248 55.000 0.00 0.00 39.32 3.07
1401 1407 0.815734 GCTTCAGCTTGCCATCATGT 59.184 50.000 0.00 0.00 38.21 3.21
1402 1408 2.019249 GCTTCAGCTTGCCATCATGTA 58.981 47.619 0.00 0.00 38.21 2.29
1403 1409 2.424601 GCTTCAGCTTGCCATCATGTAA 59.575 45.455 0.00 0.00 38.21 2.41
1404 1410 3.067742 GCTTCAGCTTGCCATCATGTAAT 59.932 43.478 0.00 0.00 38.21 1.89
1405 1411 4.441079 GCTTCAGCTTGCCATCATGTAATT 60.441 41.667 0.00 0.00 38.21 1.40
1406 1412 4.642445 TCAGCTTGCCATCATGTAATTG 57.358 40.909 0.00 0.00 0.00 2.32
1407 1413 4.271661 TCAGCTTGCCATCATGTAATTGA 58.728 39.130 0.00 0.00 0.00 2.57
1408 1414 4.891168 TCAGCTTGCCATCATGTAATTGAT 59.109 37.500 0.00 0.00 36.79 2.57
1409 1415 5.009310 TCAGCTTGCCATCATGTAATTGATC 59.991 40.000 0.00 0.00 34.09 2.92
1410 1416 5.009710 CAGCTTGCCATCATGTAATTGATCT 59.990 40.000 0.00 0.00 34.09 2.75
1411 1417 5.241064 AGCTTGCCATCATGTAATTGATCTC 59.759 40.000 0.00 0.00 34.09 2.75
1412 1418 5.678132 TTGCCATCATGTAATTGATCTCG 57.322 39.130 0.00 0.00 34.09 4.04
1413 1419 4.707105 TGCCATCATGTAATTGATCTCGT 58.293 39.130 0.00 0.00 34.09 4.18
1414 1420 5.125356 TGCCATCATGTAATTGATCTCGTT 58.875 37.500 0.00 0.00 34.09 3.85
1415 1421 5.007921 TGCCATCATGTAATTGATCTCGTTG 59.992 40.000 0.00 0.00 34.09 4.10
1416 1422 5.446709 CCATCATGTAATTGATCTCGTTGC 58.553 41.667 0.00 0.00 34.09 4.17
1417 1423 5.007921 CCATCATGTAATTGATCTCGTTGCA 59.992 40.000 0.00 0.00 34.09 4.08
1418 1424 6.458615 CCATCATGTAATTGATCTCGTTGCAA 60.459 38.462 0.00 0.00 34.09 4.08
1419 1425 5.868257 TCATGTAATTGATCTCGTTGCAAC 58.132 37.500 19.89 19.89 0.00 4.17
1420 1426 5.411053 TCATGTAATTGATCTCGTTGCAACA 59.589 36.000 28.01 14.60 0.00 3.33
1421 1427 5.029650 TGTAATTGATCTCGTTGCAACAC 57.970 39.130 28.01 14.91 0.00 3.32
1422 1428 4.513318 TGTAATTGATCTCGTTGCAACACA 59.487 37.500 28.01 17.16 0.00 3.72
1423 1429 3.542712 ATTGATCTCGTTGCAACACAC 57.457 42.857 28.01 14.42 0.00 3.82
1424 1430 2.238942 TGATCTCGTTGCAACACACT 57.761 45.000 28.01 10.55 0.00 3.55
1425 1431 2.135139 TGATCTCGTTGCAACACACTC 58.865 47.619 28.01 18.23 0.00 3.51
1426 1432 1.461127 GATCTCGTTGCAACACACTCC 59.539 52.381 28.01 9.34 0.00 3.85
1427 1433 0.531974 TCTCGTTGCAACACACTCCC 60.532 55.000 28.01 0.00 0.00 4.30
1428 1434 0.532862 CTCGTTGCAACACACTCCCT 60.533 55.000 28.01 0.00 0.00 4.20
1429 1435 0.531974 TCGTTGCAACACACTCCCTC 60.532 55.000 28.01 0.00 0.00 4.30
1430 1436 1.507141 CGTTGCAACACACTCCCTCC 61.507 60.000 28.01 0.00 0.00 4.30
1431 1437 1.227823 TTGCAACACACTCCCTCCG 60.228 57.895 0.00 0.00 0.00 4.63
1432 1438 1.978455 TTGCAACACACTCCCTCCGT 61.978 55.000 0.00 0.00 0.00 4.69
1433 1439 1.668151 GCAACACACTCCCTCCGTC 60.668 63.158 0.00 0.00 0.00 4.79
1434 1440 1.372997 CAACACACTCCCTCCGTCG 60.373 63.158 0.00 0.00 0.00 5.12
1435 1441 3.222354 AACACACTCCCTCCGTCGC 62.222 63.158 0.00 0.00 0.00 5.19
1436 1442 3.680786 CACACTCCCTCCGTCGCA 61.681 66.667 0.00 0.00 0.00 5.10
1437 1443 2.915659 ACACTCCCTCCGTCGCAA 60.916 61.111 0.00 0.00 0.00 4.85
1438 1444 2.342279 CACTCCCTCCGTCGCAAA 59.658 61.111 0.00 0.00 0.00 3.68
1439 1445 1.301401 CACTCCCTCCGTCGCAAAA 60.301 57.895 0.00 0.00 0.00 2.44
1440 1446 0.882927 CACTCCCTCCGTCGCAAAAA 60.883 55.000 0.00 0.00 0.00 1.94
1460 1466 5.914898 AAAATAAGTGTCTATTGTGGGGC 57.085 39.130 0.00 0.00 0.00 5.80
1461 1467 2.684001 TAAGTGTCTATTGTGGGGCG 57.316 50.000 0.00 0.00 0.00 6.13
1462 1468 0.035439 AAGTGTCTATTGTGGGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
1463 1469 0.907704 AGTGTCTATTGTGGGGCGGA 60.908 55.000 0.00 0.00 0.00 5.54
1464 1470 0.180406 GTGTCTATTGTGGGGCGGAT 59.820 55.000 0.00 0.00 0.00 4.18
1465 1471 0.180171 TGTCTATTGTGGGGCGGATG 59.820 55.000 0.00 0.00 0.00 3.51
1466 1472 0.535102 GTCTATTGTGGGGCGGATGG 60.535 60.000 0.00 0.00 0.00 3.51
1467 1473 0.692756 TCTATTGTGGGGCGGATGGA 60.693 55.000 0.00 0.00 0.00 3.41
1468 1474 0.250467 CTATTGTGGGGCGGATGGAG 60.250 60.000 0.00 0.00 0.00 3.86
1469 1475 0.986019 TATTGTGGGGCGGATGGAGT 60.986 55.000 0.00 0.00 0.00 3.85
1470 1476 0.986019 ATTGTGGGGCGGATGGAGTA 60.986 55.000 0.00 0.00 0.00 2.59
1471 1477 0.986019 TTGTGGGGCGGATGGAGTAT 60.986 55.000 0.00 0.00 0.00 2.12
1472 1478 1.071471 GTGGGGCGGATGGAGTATG 59.929 63.158 0.00 0.00 0.00 2.39
1473 1479 1.383943 TGGGGCGGATGGAGTATGT 60.384 57.895 0.00 0.00 0.00 2.29
1474 1480 0.986019 TGGGGCGGATGGAGTATGTT 60.986 55.000 0.00 0.00 0.00 2.71
1475 1481 0.182775 GGGGCGGATGGAGTATGTTT 59.817 55.000 0.00 0.00 0.00 2.83
1476 1482 1.409661 GGGGCGGATGGAGTATGTTTT 60.410 52.381 0.00 0.00 0.00 2.43
1477 1483 2.375146 GGGCGGATGGAGTATGTTTTT 58.625 47.619 0.00 0.00 0.00 1.94
1496 1502 3.701532 TTTTACAGCTTGTTGGAACGG 57.298 42.857 0.00 0.00 0.00 4.44
1497 1503 2.335316 TTACAGCTTGTTGGAACGGT 57.665 45.000 0.00 0.00 0.00 4.83
1498 1504 1.588674 TACAGCTTGTTGGAACGGTG 58.411 50.000 0.00 0.00 0.00 4.94
1499 1505 0.393808 ACAGCTTGTTGGAACGGTGT 60.394 50.000 0.00 0.00 0.00 4.16
1500 1506 0.738389 CAGCTTGTTGGAACGGTGTT 59.262 50.000 0.00 0.00 0.00 3.32
1501 1507 1.134175 CAGCTTGTTGGAACGGTGTTT 59.866 47.619 0.00 0.00 0.00 2.83
1502 1508 1.822371 AGCTTGTTGGAACGGTGTTTT 59.178 42.857 0.00 0.00 0.00 2.43
1503 1509 2.232696 AGCTTGTTGGAACGGTGTTTTT 59.767 40.909 0.00 0.00 0.00 1.94
1504 1510 2.601314 GCTTGTTGGAACGGTGTTTTTC 59.399 45.455 0.00 0.00 0.00 2.29
1505 1511 2.943449 TGTTGGAACGGTGTTTTTCC 57.057 45.000 0.00 0.00 41.62 3.13
1509 1515 2.379972 TGGAACGGTGTTTTTCCATGT 58.620 42.857 0.00 0.00 45.19 3.21
1510 1516 2.099921 TGGAACGGTGTTTTTCCATGTG 59.900 45.455 0.00 0.00 45.19 3.21
1511 1517 2.100087 GGAACGGTGTTTTTCCATGTGT 59.900 45.455 0.00 0.00 41.01 3.72
1512 1518 2.861462 ACGGTGTTTTTCCATGTGTG 57.139 45.000 0.00 0.00 0.00 3.82
1513 1519 2.370349 ACGGTGTTTTTCCATGTGTGA 58.630 42.857 0.00 0.00 0.00 3.58
1514 1520 2.955660 ACGGTGTTTTTCCATGTGTGAT 59.044 40.909 0.00 0.00 0.00 3.06
1515 1521 3.383185 ACGGTGTTTTTCCATGTGTGATT 59.617 39.130 0.00 0.00 0.00 2.57
1516 1522 4.142049 ACGGTGTTTTTCCATGTGTGATTT 60.142 37.500 0.00 0.00 0.00 2.17
1517 1523 4.808364 CGGTGTTTTTCCATGTGTGATTTT 59.192 37.500 0.00 0.00 0.00 1.82
1518 1524 5.293079 CGGTGTTTTTCCATGTGTGATTTTT 59.707 36.000 0.00 0.00 0.00 1.94
1519 1525 6.485393 GGTGTTTTTCCATGTGTGATTTTTG 58.515 36.000 0.00 0.00 0.00 2.44
1520 1526 5.964751 GTGTTTTTCCATGTGTGATTTTTGC 59.035 36.000 0.00 0.00 0.00 3.68
1521 1527 5.065731 TGTTTTTCCATGTGTGATTTTTGCC 59.934 36.000 0.00 0.00 0.00 4.52
1522 1528 4.412796 TTTCCATGTGTGATTTTTGCCA 57.587 36.364 0.00 0.00 0.00 4.92
1523 1529 3.383620 TCCATGTGTGATTTTTGCCAC 57.616 42.857 0.00 0.00 0.00 5.01
1524 1530 2.036992 TCCATGTGTGATTTTTGCCACC 59.963 45.455 0.00 0.00 32.61 4.61
1525 1531 2.415776 CATGTGTGATTTTTGCCACCC 58.584 47.619 0.00 0.00 32.61 4.61
1526 1532 1.489481 TGTGTGATTTTTGCCACCCA 58.511 45.000 0.00 0.00 32.61 4.51
1527 1533 1.411977 TGTGTGATTTTTGCCACCCAG 59.588 47.619 0.00 0.00 32.61 4.45
1528 1534 1.412343 GTGTGATTTTTGCCACCCAGT 59.588 47.619 0.00 0.00 32.61 4.00
1529 1535 2.114616 TGTGATTTTTGCCACCCAGTT 58.885 42.857 0.00 0.00 32.61 3.16
1530 1536 2.102252 TGTGATTTTTGCCACCCAGTTC 59.898 45.455 0.00 0.00 32.61 3.01
1531 1537 2.102252 GTGATTTTTGCCACCCAGTTCA 59.898 45.455 0.00 0.00 0.00 3.18
1532 1538 2.102252 TGATTTTTGCCACCCAGTTCAC 59.898 45.455 0.00 0.00 0.00 3.18
1533 1539 0.457851 TTTTTGCCACCCAGTTCACG 59.542 50.000 0.00 0.00 0.00 4.35
1534 1540 0.394488 TTTTGCCACCCAGTTCACGA 60.394 50.000 0.00 0.00 0.00 4.35
1535 1541 0.817634 TTTGCCACCCAGTTCACGAG 60.818 55.000 0.00 0.00 0.00 4.18
1561 1568 1.225376 TGGCTAACCGCAACGACAAG 61.225 55.000 0.00 0.00 41.67 3.16
1572 1579 2.930682 GCAACGACAAGGAGAGATAACC 59.069 50.000 0.00 0.00 0.00 2.85
1575 1582 3.288964 ACGACAAGGAGAGATAACCGAT 58.711 45.455 0.00 0.00 0.00 4.18
1576 1583 3.700038 ACGACAAGGAGAGATAACCGATT 59.300 43.478 0.00 0.00 0.00 3.34
1577 1584 4.159879 ACGACAAGGAGAGATAACCGATTT 59.840 41.667 0.00 0.00 0.00 2.17
1578 1585 5.359009 ACGACAAGGAGAGATAACCGATTTA 59.641 40.000 0.00 0.00 0.00 1.40
1579 1586 5.915758 CGACAAGGAGAGATAACCGATTTAG 59.084 44.000 0.00 0.00 0.00 1.85
1580 1587 5.602628 ACAAGGAGAGATAACCGATTTAGC 58.397 41.667 0.00 0.00 0.00 3.09
1604 1611 5.220710 TGAAGGTGGAAGAAGAGAAGAAG 57.779 43.478 0.00 0.00 0.00 2.85
1626 1633 3.986006 GGACAGGGACACGCACGA 61.986 66.667 0.00 0.00 0.00 4.35
1705 1717 0.107945 GGTGGCAGGCACAAAACAAA 60.108 50.000 27.09 0.00 0.00 2.83
1710 1722 2.011046 GCAGGCACAAAACAAAGGCAA 61.011 47.619 0.00 0.00 0.00 4.52
1712 1724 2.746362 CAGGCACAAAACAAAGGCAAAA 59.254 40.909 0.00 0.00 0.00 2.44
1713 1725 3.190118 CAGGCACAAAACAAAGGCAAAAA 59.810 39.130 0.00 0.00 0.00 1.94
1735 1747 6.956299 AAATGAAATGAAAAGCGAATCTGG 57.044 33.333 0.00 0.00 0.00 3.86
1738 1750 3.772060 AATGAAAAGCGAATCTGGAGC 57.228 42.857 0.00 0.00 0.00 4.70
1747 1759 1.965754 GAATCTGGAGCCGGAGTGCT 61.966 60.000 5.05 0.00 46.37 4.40
1748 1760 2.249413 AATCTGGAGCCGGAGTGCTG 62.249 60.000 5.05 0.27 42.95 4.41
1830 1866 3.066190 TCCCTCGCACCGTGGTAG 61.066 66.667 0.00 0.00 38.62 3.18
1831 1867 4.143333 CCCTCGCACCGTGGTAGG 62.143 72.222 0.00 0.00 38.62 3.18
1834 1870 1.153823 CTCGCACCGTGGTAGGAAG 60.154 63.158 0.00 0.00 34.73 3.46
1837 1873 0.320073 CGCACCGTGGTAGGAAGAAA 60.320 55.000 0.00 0.00 34.73 2.52
1845 1881 5.424252 ACCGTGGTAGGAAGAAAATCATCTA 59.576 40.000 0.00 0.00 34.73 1.98
1847 1883 6.425114 CCGTGGTAGGAAGAAAATCATCTATG 59.575 42.308 0.00 0.00 0.00 2.23
1848 1884 6.425114 CGTGGTAGGAAGAAAATCATCTATGG 59.575 42.308 0.00 0.00 0.00 2.74
1949 2063 1.798813 CAACTAGCTGGACGGTTGTTC 59.201 52.381 3.17 0.00 37.05 3.18
1961 2075 2.970324 TTGTTCGGCGGTCACAGC 60.970 61.111 7.21 0.00 0.00 4.40
1988 2160 1.079503 GTTGACGATTGAGCTGGTCC 58.920 55.000 4.17 0.00 0.00 4.46
2023 2195 2.613506 GGACAAAACTCGCACCCGG 61.614 63.158 0.00 0.00 34.56 5.73
2024 2196 1.890510 GACAAAACTCGCACCCGGT 60.891 57.895 0.00 0.00 34.56 5.28
2025 2197 1.838568 GACAAAACTCGCACCCGGTC 61.839 60.000 0.00 0.00 34.56 4.79
2026 2198 2.663852 AAAACTCGCACCCGGTCG 60.664 61.111 0.00 0.54 34.56 4.79
2027 2199 3.450043 AAAACTCGCACCCGGTCGT 62.450 57.895 0.00 0.00 34.56 4.34
2092 2264 1.300003 CGCGCTCTGCTGATCTGAT 60.300 57.895 5.56 0.00 43.27 2.90
2109 2281 4.114597 TCTGATCAAAGGGAGGAAGGAAT 58.885 43.478 0.00 0.00 0.00 3.01
2110 2282 4.080129 TCTGATCAAAGGGAGGAAGGAATG 60.080 45.833 0.00 0.00 0.00 2.67
2188 2360 2.203480 GCAAGTTGGACCCAGGCA 60.203 61.111 4.75 0.00 0.00 4.75
2204 2376 4.794439 CACGCCGATGAGCACCGA 62.794 66.667 0.00 0.00 0.00 4.69
2227 2399 2.914379 CGAAAGGCGTATCCATCCC 58.086 57.895 0.00 0.00 37.29 3.85
2228 2400 0.944311 CGAAAGGCGTATCCATCCCG 60.944 60.000 0.00 0.00 37.29 5.14
2229 2401 0.106149 GAAAGGCGTATCCATCCCGT 59.894 55.000 0.00 0.00 37.29 5.28
2230 2402 0.106149 AAAGGCGTATCCATCCCGTC 59.894 55.000 0.00 0.00 37.29 4.79
2231 2403 1.755393 AAGGCGTATCCATCCCGTCC 61.755 60.000 0.00 0.00 37.29 4.79
2232 2404 2.342648 GCGTATCCATCCCGTCCC 59.657 66.667 0.00 0.00 0.00 4.46
2233 2405 3.057337 CGTATCCATCCCGTCCCC 58.943 66.667 0.00 0.00 0.00 4.81
2234 2406 2.927580 CGTATCCATCCCGTCCCCG 61.928 68.421 0.00 0.00 0.00 5.73
2235 2407 1.835712 GTATCCATCCCGTCCCCGT 60.836 63.158 0.00 0.00 0.00 5.28
2236 2408 1.835267 TATCCATCCCGTCCCCGTG 60.835 63.158 0.00 0.00 0.00 4.94
2237 2409 2.301121 TATCCATCCCGTCCCCGTGA 62.301 60.000 0.00 0.00 0.00 4.35
2238 2410 3.849951 CCATCCCGTCCCCGTGAG 61.850 72.222 0.00 0.00 0.00 3.51
2239 2411 4.530857 CATCCCGTCCCCGTGAGC 62.531 72.222 0.00 0.00 0.00 4.26
2240 2412 4.779733 ATCCCGTCCCCGTGAGCT 62.780 66.667 0.00 0.00 0.00 4.09
2243 2415 3.827898 CCGTCCCCGTGAGCTCTC 61.828 72.222 16.19 10.75 0.00 3.20
2244 2416 4.180946 CGTCCCCGTGAGCTCTCG 62.181 72.222 26.86 26.86 0.00 4.04
2245 2417 4.500116 GTCCCCGTGAGCTCTCGC 62.500 72.222 28.05 13.74 36.79 5.03
2248 2420 4.200283 CCCGTGAGCTCTCGCCTC 62.200 72.222 28.05 6.20 36.81 4.70
2249 2421 3.137459 CCGTGAGCTCTCGCCTCT 61.137 66.667 28.05 0.00 36.81 3.69
2250 2422 2.407210 CGTGAGCTCTCGCCTCTC 59.593 66.667 23.43 0.00 36.81 3.20
2251 2423 2.407210 GTGAGCTCTCGCCTCTCG 59.593 66.667 16.19 0.00 36.60 4.04
2252 2424 3.513438 TGAGCTCTCGCCTCTCGC 61.513 66.667 16.19 0.00 38.27 5.03
2253 2425 3.209097 GAGCTCTCGCCTCTCGCT 61.209 66.667 6.43 0.00 38.27 4.93
2254 2426 3.181169 GAGCTCTCGCCTCTCGCTC 62.181 68.421 6.43 0.00 40.07 5.03
2255 2427 3.209097 GCTCTCGCCTCTCGCTCT 61.209 66.667 0.00 0.00 38.27 4.09
2256 2428 3.022287 CTCTCGCCTCTCGCTCTC 58.978 66.667 0.00 0.00 38.27 3.20
2257 2429 2.515057 TCTCGCCTCTCGCTCTCC 60.515 66.667 0.00 0.00 38.27 3.71
2258 2430 3.947841 CTCGCCTCTCGCTCTCCG 61.948 72.222 0.00 0.00 38.27 4.63
2259 2431 4.779966 TCGCCTCTCGCTCTCCGT 62.780 66.667 0.00 0.00 38.27 4.69
2260 2432 4.244802 CGCCTCTCGCTCTCCGTC 62.245 72.222 0.00 0.00 38.35 4.79
2261 2433 2.826738 GCCTCTCGCTCTCCGTCT 60.827 66.667 0.00 0.00 38.35 4.18
2262 2434 3.106552 CCTCTCGCTCTCCGTCTG 58.893 66.667 0.00 0.00 38.35 3.51
2263 2435 1.747367 CCTCTCGCTCTCCGTCTGT 60.747 63.158 0.00 0.00 38.35 3.41
2264 2436 1.711060 CCTCTCGCTCTCCGTCTGTC 61.711 65.000 0.00 0.00 38.35 3.51
2265 2437 0.742990 CTCTCGCTCTCCGTCTGTCT 60.743 60.000 0.00 0.00 38.35 3.41
2266 2438 1.021920 TCTCGCTCTCCGTCTGTCTG 61.022 60.000 0.00 0.00 38.35 3.51
2267 2439 1.302383 CTCGCTCTCCGTCTGTCTGT 61.302 60.000 0.00 0.00 38.35 3.41
2268 2440 1.135731 CGCTCTCCGTCTGTCTGTC 59.864 63.158 0.00 0.00 0.00 3.51
2269 2441 1.302383 CGCTCTCCGTCTGTCTGTCT 61.302 60.000 0.00 0.00 0.00 3.41
2270 2442 1.740297 GCTCTCCGTCTGTCTGTCTA 58.260 55.000 0.00 0.00 0.00 2.59
2271 2443 2.294074 GCTCTCCGTCTGTCTGTCTAT 58.706 52.381 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.016736 CACTGACCTTTGACACCAAGTT 58.983 45.455 0.00 0.00 33.23 2.66
45 46 2.614057 GTCACTGACCTTTGACACCAAG 59.386 50.000 0.00 0.00 41.58 3.61
90 91 3.400599 AATAAGGTCCCGCCGCCAG 62.401 63.158 0.00 0.00 43.70 4.85
331 332 0.823356 TTGGGCAGCACCTTCAGTTC 60.823 55.000 0.00 0.00 39.10 3.01
423 424 3.303990 GCTTGCATGTTTCTTGTTCTCGA 60.304 43.478 1.14 0.00 0.00 4.04
496 497 6.578023 CCTCTTCCCAAAATTGTTTTGTGTA 58.422 36.000 12.53 0.00 46.53 2.90
499 500 4.450976 GCCTCTTCCCAAAATTGTTTTGT 58.549 39.130 12.53 0.00 46.53 2.83
543 544 3.384789 TGAGTGGATGTAGTGTAGGCATC 59.615 47.826 0.00 0.00 38.51 3.91
582 583 1.287191 GAGTGTGTCGCTGCAGAGA 59.713 57.895 20.43 18.51 0.00 3.10
583 584 1.006922 TGAGTGTGTCGCTGCAGAG 60.007 57.895 20.43 15.90 0.00 3.35
630 631 3.711190 AGTGCCATATAGACCACATCACA 59.289 43.478 0.00 0.00 0.00 3.58
732 733 1.481056 GCTGCCGGGGTATATCCAGT 61.481 60.000 2.18 0.00 38.11 4.00
840 841 4.290622 CCTGCACCACCCTTGCCT 62.291 66.667 0.00 0.00 39.39 4.75
1007 1008 3.808834 TCACAACCTCCAGAGAGTCTA 57.191 47.619 0.00 0.00 38.58 2.59
1122 1123 8.969260 TCATTAGCTGATCTTAAACATGACAT 57.031 30.769 0.00 0.00 0.00 3.06
1303 1309 2.231964 ACAATTACGCCGGAGTTCACTA 59.768 45.455 18.33 0.00 0.00 2.74
1304 1310 1.001633 ACAATTACGCCGGAGTTCACT 59.998 47.619 18.33 0.00 0.00 3.41
1305 1311 1.127951 CACAATTACGCCGGAGTTCAC 59.872 52.381 18.33 0.00 0.00 3.18
1306 1312 1.434555 CACAATTACGCCGGAGTTCA 58.565 50.000 18.33 3.99 0.00 3.18
1307 1313 0.096454 GCACAATTACGCCGGAGTTC 59.904 55.000 18.33 0.00 0.00 3.01
1308 1314 1.303091 GGCACAATTACGCCGGAGTT 61.303 55.000 18.33 0.00 38.82 3.01
1309 1315 1.743995 GGCACAATTACGCCGGAGT 60.744 57.895 17.10 17.10 38.82 3.85
1310 1316 3.098555 GGCACAATTACGCCGGAG 58.901 61.111 5.05 3.72 38.82 4.63
1316 1322 0.443088 TTTACGGCGGCACAATTACG 59.557 50.000 13.24 0.00 0.00 3.18
1317 1323 2.446282 CATTTACGGCGGCACAATTAC 58.554 47.619 13.24 0.00 0.00 1.89
1318 1324 1.202200 GCATTTACGGCGGCACAATTA 60.202 47.619 13.24 0.00 0.00 1.40
1319 1325 0.457681 GCATTTACGGCGGCACAATT 60.458 50.000 13.24 0.00 0.00 2.32
1320 1326 1.138671 GCATTTACGGCGGCACAAT 59.861 52.632 13.24 0.22 0.00 2.71
1321 1327 2.563942 GCATTTACGGCGGCACAA 59.436 55.556 13.24 0.00 0.00 3.33
1322 1328 3.436055 GGCATTTACGGCGGCACA 61.436 61.111 13.24 0.00 0.00 4.57
1323 1329 2.592623 GAAGGCATTTACGGCGGCAC 62.593 60.000 13.24 0.00 36.37 5.01
1324 1330 2.360600 AAGGCATTTACGGCGGCA 60.361 55.556 13.24 0.00 36.37 5.69
1325 1331 1.928706 TTGAAGGCATTTACGGCGGC 61.929 55.000 13.24 3.83 36.37 6.53
1326 1332 0.098728 CTTGAAGGCATTTACGGCGG 59.901 55.000 13.24 0.00 36.37 6.13
1327 1333 0.802494 ACTTGAAGGCATTTACGGCG 59.198 50.000 4.80 4.80 36.37 6.46
1328 1334 2.084546 AGACTTGAAGGCATTTACGGC 58.915 47.619 0.00 0.00 0.00 5.68
1329 1335 3.502211 ACAAGACTTGAAGGCATTTACGG 59.498 43.478 21.95 0.00 0.00 4.02
1330 1336 4.749245 ACAAGACTTGAAGGCATTTACG 57.251 40.909 21.95 0.00 0.00 3.18
1331 1337 7.435068 TCTTACAAGACTTGAAGGCATTTAC 57.565 36.000 21.95 0.00 0.00 2.01
1332 1338 7.174946 CCTTCTTACAAGACTTGAAGGCATTTA 59.825 37.037 21.95 0.00 44.51 1.40
1333 1339 6.015940 CCTTCTTACAAGACTTGAAGGCATTT 60.016 38.462 21.95 0.00 44.51 2.32
1334 1340 5.474876 CCTTCTTACAAGACTTGAAGGCATT 59.525 40.000 21.95 0.00 44.51 3.56
1335 1341 5.006386 CCTTCTTACAAGACTTGAAGGCAT 58.994 41.667 21.95 0.61 44.51 4.40
1336 1342 4.389374 CCTTCTTACAAGACTTGAAGGCA 58.611 43.478 21.95 9.79 44.51 4.75
1339 1345 5.049129 CCTTGCCTTCTTACAAGACTTGAAG 60.049 44.000 21.95 18.04 44.89 3.02
1340 1346 4.821805 CCTTGCCTTCTTACAAGACTTGAA 59.178 41.667 21.95 10.30 44.89 2.69
1341 1347 4.102524 TCCTTGCCTTCTTACAAGACTTGA 59.897 41.667 21.95 2.90 44.89 3.02
1342 1348 4.389374 TCCTTGCCTTCTTACAAGACTTG 58.611 43.478 13.77 13.77 44.89 3.16
1343 1349 4.706842 TCCTTGCCTTCTTACAAGACTT 57.293 40.909 4.39 0.00 44.89 3.01
1344 1350 4.141482 TGTTCCTTGCCTTCTTACAAGACT 60.141 41.667 4.39 0.00 44.89 3.24
1345 1351 4.134563 TGTTCCTTGCCTTCTTACAAGAC 58.865 43.478 4.39 0.00 44.89 3.01
1346 1352 4.431416 TGTTCCTTGCCTTCTTACAAGA 57.569 40.909 4.39 0.00 44.89 3.02
1347 1353 4.580580 AGTTGTTCCTTGCCTTCTTACAAG 59.419 41.667 0.00 0.00 42.35 3.16
1348 1354 4.532834 AGTTGTTCCTTGCCTTCTTACAA 58.467 39.130 0.00 0.00 0.00 2.41
1349 1355 4.164843 AGTTGTTCCTTGCCTTCTTACA 57.835 40.909 0.00 0.00 0.00 2.41
1350 1356 5.515797 AAAGTTGTTCCTTGCCTTCTTAC 57.484 39.130 0.00 0.00 0.00 2.34
1351 1357 5.654650 TCAAAAGTTGTTCCTTGCCTTCTTA 59.345 36.000 0.00 0.00 0.00 2.10
1352 1358 4.466015 TCAAAAGTTGTTCCTTGCCTTCTT 59.534 37.500 0.00 0.00 0.00 2.52
1353 1359 4.023291 TCAAAAGTTGTTCCTTGCCTTCT 58.977 39.130 0.00 0.00 0.00 2.85
1354 1360 4.385358 TCAAAAGTTGTTCCTTGCCTTC 57.615 40.909 0.00 0.00 0.00 3.46
1355 1361 4.162131 ACATCAAAAGTTGTTCCTTGCCTT 59.838 37.500 0.00 0.00 0.00 4.35
1356 1362 3.706086 ACATCAAAAGTTGTTCCTTGCCT 59.294 39.130 0.00 0.00 0.00 4.75
1357 1363 4.051237 GACATCAAAAGTTGTTCCTTGCC 58.949 43.478 0.00 0.00 0.00 4.52
1358 1364 4.051237 GGACATCAAAAGTTGTTCCTTGC 58.949 43.478 0.00 0.00 0.00 4.01
1359 1365 4.620982 GGGACATCAAAAGTTGTTCCTTG 58.379 43.478 0.00 0.00 38.32 3.61
1360 1366 3.317993 CGGGACATCAAAAGTTGTTCCTT 59.682 43.478 0.00 0.00 39.07 3.36
1361 1367 2.884639 CGGGACATCAAAAGTTGTTCCT 59.115 45.455 0.00 0.00 39.07 3.36
1362 1368 2.607038 GCGGGACATCAAAAGTTGTTCC 60.607 50.000 0.00 0.00 38.03 3.62
1363 1369 2.293399 AGCGGGACATCAAAAGTTGTTC 59.707 45.455 0.00 0.00 0.00 3.18
1364 1370 2.306847 AGCGGGACATCAAAAGTTGTT 58.693 42.857 0.00 0.00 0.00 2.83
1365 1371 1.981256 AGCGGGACATCAAAAGTTGT 58.019 45.000 0.00 0.00 0.00 3.32
1366 1372 2.293122 TGAAGCGGGACATCAAAAGTTG 59.707 45.455 0.00 0.00 0.00 3.16
1367 1373 2.554032 CTGAAGCGGGACATCAAAAGTT 59.446 45.455 0.00 0.00 0.00 2.66
1368 1374 2.154462 CTGAAGCGGGACATCAAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
1369 1375 1.135575 GCTGAAGCGGGACATCAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
1370 1376 0.881118 GCTGAAGCGGGACATCAAAA 59.119 50.000 0.00 0.00 0.00 2.44
1371 1377 2.555123 GCTGAAGCGGGACATCAAA 58.445 52.632 0.00 0.00 0.00 2.69
1372 1378 4.301505 GCTGAAGCGGGACATCAA 57.698 55.556 0.00 0.00 0.00 2.57
1382 1388 0.815734 ACATGATGGCAAGCTGAAGC 59.184 50.000 0.00 0.00 42.49 3.86
1383 1389 4.913335 ATTACATGATGGCAAGCTGAAG 57.087 40.909 0.00 0.00 0.00 3.02
1384 1390 4.705991 TCAATTACATGATGGCAAGCTGAA 59.294 37.500 0.00 0.00 0.00 3.02
1385 1391 4.271661 TCAATTACATGATGGCAAGCTGA 58.728 39.130 0.00 0.00 0.00 4.26
1386 1392 4.642445 TCAATTACATGATGGCAAGCTG 57.358 40.909 0.00 0.00 0.00 4.24
1387 1393 5.138276 AGATCAATTACATGATGGCAAGCT 58.862 37.500 0.00 0.00 40.08 3.74
1388 1394 5.449107 AGATCAATTACATGATGGCAAGC 57.551 39.130 0.00 0.00 40.08 4.01
1389 1395 5.237996 ACGAGATCAATTACATGATGGCAAG 59.762 40.000 0.00 0.00 40.08 4.01
1390 1396 5.125356 ACGAGATCAATTACATGATGGCAA 58.875 37.500 0.00 0.00 40.08 4.52
1391 1397 4.707105 ACGAGATCAATTACATGATGGCA 58.293 39.130 0.00 0.00 40.08 4.92
1392 1398 5.446709 CAACGAGATCAATTACATGATGGC 58.553 41.667 0.00 0.00 40.08 4.40
1393 1399 5.007921 TGCAACGAGATCAATTACATGATGG 59.992 40.000 0.00 0.00 40.08 3.51
1394 1400 6.051646 TGCAACGAGATCAATTACATGATG 57.948 37.500 0.00 0.00 40.08 3.07
1395 1401 6.093909 TGTTGCAACGAGATCAATTACATGAT 59.906 34.615 23.79 0.00 42.62 2.45
1396 1402 5.411053 TGTTGCAACGAGATCAATTACATGA 59.589 36.000 23.79 0.00 0.00 3.07
1397 1403 5.509272 GTGTTGCAACGAGATCAATTACATG 59.491 40.000 23.79 0.00 0.00 3.21
1398 1404 5.181056 TGTGTTGCAACGAGATCAATTACAT 59.819 36.000 23.79 0.00 0.00 2.29
1399 1405 4.513318 TGTGTTGCAACGAGATCAATTACA 59.487 37.500 23.79 15.06 0.00 2.41
1400 1406 4.846137 GTGTGTTGCAACGAGATCAATTAC 59.154 41.667 23.79 12.76 0.00 1.89
1401 1407 4.754618 AGTGTGTTGCAACGAGATCAATTA 59.245 37.500 23.79 0.00 0.00 1.40
1402 1408 3.565482 AGTGTGTTGCAACGAGATCAATT 59.435 39.130 23.79 7.66 0.00 2.32
1403 1409 3.141398 AGTGTGTTGCAACGAGATCAAT 58.859 40.909 23.79 13.50 0.00 2.57
1404 1410 2.543848 GAGTGTGTTGCAACGAGATCAA 59.456 45.455 23.79 2.11 0.00 2.57
1405 1411 2.135139 GAGTGTGTTGCAACGAGATCA 58.865 47.619 23.79 14.21 0.00 2.92
1406 1412 1.461127 GGAGTGTGTTGCAACGAGATC 59.539 52.381 23.79 17.83 0.00 2.75
1407 1413 1.512926 GGAGTGTGTTGCAACGAGAT 58.487 50.000 23.79 10.65 0.00 2.75
1408 1414 0.531974 GGGAGTGTGTTGCAACGAGA 60.532 55.000 23.79 9.56 0.00 4.04
1409 1415 0.532862 AGGGAGTGTGTTGCAACGAG 60.533 55.000 23.79 0.00 0.00 4.18
1410 1416 0.531974 GAGGGAGTGTGTTGCAACGA 60.532 55.000 23.79 10.87 0.00 3.85
1411 1417 1.507141 GGAGGGAGTGTGTTGCAACG 61.507 60.000 23.79 0.00 0.00 4.10
1412 1418 1.507141 CGGAGGGAGTGTGTTGCAAC 61.507 60.000 22.83 22.83 0.00 4.17
1413 1419 1.227823 CGGAGGGAGTGTGTTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
1414 1420 2.377628 GACGGAGGGAGTGTGTTGCA 62.378 60.000 0.00 0.00 0.00 4.08
1415 1421 1.668151 GACGGAGGGAGTGTGTTGC 60.668 63.158 0.00 0.00 0.00 4.17
1416 1422 1.372997 CGACGGAGGGAGTGTGTTG 60.373 63.158 0.00 0.00 0.00 3.33
1417 1423 3.048602 CGACGGAGGGAGTGTGTT 58.951 61.111 0.00 0.00 0.00 3.32
1418 1424 3.681835 GCGACGGAGGGAGTGTGT 61.682 66.667 0.00 0.00 0.00 3.72
1419 1425 2.709125 TTTGCGACGGAGGGAGTGTG 62.709 60.000 0.00 0.00 0.00 3.82
1420 1426 2.035237 TTTTGCGACGGAGGGAGTGT 62.035 55.000 0.00 0.00 0.00 3.55
1421 1427 0.882927 TTTTTGCGACGGAGGGAGTG 60.883 55.000 0.00 0.00 0.00 3.51
1422 1428 1.448497 TTTTTGCGACGGAGGGAGT 59.552 52.632 0.00 0.00 0.00 3.85
1423 1429 4.371975 TTTTTGCGACGGAGGGAG 57.628 55.556 0.00 0.00 0.00 4.30
1437 1443 5.105917 CGCCCCACAATAGACACTTATTTTT 60.106 40.000 0.00 0.00 0.00 1.94
1438 1444 4.398044 CGCCCCACAATAGACACTTATTTT 59.602 41.667 0.00 0.00 0.00 1.82
1439 1445 3.945285 CGCCCCACAATAGACACTTATTT 59.055 43.478 0.00 0.00 0.00 1.40
1440 1446 3.541632 CGCCCCACAATAGACACTTATT 58.458 45.455 0.00 0.00 0.00 1.40
1441 1447 2.158813 CCGCCCCACAATAGACACTTAT 60.159 50.000 0.00 0.00 0.00 1.73
1442 1448 1.208535 CCGCCCCACAATAGACACTTA 59.791 52.381 0.00 0.00 0.00 2.24
1443 1449 0.035439 CCGCCCCACAATAGACACTT 60.035 55.000 0.00 0.00 0.00 3.16
1444 1450 0.907704 TCCGCCCCACAATAGACACT 60.908 55.000 0.00 0.00 0.00 3.55
1445 1451 0.180406 ATCCGCCCCACAATAGACAC 59.820 55.000 0.00 0.00 0.00 3.67
1446 1452 0.180171 CATCCGCCCCACAATAGACA 59.820 55.000 0.00 0.00 0.00 3.41
1447 1453 0.535102 CCATCCGCCCCACAATAGAC 60.535 60.000 0.00 0.00 0.00 2.59
1448 1454 0.692756 TCCATCCGCCCCACAATAGA 60.693 55.000 0.00 0.00 0.00 1.98
1449 1455 0.250467 CTCCATCCGCCCCACAATAG 60.250 60.000 0.00 0.00 0.00 1.73
1450 1456 0.986019 ACTCCATCCGCCCCACAATA 60.986 55.000 0.00 0.00 0.00 1.90
1451 1457 0.986019 TACTCCATCCGCCCCACAAT 60.986 55.000 0.00 0.00 0.00 2.71
1452 1458 0.986019 ATACTCCATCCGCCCCACAA 60.986 55.000 0.00 0.00 0.00 3.33
1453 1459 1.383943 ATACTCCATCCGCCCCACA 60.384 57.895 0.00 0.00 0.00 4.17
1454 1460 1.071471 CATACTCCATCCGCCCCAC 59.929 63.158 0.00 0.00 0.00 4.61
1455 1461 0.986019 AACATACTCCATCCGCCCCA 60.986 55.000 0.00 0.00 0.00 4.96
1456 1462 0.182775 AAACATACTCCATCCGCCCC 59.817 55.000 0.00 0.00 0.00 5.80
1457 1463 2.052782 AAAACATACTCCATCCGCCC 57.947 50.000 0.00 0.00 0.00 6.13
1475 1481 3.444388 ACCGTTCCAACAAGCTGTAAAAA 59.556 39.130 0.00 0.00 0.00 1.94
1476 1482 3.018149 ACCGTTCCAACAAGCTGTAAAA 58.982 40.909 0.00 0.00 0.00 1.52
1477 1483 2.356382 CACCGTTCCAACAAGCTGTAAA 59.644 45.455 0.00 0.00 0.00 2.01
1478 1484 1.944024 CACCGTTCCAACAAGCTGTAA 59.056 47.619 0.00 0.00 0.00 2.41
1479 1485 1.134340 ACACCGTTCCAACAAGCTGTA 60.134 47.619 0.00 0.00 0.00 2.74
1480 1486 0.393808 ACACCGTTCCAACAAGCTGT 60.394 50.000 0.00 0.00 0.00 4.40
1481 1487 0.738389 AACACCGTTCCAACAAGCTG 59.262 50.000 0.00 0.00 0.00 4.24
1482 1488 1.470051 AAACACCGTTCCAACAAGCT 58.530 45.000 0.00 0.00 0.00 3.74
1483 1489 2.287393 AAAACACCGTTCCAACAAGC 57.713 45.000 0.00 0.00 0.00 4.01
1484 1490 3.183754 GGAAAAACACCGTTCCAACAAG 58.816 45.455 0.00 0.00 42.51 3.16
1485 1491 3.233684 GGAAAAACACCGTTCCAACAA 57.766 42.857 0.00 0.00 42.51 2.83
1486 1492 2.943449 GGAAAAACACCGTTCCAACA 57.057 45.000 0.00 0.00 42.51 3.33
1490 1496 2.100087 ACACATGGAAAAACACCGTTCC 59.900 45.455 0.00 0.00 43.15 3.62
1491 1497 3.112580 CACACATGGAAAAACACCGTTC 58.887 45.455 0.00 0.00 0.00 3.95
1492 1498 2.755655 TCACACATGGAAAAACACCGTT 59.244 40.909 0.00 0.00 0.00 4.44
1493 1499 2.370349 TCACACATGGAAAAACACCGT 58.630 42.857 0.00 0.00 0.00 4.83
1494 1500 3.641437 ATCACACATGGAAAAACACCG 57.359 42.857 0.00 0.00 0.00 4.94
1495 1501 6.485393 CAAAAATCACACATGGAAAAACACC 58.515 36.000 0.00 0.00 0.00 4.16
1496 1502 5.964751 GCAAAAATCACACATGGAAAAACAC 59.035 36.000 0.00 0.00 0.00 3.32
1497 1503 5.065731 GGCAAAAATCACACATGGAAAAACA 59.934 36.000 0.00 0.00 0.00 2.83
1498 1504 5.065731 TGGCAAAAATCACACATGGAAAAAC 59.934 36.000 0.00 0.00 0.00 2.43
1499 1505 5.065731 GTGGCAAAAATCACACATGGAAAAA 59.934 36.000 0.00 0.00 34.16 1.94
1500 1506 4.574013 GTGGCAAAAATCACACATGGAAAA 59.426 37.500 0.00 0.00 34.16 2.29
1501 1507 4.125703 GTGGCAAAAATCACACATGGAAA 58.874 39.130 0.00 0.00 34.16 3.13
1502 1508 3.494048 GGTGGCAAAAATCACACATGGAA 60.494 43.478 0.00 0.00 35.62 3.53
1503 1509 2.036992 GGTGGCAAAAATCACACATGGA 59.963 45.455 0.00 0.00 35.62 3.41
1504 1510 2.415776 GGTGGCAAAAATCACACATGG 58.584 47.619 0.00 0.00 35.62 3.66
1505 1511 2.224233 TGGGTGGCAAAAATCACACATG 60.224 45.455 0.00 0.00 41.71 3.21
1506 1512 2.037511 CTGGGTGGCAAAAATCACACAT 59.962 45.455 0.00 0.00 44.91 3.21
1507 1513 1.411977 CTGGGTGGCAAAAATCACACA 59.588 47.619 0.00 0.00 43.99 3.72
1508 1514 1.412343 ACTGGGTGGCAAAAATCACAC 59.588 47.619 0.00 0.00 37.77 3.82
1509 1515 1.786937 ACTGGGTGGCAAAAATCACA 58.213 45.000 0.00 0.00 35.74 3.58
1510 1516 2.102252 TGAACTGGGTGGCAAAAATCAC 59.898 45.455 0.00 0.00 0.00 3.06
1511 1517 2.102252 GTGAACTGGGTGGCAAAAATCA 59.898 45.455 0.00 0.00 0.00 2.57
1512 1518 2.754472 GTGAACTGGGTGGCAAAAATC 58.246 47.619 0.00 0.00 0.00 2.17
1513 1519 1.068434 CGTGAACTGGGTGGCAAAAAT 59.932 47.619 0.00 0.00 0.00 1.82
1514 1520 0.457851 CGTGAACTGGGTGGCAAAAA 59.542 50.000 0.00 0.00 0.00 1.94
1515 1521 0.394488 TCGTGAACTGGGTGGCAAAA 60.394 50.000 0.00 0.00 0.00 2.44
1516 1522 0.817634 CTCGTGAACTGGGTGGCAAA 60.818 55.000 0.00 0.00 0.00 3.68
1517 1523 1.227823 CTCGTGAACTGGGTGGCAA 60.228 57.895 0.00 0.00 0.00 4.52
1518 1524 2.425592 CTCGTGAACTGGGTGGCA 59.574 61.111 0.00 0.00 0.00 4.92
1519 1525 3.050275 GCTCGTGAACTGGGTGGC 61.050 66.667 0.00 0.00 0.00 5.01
1520 1526 1.071471 AAGCTCGTGAACTGGGTGG 59.929 57.895 0.00 0.00 0.00 4.61
1521 1527 1.230635 CCAAGCTCGTGAACTGGGTG 61.231 60.000 0.00 0.00 0.00 4.61
1522 1528 1.071471 CCAAGCTCGTGAACTGGGT 59.929 57.895 0.00 0.00 0.00 4.51
1523 1529 0.535102 AACCAAGCTCGTGAACTGGG 60.535 55.000 3.51 0.00 32.74 4.45
1524 1530 0.588252 CAACCAAGCTCGTGAACTGG 59.412 55.000 0.00 0.00 0.00 4.00
1525 1531 0.588252 CCAACCAAGCTCGTGAACTG 59.412 55.000 0.00 0.00 0.00 3.16
1526 1532 1.166531 GCCAACCAAGCTCGTGAACT 61.167 55.000 0.00 0.00 0.00 3.01
1527 1533 1.166531 AGCCAACCAAGCTCGTGAAC 61.167 55.000 0.00 0.00 34.91 3.18
1528 1534 0.394938 TAGCCAACCAAGCTCGTGAA 59.605 50.000 0.00 0.00 41.83 3.18
1529 1535 0.394938 TTAGCCAACCAAGCTCGTGA 59.605 50.000 0.00 0.00 41.83 4.35
1530 1536 0.517316 GTTAGCCAACCAAGCTCGTG 59.483 55.000 0.00 0.00 41.83 4.35
1531 1537 2.928416 GTTAGCCAACCAAGCTCGT 58.072 52.632 0.00 0.00 41.83 4.18
1561 1568 5.844004 TCAAGCTAAATCGGTTATCTCTCC 58.156 41.667 0.00 0.00 0.00 3.71
1572 1579 4.253685 TCTTCCACCTTCAAGCTAAATCG 58.746 43.478 0.00 0.00 0.00 3.34
1575 1582 5.071788 TCTCTTCTTCCACCTTCAAGCTAAA 59.928 40.000 0.00 0.00 0.00 1.85
1576 1583 4.593206 TCTCTTCTTCCACCTTCAAGCTAA 59.407 41.667 0.00 0.00 0.00 3.09
1577 1584 4.160329 TCTCTTCTTCCACCTTCAAGCTA 58.840 43.478 0.00 0.00 0.00 3.32
1578 1585 2.975489 TCTCTTCTTCCACCTTCAAGCT 59.025 45.455 0.00 0.00 0.00 3.74
1579 1586 3.409026 TCTCTTCTTCCACCTTCAAGC 57.591 47.619 0.00 0.00 0.00 4.01
1580 1587 5.220710 TCTTCTCTTCTTCCACCTTCAAG 57.779 43.478 0.00 0.00 0.00 3.02
1638 1645 1.978455 ATATTTCCGCGTCTGGCCCA 61.978 55.000 4.92 0.00 38.94 5.36
1641 1648 1.279840 GCATATTTCCGCGTCTGGC 59.720 57.895 4.92 0.00 38.69 4.85
1652 1664 1.439353 CCTGCTCGCCACGCATATTT 61.439 55.000 0.00 0.00 36.70 1.40
1688 1700 0.177604 CCTTTGTTTTGTGCCTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
1710 1722 7.656948 TCCAGATTCGCTTTTCATTTCATTTTT 59.343 29.630 0.00 0.00 0.00 1.94
1712 1724 6.690530 TCCAGATTCGCTTTTCATTTCATTT 58.309 32.000 0.00 0.00 0.00 2.32
1713 1725 6.271488 TCCAGATTCGCTTTTCATTTCATT 57.729 33.333 0.00 0.00 0.00 2.57
1714 1726 5.678107 GCTCCAGATTCGCTTTTCATTTCAT 60.678 40.000 0.00 0.00 0.00 2.57
1715 1727 4.379813 GCTCCAGATTCGCTTTTCATTTCA 60.380 41.667 0.00 0.00 0.00 2.69
1716 1728 4.101235 GCTCCAGATTCGCTTTTCATTTC 58.899 43.478 0.00 0.00 0.00 2.17
1812 1848 3.352338 CTACCACGGTGCGAGGGAC 62.352 68.421 1.68 0.00 41.62 4.46
1813 1849 3.066190 CTACCACGGTGCGAGGGA 61.066 66.667 1.68 0.00 41.62 4.20
1815 1851 2.558554 CTTCCTACCACGGTGCGAGG 62.559 65.000 16.42 16.42 42.89 4.63
1817 1853 1.180456 TTCTTCCTACCACGGTGCGA 61.180 55.000 1.68 0.00 0.00 5.10
1819 1855 1.886886 TTTTCTTCCTACCACGGTGC 58.113 50.000 1.68 0.00 0.00 5.01
1820 1856 3.670625 TGATTTTCTTCCTACCACGGTG 58.329 45.455 0.00 0.00 0.00 4.94
1821 1857 4.225267 AGATGATTTTCTTCCTACCACGGT 59.775 41.667 0.00 0.00 0.00 4.83
1822 1858 4.770795 AGATGATTTTCTTCCTACCACGG 58.229 43.478 0.00 0.00 0.00 4.94
1823 1859 6.425114 CCATAGATGATTTTCTTCCTACCACG 59.575 42.308 0.00 0.00 0.00 4.94
1824 1860 6.205658 GCCATAGATGATTTTCTTCCTACCAC 59.794 42.308 0.00 0.00 0.00 4.16
1825 1861 6.299141 GCCATAGATGATTTTCTTCCTACCA 58.701 40.000 0.00 0.00 0.00 3.25
1826 1862 5.409826 CGCCATAGATGATTTTCTTCCTACC 59.590 44.000 0.00 0.00 0.00 3.18
1827 1863 5.106908 GCGCCATAGATGATTTTCTTCCTAC 60.107 44.000 0.00 0.00 0.00 3.18
1828 1864 4.997395 GCGCCATAGATGATTTTCTTCCTA 59.003 41.667 0.00 0.00 0.00 2.94
1830 1866 3.364366 CGCGCCATAGATGATTTTCTTCC 60.364 47.826 0.00 0.00 0.00 3.46
1831 1867 3.364366 CCGCGCCATAGATGATTTTCTTC 60.364 47.826 0.00 0.00 0.00 2.87
1834 1870 1.873591 ACCGCGCCATAGATGATTTTC 59.126 47.619 0.00 0.00 0.00 2.29
1837 1873 0.667487 CGACCGCGCCATAGATGATT 60.667 55.000 0.00 0.00 0.00 2.57
1864 1900 2.357517 CACCACGGACCAGAGCAC 60.358 66.667 0.00 0.00 0.00 4.40
1866 1902 2.048127 GTCACCACGGACCAGAGC 60.048 66.667 0.00 0.00 0.00 4.09
1920 2027 1.451028 CAGCTAGTTGCCTGCCCTC 60.451 63.158 0.00 0.00 44.23 4.30
1922 2029 2.439156 CCAGCTAGTTGCCTGCCC 60.439 66.667 0.17 0.00 44.23 5.36
1923 2030 1.746991 GTCCAGCTAGTTGCCTGCC 60.747 63.158 0.17 0.00 44.23 4.85
1925 2032 1.448540 CCGTCCAGCTAGTTGCCTG 60.449 63.158 0.17 0.00 44.23 4.85
1926 2033 1.481056 AACCGTCCAGCTAGTTGCCT 61.481 55.000 0.17 0.00 44.23 4.75
1933 2043 1.290955 CCGAACAACCGTCCAGCTA 59.709 57.895 0.00 0.00 0.00 3.32
1940 2050 4.224274 TGACCGCCGAACAACCGT 62.224 61.111 0.00 0.00 0.00 4.83
1943 2053 2.935955 CTGTGACCGCCGAACAAC 59.064 61.111 0.00 0.00 0.00 3.32
1961 2075 1.154672 CAATCGTCAACACCGTGCG 60.155 57.895 0.00 0.00 0.00 5.34
1962 2076 0.163788 CTCAATCGTCAACACCGTGC 59.836 55.000 0.00 0.00 0.00 5.34
2008 2180 2.943653 GACCGGGTGCGAGTTTTG 59.056 61.111 3.30 0.00 0.00 2.44
2023 2195 1.733399 GACCTGACCAGCGAACGAC 60.733 63.158 0.00 0.00 0.00 4.34
2024 2196 2.649034 GACCTGACCAGCGAACGA 59.351 61.111 0.00 0.00 0.00 3.85
2025 2197 2.805353 CGACCTGACCAGCGAACG 60.805 66.667 0.00 0.00 0.00 3.95
2026 2198 2.432628 CCGACCTGACCAGCGAAC 60.433 66.667 0.00 0.00 0.00 3.95
2027 2199 4.373116 GCCGACCTGACCAGCGAA 62.373 66.667 0.00 0.00 0.00 4.70
2057 2229 1.273887 CGGCGGTCTACGTACGTAG 59.726 63.158 37.87 37.87 46.82 3.51
2058 2230 2.808958 GCGGCGGTCTACGTACGTA 61.809 63.158 25.41 25.41 46.52 3.57
2059 2231 4.166011 GCGGCGGTCTACGTACGT 62.166 66.667 25.98 25.98 46.52 3.57
2081 2253 2.172082 CCTCCCTTTGATCAGATCAGCA 59.828 50.000 12.97 4.03 40.94 4.41
2085 2257 3.713764 TCCTTCCTCCCTTTGATCAGATC 59.286 47.826 3.11 3.11 0.00 2.75
2086 2258 3.740780 TCCTTCCTCCCTTTGATCAGAT 58.259 45.455 0.00 0.00 0.00 2.90
2092 2264 2.578021 CTCCATTCCTTCCTCCCTTTGA 59.422 50.000 0.00 0.00 0.00 2.69
2109 2281 1.228429 CCGCCCTTGTTTTCCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
2110 2282 2.636412 GCCGCCCTTGTTTTCCTCC 61.636 63.158 0.00 0.00 0.00 4.30
2140 2312 1.800681 GCCTGAATTTTCCGGTCCG 59.199 57.895 3.60 3.60 34.46 4.79
2144 2316 1.026718 AGCTCGCCTGAATTTTCCGG 61.027 55.000 0.00 0.00 35.00 5.14
2145 2317 0.375106 GAGCTCGCCTGAATTTTCCG 59.625 55.000 0.00 0.00 0.00 4.30
2168 2340 3.365265 CTGGGTCCAACTTGCCGC 61.365 66.667 0.00 0.00 0.00 6.53
2188 2360 4.796231 GTCGGTGCTCATCGGCGT 62.796 66.667 6.85 0.00 35.26 5.68
2192 2364 2.579787 GTCGGTCGGTGCTCATCG 60.580 66.667 0.00 0.00 36.00 3.84
2200 2372 4.712425 CGCCTTTCGTCGGTCGGT 62.712 66.667 0.00 0.00 40.32 4.69
2244 2416 2.826738 AGACGGAGAGCGAGAGGC 60.827 66.667 0.00 0.00 44.05 4.70
2245 2417 1.711060 GACAGACGGAGAGCGAGAGG 61.711 65.000 0.00 0.00 0.00 3.69
2246 2418 0.742990 AGACAGACGGAGAGCGAGAG 60.743 60.000 0.00 0.00 0.00 3.20
2247 2419 1.021920 CAGACAGACGGAGAGCGAGA 61.022 60.000 0.00 0.00 0.00 4.04
2248 2420 1.302383 ACAGACAGACGGAGAGCGAG 61.302 60.000 0.00 0.00 0.00 5.03
2249 2421 1.299562 GACAGACAGACGGAGAGCGA 61.300 60.000 0.00 0.00 0.00 4.93
2250 2422 1.135731 GACAGACAGACGGAGAGCG 59.864 63.158 0.00 0.00 0.00 5.03
2251 2423 1.740297 TAGACAGACAGACGGAGAGC 58.260 55.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.