Multiple sequence alignment - TraesCS1B01G436100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G436100 chr1B 100.000 3065 0 0 1 3065 659572754 659569690 0.000000e+00 5661
1 TraesCS1B01G436100 chr1D 95.461 2225 86 4 849 3065 474128577 474130794 0.000000e+00 3535
2 TraesCS1B01G436100 chr1D 89.884 692 37 13 1 673 474125276 474125953 0.000000e+00 859
3 TraesCS1B01G436100 chr1D 78.709 1193 211 31 856 2025 474289018 474290190 0.000000e+00 756
4 TraesCS1B01G436100 chr1D 77.228 909 183 14 2168 3064 474290347 474291243 7.580000e-141 510
5 TraesCS1B01G436100 chr1D 77.031 923 169 28 2168 3064 474267132 474268037 9.880000e-135 490
6 TraesCS1B01G436100 chr1D 78.238 579 119 4 1449 2022 474266411 474266987 6.250000e-97 364
7 TraesCS1B01G436100 chr1D 93.452 168 8 3 667 833 427825885 427826050 2.360000e-61 246
8 TraesCS1B01G436100 chr1A 86.584 2266 248 27 834 3065 568550124 568552367 0.000000e+00 2449
9 TraesCS1B01G436100 chr1A 78.859 1192 211 30 856 2025 568644185 568645357 0.000000e+00 767
10 TraesCS1B01G436100 chr1A 78.756 579 116 4 1449 2022 568687349 568687925 6.200000e-102 381
11 TraesCS1B01G436100 chr1A 90.000 300 20 5 1 299 568549653 568549943 2.230000e-101 379
12 TraesCS1B01G436100 chr1A 76.620 710 129 23 2378 3064 568688442 568689137 1.050000e-94 357
13 TraesCS1B01G436100 chr1A 93.333 165 8 2 670 833 584997107 584996945 1.100000e-59 241
14 TraesCS1B01G436100 chr1A 90.964 166 11 3 670 834 558948808 558948646 1.430000e-53 220
15 TraesCS1B01G436100 chr1A 90.909 77 6 1 598 673 568550033 568550109 5.410000e-18 102
16 TraesCS1B01G436100 chrUn 78.943 1192 210 30 856 2025 8470998 8472170 0.000000e+00 773
17 TraesCS1B01G436100 chrUn 77.726 862 170 12 2214 3064 8472373 8473223 2.730000e-140 508
18 TraesCS1B01G436100 chr4A 93.333 165 8 2 670 833 742423815 742423977 1.100000e-59 241
19 TraesCS1B01G436100 chr7B 91.566 166 10 3 670 833 746157751 746157588 3.070000e-55 226
20 TraesCS1B01G436100 chr7D 90.909 165 12 2 670 833 400867382 400867544 5.150000e-53 219
21 TraesCS1B01G436100 chr7A 90.909 165 10 3 670 833 76832350 76832190 1.850000e-52 217
22 TraesCS1B01G436100 chr2D 90.683 161 13 1 673 833 639533853 639533695 2.390000e-51 213
23 TraesCS1B01G436100 chr5B 89.697 165 14 3 670 833 93221574 93221412 1.110000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G436100 chr1B 659569690 659572754 3064 True 5661.000000 5661 100.000000 1 3065 1 chr1B.!!$R1 3064
1 TraesCS1B01G436100 chr1D 474125276 474130794 5518 False 2197.000000 3535 92.672500 1 3065 2 chr1D.!!$F2 3064
2 TraesCS1B01G436100 chr1D 474289018 474291243 2225 False 633.000000 756 77.968500 856 3064 2 chr1D.!!$F4 2208
3 TraesCS1B01G436100 chr1D 474266411 474268037 1626 False 427.000000 490 77.634500 1449 3064 2 chr1D.!!$F3 1615
4 TraesCS1B01G436100 chr1A 568549653 568552367 2714 False 976.666667 2449 89.164333 1 3065 3 chr1A.!!$F2 3064
5 TraesCS1B01G436100 chr1A 568644185 568645357 1172 False 767.000000 767 78.859000 856 2025 1 chr1A.!!$F1 1169
6 TraesCS1B01G436100 chr1A 568687349 568689137 1788 False 369.000000 381 77.688000 1449 3064 2 chr1A.!!$F3 1615
7 TraesCS1B01G436100 chrUn 8470998 8473223 2225 False 640.500000 773 78.334500 856 3064 2 chrUn.!!$F1 2208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 772 0.103755 GATCTGAGCCGCTGATCACA 59.896 55.0 13.35 0.0 45.85 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 4752 1.471287 TGCGGTCGAATATAGATCGGG 59.529 52.381 13.42 3.31 42.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.770110 AAGGAGAGTGGGTGGTGCA 60.770 57.895 0.00 0.00 0.00 4.57
99 101 2.757314 TCGACTCTGATCTCAGCAATGT 59.243 45.455 2.21 0.00 43.46 2.71
125 127 9.171877 TGCAAATCAAATTAAAAGGACAAAAGT 57.828 25.926 0.00 0.00 0.00 2.66
220 222 4.115279 CGGAGCGCATCATCAGTT 57.885 55.556 11.47 0.00 0.00 3.16
221 223 1.930100 CGGAGCGCATCATCAGTTC 59.070 57.895 11.47 0.00 0.00 3.01
268 270 5.398169 CAGGATCGATCGAGGAGAAATTAG 58.602 45.833 23.84 1.43 0.00 1.73
272 274 4.204799 TCGATCGAGGAGAAATTAGTGGA 58.795 43.478 15.15 0.00 0.00 4.02
378 380 4.592942 AGATCTTTTCTGTAAGCATGCCA 58.407 39.130 15.66 4.33 31.79 4.92
443 445 0.594602 TTTCACTGCAGTGCTGATGC 59.405 50.000 36.76 0.00 45.25 3.91
550 552 5.705902 ACCATTAACGGTGCTAATTTTCAC 58.294 37.500 0.00 2.26 38.07 3.18
551 553 5.241949 ACCATTAACGGTGCTAATTTTCACA 59.758 36.000 0.00 0.00 38.07 3.58
558 560 4.447054 CGGTGCTAATTTTCACATGCAAAA 59.553 37.500 10.59 5.80 35.04 2.44
584 588 8.721019 AAATGGCAATTAGGTCAACATTTATG 57.279 30.769 0.00 0.00 35.88 1.90
586 590 6.862209 TGGCAATTAGGTCAACATTTATGAC 58.138 36.000 0.00 0.00 45.08 3.06
595 616 5.318349 GTCAACATTTATGACCGTTAACCG 58.682 41.667 0.00 0.00 41.02 4.44
596 617 5.120519 GTCAACATTTATGACCGTTAACCGA 59.879 40.000 0.00 0.00 41.02 4.69
599 620 6.114221 ACATTTATGACCGTTAACCGATTG 57.886 37.500 0.00 0.00 39.56 2.67
605 626 5.075858 TGACCGTTAACCGATTGACTATT 57.924 39.130 0.00 0.00 39.56 1.73
613 634 8.437742 CGTTAACCGATTGACTATTGTTTAACT 58.562 33.333 12.21 0.00 39.56 2.24
663 685 4.524053 AGCCTACTATACCTTTGTTTGGC 58.476 43.478 0.00 0.00 34.65 4.52
665 687 4.703093 GCCTACTATACCTTTGTTTGGCAA 59.297 41.667 0.00 0.00 34.61 4.52
688 710 2.789491 GCATTTTAGCATGCTCCCTC 57.211 50.000 26.57 6.17 45.35 4.30
689 711 2.305009 GCATTTTAGCATGCTCCCTCT 58.695 47.619 26.57 0.86 45.35 3.69
690 712 2.292845 GCATTTTAGCATGCTCCCTCTC 59.707 50.000 26.57 7.30 45.35 3.20
691 713 3.818180 CATTTTAGCATGCTCCCTCTCT 58.182 45.455 26.57 0.00 0.00 3.10
692 714 4.205587 CATTTTAGCATGCTCCCTCTCTT 58.794 43.478 26.57 0.00 0.00 2.85
693 715 5.371526 CATTTTAGCATGCTCCCTCTCTTA 58.628 41.667 26.57 0.00 0.00 2.10
694 716 5.636903 TTTTAGCATGCTCCCTCTCTTAT 57.363 39.130 26.57 0.00 0.00 1.73
695 717 4.881019 TTAGCATGCTCCCTCTCTTATC 57.119 45.455 26.57 0.00 0.00 1.75
696 718 1.977129 AGCATGCTCCCTCTCTTATCC 59.023 52.381 16.30 0.00 0.00 2.59
697 719 1.003003 GCATGCTCCCTCTCTTATCCC 59.997 57.143 11.37 0.00 0.00 3.85
698 720 1.627834 CATGCTCCCTCTCTTATCCCC 59.372 57.143 0.00 0.00 0.00 4.81
699 721 0.944999 TGCTCCCTCTCTTATCCCCT 59.055 55.000 0.00 0.00 0.00 4.79
700 722 1.133009 TGCTCCCTCTCTTATCCCCTC 60.133 57.143 0.00 0.00 0.00 4.30
701 723 1.149077 GCTCCCTCTCTTATCCCCTCT 59.851 57.143 0.00 0.00 0.00 3.69
702 724 2.427150 GCTCCCTCTCTTATCCCCTCTT 60.427 54.545 0.00 0.00 0.00 2.85
703 725 3.935172 CTCCCTCTCTTATCCCCTCTTT 58.065 50.000 0.00 0.00 0.00 2.52
704 726 4.302930 CTCCCTCTCTTATCCCCTCTTTT 58.697 47.826 0.00 0.00 0.00 2.27
705 727 4.299485 TCCCTCTCTTATCCCCTCTTTTC 58.701 47.826 0.00 0.00 0.00 2.29
706 728 4.040755 CCCTCTCTTATCCCCTCTTTTCA 58.959 47.826 0.00 0.00 0.00 2.69
707 729 4.141597 CCCTCTCTTATCCCCTCTTTTCAC 60.142 50.000 0.00 0.00 0.00 3.18
708 730 4.471386 CCTCTCTTATCCCCTCTTTTCACA 59.529 45.833 0.00 0.00 0.00 3.58
709 731 5.131809 CCTCTCTTATCCCCTCTTTTCACAT 59.868 44.000 0.00 0.00 0.00 3.21
710 732 5.994250 TCTCTTATCCCCTCTTTTCACATG 58.006 41.667 0.00 0.00 0.00 3.21
711 733 5.726308 TCTCTTATCCCCTCTTTTCACATGA 59.274 40.000 0.00 0.00 0.00 3.07
712 734 5.994250 TCTTATCCCCTCTTTTCACATGAG 58.006 41.667 0.00 0.00 0.00 2.90
713 735 5.726308 TCTTATCCCCTCTTTTCACATGAGA 59.274 40.000 0.00 0.00 0.00 3.27
714 736 3.988976 TCCCCTCTTTTCACATGAGAG 57.011 47.619 0.00 0.00 37.30 3.20
722 744 6.672266 TCTTTTCACATGAGAGGTAAGAGT 57.328 37.500 0.00 0.00 0.00 3.24
723 745 7.776618 TCTTTTCACATGAGAGGTAAGAGTA 57.223 36.000 0.00 0.00 0.00 2.59
724 746 8.367660 TCTTTTCACATGAGAGGTAAGAGTAT 57.632 34.615 0.00 0.00 0.00 2.12
725 747 8.253810 TCTTTTCACATGAGAGGTAAGAGTATG 58.746 37.037 0.00 0.00 0.00 2.39
726 748 7.482169 TTTCACATGAGAGGTAAGAGTATGT 57.518 36.000 0.00 0.00 0.00 2.29
727 749 8.589701 TTTCACATGAGAGGTAAGAGTATGTA 57.410 34.615 0.00 0.00 0.00 2.29
728 750 7.809546 TCACATGAGAGGTAAGAGTATGTAG 57.190 40.000 0.00 0.00 0.00 2.74
729 751 7.347252 TCACATGAGAGGTAAGAGTATGTAGT 58.653 38.462 0.00 0.00 0.00 2.73
730 752 8.491958 TCACATGAGAGGTAAGAGTATGTAGTA 58.508 37.037 0.00 0.00 0.00 1.82
731 753 8.779303 CACATGAGAGGTAAGAGTATGTAGTAG 58.221 40.741 0.00 0.00 0.00 2.57
732 754 8.715842 ACATGAGAGGTAAGAGTATGTAGTAGA 58.284 37.037 0.00 0.00 0.00 2.59
733 755 9.733556 CATGAGAGGTAAGAGTATGTAGTAGAT 57.266 37.037 0.00 0.00 0.00 1.98
734 756 9.953565 ATGAGAGGTAAGAGTATGTAGTAGATC 57.046 37.037 0.00 0.00 0.00 2.75
735 757 9.161572 TGAGAGGTAAGAGTATGTAGTAGATCT 57.838 37.037 0.00 0.00 0.00 2.75
736 758 9.431887 GAGAGGTAAGAGTATGTAGTAGATCTG 57.568 40.741 5.18 0.00 0.00 2.90
737 759 9.161572 AGAGGTAAGAGTATGTAGTAGATCTGA 57.838 37.037 5.18 0.00 0.00 3.27
738 760 9.431887 GAGGTAAGAGTATGTAGTAGATCTGAG 57.568 40.741 5.18 0.00 0.00 3.35
739 761 7.881232 AGGTAAGAGTATGTAGTAGATCTGAGC 59.119 40.741 5.18 0.00 0.00 4.26
740 762 7.120138 GGTAAGAGTATGTAGTAGATCTGAGCC 59.880 44.444 5.18 0.00 0.00 4.70
741 763 5.242434 AGAGTATGTAGTAGATCTGAGCCG 58.758 45.833 5.18 0.00 0.00 5.52
742 764 3.754323 AGTATGTAGTAGATCTGAGCCGC 59.246 47.826 5.18 0.00 0.00 6.53
743 765 2.350057 TGTAGTAGATCTGAGCCGCT 57.650 50.000 5.18 0.00 0.00 5.52
744 766 1.950216 TGTAGTAGATCTGAGCCGCTG 59.050 52.381 5.18 0.00 0.00 5.18
745 767 2.222886 GTAGTAGATCTGAGCCGCTGA 58.777 52.381 5.18 0.00 0.00 4.26
746 768 1.993956 AGTAGATCTGAGCCGCTGAT 58.006 50.000 5.18 0.00 37.82 2.90
747 769 1.885887 AGTAGATCTGAGCCGCTGATC 59.114 52.381 5.18 11.17 46.51 2.92
749 771 2.897780 GATCTGAGCCGCTGATCAC 58.102 57.895 13.35 0.00 45.85 3.06
750 772 0.103755 GATCTGAGCCGCTGATCACA 59.896 55.000 13.35 0.00 45.85 3.58
751 773 0.757512 ATCTGAGCCGCTGATCACAT 59.242 50.000 0.00 0.00 32.50 3.21
752 774 0.538584 TCTGAGCCGCTGATCACATT 59.461 50.000 0.00 0.00 32.50 2.71
753 775 1.756538 TCTGAGCCGCTGATCACATTA 59.243 47.619 0.00 0.00 32.50 1.90
754 776 2.168313 TCTGAGCCGCTGATCACATTAA 59.832 45.455 0.00 0.00 32.50 1.40
755 777 3.136763 CTGAGCCGCTGATCACATTAAT 58.863 45.455 0.00 0.00 32.50 1.40
756 778 3.544684 TGAGCCGCTGATCACATTAATT 58.455 40.909 0.00 0.00 30.48 1.40
757 779 4.702831 TGAGCCGCTGATCACATTAATTA 58.297 39.130 0.00 0.00 30.48 1.40
758 780 4.751600 TGAGCCGCTGATCACATTAATTAG 59.248 41.667 0.00 0.00 30.48 1.73
759 781 4.708177 AGCCGCTGATCACATTAATTAGT 58.292 39.130 0.00 0.00 0.00 2.24
760 782 4.512944 AGCCGCTGATCACATTAATTAGTG 59.487 41.667 6.44 6.44 37.10 2.74
761 783 4.319766 GCCGCTGATCACATTAATTAGTGG 60.320 45.833 12.09 4.00 41.13 4.00
762 784 4.816385 CCGCTGATCACATTAATTAGTGGT 59.184 41.667 12.09 2.00 36.28 4.16
763 785 5.050091 CCGCTGATCACATTAATTAGTGGTC 60.050 44.000 12.09 10.93 44.21 4.02
764 786 5.332581 CGCTGATCACATTAATTAGTGGTCG 60.333 44.000 12.09 8.46 46.31 4.79
765 787 6.530913 CTGATCACATTAATTAGTGGTCGG 57.469 41.667 12.09 11.56 46.31 4.79
766 788 6.228616 TGATCACATTAATTAGTGGTCGGA 57.771 37.500 12.09 5.09 46.31 4.55
767 789 6.826668 TGATCACATTAATTAGTGGTCGGAT 58.173 36.000 12.09 8.86 46.31 4.18
768 790 6.705825 TGATCACATTAATTAGTGGTCGGATG 59.294 38.462 12.09 1.29 46.31 3.51
769 791 6.228616 TCACATTAATTAGTGGTCGGATGA 57.771 37.500 12.09 3.46 36.43 2.92
770 792 6.645306 TCACATTAATTAGTGGTCGGATGAA 58.355 36.000 12.09 0.00 36.43 2.57
771 793 6.537301 TCACATTAATTAGTGGTCGGATGAAC 59.463 38.462 12.09 0.00 36.43 3.18
772 794 6.538742 CACATTAATTAGTGGTCGGATGAACT 59.461 38.462 12.09 0.00 31.14 3.01
773 795 6.761714 ACATTAATTAGTGGTCGGATGAACTC 59.238 38.462 12.09 0.00 31.14 3.01
774 796 6.540438 TTAATTAGTGGTCGGATGAACTCT 57.460 37.500 0.00 0.00 38.99 3.24
775 797 5.422214 AATTAGTGGTCGGATGAACTCTT 57.578 39.130 0.00 0.00 36.96 2.85
776 798 6.540438 AATTAGTGGTCGGATGAACTCTTA 57.460 37.500 0.00 0.00 36.96 2.10
777 799 6.732896 ATTAGTGGTCGGATGAACTCTTAT 57.267 37.500 0.00 0.00 36.96 1.73
778 800 4.657436 AGTGGTCGGATGAACTCTTATC 57.343 45.455 0.00 0.00 31.80 1.75
779 801 4.023980 AGTGGTCGGATGAACTCTTATCA 58.976 43.478 0.00 0.00 31.80 2.15
780 802 4.651503 AGTGGTCGGATGAACTCTTATCAT 59.348 41.667 0.00 0.00 40.14 2.45
806 828 8.705594 TCTTACCTCATATGTAAAAAGAGAGGG 58.294 37.037 10.01 0.00 44.12 4.30
807 829 6.893020 ACCTCATATGTAAAAAGAGAGGGT 57.107 37.500 10.01 0.00 44.12 4.34
808 830 7.989947 ACCTCATATGTAAAAAGAGAGGGTA 57.010 36.000 10.01 0.00 44.12 3.69
809 831 8.388656 ACCTCATATGTAAAAAGAGAGGGTAA 57.611 34.615 10.01 0.00 44.12 2.85
810 832 8.487028 ACCTCATATGTAAAAAGAGAGGGTAAG 58.513 37.037 10.01 0.00 44.12 2.34
811 833 8.705594 CCTCATATGTAAAAAGAGAGGGTAAGA 58.294 37.037 1.90 0.00 37.97 2.10
812 834 9.757227 CTCATATGTAAAAAGAGAGGGTAAGAG 57.243 37.037 1.90 0.00 0.00 2.85
813 835 8.705594 TCATATGTAAAAAGAGAGGGTAAGAGG 58.294 37.037 1.90 0.00 0.00 3.69
814 836 5.757099 TGTAAAAAGAGAGGGTAAGAGGG 57.243 43.478 0.00 0.00 0.00 4.30
815 837 5.408824 TGTAAAAAGAGAGGGTAAGAGGGA 58.591 41.667 0.00 0.00 0.00 4.20
816 838 5.484290 TGTAAAAAGAGAGGGTAAGAGGGAG 59.516 44.000 0.00 0.00 0.00 4.30
817 839 2.168458 AAGAGAGGGTAAGAGGGAGC 57.832 55.000 0.00 0.00 0.00 4.70
818 840 1.011595 AGAGAGGGTAAGAGGGAGCA 58.988 55.000 0.00 0.00 0.00 4.26
819 841 1.578215 AGAGAGGGTAAGAGGGAGCAT 59.422 52.381 0.00 0.00 0.00 3.79
820 842 1.691434 GAGAGGGTAAGAGGGAGCATG 59.309 57.143 0.00 0.00 0.00 4.06
821 843 1.008938 AGAGGGTAAGAGGGAGCATGT 59.991 52.381 0.00 0.00 0.00 3.21
822 844 1.840635 GAGGGTAAGAGGGAGCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
823 845 3.039011 GAGGGTAAGAGGGAGCATGTTA 58.961 50.000 0.00 0.00 0.00 2.41
824 846 3.454812 GAGGGTAAGAGGGAGCATGTTAA 59.545 47.826 0.00 0.00 0.00 2.01
825 847 3.850173 AGGGTAAGAGGGAGCATGTTAAA 59.150 43.478 0.00 0.00 0.00 1.52
826 848 4.291249 AGGGTAAGAGGGAGCATGTTAAAA 59.709 41.667 0.00 0.00 0.00 1.52
827 849 5.044105 AGGGTAAGAGGGAGCATGTTAAAAT 60.044 40.000 0.00 0.00 0.00 1.82
828 850 5.656859 GGGTAAGAGGGAGCATGTTAAAATT 59.343 40.000 0.00 0.00 0.00 1.82
829 851 6.154534 GGGTAAGAGGGAGCATGTTAAAATTT 59.845 38.462 0.00 0.00 0.00 1.82
830 852 7.035612 GGTAAGAGGGAGCATGTTAAAATTTG 58.964 38.462 0.00 0.00 0.00 2.32
831 853 5.077134 AGAGGGAGCATGTTAAAATTTGC 57.923 39.130 0.00 0.00 35.34 3.68
832 854 4.081476 AGAGGGAGCATGTTAAAATTTGCC 60.081 41.667 0.00 0.00 35.71 4.52
933 3549 5.363101 GAGGACTGCACTGATGATGAATTA 58.637 41.667 0.00 0.00 0.00 1.40
1026 3642 2.097110 TGGTAGTCATAGCCGGGATT 57.903 50.000 2.18 0.00 0.00 3.01
1168 3785 8.311109 ACACCTTCAACATTTACATAAAATCCC 58.689 33.333 0.00 0.00 35.54 3.85
1192 3809 3.553511 CCGAGTCATAACAGCTGAATGTC 59.446 47.826 23.35 18.97 31.50 3.06
1198 3815 1.630244 AACAGCTGAATGTCGAGCGC 61.630 55.000 23.35 0.00 40.34 5.92
1203 3820 2.508439 GAATGTCGAGCGCCCGAA 60.508 61.111 17.74 7.14 40.51 4.30
1245 3862 6.170506 GTTGTGGATTGGTCTTGTACAGATA 58.829 40.000 0.00 0.00 32.60 1.98
1473 4093 2.653234 ATGCTCTTATCCTGGCCAAG 57.347 50.000 7.01 0.00 0.00 3.61
1720 4352 2.457366 AGTGACCATCGACCAAGTTC 57.543 50.000 0.00 0.00 0.00 3.01
1725 4357 1.071071 ACCATCGACCAAGTTCGGAAA 59.929 47.619 0.00 0.00 39.58 3.13
1738 4370 4.588899 AGTTCGGAAATTGGATGACATGA 58.411 39.130 0.00 0.00 0.00 3.07
1940 4572 5.692814 TGAACATGAGCTTTCATTTCTTCG 58.307 37.500 0.00 0.00 0.00 3.79
2070 4719 5.506317 GCATATTGTGGTTCCATAGTGAAGC 60.506 44.000 0.00 0.00 41.83 3.86
2072 4721 3.057969 TGTGGTTCCATAGTGAAGCTG 57.942 47.619 0.00 0.00 41.96 4.24
2103 4752 9.023967 GCAGATTGGTTATGATATTGTGTTTTC 57.976 33.333 0.00 0.00 0.00 2.29
2106 4755 6.443934 TGGTTATGATATTGTGTTTTCCCG 57.556 37.500 0.00 0.00 0.00 5.14
2107 4756 6.181190 TGGTTATGATATTGTGTTTTCCCGA 58.819 36.000 0.00 0.00 0.00 5.14
2211 4866 7.309499 CCTCCTTTCGATATATCTACTTGCTGT 60.309 40.741 10.93 0.00 0.00 4.40
2318 4973 1.747355 AGCATACATCTTGCCAGCAAC 59.253 47.619 0.00 0.00 41.06 4.17
2433 5250 5.105064 TCCTAGTGCTTCACCCAAGTATAAC 60.105 44.000 0.00 0.00 34.49 1.89
2556 5373 2.042162 ACCAAAGGAGAATCAGGCACAT 59.958 45.455 0.00 0.00 36.25 3.21
2674 5497 1.338579 TGTCATGTCGCCACAAGCATA 60.339 47.619 0.00 0.00 44.04 3.14
2677 5500 2.167487 TCATGTCGCCACAAGCATACTA 59.833 45.455 0.00 0.00 44.04 1.82
2696 5519 2.386661 AGAAATGGCGAGTTCACGAT 57.613 45.000 11.46 0.00 35.09 3.73
2725 5551 1.678627 CTCTCCGACCATGAGATCGTT 59.321 52.381 11.41 0.00 38.16 3.85
2738 5564 0.798776 GATCGTTGCCACTCACTTGG 59.201 55.000 0.00 0.00 39.98 3.61
2749 5575 1.618837 ACTCACTTGGCACGATACTGT 59.381 47.619 0.00 0.00 0.00 3.55
2768 5594 2.011453 GCCTATTTGGTGGCGTACG 58.989 57.895 11.84 11.84 39.71 3.67
2839 5665 1.084370 CCGTCAAGAAGGATGCCGAC 61.084 60.000 0.00 0.00 31.21 4.79
2902 5743 4.803426 CGGGTGGTCGAGCTGCTC 62.803 72.222 19.53 19.53 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.286553 AGTCGAGAGAGAGGTTGGGAT 59.713 52.381 0.00 0.00 43.49 3.85
68 70 3.199946 AGATCAGAGTCGAGAGAGAGGTT 59.800 47.826 0.00 0.00 43.49 3.50
69 71 2.771943 AGATCAGAGTCGAGAGAGAGGT 59.228 50.000 0.00 0.00 43.49 3.85
99 101 9.171877 ACTTTTGTCCTTTTAATTTGATTTGCA 57.828 25.926 0.00 0.00 0.00 4.08
125 127 0.680921 CCTCGGTTAGTACGTCCCCA 60.681 60.000 0.00 0.00 0.00 4.96
182 184 0.884704 GCGACGTGGATATGGCCAAT 60.885 55.000 10.96 4.59 40.20 3.16
217 219 3.580022 TGACAGACTGATGGTGATGAACT 59.420 43.478 10.08 0.00 0.00 3.01
218 220 3.930336 TGACAGACTGATGGTGATGAAC 58.070 45.455 10.08 0.00 0.00 3.18
219 221 3.055602 CCTGACAGACTGATGGTGATGAA 60.056 47.826 10.08 0.00 0.00 2.57
220 222 2.498885 CCTGACAGACTGATGGTGATGA 59.501 50.000 10.08 0.00 0.00 2.92
221 223 2.498885 TCCTGACAGACTGATGGTGATG 59.501 50.000 10.08 0.00 0.00 3.07
268 270 2.845752 TTACGGTCCAGCGCATCCAC 62.846 60.000 11.47 0.00 0.00 4.02
272 274 0.739813 GAAGTTACGGTCCAGCGCAT 60.740 55.000 11.47 0.00 0.00 4.73
365 367 2.283298 ACGAATCTGGCATGCTTACAG 58.717 47.619 18.92 16.21 0.00 2.74
378 380 5.615925 AATAGCTCCTGGTTAACGAATCT 57.384 39.130 0.00 0.00 0.00 2.40
443 445 8.214472 GCACACATTACAATCTATACGTACATG 58.786 37.037 0.00 0.00 0.00 3.21
444 446 7.923878 TGCACACATTACAATCTATACGTACAT 59.076 33.333 0.00 0.00 0.00 2.29
445 447 7.259161 TGCACACATTACAATCTATACGTACA 58.741 34.615 0.00 0.00 0.00 2.90
446 448 7.688478 TGCACACATTACAATCTATACGTAC 57.312 36.000 0.00 0.00 0.00 3.67
558 560 9.165035 CATAAATGTTGACCTAATTGCCATTTT 57.835 29.630 0.00 0.00 34.15 1.82
562 564 6.862209 GTCATAAATGTTGACCTAATTGCCA 58.138 36.000 0.00 0.00 38.00 4.92
573 577 5.236282 TCGGTTAACGGTCATAAATGTTGA 58.764 37.500 12.33 0.00 44.45 3.18
584 588 4.866486 ACAATAGTCAATCGGTTAACGGTC 59.134 41.667 12.33 0.00 44.45 4.79
586 590 5.789710 AACAATAGTCAATCGGTTAACGG 57.210 39.130 6.82 6.82 44.45 4.44
587 591 8.437742 AGTTAAACAATAGTCAATCGGTTAACG 58.562 33.333 0.00 0.00 46.11 3.18
591 595 7.972832 TCAGTTAAACAATAGTCAATCGGTT 57.027 32.000 0.00 0.00 0.00 4.44
592 596 8.450964 CAATCAGTTAAACAATAGTCAATCGGT 58.549 33.333 0.00 0.00 0.00 4.69
593 597 8.664798 TCAATCAGTTAAACAATAGTCAATCGG 58.335 33.333 0.00 0.00 0.00 4.18
595 616 9.774742 GGTCAATCAGTTAAACAATAGTCAATC 57.225 33.333 0.00 0.00 0.00 2.67
596 617 9.520515 AGGTCAATCAGTTAAACAATAGTCAAT 57.479 29.630 0.00 0.00 0.00 2.57
599 620 8.230486 CACAGGTCAATCAGTTAAACAATAGTC 58.770 37.037 0.00 0.00 0.00 2.59
673 695 4.040952 GGATAAGAGAGGGAGCATGCTAAA 59.959 45.833 22.74 0.00 0.00 1.85
676 698 1.977129 GGATAAGAGAGGGAGCATGCT 59.023 52.381 22.92 22.92 0.00 3.79
678 700 1.627834 GGGGATAAGAGAGGGAGCATG 59.372 57.143 0.00 0.00 0.00 4.06
679 701 1.511747 AGGGGATAAGAGAGGGAGCAT 59.488 52.381 0.00 0.00 0.00 3.79
680 702 0.944999 AGGGGATAAGAGAGGGAGCA 59.055 55.000 0.00 0.00 0.00 4.26
681 703 1.149077 AGAGGGGATAAGAGAGGGAGC 59.851 57.143 0.00 0.00 0.00 4.70
682 704 3.628832 AAGAGGGGATAAGAGAGGGAG 57.371 52.381 0.00 0.00 0.00 4.30
683 705 4.265307 TGAAAAGAGGGGATAAGAGAGGGA 60.265 45.833 0.00 0.00 0.00 4.20
684 706 4.040755 TGAAAAGAGGGGATAAGAGAGGG 58.959 47.826 0.00 0.00 0.00 4.30
685 707 4.471386 TGTGAAAAGAGGGGATAAGAGAGG 59.529 45.833 0.00 0.00 0.00 3.69
686 708 5.683876 TGTGAAAAGAGGGGATAAGAGAG 57.316 43.478 0.00 0.00 0.00 3.20
687 709 5.726308 TCATGTGAAAAGAGGGGATAAGAGA 59.274 40.000 0.00 0.00 0.00 3.10
688 710 5.994250 TCATGTGAAAAGAGGGGATAAGAG 58.006 41.667 0.00 0.00 0.00 2.85
689 711 5.726308 TCTCATGTGAAAAGAGGGGATAAGA 59.274 40.000 0.00 0.00 0.00 2.10
690 712 5.994250 TCTCATGTGAAAAGAGGGGATAAG 58.006 41.667 0.00 0.00 0.00 1.73
691 713 5.994250 CTCTCATGTGAAAAGAGGGGATAA 58.006 41.667 0.00 0.00 34.24 1.75
692 714 5.620738 CTCTCATGTGAAAAGAGGGGATA 57.379 43.478 0.00 0.00 34.24 2.59
693 715 4.500499 CTCTCATGTGAAAAGAGGGGAT 57.500 45.455 0.00 0.00 34.24 3.85
694 716 3.988976 CTCTCATGTGAAAAGAGGGGA 57.011 47.619 0.00 0.00 34.24 4.81
698 720 6.696411 ACTCTTACCTCTCATGTGAAAAGAG 58.304 40.000 24.85 24.85 42.67 2.85
699 721 6.672266 ACTCTTACCTCTCATGTGAAAAGA 57.328 37.500 12.55 12.55 0.00 2.52
700 722 8.037758 ACATACTCTTACCTCTCATGTGAAAAG 58.962 37.037 0.00 4.01 0.00 2.27
701 723 7.907389 ACATACTCTTACCTCTCATGTGAAAA 58.093 34.615 0.00 0.00 0.00 2.29
702 724 7.482169 ACATACTCTTACCTCTCATGTGAAA 57.518 36.000 0.00 0.00 0.00 2.69
703 725 7.834681 ACTACATACTCTTACCTCTCATGTGAA 59.165 37.037 0.00 0.00 0.00 3.18
704 726 7.347252 ACTACATACTCTTACCTCTCATGTGA 58.653 38.462 0.00 0.00 0.00 3.58
705 727 7.575414 ACTACATACTCTTACCTCTCATGTG 57.425 40.000 0.00 0.00 0.00 3.21
706 728 8.715842 TCTACTACATACTCTTACCTCTCATGT 58.284 37.037 0.00 0.00 0.00 3.21
707 729 9.733556 ATCTACTACATACTCTTACCTCTCATG 57.266 37.037 0.00 0.00 0.00 3.07
708 730 9.953565 GATCTACTACATACTCTTACCTCTCAT 57.046 37.037 0.00 0.00 0.00 2.90
709 731 9.161572 AGATCTACTACATACTCTTACCTCTCA 57.838 37.037 0.00 0.00 0.00 3.27
710 732 9.431887 CAGATCTACTACATACTCTTACCTCTC 57.568 40.741 0.00 0.00 0.00 3.20
711 733 9.161572 TCAGATCTACTACATACTCTTACCTCT 57.838 37.037 0.00 0.00 0.00 3.69
712 734 9.431887 CTCAGATCTACTACATACTCTTACCTC 57.568 40.741 0.00 0.00 0.00 3.85
713 735 7.881232 GCTCAGATCTACTACATACTCTTACCT 59.119 40.741 0.00 0.00 0.00 3.08
714 736 7.120138 GGCTCAGATCTACTACATACTCTTACC 59.880 44.444 0.00 0.00 0.00 2.85
715 737 7.148540 CGGCTCAGATCTACTACATACTCTTAC 60.149 44.444 0.00 0.00 0.00 2.34
716 738 6.874664 CGGCTCAGATCTACTACATACTCTTA 59.125 42.308 0.00 0.00 0.00 2.10
717 739 5.703592 CGGCTCAGATCTACTACATACTCTT 59.296 44.000 0.00 0.00 0.00 2.85
718 740 5.242434 CGGCTCAGATCTACTACATACTCT 58.758 45.833 0.00 0.00 0.00 3.24
719 741 4.142773 GCGGCTCAGATCTACTACATACTC 60.143 50.000 0.00 0.00 0.00 2.59
720 742 3.754323 GCGGCTCAGATCTACTACATACT 59.246 47.826 0.00 0.00 0.00 2.12
721 743 3.754323 AGCGGCTCAGATCTACTACATAC 59.246 47.826 0.00 0.00 0.00 2.39
722 744 3.753797 CAGCGGCTCAGATCTACTACATA 59.246 47.826 0.00 0.00 0.00 2.29
723 745 2.556189 CAGCGGCTCAGATCTACTACAT 59.444 50.000 0.00 0.00 0.00 2.29
724 746 1.950216 CAGCGGCTCAGATCTACTACA 59.050 52.381 0.00 0.00 0.00 2.74
725 747 2.222886 TCAGCGGCTCAGATCTACTAC 58.777 52.381 0.00 0.00 0.00 2.73
726 748 2.640316 TCAGCGGCTCAGATCTACTA 57.360 50.000 0.00 0.00 0.00 1.82
727 749 1.885887 GATCAGCGGCTCAGATCTACT 59.114 52.381 18.16 0.00 35.54 2.57
728 750 1.611006 TGATCAGCGGCTCAGATCTAC 59.389 52.381 22.99 6.32 38.22 2.59
729 751 1.611006 GTGATCAGCGGCTCAGATCTA 59.389 52.381 22.99 12.12 38.22 1.98
730 752 0.388659 GTGATCAGCGGCTCAGATCT 59.611 55.000 22.99 0.00 38.22 2.75
731 753 0.103755 TGTGATCAGCGGCTCAGATC 59.896 55.000 18.45 18.45 37.98 2.75
732 754 0.757512 ATGTGATCAGCGGCTCAGAT 59.242 50.000 0.00 0.11 0.00 2.90
733 755 0.538584 AATGTGATCAGCGGCTCAGA 59.461 50.000 0.00 0.00 0.00 3.27
734 756 2.229675 TAATGTGATCAGCGGCTCAG 57.770 50.000 0.00 0.00 0.00 3.35
735 757 2.689553 TTAATGTGATCAGCGGCTCA 57.310 45.000 0.00 0.00 0.00 4.26
736 758 4.752101 ACTAATTAATGTGATCAGCGGCTC 59.248 41.667 0.00 0.00 0.00 4.70
737 759 4.512944 CACTAATTAATGTGATCAGCGGCT 59.487 41.667 0.00 0.00 36.38 5.52
738 760 4.319766 CCACTAATTAATGTGATCAGCGGC 60.320 45.833 0.00 0.00 36.38 6.53
739 761 4.816385 ACCACTAATTAATGTGATCAGCGG 59.184 41.667 0.00 0.00 36.38 5.52
740 762 5.332581 CGACCACTAATTAATGTGATCAGCG 60.333 44.000 0.00 1.63 36.38 5.18
741 763 5.050091 CCGACCACTAATTAATGTGATCAGC 60.050 44.000 0.00 0.00 36.38 4.26
742 764 6.280643 TCCGACCACTAATTAATGTGATCAG 58.719 40.000 0.00 0.00 36.38 2.90
743 765 6.228616 TCCGACCACTAATTAATGTGATCA 57.771 37.500 7.34 0.00 36.38 2.92
744 766 6.929049 TCATCCGACCACTAATTAATGTGATC 59.071 38.462 7.34 0.00 36.38 2.92
745 767 6.826668 TCATCCGACCACTAATTAATGTGAT 58.173 36.000 7.34 0.00 36.38 3.06
746 768 6.228616 TCATCCGACCACTAATTAATGTGA 57.771 37.500 7.34 0.00 36.38 3.58
747 769 6.538742 AGTTCATCCGACCACTAATTAATGTG 59.461 38.462 0.00 0.00 0.00 3.21
748 770 6.650120 AGTTCATCCGACCACTAATTAATGT 58.350 36.000 0.00 0.00 0.00 2.71
749 771 6.986817 AGAGTTCATCCGACCACTAATTAATG 59.013 38.462 0.00 0.00 0.00 1.90
750 772 7.125792 AGAGTTCATCCGACCACTAATTAAT 57.874 36.000 0.00 0.00 0.00 1.40
751 773 6.540438 AGAGTTCATCCGACCACTAATTAA 57.460 37.500 0.00 0.00 0.00 1.40
752 774 6.540438 AAGAGTTCATCCGACCACTAATTA 57.460 37.500 0.00 0.00 0.00 1.40
753 775 5.422214 AAGAGTTCATCCGACCACTAATT 57.578 39.130 0.00 0.00 0.00 1.40
754 776 6.323996 TGATAAGAGTTCATCCGACCACTAAT 59.676 38.462 0.00 0.00 0.00 1.73
755 777 5.655090 TGATAAGAGTTCATCCGACCACTAA 59.345 40.000 0.00 0.00 0.00 2.24
756 778 5.198207 TGATAAGAGTTCATCCGACCACTA 58.802 41.667 0.00 0.00 0.00 2.74
757 779 4.023980 TGATAAGAGTTCATCCGACCACT 58.976 43.478 0.00 0.00 0.00 4.00
758 780 4.386867 TGATAAGAGTTCATCCGACCAC 57.613 45.455 0.00 0.00 0.00 4.16
759 781 4.895889 AGATGATAAGAGTTCATCCGACCA 59.104 41.667 9.43 0.00 46.98 4.02
760 782 5.461032 AGATGATAAGAGTTCATCCGACC 57.539 43.478 9.43 0.00 46.98 4.79
761 783 6.864165 GGTAAGATGATAAGAGTTCATCCGAC 59.136 42.308 9.43 7.99 46.98 4.79
762 784 6.778069 AGGTAAGATGATAAGAGTTCATCCGA 59.222 38.462 9.43 0.00 46.98 4.55
763 785 6.987386 AGGTAAGATGATAAGAGTTCATCCG 58.013 40.000 9.43 0.00 46.98 4.18
764 786 7.957002 TGAGGTAAGATGATAAGAGTTCATCC 58.043 38.462 9.43 0.00 46.98 3.51
780 802 8.705594 CCCTCTCTTTTTACATATGAGGTAAGA 58.294 37.037 10.38 11.18 38.24 2.10
781 803 8.487028 ACCCTCTCTTTTTACATATGAGGTAAG 58.513 37.037 10.38 7.70 38.24 2.34
782 804 8.388656 ACCCTCTCTTTTTACATATGAGGTAA 57.611 34.615 10.38 0.00 38.24 2.85
783 805 7.989947 ACCCTCTCTTTTTACATATGAGGTA 57.010 36.000 10.38 0.00 38.24 3.08
784 806 6.893020 ACCCTCTCTTTTTACATATGAGGT 57.107 37.500 10.38 0.00 38.24 3.85
785 807 8.705594 TCTTACCCTCTCTTTTTACATATGAGG 58.294 37.037 10.38 2.01 39.26 3.86
786 808 9.757227 CTCTTACCCTCTCTTTTTACATATGAG 57.243 37.037 10.38 0.00 0.00 2.90
787 809 8.705594 CCTCTTACCCTCTCTTTTTACATATGA 58.294 37.037 10.38 0.00 0.00 2.15
788 810 7.934120 CCCTCTTACCCTCTCTTTTTACATATG 59.066 40.741 0.00 0.00 0.00 1.78
789 811 7.849904 TCCCTCTTACCCTCTCTTTTTACATAT 59.150 37.037 0.00 0.00 0.00 1.78
790 812 7.194050 TCCCTCTTACCCTCTCTTTTTACATA 58.806 38.462 0.00 0.00 0.00 2.29
791 813 6.030082 TCCCTCTTACCCTCTCTTTTTACAT 58.970 40.000 0.00 0.00 0.00 2.29
792 814 5.408824 TCCCTCTTACCCTCTCTTTTTACA 58.591 41.667 0.00 0.00 0.00 2.41
793 815 5.627272 GCTCCCTCTTACCCTCTCTTTTTAC 60.627 48.000 0.00 0.00 0.00 2.01
794 816 4.470304 GCTCCCTCTTACCCTCTCTTTTTA 59.530 45.833 0.00 0.00 0.00 1.52
795 817 3.264706 GCTCCCTCTTACCCTCTCTTTTT 59.735 47.826 0.00 0.00 0.00 1.94
796 818 2.841266 GCTCCCTCTTACCCTCTCTTTT 59.159 50.000 0.00 0.00 0.00 2.27
797 819 2.225650 TGCTCCCTCTTACCCTCTCTTT 60.226 50.000 0.00 0.00 0.00 2.52
798 820 1.362932 TGCTCCCTCTTACCCTCTCTT 59.637 52.381 0.00 0.00 0.00 2.85
799 821 1.011595 TGCTCCCTCTTACCCTCTCT 58.988 55.000 0.00 0.00 0.00 3.10
800 822 1.691434 CATGCTCCCTCTTACCCTCTC 59.309 57.143 0.00 0.00 0.00 3.20
801 823 1.008938 ACATGCTCCCTCTTACCCTCT 59.991 52.381 0.00 0.00 0.00 3.69
802 824 1.501582 ACATGCTCCCTCTTACCCTC 58.498 55.000 0.00 0.00 0.00 4.30
803 825 1.972588 AACATGCTCCCTCTTACCCT 58.027 50.000 0.00 0.00 0.00 4.34
804 826 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
805 827 6.775594 AATTTTAACATGCTCCCTCTTACC 57.224 37.500 0.00 0.00 0.00 2.85
806 828 6.531594 GCAAATTTTAACATGCTCCCTCTTAC 59.468 38.462 0.00 0.00 35.93 2.34
807 829 6.350949 GGCAAATTTTAACATGCTCCCTCTTA 60.351 38.462 0.00 0.00 38.79 2.10
808 830 5.482006 GCAAATTTTAACATGCTCCCTCTT 58.518 37.500 0.00 0.00 35.93 2.85
809 831 4.081476 GGCAAATTTTAACATGCTCCCTCT 60.081 41.667 0.00 0.00 38.79 3.69
810 832 4.183865 GGCAAATTTTAACATGCTCCCTC 58.816 43.478 0.00 0.00 38.79 4.30
811 833 3.055167 GGGCAAATTTTAACATGCTCCCT 60.055 43.478 0.00 0.00 38.79 4.20
812 834 3.270027 GGGCAAATTTTAACATGCTCCC 58.730 45.455 0.00 0.00 38.79 4.30
814 836 3.270027 GGGGGCAAATTTTAACATGCTC 58.730 45.455 0.00 0.00 38.56 4.26
815 837 2.641815 TGGGGGCAAATTTTAACATGCT 59.358 40.909 0.00 0.00 38.79 3.79
816 838 3.064900 TGGGGGCAAATTTTAACATGC 57.935 42.857 0.00 0.00 38.06 4.06
817 839 7.693969 TTATTTGGGGGCAAATTTTAACATG 57.306 32.000 0.00 0.00 36.35 3.21
818 840 9.981460 TTATTATTTGGGGGCAAATTTTAACAT 57.019 25.926 0.00 0.00 36.35 2.71
819 841 9.232473 GTTATTATTTGGGGGCAAATTTTAACA 57.768 29.630 6.48 0.00 36.35 2.41
820 842 9.456147 AGTTATTATTTGGGGGCAAATTTTAAC 57.544 29.630 0.00 5.02 36.35 2.01
825 847 9.669024 ACTATAGTTATTATTTGGGGGCAAATT 57.331 29.630 0.00 0.00 36.35 1.82
829 851 9.969001 GAATACTATAGTTATTATTTGGGGGCA 57.031 33.333 11.40 0.00 0.00 5.36
933 3549 4.323417 TCACATGCTTGGATAAGAAACGT 58.677 39.130 4.44 0.00 35.92 3.99
1026 3642 2.360600 AAATGCCCGTAAGCGCCA 60.361 55.556 2.29 0.00 41.42 5.69
1032 3648 0.462403 GGCGGTAGAAATGCCCGTAA 60.462 55.000 0.00 0.00 43.06 3.18
1042 3658 0.988832 AAAGGATGGTGGCGGTAGAA 59.011 50.000 0.00 0.00 0.00 2.10
1043 3659 0.251916 CAAAGGATGGTGGCGGTAGA 59.748 55.000 0.00 0.00 0.00 2.59
1168 3785 2.654749 TCAGCTGTTATGACTCGGTG 57.345 50.000 14.67 4.23 0.00 4.94
1192 3809 3.853330 CACATGTTCGGGCGCTCG 61.853 66.667 26.97 26.97 0.00 5.03
1198 3815 0.253044 ACCAGGATCACATGTTCGGG 59.747 55.000 0.00 0.52 0.00 5.14
1245 3862 0.608035 CGTTGGCATTGGTACCCACT 60.608 55.000 10.07 0.00 30.78 4.00
1322 3939 4.641989 AGGATGTCCATATTGCTTGAACAC 59.358 41.667 1.30 0.00 38.89 3.32
1473 4093 8.200364 ACCATGCATAATATTTGAAAAGCAAC 57.800 30.769 0.00 0.00 35.91 4.17
1720 4352 3.317149 AGCATCATGTCATCCAATTTCCG 59.683 43.478 0.00 0.00 0.00 4.30
1725 4357 3.905968 TGGAAGCATCATGTCATCCAAT 58.094 40.909 5.91 0.00 34.21 3.16
1738 4370 1.681327 CTGCTGGCCTTGGAAGCAT 60.681 57.895 14.50 0.00 45.35 3.79
1782 4414 5.051106 ACGCAACAACTTGAATAATGCAAAC 60.051 36.000 0.00 0.00 32.80 2.93
1884 4516 5.222870 AGGACCCTTTCATCATCACTATCT 58.777 41.667 0.00 0.00 0.00 1.98
1940 4572 8.375493 TGGGAGGGATGTATAATAGTAATCAC 57.625 38.462 0.00 0.00 0.00 3.06
2006 4638 8.461249 AATAAGCATGCTTGAGACTGAAATAT 57.539 30.769 37.21 18.41 37.47 1.28
2070 4719 8.451748 CAATATCATAACCAATCTGCTCATCAG 58.548 37.037 0.00 0.00 44.21 2.90
2072 4721 8.235226 CACAATATCATAACCAATCTGCTCATC 58.765 37.037 0.00 0.00 0.00 2.92
2094 4743 6.477688 GTCGAATATAGATCGGGAAAACACAA 59.522 38.462 9.92 0.00 40.59 3.33
2095 4744 5.981315 GTCGAATATAGATCGGGAAAACACA 59.019 40.000 9.92 0.00 40.59 3.72
2103 4752 1.471287 TGCGGTCGAATATAGATCGGG 59.529 52.381 13.42 3.31 42.00 5.14
2106 4755 8.841822 CGATAAATATGCGGTCGAATATAGATC 58.158 37.037 4.47 8.85 34.46 2.75
2107 4756 8.565416 TCGATAAATATGCGGTCGAATATAGAT 58.435 33.333 4.47 2.10 38.25 1.98
2211 4866 1.605457 CCTCAACAAGCACGACTAGCA 60.605 52.381 0.00 0.00 0.00 3.49
2318 4973 4.433186 TGCATTTACGAACCATCAAAGG 57.567 40.909 0.00 0.00 0.00 3.11
2433 5250 2.229062 TGTCGAAGAAGAGCCACTACAG 59.771 50.000 0.00 0.00 39.69 2.74
2556 5373 1.953686 GAGTTGCACCAAGGTTGCTTA 59.046 47.619 12.54 2.15 0.00 3.09
2674 5497 2.230508 TCGTGAACTCGCCATTTCTAGT 59.769 45.455 0.00 0.00 0.00 2.57
2677 5500 2.002586 CATCGTGAACTCGCCATTTCT 58.997 47.619 0.00 0.00 0.00 2.52
2696 5519 1.699730 TGGTCGGAGAGAAGTTGACA 58.300 50.000 0.00 0.00 36.95 3.58
2839 5665 3.058160 CAGCCAACAAGGGAGCGG 61.058 66.667 0.00 0.00 38.09 5.52
2902 5743 3.648982 TGCTTTGACCGCGTGCTG 61.649 61.111 4.92 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.